Your job contains 1 sequence.
>028995
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKF
SQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGR
FIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKY
KKKKNYRRNIGHRQVKDLSE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028995
(200 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014711 - symbol:RPL21C "chloroplast ribosomal... 337 1.4e-30 1
TAIR|locus:2126699 - symbol:NFD1 "NUCLEAR FUSION DEFECTIV... 192 3.3e-15 1
DICTYBASE|DDB_G0288799 - symbol:mrpl21 "ribosomal protein... 168 1.2e-12 1
TIGR_CMR|GSU_3236 - symbol:GSU_3236 "ribosomal protein L2... 122 8.7e-08 1
WB|WBGene00023422 - symbol:mrpl-21 species:6239 "Caenorha... 120 1.4e-07 1
TIGR_CMR|BA_4676 - symbol:BA_4676 "ribosomal protein L21"... 104 7.0e-06 1
FB|FBgn0036853 - symbol:mRpL21 "mitochondrial ribosomal p... 103 1.6e-05 1
TIGR_CMR|CBU_0385 - symbol:CBU_0385 "ribosomal protein L2... 100 1.9e-05 1
TIGR_CMR|DET_1325 - symbol:DET_1325 "ribosomal protein L2... 97 3.9e-05 1
TIGR_CMR|SPO_1990 - symbol:SPO_1990 "ribosomal protein L2... 95 0.00073 1
>TAIR|locus:2014711 [details] [associations]
symbol:RPL21C "chloroplast ribosomal protein L21"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP;RCA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009658 "chloroplast organization" evidence=IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0009793 "embryo development
ending in seed dormancy" evidence=IMP] [GO:0010027 "thylakoid
membrane organization" evidence=RCA;IMP] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0009902 "chloroplast relocation"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042742 "defense response to bacterium" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009570 GO:GO:0006412 GO:GO:0009409
GO:GO:0009941 GO:GO:0009658 GO:GO:0009793 GO:GO:0010027
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AC007887 EMBL:Z49787
EMBL:Y15964 EMBL:AY058118 EMBL:AF428363 EMBL:AY116944
IPI:IPI00532845 PIR:S71282 RefSeq:NP_174808.1 UniGene:At.23722
ProteinModelPortal:P51412 SMR:P51412 STRING:P51412 PaxDb:P51412
PRIDE:P51412 EnsemblPlants:AT1G35680.1 GeneID:840472
KEGG:ath:AT1G35680 GeneFarm:195 TAIR:At1g35680 eggNOG:COG0261
HOGENOM:HOG000238965 InParanoid:P51412 KO:K02888 OMA:TNATVHA
PhylomeDB:P51412 ProtClustDB:CLSN2914377 Genevestigator:P51412
GermOnline:AT1G35680 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
Uniprot:P51412
Length = 220
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 78/177 (44%), Positives = 97/177 (54%)
Query: 19 HCKISCQNPNPHPQLSLSKSKLCSFPSPKL-YTRPTFSFTHKFSQTXXXXXXXXXXXXXX 77
HC ++ + + SLSK L + P + P+ + T + + T
Sbjct: 17 HCNVNSRRSSTI-LCSLSKPSL-NLAKPLTGFLSPSTASTSRTAFTVAPKFAESVVEAEP 74
Query: 78 XXXXXXXXXXXXXXXXXKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKII 137
+E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D+I+
Sbjct: 75 ETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIV 134
Query: 138 LNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN GHRQ
Sbjct: 135 LNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQ 191
>TAIR|locus:2126699 [details] [associations]
symbol:NFD1 "NUCLEAR FUSION DEFECTIVE 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000741 "karyogamy" evidence=RCA;IMP] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 GO:GO:0005739 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009555 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0009553 EMBL:AL022198 GO:GO:0019843
EMBL:AL161578 GO:GO:0000741 GO:GO:0009567 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 EMBL:AJ278909 EMBL:BT005870 EMBL:AY088563
IPI:IPI00547532 PIR:B85362 RefSeq:NP_567861.1 UniGene:At.23122
ProteinModelPortal:Q8L9A0 SMR:Q8L9A0 IntAct:Q8L9A0 STRING:Q8L9A0
PaxDb:Q8L9A0 PRIDE:Q8L9A0 EnsemblPlants:AT4G30930.1 GeneID:829217
KEGG:ath:AT4G30930 TAIR:At4g30930 eggNOG:NOG314874
InParanoid:Q8L9A0 OMA:ADMEVER PhylomeDB:Q8L9A0
ProtClustDB:CLSN2695801 Genevestigator:Q8L9A0 GermOnline:AT4G30930
Uniprot:Q8L9A0
Length = 270
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 40/94 (42%), Positives = 57/94 (60%)
Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
E +FA+V IGS Q+ V G I+T++LK ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197
Query: 161 AVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
VHAVVEE L+ GHRQ
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQ 231
>DICTYBASE|DDB_G0288799 [details] [associations]
symbol:mrpl21 "ribosomal protein L21, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001787 Pfam:PF00829
dictyBase:DDB_G0288799 GO:GO:0005739 GO:GO:0006412
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000125 eggNOG:COG0261 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 RefSeq:XP_636527.1 ProteinModelPortal:Q54IF0
STRING:Q54IF0 EnsemblProtists:DDB0267021 GeneID:8626812
KEGG:ddi:DDB_G0288799 OMA:FAVVHIS Uniprot:Q54IF0
Length = 172
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 35/72 (48%), Positives = 49/72 (68%)
Query: 98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
P ++ FAVV I +QY V G I T +++ +V + I+L+KVLLVGTK T IGKP++
Sbjct: 56 PIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPII 114
Query: 158 TNAAVHAVVEEQ 169
+N VHA +EEQ
Sbjct: 115 SNFKVHAYIEEQ 126
>TIGR_CMR|GSU_3236 [details] [associations]
symbol:GSU_3236 "ribosomal protein L21" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261
KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_954277.1 ProteinModelPortal:Q747M9
GeneID:2688294 KEGG:gsu:GSU3236 PATRIC:22029319
BioCyc:GSUL243231:GH27-3214-MONOMER Uniprot:Q747M9
Length = 102
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G F+ ++L+GA V D + L VL+VG +T IG P+V +A+V
Sbjct: 1 MYAVIRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGETVA-IGTPLVPSASV 58
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
+ +QG + GHRQ
Sbjct: 59 VGRIVDQGKDKKILVFKSKRRKNFRKMYGHRQ 90
>WB|WBGene00023422 [details] [associations]
symbol:mrpl-21 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR001787 Pfam:PF00829
GO:GO:0040010 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:Z46937 PANTHER:PTHR21349 eggNOG:NOG314874
GeneTree:ENSGT00390000005535 RefSeq:NP_001022585.1
ProteinModelPortal:Q6A575 SMR:Q6A575 STRING:Q6A575 PaxDb:Q6A575
EnsemblMetazoa:F43C1.6.1 EnsemblMetazoa:F43C1.6.2 GeneID:3565999
KEGG:cel:CELE_F43C1.6 UCSC:F43C1.6.1 CTD:3565999 WormBase:F43C1.6
HOGENOM:HOG000209907 InParanoid:Q6A575 OMA:WPPNIGD NextBio:958679
Uniprot:Q6A575
Length = 171
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 97 EPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPV 156
E KR+ +FAVV + RQ+ V G I + NV D+I L KVL+VG + G+P+
Sbjct: 55 EEKRQRLFAVVYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSLFGRPL 114
Query: 157 VTNAAVHA---VVEEQGLNP 173
+ +AV VVE++ NP
Sbjct: 115 LDASAVTVDAVVVEKKTTNP 134
>TIGR_CMR|BA_4676 [details] [associations]
symbol:BA_4676 "ribosomal protein L21" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 RefSeq:NP_846890.1
RefSeq:YP_021324.1 RefSeq:YP_030589.1 ProteinModelPortal:Q81LE6
DNASU:1085870 EnsemblBacteria:EBBACT00000010321
EnsemblBacteria:EBBACT00000015606 EnsemblBacteria:EBBACT00000021517
GeneID:1085870 GeneID:2819827 GeneID:2850867 KEGG:ban:BA_4676
KEGG:bar:GBAA_4676 KEGG:bat:BAS4342 HOGENOM:HOG000036264
OMA:KVTIIKF BioCyc:BANT260799:GJAJ-4397-MONOMER
BioCyc:BANT261594:GJ7F-4545-MONOMER Uniprot:Q81LE6
Length = 102
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +Q V G+ IY ++L + + +KVL VG + +G PVV A V
Sbjct: 1 MYAIIETGGKQIKVEAGQAIYIEKLD-VEAGETVTFDKVLFVGGENVK-VGSPVVEGATV 58
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
A VE+QG GHRQ
Sbjct: 59 TAKVEKQGRAKKIIVFKYKAKKNNRKKQGHRQ 90
>FB|FBgn0036853 [details] [associations]
symbol:mRpL21 "mitochondrial ribosomal protein L21"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 EMBL:AE014296
GO:GO:0006412 GO:GO:0003723 GO:GO:0005762 GO:GO:0003735
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 CTD:219927
GeneTree:ENSGT00390000005535 FlyBase:FBgn0036853 EMBL:BT128761
RefSeq:NP_649095.2 UniGene:Dm.5837 SMR:Q9VVX4 STRING:Q9VVX4
EnsemblMetazoa:FBtr0075022 EnsemblMetazoa:FBtr0333224 GeneID:40091
KEGG:dme:Dmel_CG9730 UCSC:CG9730-RA InParanoid:Q9VVX4 OMA:KDQQKEC
GenomeRNAi:40091 NextBio:816945 Uniprot:Q9VVX4
Length = 201
Score = 103 (41.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 96 EEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKP 155
++ ++ +FAVV + +Q+ V PG I + + D+I L+KVLL G + T +G+P
Sbjct: 71 QKSEQGRLFAVVHLCGKQFKVTPGDIILVEGYWPPTIGDEISLDKVLLAGARDFTLVGRP 130
Query: 156 VVTNAA--VHAVVEEQGLN 172
++ V A V E+ L+
Sbjct: 131 ILEPGLILVKATVVEKTLS 149
>TIGR_CMR|CBU_0385 [details] [associations]
symbol:CBU_0385 "ribosomal protein L21" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787
InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_819424.2 ProteinModelPortal:Q83EE0 SMR:Q83EE0
GeneID:1208268 KEGG:cbu:CBU_0385 PATRIC:17929467
BioCyc:CBUR227377:GJ7S-388-MONOMER Uniprot:Q83EE0
Length = 115
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +QY V G+ + ++L +V + + VL+V +IG P V +AAV
Sbjct: 1 MYAIIKTGGKQYRVTEGQMLKVEKL-AQDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAV 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
A V +QG GHRQ
Sbjct: 60 TAEVVDQGRQAKIEIIKFKRRKHHMKRQGHRQ 91
>TIGR_CMR|DET_1325 [details] [associations]
symbol:DET_1325 "ribosomal protein L21" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
HOGENOM:HOG000036264 OMA:KVTIIKF RefSeq:YP_182036.1
ProteinModelPortal:Q3Z6W3 STRING:Q3Z6W3 GeneID:3229420
KEGG:det:DET1325 PATRIC:21609679
BioCyc:DETH243164:GJNF-1326-MONOMER Uniprot:Q3Z6W3
Length = 132
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 28/93 (30%), Positives = 38/93 (40%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
I+A++ G +QY V PG+ + A D I L+KVL++ T IG P V A V
Sbjct: 6 IYAIIESGGKQYKVTPGQLVEVDLFDLAE-GDSIELDKVLMLNDGETVTIGSPTVPGAKV 64
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQV 195
A V GHRQ+
Sbjct: 65 TATVAGHIKGDKVFAYRFKAKSRNHKKTGHRQL 97
>TIGR_CMR|SPO_1990 [details] [associations]
symbol:SPO_1990 "ribosomal protein L21" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR003583 Pfam:PF00829 PROSITE:PS01169
SMART:SM00278 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006412 GO:GO:0006281 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 RefSeq:YP_167225.1
ProteinModelPortal:Q5LRY0 GeneID:3193713 KEGG:sil:SPO1990
PATRIC:23377311 OMA:QDELNGG ProtClustDB:PRK12278 Uniprot:Q5LRY0
Length = 193
Score = 95 (38.5 bits), Expect = 0.00073, P = 0.00073
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+FAV+ G +QY V G + ++L A+ +K+ N VL++G +G P+V AAV
Sbjct: 1 MFAVLKTGGKQYKVQAGDVLRVEKL-AADAGEKVQFNDVLMLGGDAPV-VGAPLVDGAAV 58
Query: 163 HAVVEEQ 169
A V +Q
Sbjct: 59 QAEVIDQ 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 200 135 0.00091 102 3 11 22 0.41 31
30 0.44 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 544 (58 KB)
Total size of DFA: 123 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.79u 0.10s 11.89t Elapsed: 00:00:00
Total cpu time: 11.79u 0.10s 11.89t Elapsed: 00:00:00
Start: Mon May 20 20:50:01 2013 End: Mon May 20 20:50:01 2013