BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028995
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana
GN=RPL21 PE=2 SV=1
Length = 220
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/199 (56%), Positives = 140/199 (70%), Gaps = 17/199 (8%)
Query: 4 ASSCATLALCSSLTSHCKISCQNPN------PHPQLSLSKSKLCSFPSPKL--YTRPTFS 55
ASS ATL+LCS+ ++HC ++ + + P L+L+K L F SP +R F+
Sbjct: 2 ASSSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAK-PLTGFLSPSTASTSRTAFT 60
Query: 56 FTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
KF++ S E EPE + EA ++V E +E+ KREEIFAV+M+G RQYI
Sbjct: 61 VAPKFAE------SVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVIMVGGRQYI 112
Query: 116 VFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKV 175
VFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN KV
Sbjct: 113 VFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKV 172
Query: 176 IVFKYKKKKNYRRNIGHRQ 194
+VFKYK KK YRRNIGHRQ
Sbjct: 173 VVFKYKPKKKYRRNIGHRQ 191
>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea
GN=RPL21 PE=1 SV=1
Length = 256
Score = 149 bits (377), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 90/97 (92%)
Query: 98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
P REEIFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+V
Sbjct: 118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIV 177
Query: 158 TNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
TNAAVHAVVEEQ L+ KVIVFKYKKKKNYRRNIGHRQ
Sbjct: 178 TNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQ 214
>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana
GN=RPL21M PE=2 SV=1
Length = 270
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 71/94 (75%)
Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
E +FA+V IGS Q+ V G I+T++LK ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197
Query: 161 AVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
VHAVVEE L+ KV++FK K++KNYRR GHRQ
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQ 231
>sp|Q54IF0|RM21_DICDI Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium
discoideum GN=mrpl21 PE=3 SV=1
Length = 172
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 80 EAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILN 139
EA A + E S + P ++ FAVV I +QY V G I T +++ +V + I+L+
Sbjct: 38 EAVAVTSEESYNSKNQFTPIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLD 96
Query: 140 KVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIG 191
KVLLVGTK T IGKP+++N VHA +EEQ V +FK+K +KNY+R G
Sbjct: 97 KVLLVGTKNETIIGKPIISNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTG 148
>sp|B8E0B4|RL21_DICTD 50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rplU PE=3 SV=1
Length = 105
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+F VV G +QY V G + ++LK ANV D+++L+KVLLVG + IG+P V A V
Sbjct: 1 MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V Q PKVIVFK+K+KK+YRR GHRQ
Sbjct: 60 IAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQ 91
>sp|B5YEQ3|RL21_DICT6 50S ribosomal protein L21 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplU PE=3 SV=1
Length = 105
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+F VV G +QY + G + ++L+ ANV D+++L+KVLLVG IG+P V A V
Sbjct: 1 MFVVVETGGKQYKLSVGSTVRVEKLQ-ANVGDEVVLDKVLLVGKDDEVLIGQPYVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V +Q PKVIVFK+K+KK+YRR GHRQ
Sbjct: 60 IAEVVKQDKYPKVIVFKFKRKKHYRRKYGHRQ 91
>sp|A0LPF7|RL21_SYNFM 50S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB) GN=rplU PE=3 SV=1
Length = 106
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G RQY V PG+ + ++L G V DK+ L++VLL T +G+PV+ N AV
Sbjct: 1 MYAVLKSGGRQYEVRPGQVVKVEKLLG-EVGDKVTLDQVLLFSDGTDIQVGQPVLANIAV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
+ EQG + K+++FK+K++K+YR+ GHRQ
Sbjct: 60 QGQIVEQGRHRKIVIFKHKRRKDYRKKQGHRQ 91
>sp|Q2RL02|RL21_MOOTA 50S ribosomal protein L21 OS=Moorella thermoacetica (strain ATCC
39073) GN=rplU PE=3 SV=1
Length = 104
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++M G +QY V G + ++L A V +K++L+KVL VG +G P V A V
Sbjct: 1 MYAIIMTGGKQYRVSEGDTLRVEKLP-AEVGEKVVLDKVLAVGEGADLKVGNPYVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V+ Q PK+IVFKYK KKNYRR GHRQ
Sbjct: 60 TASVQAQDKAPKIIVFKYKPKKNYRRKQGHRQ 91
>sp|A6LQR6|RL21_CLOB8 50S ribosomal protein L21 OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=rplU PE=3 SV=1
Length = 103
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G IY ++L A+V+ + LN+VL VGT+ +G PVV A V
Sbjct: 1 MYAVLATGGKQYRVQEGDVIYVEKLN-ADVDSTVELNEVLAVGTEEGIKVGAPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V QG KV+VFKYK KK+YRR GHRQ
Sbjct: 60 VAKVAAQGKAKKVVVFKYKSKKDYRRKNGHRQ 91
>sp|A5N6J9|RL21_CLOK5 50S ribosomal protein L21 OS=Clostridium kluyveri (strain ATCC 8527
/ DSM 555 / NCIMB 10680) GN=rplU PE=3 SV=1
Length = 103
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AVV G +QY V G IY ++L+ A V+ I L+KVL++ +GKPVV A V
Sbjct: 1 MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V +QG K+IVFKYK KK+YR+ GHRQ
Sbjct: 60 KAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQ 91
>sp|B9E018|RL21_CLOK1 50S ribosomal protein L21 OS=Clostridium kluyveri (strain NBRC
12016) GN=rplU PE=3 SV=1
Length = 103
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AVV G +QY V G IY ++L+ A V+ I L+KVL++ +GKPVV A V
Sbjct: 1 MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V +QG K+IVFKYK KK+YR+ GHRQ
Sbjct: 60 KAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQ 91
>sp|Q18B24|RL21_CLOD6 50S ribosomal protein L21 OS=Clostridium difficile (strain 630)
GN=rplU PE=3 SV=1
Length = 103
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A+V G +QY V G ++ ++L+ AN D + LN+VL +G PVV A+V
Sbjct: 1 MYAIVKTGGKQYKVSEGDVLFVEKLE-ANAGDVVTLNEVLACSKDGELKLGSPVVEGASV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V EQG KVIVFKYK KK+YRR GHRQ
Sbjct: 60 QAKVVEQGKAKKVIVFKYKAKKDYRRKQGHRQ 91
>sp|A4IRD1|RL21_GEOTN 50S ribosomal protein L21 OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=rplU PE=3 SV=1
Length = 102
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +Q V G+ IY ++L AN D + +KVL VG +T IG P V A V
Sbjct: 1 MYAIIETGGKQLKVQEGQEIYIEKLD-ANEGDTVTFDKVLFVGGETVK-IGNPTVEGATV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V++ G K+IVFKYK KKNYRR GHRQ
Sbjct: 59 TAKVQKHGRQKKIIVFKYKAKKNYRRKQGHRQ 90
>sp|Q5KWP1|RL21_GEOKA 50S ribosomal protein L21 OS=Geobacillus kaustophilus (strain
HTA426) GN=rplU PE=3 SV=1
Length = 102
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +Q V G+ IY ++L AN D + +KVL VG +T IG P V A V
Sbjct: 1 MYAIIETGGKQLKVEEGQEIYIEKLD-ANEGDTVTFDKVLFVGGETVK-IGNPTVEGATV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V++ G K+IVFKYK KKNYRR GHRQ
Sbjct: 59 TARVQKHGRQKKIIVFKYKAKKNYRRKQGHRQ 90
>sp|A5I669|RL21_CLOBH 50S ribosomal protein L21 OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=rplU PE=3 SV=1
Length = 104
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTT-TYIGKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A+V+ + L+ VLLVG T +GKP+V A
Sbjct: 1 MYAVVVTGGKQYKVAEGDILFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQ 92
>sp|A7FXU9|RL21_CLOB1 50S ribosomal protein L21 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=rplU PE=3 SV=1
Length = 104
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTT-TYIGKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A+V+ + L+ VLLVG T +GKP+V A
Sbjct: 1 MYAVVVTGGKQYKVAEGDILFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQ 92
>sp|C1FVW8|RL21_CLOBJ 50S ribosomal protein L21 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=rplU PE=3 SV=1
Length = 104
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTT-TYIGKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A+V+ + L+ VLLVG T +GKP+V A
Sbjct: 1 MYAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNEETVVGKPMVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQ 92
>sp|B1KZR6|RL21_CLOBM 50S ribosomal protein L21 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=rplU PE=3 SV=1
Length = 104
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTT-TYIGKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A+V+ + L+ VLLVG T +GKP+V A
Sbjct: 1 MYAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQ 92
>sp|A7GHK5|RL21_CLOBL 50S ribosomal protein L21 OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=rplU PE=3 SV=1
Length = 104
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTT-TYIGKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A+V+ + L+ VLLVG T +GKP+V A
Sbjct: 1 MYAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQ 92
>sp|B1ILY8|RL21_CLOBK 50S ribosomal protein L21 OS=Clostridium botulinum (strain Okra /
Type B1) GN=rplU PE=3 SV=1
Length = 104
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTT-TYIGKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A+V+ + L+ VLLVG T +GKP+V A
Sbjct: 1 MYAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQ 92
>sp|C3L3J6|RL21_CLOB6 50S ribosomal protein L21 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=rplU PE=3 SV=1
Length = 104
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTT-TYIGKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A+V+ + L+ VLLVG T +GKP+V A
Sbjct: 1 MYAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQ 92
>sp|Q24SN7|RL21_DESHY 50S ribosomal protein L21 OS=Desulfitobacterium hafniense (strain
Y51) GN=rplU PE=3 SV=1
Length = 103
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +Q+ V G+ ++ ++L ANV D + ++KVLLV +G PVV A
Sbjct: 1 MYAVIETGGKQFRVEEGKVLFVEKLD-ANVGDTVTIDKVLLVEKDGAVKVGTPVVDGAKA 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V E G K+IVFK K KKNYRR GHRQ
Sbjct: 60 LLKVVEHGKGEKIIVFKMKSKKNYRRKQGHRQ 91
>sp|B8FUS3|RL21_DESHD 50S ribosomal protein L21 OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=rplU PE=3 SV=1
Length = 103
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +Q+ V G+ ++ ++L ANV D + ++KVLLV +G PVV A
Sbjct: 1 MYAVIETGGKQFRVEEGKVLFVEKLD-ANVGDTVTIDKVLLVEKDGAVKVGTPVVDGAKA 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V E G K+IVFK K KKNYRR GHRQ
Sbjct: 60 LLKVVEHGKGEKIIVFKMKSKKNYRRKQGHRQ 91
>sp|A6TQJ2|RL21_ALKMQ 50S ribosomal protein L21 OS=Alkaliphilus metalliredigens (strain
QYMF) GN=rplU PE=3 SV=1
Length = 103
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +QY V G ++ ++L+ A+ +D + ++ VL V + IG P+V A V
Sbjct: 1 MYAIIETGGKQYRVQEGDTLFVEKLE-ASKDDVVTIDNVLAVSKDGSLTIGSPIVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V EQG K+IVFKYK KK+YRR GHRQ
Sbjct: 60 EAKVVEQGKGKKIIVFKYKPKKDYRRKQGHRQ 91
>sp|B2TK75|RL21_CLOBB 50S ribosomal protein L21 OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=rplU PE=3 SV=1
Length = 103
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G IY ++L A V+ + L +VL V +G PVV A V
Sbjct: 1 MYAVLATGGKQYRVQEGDVIYVEKLD-AEVDSTVELTEVLAVANDEGIKVGAPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V QG KVIVFKYK KK+YRR GHRQ
Sbjct: 60 TAKVLAQGKQKKVIVFKYKAKKDYRRKNGHRQ 91
>sp|Q747M9|RL21_GEOSL 50S ribosomal protein L21 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rplU PE=3 SV=1
Length = 102
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G F+ ++L+GA V D + L VL+VG +T IG P+V +A+V
Sbjct: 1 MYAVIRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGETVA-IGTPLVPSASV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
+ +QG + K++VFK K++KN+R+ GHRQ
Sbjct: 59 VGRIVDQGKDKKILVFKSKRRKNFRKMYGHRQ 90
>sp|B2V0A5|RL21_CLOBA 50S ribosomal protein L21 OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=rplU PE=3 SV=1
Length = 103
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G IY ++L A V+ + L +VL V +G PVV A V
Sbjct: 1 MYAVLATGGKQYRVQEGDVIYVEKLD-AEVDSTVELTEVLAVANGEGIKVGAPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V QG KVIVFKYK KK+YRR GHRQ
Sbjct: 60 TAKVLAQGKQKKVIVFKYKAKKDYRRKNGHRQ 91
>sp|Q88WN5|RL21_LACPL 50S ribosomal protein L21 OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=rplU PE=3 SV=1
Length = 102
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A+++ G +QY V G+ IY ++L A DK+ ++V+ VG TT +G P V A V
Sbjct: 1 MYAIIVTGGKQYKVEAGQAIYVEKLD-AAAGDKVTFDQVVFVGGDTTK-VGTPTVDGATV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
VE+QG + KV+ FKYK KK GHRQ
Sbjct: 59 EGTVEKQGRDRKVVTFKYKAKKGQHTKKGHRQ 90
>sp|B8FM66|RL21_DESAA 50S ribosomal protein L21 OS=Desulfatibacillum alkenivorans (strain
AK-01) GN=rplU PE=3 SV=1
Length = 105
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G + ++L G V D + L++VLL +G+P V N AV
Sbjct: 1 MYAVIATGGKQYKVGEGEIVRVEKLPG-EVGDTVRLDQVLLFSDGENVKVGQPTVENVAV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A + EQG KV+VF++K++K YR+ GHRQ
Sbjct: 60 DAQIVEQGKAKKVLVFRFKRRKGYRKKQGHRQ 91
>sp|B6IR01|RL21_RHOCS 50S ribosomal protein L21 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplU PE=3 SV=1
Length = 103
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+FAV+ G +QY V G I ++L A+ + L+ VL+V T IG PVV AAV
Sbjct: 1 MFAVIRTGGKQYKVANGDVIKVEKLV-ADAGATVTLDDVLMVSDAGKTTIGTPVVQGAAV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVKDLS 199
A V Q PK+I+FK K+++NYRR GHRQ DL+
Sbjct: 60 TAEVVAQSRGPKIIIFKKKRRQNYRRKNGHRQ--DLT 94
>sp|Q1GZ51|RL21_METFK 50S ribosomal protein L21 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rplU PE=3 SV=1
Length = 104
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G + ++L G V +I L+KVLLV T IG P+V A+V
Sbjct: 1 MYAVIKTGGKQYRVAAGDKLKVEKLAG-EVGSEITLDKVLLVSDGDNTTIGSPLVQGASV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V G KV++FK +++K+YR+ GHRQ
Sbjct: 60 QAKVVAHGRGDKVLIFKMRRRKHYRKTQGHRQ 91
>sp|A8MHL1|RL21_ALKOO 50S ribosomal protein L21 OS=Alkaliphilus oremlandii (strain
OhILAs) GN=rplU PE=3 SV=1
Length = 103
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +QY V G ++ ++L AN D + ++ VL V +G P+V A V
Sbjct: 1 MYAIIETGGKQYRVQEGDTLFVEKLD-ANQGDIVTIDSVLAVSKDGNLTVGAPMVAGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V EQG K+I+FKYK KK+YRR GHRQ
Sbjct: 60 EAKVLEQGKAKKIIIFKYKPKKDYRRKQGHRQ 91
>sp|B2GD73|RL21_LACF3 50S ribosomal protein L21 OS=Lactobacillus fermentum (strain NBRC
3956 / LMG 18251) GN=rplU PE=3 SV=1
Length = 102
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A+++ G +QY V G+ IY ++L A DK+ +KV+ VG T IG P V A+V
Sbjct: 1 MYAIIVTGGKQYKVEAGQAIYVEKLD-AQAGDKVTFDKVVFVGGDDTK-IGTPFVDGASV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V++QG KV+ FKYK KK+ GHRQ
Sbjct: 59 EGTVDKQGKEKKVVTFKYKPKKHTHTKQGHRQ 90
>sp|C5D5G9|RL21_GEOSW 50S ribosomal protein L21 OS=Geobacillus sp. (strain WCH70) GN=rplU
PE=3 SV=1
Length = 102
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +Q V G+ IY +++ A + + +KVL VG +T IG P V A V
Sbjct: 1 MYAIIETGGKQIKVEEGQEIYIEKID-AQEGETVTFDKVLFVGGETVK-IGNPTVEGATV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V++ G K+IVFKYK KKNYRR GHRQ
Sbjct: 59 TAKVQKHGRQKKIIVFKYKAKKNYRRKQGHRQ 90
>sp|Q5WES3|RL21_BACSK 50S ribosomal protein L21 OS=Bacillus clausii (strain KSM-K16)
GN=rplU PE=3 SV=1
Length = 102
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +Q V G+ IY ++L A +++ +KVL VG ++ +G P V A+V
Sbjct: 1 MYAIIETGGKQIKVEEGQEIYVEKLD-AEAGEEVSFDKVLFVGGESAK-VGAPFVEGASV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
VE+ G N K+IV+K K KKNYRR GHRQ
Sbjct: 59 TGTVEKHGRNKKIIVYKMKAKKNYRRKQGHRQ 90
>sp|A6LLU6|RL21_THEM4 50S ribosomal protein L21 OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=rplU PE=3 SV=1
Length = 106
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGT-KTTTYIGKPVVTNAA 161
++A+V G +QY V PG+ +T+R+ G N + I L+KVL+V T + +GKP + N +
Sbjct: 1 MYAIVESGGKQYRVEPGKVFFTERILGKNEGEAITLDKVLMVKTDEGKLLVGKPYLENVS 60
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
+ + E G KV+V K++ +KNY+R GHRQ
Sbjct: 61 ITGTIVEHGRARKVLVGKFRPRKNYKRIKGHRQ 93
>sp|B1I4P8|RL21_DESAP 50S ribosomal protein L21 OS=Desulforudis audaxviator (strain
MP104C) GN=rplU PE=3 SV=1
Length = 103
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVND--KIILNKVLLVGTKTTTYIGKPVVTNA 160
++A++ G +Q V G + ++L V D +++ ++VLLV T+ IG+P+V A
Sbjct: 1 MYAIIETGGKQLCVREGDTVRVEKL---AVEDGAEVVFDRVLLVSTEEGLKIGRPLVLGA 57
Query: 161 AVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V V++QG K+IVFKYK KKNYRR GHRQ
Sbjct: 58 RVTGRVQKQGRARKIIVFKYKAKKNYRRKQGHRQ 91
>sp|A5GD27|RL21_GEOUR 50S ribosomal protein L21 OS=Geobacter uraniireducens (strain Rf4)
GN=rplU PE=3 SV=1
Length = 102
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AVV G +QY V G F+ ++L+GA V D + L++VL+VG IG P+V +A+V
Sbjct: 1 MYAVVRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELSEVLMVGGDKVA-IGTPLVPSASV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVK 196
+ EQG + K++VFK K++K+ R+ GHRQ++
Sbjct: 59 VGKIVEQGKDKKILVFKSKRRKDSRKLNGHRQLR 92
>sp|B2A6B3|RL21_NATTJ 50S ribosomal protein L21 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplU PE=3
SV=1
Length = 105
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G + ++L +++ +KVLLV +G PV+ A V
Sbjct: 1 MYAVIETGGKQYKVSEGDVLEIEKL-SQETEEQVTFDKVLLVKDDENVKVGTPVLEEAQV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V E G KV VFKYK KKNYRR GHRQ
Sbjct: 60 EGTVLEHGKGEKVTVFKYKPKKNYRRKQGHRQ 91
>sp|A9IM54|RL21_BART1 50S ribosomal protein L21 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplU PE=3 SV=1
Length = 158
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+FAV+ G +QY + + + +++ G N D + N VL+VG + + IG PVV +A V
Sbjct: 1 MFAVIKTGGKQYRIVANQVVKVEKVIG-NAGDVVEFNDVLMVGQEGSAVIGTPVVADARV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A + EQ KVI FK ++++N +R GHRQ
Sbjct: 60 TAEILEQARGRKVIAFKKRRRQNSKRTRGHRQ 91
>sp|Q2VZU4|RL21_MAGSA 50S ribosomal protein L21 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplU PE=3 SV=1
Length = 100
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+FAV+ G +QY V G I ++L G +++L++VL+VG K IG PVV A+V
Sbjct: 1 MFAVIQTGGKQYKVASGDVIRVEKLAG-EAGAEVVLDQVLMVGDK----IGVPVVAGASV 55
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVKDLS 199
A V Q K+IVFK ++++N RR GHRQ DL+
Sbjct: 56 KATVVAQARGEKIIVFKKRRRQNSRRKNGHRQ--DLT 90
>sp|Q0SR51|RL21_CLOPS 50S ribosomal protein L21 OS=Clostridium perfringens (strain SM101
/ Type A) GN=rplU PE=3 SV=1
Length = 103
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G ++ ++L A V+ + L +VL V +G PVV A V
Sbjct: 1 MYAVLTTGGKQYRVQEGDVLFVEKLN-AEVDSTVELTEVLAVAKDGEIKVGAPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V QG KV+VFKYK+KK+YRR GHRQ
Sbjct: 60 VAKVLAQGKAKKVVVFKYKRKKDYRRKNGHRQ 91
>sp|Q8XII9|RL21_CLOPE 50S ribosomal protein L21 OS=Clostridium perfringens (strain 13 /
Type A) GN=rplU PE=3 SV=1
Length = 103
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G ++ ++L A V+ + L +VL V +G PVV A V
Sbjct: 1 MYAVLTTGGKQYRVQEGDVLFVEKLN-AEVDSTVELTEVLAVAKDGEIKVGAPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V QG KV+VFKYK+KK+YRR GHRQ
Sbjct: 60 VAKVLAQGKAKKVVVFKYKRKKDYRRKNGHRQ 91
>sp|Q0TNI2|RL21_CLOP1 50S ribosomal protein L21 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=rplU PE=3 SV=1
Length = 103
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G ++ ++L A V+ + L +VL V +G PVV A V
Sbjct: 1 MYAVLTTGGKQYRVQEGDVLFVEKLN-AEVDSTVELTEVLAVAKDGEIKVGAPVVEGAKV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V QG KV+VFKYK+KK+YRR GHRQ
Sbjct: 60 VAKVLAQGKAKKVVVFKYKRKKDYRRKNGHRQ 91
>sp|B9M3W1|RL21_GEOSF 50S ribosomal protein L21 OS=Geobacter sp. (strain FRC-32) GN=rplU
PE=3 SV=1
Length = 102
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AVV G +QY V G F+ ++L+GA V D + L++VL+VG IG P+V +A+V
Sbjct: 1 MYAVVRTGGKQYKVSEGDFLKVEKLEGA-VGDTVNLSEVLMVGGDKVA-IGTPLVPSASV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVK 196
+ EQG + K++VFK K++K+ R+ GHRQ++
Sbjct: 59 VGKIVEQGKDKKILVFKSKRRKDSRKLNGHRQLR 92
>sp|B2G858|RL21_LACRJ 50S ribosomal protein L21 OS=Lactobacillus reuteri (strain JCM
1112) GN=rplU PE=3 SV=1
Length = 102
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A+++ G +QY V G IY ++L A DK+ ++V+ VG T IG PVV A+V
Sbjct: 1 MYAIIVTGGKQYKVEEGASIYVEKLD-AKEGDKVTFDQVIFVGGDDTK-IGTPVVDGASV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V++QG KV+ FKYK KK+ GHRQ
Sbjct: 59 EGTVDKQGKEKKVVTFKYKPKKHTHTKQGHRQ 90
>sp|A5VKS5|RL21_LACRD 50S ribosomal protein L21 OS=Lactobacillus reuteri (strain DSM
20016) GN=rplU PE=3 SV=1
Length = 102
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A+++ G +QY V G IY ++L A DK+ ++V+ VG T IG PVV A+V
Sbjct: 1 MYAIIVTGGKQYKVEEGASIYVEKLD-AKEGDKVTFDQVIFVGGDDTK-IGTPVVDGASV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V++QG KV+ FKYK KK+ GHRQ
Sbjct: 59 EGTVDKQGKEKKVVTFKYKPKKHTHTKQGHRQ 90
>sp|B9E724|RL21_MACCJ 50S ribosomal protein L21 OS=Macrococcus caseolyticus (strain
JCSC5402) GN=rplU PE=3 SV=1
Length = 102
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+FA++ G +Q V G+ I+ ++L A ++VL+VG +T +G PVV A V
Sbjct: 1 MFAIIETGGKQLKVEQGQEIWVEKLN-AEEGSTFTFDQVLMVGGETVK-VGSPVVEGATV 58
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A VE+ G K+ VFKYK KKNY+R GHRQ
Sbjct: 59 TAKVEKHGRGKKITVFKYKPKKNYKRKQGHRQ 90
>sp|Q892N4|RL21_CLOTE 50S ribosomal protein L21 OS=Clostridium tetani (strain
Massachusetts / E88) GN=rplU PE=3 SV=2
Length = 104
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYI-GKPVVTNAA 161
++AVV+ G +QY V G ++ ++L A V+ I L+ VL + ++ GKPVV A
Sbjct: 1 MYAVVVTGGKQYKVTEGDVLFVEKLD-AEVDAAIELDNVLAISKDNGEFVVGKPVVEGAK 59
Query: 162 VHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
V A V +QG KV+VFKYK KK+YR+ GHRQ
Sbjct: 60 VTAKVLKQGKAKKVVVFKYKPKKHYRKKQGHRQ 92
>sp|A1KAC8|RL21_AZOSB 50S ribosomal protein L21 OS=Azoarcus sp. (strain BH72) GN=rplU
PE=3 SV=1
Length = 103
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G I +++ A+V +I +++VL+VG + IG PVV+ AAV
Sbjct: 1 MYAVIKTGGKQYRVAAGEKIKVEQIP-ADVGSEITIDQVLMVGEGESVKIGTPVVSGAAV 59
Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
A V G + KV +FK +++K+Y+++ GHRQ
Sbjct: 60 KATVVSHGRHDKVKIFKMRRRKHYQKHQGHRQ 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,803,965
Number of Sequences: 539616
Number of extensions: 3038739
Number of successful extensions: 14963
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 13205
Number of HSP's gapped (non-prelim): 1264
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)