Query 028995
Match_columns 200
No_of_seqs 172 out of 1086
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_T Ribosomal protein L21; 100.0 3.3E-56 1.1E-60 387.8 -1.3 188 9-198 5-219 (257)
2 3r8s_R 50S ribosomal protein L 100.0 5.1E-43 1.8E-47 270.1 10.5 95 103-198 1-95 (103)
3 3v2d_V 50S ribosomal protein L 100.0 5E-42 1.7E-46 263.9 11.2 93 103-198 1-93 (101)
4 2zjr_O 50S ribosomal protein L 100.0 2E-41 6.8E-46 260.0 2.8 92 103-198 1-92 (100)
5 2lc4_A PILP protein; type IV p 77.1 2.6 9E-05 32.3 4.1 23 100-122 40-62 (111)
6 2y4x_A PILP protein; biosynthe 76.1 3 0.0001 30.9 4.1 23 100-122 33-55 (93)
7 2ivw_A PILP pilot protein; lip 72.9 3.6 0.00012 31.7 3.9 23 100-122 36-58 (113)
8 4av2_M PILP protein, type IV p 71.7 4.2 0.00014 33.3 4.4 23 100-122 104-126 (181)
9 2ozj_A Cupin 2, conserved barr 69.0 5.6 0.00019 28.0 4.0 21 106-126 70-90 (114)
10 4i4a_A Similar to unknown prot 65.9 6.7 0.00023 28.0 4.0 21 106-126 66-86 (128)
11 2wg5_A General control protein 65.0 2.8 9.6E-05 31.5 1.8 34 104-140 51-85 (109)
12 3lwc_A Uncharacterized protein 64.2 7.6 0.00026 28.7 4.1 21 106-126 71-91 (119)
13 1v70_A Probable antibiotics sy 63.8 8.7 0.0003 25.6 4.0 21 106-126 61-81 (105)
14 3fjs_A Uncharacterized protein 62.8 6.8 0.00023 28.2 3.5 20 107-126 69-88 (114)
15 2opk_A Hypothetical protein; p 60.5 5.2 0.00018 28.9 2.5 22 105-126 64-87 (112)
16 2arc_A ARAC, arabinose operon 60.4 9.7 0.00033 27.8 4.0 22 105-126 49-70 (164)
17 2gu9_A Tetracenomycin polyketi 60.2 8.6 0.00029 26.3 3.5 20 107-126 57-76 (113)
18 2pfw_A Cupin 2, conserved barr 59.4 11 0.00038 26.3 4.0 21 106-126 66-86 (116)
19 3d82_A Cupin 2, conserved barr 57.9 6.8 0.00023 26.5 2.6 21 106-126 62-82 (102)
20 3cew_A Uncharacterized cupin p 57.5 9.4 0.00032 27.3 3.5 22 105-126 59-80 (125)
21 1yhf_A Hypothetical protein SP 56.8 13 0.00043 25.9 4.0 21 106-126 72-92 (115)
22 1o5u_A Novel thermotoga mariti 56.7 10 0.00036 27.3 3.6 22 105-126 60-82 (101)
23 3l2h_A Putative sugar phosphat 56.5 12 0.0004 28.2 4.0 21 106-126 80-100 (162)
24 2pyt_A Ethanolamine utilizatio 56.0 12 0.00042 28.2 4.0 21 106-126 87-107 (133)
25 4axo_A EUTQ, ethanolamine util 55.3 12 0.00041 29.5 4.0 20 107-126 97-116 (151)
26 3kgz_A Cupin 2 conserved barre 54.6 13 0.00043 28.9 4.0 22 105-126 75-96 (156)
27 3ibm_A Cupin 2, conserved barr 54.4 13 0.00044 28.9 4.0 21 106-126 88-108 (167)
28 4h7l_A Uncharacterized protein 53.8 6.9 0.00023 31.4 2.4 26 101-126 67-100 (157)
29 2vpv_A Protein MIF2, MIF2P; nu 52.6 14 0.00047 29.7 4.0 20 107-126 123-142 (166)
30 4e2g_A Cupin 2 conserved barre 51.8 14 0.00047 26.2 3.5 20 106-125 73-92 (126)
31 2i45_A Hypothetical protein; n 51.5 12 0.00041 26.0 3.1 21 106-126 60-81 (107)
32 1o4t_A Putative oxalate decarb 51.4 13 0.00045 27.3 3.5 20 106-125 90-109 (133)
33 3h43_A Proteasome-activating n 50.7 5.8 0.0002 28.6 1.4 35 103-140 31-66 (85)
34 1y9q_A Transcriptional regulat 50.6 16 0.00054 28.2 4.0 21 106-126 138-158 (192)
35 3h8u_A Uncharacterized conserv 48.9 11 0.00039 26.7 2.7 22 105-126 71-93 (125)
36 2o8q_A Hypothetical protein; c 48.8 17 0.00057 26.2 3.6 21 106-126 76-97 (134)
37 3jzv_A Uncharacterized protein 47.6 19 0.00065 28.2 4.0 20 107-126 86-105 (166)
38 4e2q_A Ureidoglycine aminohydr 47.6 17 0.00057 31.3 4.0 22 105-126 218-239 (266)
39 2b8m_A Hypothetical protein MJ 47.5 11 0.00037 26.6 2.4 21 105-125 58-79 (117)
40 3ht1_A REMF protein; cupin fol 45.9 16 0.00056 26.2 3.2 21 106-126 71-93 (145)
41 1sef_A Conserved hypothetical 45.6 19 0.00066 29.9 4.0 22 105-126 214-235 (274)
42 3i7d_A Sugar phosphate isomera 43.7 24 0.00083 27.0 4.0 21 106-126 77-97 (163)
43 1vj2_A Novel manganese-contain 42.5 16 0.00054 26.4 2.6 21 106-126 80-100 (126)
44 2q30_A Uncharacterized protein 42.4 13 0.00044 25.4 2.1 20 107-126 68-88 (110)
45 3ddy_A Lumazine protein, LUMP; 41.9 22 0.00074 29.2 3.6 82 103-188 48-130 (186)
46 2wfw_A ARC; ATP-binding protei 41.3 88 0.003 25.2 7.1 38 104-144 21-58 (153)
47 3bcw_A Uncharacterized protein 41.0 22 0.00074 26.6 3.3 20 107-126 81-101 (123)
48 3rns_A Cupin 2 conserved barre 40.8 22 0.00074 28.7 3.5 22 105-126 184-205 (227)
49 2lnv_A General secretion pathw 40.6 19 0.00065 27.2 2.9 26 98-123 35-60 (104)
50 1rc6_A Hypothetical protein YL 40.4 18 0.00063 29.6 3.0 21 105-125 211-231 (261)
51 2fqp_A Hypothetical protein BP 39.4 28 0.00096 23.8 3.5 21 105-125 50-72 (97)
52 2bnm_A Epoxidase; oxidoreducta 38.9 32 0.0011 26.4 4.0 20 107-126 153-176 (198)
53 3m9b_A Proteasome-associated A 38.7 26 0.00089 30.4 3.8 36 102-140 110-145 (251)
54 3h7j_A Bacilysin biosynthesis 38.6 30 0.001 28.1 4.0 22 105-126 177-198 (243)
55 1sfn_A Conserved hypothetical 38.4 30 0.001 28.4 4.0 39 106-146 198-239 (246)
56 1lr5_A Auxin binding protein 1 36.2 32 0.0011 25.8 3.6 21 106-126 73-102 (163)
57 3oss_C Type 2 secretion system 34.4 27 0.00094 24.3 2.7 39 102-146 19-59 (68)
58 2f4p_A Hypothetical protein TM 33.7 29 0.00099 26.0 3.0 21 106-126 80-101 (147)
59 1hf2_A MINC, septum site-deter 32.9 1.6E+02 0.0055 23.8 7.6 54 110-167 110-165 (210)
60 3rns_A Cupin 2 conserved barre 32.4 30 0.001 27.9 3.0 20 106-125 69-88 (227)
61 1y3t_A Hypothetical protein YX 31.9 44 0.0015 27.7 4.0 20 107-126 252-271 (337)
62 1rc6_A Hypothetical protein YL 30.9 38 0.0013 27.7 3.5 20 106-125 93-112 (261)
63 2oa2_A BH2720 protein; 1017534 30.6 28 0.00096 25.8 2.4 20 106-125 76-101 (148)
64 2ztd_A Holliday junction ATP-d 29.9 62 0.0021 26.9 4.6 46 102-153 30-77 (212)
65 1y3t_A Hypothetical protein YX 28.5 54 0.0018 27.1 4.0 21 106-126 79-99 (337)
66 1sq4_A GLXB, glyoxylate-induce 28.2 38 0.0013 28.5 3.0 21 106-126 102-122 (278)
67 1sq4_A GLXB, glyoxylate-induce 27.1 56 0.0019 27.4 3.9 39 106-145 224-265 (278)
68 1sfn_A Conserved hypothetical 26.8 37 0.0013 27.8 2.7 21 106-126 80-100 (246)
69 1zrr_A E-2/E-2' protein; nicke 26.8 24 0.00083 28.4 1.5 18 109-126 117-136 (179)
70 1sef_A Conserved hypothetical 25.2 40 0.0014 27.9 2.6 20 106-125 96-115 (274)
71 3bs1_A Accessory gene regulato 25.1 89 0.003 21.5 4.1 26 102-127 5-30 (103)
72 1dgw_A Canavalin; duplicated s 23.0 47 0.0016 25.9 2.5 16 111-126 82-97 (178)
73 1juh_A Quercetin 2,3-dioxygena 23.0 55 0.0019 28.3 3.2 21 106-126 284-305 (350)
74 3bu7_A Gentisate 1,2-dioxygena 21.2 82 0.0028 28.4 4.0 20 107-126 327-346 (394)
75 1kca_A Repressor protein CI; g 21.1 59 0.002 23.4 2.6 22 115-136 32-53 (109)
76 1x82_A Glucose-6-phosphate iso 20.8 47 0.0016 26.1 2.1 19 107-125 109-132 (190)
77 3k2z_A LEXA repressor; winged 20.2 2.6E+02 0.009 21.6 6.4 35 102-137 108-145 (196)
No 1
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.3e-56 Score=387.81 Aligned_cols=188 Identities=55% Similarity=0.741 Sum_probs=94.4
Q ss_pred HHHH-hhhcCcccccCCC-CCCCCCCCcccCCCCCCC-CCC-C-------cccCCCcccCcccC-----CCCCCC-----
Q 028995 9 TLAL-CSSLTSHCKISCQ-NPNPHPQLSLSKSKLCSF-PSP-K-------LYTRPTFSFTHKFS-----QTEPPP----- 67 (200)
Q Consensus 9 ~~~~-c~s~~~~c~~~~~-~~~~~~~~~~s~~~~~~~-~~t-~-------~~~r~~~~~~~~~~-----~~~~~~----- 67 (200)
+++| ||||++||+|+++ ||++..++.+|+|++|.+ |++ + ..+|++|++.|+++ |++.++
T Consensus 5 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (257)
T 3bbo_T 5 TLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQ 84 (257)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeeeccceeeeeccCCCCCccccccccCCccccccCCCcccccccccccccCcccccchhhhhhchhhhccccccCcc
Confidence 4677 9999999999999 888888888999999877 655 2 23599999999988 666521
Q ss_pred -C-CCCCCChhhhhhcccCCchHHH-HHh--hccCCCCC-CeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeE
Q 028995 68 -V-SEPEVEPEAALEAEAEPTTEVV-ESA--AKEEPKRE-EIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKV 141 (200)
Q Consensus 68 -~-~~~~~~~~~~~~~~~~p~~~~~-~~~--~~~~~~~~-~mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~V 141 (200)
+ .+|+. +++++|+---+.+++ ..+ +.+..++. .|||||++|||||||++||+|+||+|+++++||+|+|++|
T Consensus 85 ~~~~~p~~--~~~~~~~~~~~~e~~~~~~~~~~~~~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkV 162 (257)
T 3bbo_T 85 LSDVLPDD--FQAPEPGTPEYNDIINQFLPKKGPPPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKV 162 (257)
T ss_dssp -----------------------------------------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTC
T ss_pred eeecCCCc--cCCcccccccccccccccccccccCCCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEE
Confidence 1 22222 233344411123332 222 22433444 4999999999999999999999999977899999999999
Q ss_pred EEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecCCCCcccccCCcCCccc
Q 028995 142 LLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVKDL 198 (200)
Q Consensus 142 Llvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~KrRK~yrRk~GHRQ~~T~ 198 (200)
||++++++++||.|||+|++|+|+|++|+||+||+||||||||+|||++||||+||+
T Consensus 163 LlVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKIiVFK~KRRK~yRRk~GHRQ~~T~ 219 (257)
T 3bbo_T 163 LLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITR 219 (257)
T ss_dssp CCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCCEEECCTTTTCCEEECCCCCCCC
T ss_pred EEEeCCCCeEeCCcccCCCEEEEEEEeecCCCcEEEEEeCCCCCCcCCCCccCCcEE
Confidence 999999999999999999999999999999999999999999999999999999996
No 2
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=100.00 E-value=5.1e-43 Score=270.08 Aligned_cols=95 Identities=27% Similarity=0.473 Sum_probs=93.4
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK 182 (200)
Q Consensus 103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr 182 (200)
|||||++|||||+|++||+|+||+|+ +++||+|+|++|||+++++++.+|.|||++|+|+|+|++|+|++||+||||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 79 (103)
T 3r8s_R 1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR 79 (103)
T ss_dssp CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence 99999999999999999999999995 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCcCCccc
Q 028995 183 KKNYRRNIGHRQVKDL 198 (200)
Q Consensus 183 RK~yrRk~GHRQ~~T~ 198 (200)
||+|||++||||+||+
T Consensus 80 rK~yrrk~GHRQ~~T~ 95 (103)
T 3r8s_R 80 RKHYRKQQGHRQWFTD 95 (103)
T ss_dssp TTTEEEEEEECCEEEE
T ss_pred CCCccCCCcccCCeEE
Confidence 9999999999999996
No 3
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=100.00 E-value=5e-42 Score=263.91 Aligned_cols=93 Identities=41% Similarity=0.596 Sum_probs=90.1
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK 182 (200)
Q Consensus 103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr 182 (200)
|||||++|||||+|++||+|+||+|+ +++||+|+|+ |||+++++ +.+|.|+|++|+|+|+|++|+|++||++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 77 (101)
T 3v2d_V 1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA 77 (101)
T ss_dssp CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence 99999999999999999999999995 8999999999 99998654 999999999999999999999999999999999
Q ss_pred CCCcccccCCcCCccc
Q 028995 183 KKNYRRNIGHRQVKDL 198 (200)
Q Consensus 183 RK~yrRk~GHRQ~~T~ 198 (200)
||+|||++||||+||+
T Consensus 78 rK~yrrk~GHRQ~~T~ 93 (101)
T 3v2d_V 78 KVQYRRKKGHRQPYTE 93 (101)
T ss_dssp TTTEEEEEEECCEEEE
T ss_pred CCCcCCCCcccCCeEE
Confidence 9999999999999996
No 4
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=100.00 E-value=2e-41 Score=260.01 Aligned_cols=92 Identities=36% Similarity=0.548 Sum_probs=86.2
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK 182 (200)
Q Consensus 103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr 182 (200)
|||||++|||||||++||+|+||+|+ +++||+|+|+ |||+++ +++.+|.| |++|+|+|+|++|+|++|+++|||||
T Consensus 1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr 76 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS 76 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence 99999999999999999999999996 8999999999 999998 88999999 99999999999999999999999999
Q ss_pred CCCcccccCCcCCccc
Q 028995 183 KKNYRRNIGHRQVKDL 198 (200)
Q Consensus 183 RK~yrRk~GHRQ~~T~ 198 (200)
||+|||++||||+||+
T Consensus 77 rK~yrrk~GHRQ~~T~ 92 (100)
T 2zjr_O 77 GVQYRRRTGHRQNFTA 92 (100)
T ss_dssp SSCCEEEEEECCBEEE
T ss_pred CCCCcCCCCccCCcEE
Confidence 9999999999999996
No 5
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=77.07 E-value=2.6 Score=32.33 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCCeEEEEEECCEEEEEcCCCEE
Q 028995 100 REEIFAVVMIGSRQYIVFPGRFI 122 (200)
Q Consensus 100 ~~~mYAIIeiGGKQYkV~~Gd~I 122 (200)
...++|+|+..|+=|+|..|++|
T Consensus 40 ~~~~~ALV~~dG~vyrVk~G~yl 62 (111)
T 2lc4_A 40 AQGTFALVKGAGGVHRVRVGDYL 62 (111)
T ss_dssp TTEEEEEEEETTEEEEEETTCEE
T ss_pred CCeEEEEEEeCCcEEEEccCCEe
Confidence 45699999999999999999998
No 6
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=76.11 E-value=3 Score=30.86 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCCeEEEEEECCEEEEEcCCCEE
Q 028995 100 REEIFAVVMIGSRQYIVFPGRFI 122 (200)
Q Consensus 100 ~~~mYAIIeiGGKQYkV~~Gd~I 122 (200)
...++|+|+..|+=|+|..|++|
T Consensus 33 ~~~~~ALV~~dg~v~~V~~G~yi 55 (93)
T 2y4x_A 33 AQGTFALVKGAGGVHRVRVGDYL 55 (93)
T ss_dssp TTEEEEEEEETTEEEEECTTCEE
T ss_pred CCeEEEEEEeCCCEEEEccCCEe
Confidence 45699999999999999999998
No 7
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=72.88 E-value=3.6 Score=31.67 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCCeEEEEEECCEEEEEcCCCEE
Q 028995 100 REEIFAVVMIGSRQYIVFPGRFI 122 (200)
Q Consensus 100 ~~~mYAIIeiGGKQYkV~~Gd~I 122 (200)
....||+|+..|+=|+|..|++|
T Consensus 36 ~~~~~ALV~~dG~vyrVk~G~yi 58 (113)
T 2ivw_A 36 GQKVSGFIEAEGYVYTVGVGNYL 58 (113)
T ss_dssp SSSEEEEEEETTEEEEECSSEEE
T ss_pred CCeEEEEEEeCCcEEEEccCCEe
Confidence 46699999999999999999998
No 8
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=71.74 E-value=4.2 Score=33.28 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=21.4
Q ss_pred CCCeEEEEEECCEEEEEcCCCEE
Q 028995 100 REEIFAVVMIGSRQYIVFPGRFI 122 (200)
Q Consensus 100 ~~~mYAIIeiGGKQYkV~~Gd~I 122 (200)
...+||+|+..|+=|+|..|++|
T Consensus 104 ~~~~~alv~~dg~v~~V~~G~yl 126 (181)
T 4av2_M 104 GQKVSGFIEAEGYVYTVGVGNYL 126 (181)
T ss_dssp SSCCEEEEEETTEEEEECSSEEE
T ss_pred CCEEEEEEecCCCEEEEccCCEe
Confidence 56799999999999999999987
No 9
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=69.00 E-value=5.6 Score=27.99 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=18.4
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.+.++.
T Consensus 70 ~~~i~~~~~~l~~Gd~i~i~~ 90 (114)
T 2ozj_A 70 VITFDDQKIDLVPEDVLMVPA 90 (114)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEecCCCEEEECC
Confidence 467899999999999999873
No 10
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=65.89 E-value=6.7 Score=27.98 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.3
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.+.++.
T Consensus 66 ~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 66 IIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEECCCcEEEECC
Confidence 456899999999999999974
No 11
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=65.04 E-value=2.8 Score=31.48 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=28.0
Q ss_pred EEEEEEC-CEEEEEcCCCEEEEcccCCCCCCCeEEeee
Q 028995 104 FAVVMIG-SRQYIVFPGRFIYTQRLKGANVNDKIILNK 140 (200)
Q Consensus 104 YAIIeiG-GKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~ 140 (200)
.|||+++ |..|.|.....|+.+.| ++|+.|-|++
T Consensus 51 ~~iVk~s~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 85 (109)
T 2wg5_A 51 RVVVKSSTGPKFVVNTSQYINEEEL---KPGARVALNQ 85 (109)
T ss_dssp CEEEEETTSCEEEECBCTTSCTTTC---CTTCEEEEET
T ss_pred EEEEEeCCCCEEEEEcccccCHHHC---CCCCEEEECC
Confidence 3788887 89999999998887776 5999988764
No 12
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=64.19 E-value=7.6 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.2
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.++++.
T Consensus 71 ~~~~~g~~~~l~~GD~v~ip~ 91 (119)
T 3lwc_A 71 SVSTDGETVTAGPGEIVYMPK 91 (119)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 467899999999999999874
No 13
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=63.75 E-value=8.7 Score=25.60 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.7
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.+.++.
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~ 81 (105)
T 1v70_A 61 VVRVGEEEALLAPGMAAFAPA 81 (105)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 367889999999999998873
No 14
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=62.76 E-value=6.8 Score=28.21 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=18.2
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 028995 107 VMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGGKQYkV~~Gd~I~Ver 126 (200)
+.++|+.|.+.+||.|.++.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~ 88 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGA 88 (114)
T ss_dssp EEETTEEEEECTTEEEEECT
T ss_pred EEECCEEEEECCCCEEEECC
Confidence 68999999999999999984
No 15
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=60.45 E-value=5.2 Score=28.91 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEECCEE--EEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQ--YIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQ--YkV~~Gd~I~Ver 126 (200)
+.+.++|+. |.+.+||.++++.
T Consensus 64 ~~l~~~~~~~~~~l~~Gd~i~ipa 87 (112)
T 2opk_A 64 AGIECEGDTAPRVMRPGDWLHVPA 87 (112)
T ss_dssp EEEEETTCSSCEEECTTEEEEECT
T ss_pred EEEEECCEEEEEEECCCCEEEECC
Confidence 457889998 9999999999983
No 16
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=60.38 E-value=9.7 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ver 126 (200)
+.+.++|+.|.+.+||.+.++.
T Consensus 49 ~~~~i~~~~~~l~~Gd~~~i~p 70 (164)
T 2arc_A 49 GVVKNQGREFVCRPGDILLFPP 70 (164)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEecCCeEEEEcC
Confidence 3457899999999999999983
No 17
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=60.19 E-value=8.6 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=17.7
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 028995 107 VMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGGKQYkV~~Gd~I~Ver 126 (200)
+.++|+.|.+.+||.+.++.
T Consensus 57 ~~~~~~~~~l~~Gd~~~i~~ 76 (113)
T 2gu9_A 57 AIVDGHTQALQAGSLIAIER 76 (113)
T ss_dssp EEETTEEEEECTTEEEEECT
T ss_pred EEECCEEEEeCCCCEEEECC
Confidence 56799999999999999973
No 18
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=59.36 E-value=11 Score=26.26 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=17.9
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.+.++.
T Consensus 66 ~~~~~~~~~~l~~Gd~~~ip~ 86 (116)
T 2pfw_A 66 HVNVDGVIKVLTAGDSFFVPP 86 (116)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECc
Confidence 466789999999999999873
No 19
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=57.86 E-value=6.8 Score=26.46 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=17.4
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.+.++.
T Consensus 62 ~~~~~~~~~~l~~Gd~~~ip~ 82 (102)
T 3d82_A 62 QIAFRDQNITLQAGEMYVIPK 82 (102)
T ss_dssp EEECSSCEEEEETTEEEEECT
T ss_pred EEEECCEEEEEcCCCEEEECC
Confidence 356788999999999998873
No 20
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=57.51 E-value=9.4 Score=27.31 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ver 126 (200)
+.+.++|+.|.+.+||.+.++.
T Consensus 59 ~~~~i~~~~~~l~~Gd~i~i~~ 80 (125)
T 3cew_A 59 GFITIDGEKIELQAGDWLRIAP 80 (125)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4578899999999999999973
No 21
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=56.79 E-value=13 Score=25.89 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.+.++.
T Consensus 72 ~~~~~~~~~~l~~Gd~~~ip~ 92 (115)
T 1yhf_A 72 EITIDQETYRVAEGQTIVMPA 92 (115)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356889999999999998873
No 22
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=56.67 E-value=10 Score=27.31 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=17.6
Q ss_pred EEEEEC-CEEEEEcCCCEEEEcc
Q 028995 105 AVVMIG-SRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiG-GKQYkV~~Gd~I~Ver 126 (200)
+.+.++ |..|.+.+||.+.++.
T Consensus 60 ~~~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 60 VEVTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEEETTCCEEEEETTCEEEECT
T ss_pred EEEEECCCCEEEECCCCEEEECC
Confidence 346677 8999999999998873
No 23
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=56.53 E-value=12 Score=28.18 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.++++.
T Consensus 80 ~~~~~~~~~~l~~Gd~i~i~~ 100 (162)
T 3l2h_A 80 TLTMENDQYPIAPGDFVGFPC 100 (162)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 367899999999999999984
No 24
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=55.97 E-value=12 Score=28.24 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=16.8
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.++++.
T Consensus 87 ~l~~~g~~~~l~~GD~i~~p~ 107 (133)
T 2pyt_A 87 HVRHEGETMIAKAGDVMFIPK 107 (133)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEECCCcEEEECC
Confidence 467788888888888888863
No 25
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=55.27 E-value=12 Score=29.55 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.8
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 028995 107 VMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGGKQYkV~~Gd~I~Ver 126 (200)
|.++|+.|.+.+||.++++.
T Consensus 97 l~i~g~~~~l~~GD~i~iP~ 116 (151)
T 4axo_A 97 IIIDGRKVSASSGELIFIPK 116 (151)
T ss_dssp EEETTEEEEEETTCEEEECT
T ss_pred EEECCEEEEEcCCCEEEECC
Confidence 56899999999999999874
No 26
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=54.61 E-value=13 Score=28.86 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=19.2
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ver 126 (200)
+.+.++|+.|.+.+||.++++.
T Consensus 75 ~~v~v~g~~~~l~~Gd~i~ip~ 96 (156)
T 3kgz_A 75 GQCLVGETISDVAQGDLVFIPP 96 (156)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 3467999999999999999984
No 27
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=54.35 E-value=13 Score=28.86 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.|+++.
T Consensus 88 ~~~i~~~~~~l~~Gd~i~ip~ 108 (167)
T 3ibm_A 88 EVVLDDRVEPLTPLDCVYIAP 108 (167)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356999999999999999984
No 28
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=53.79 E-value=6.9 Score=31.44 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.8
Q ss_pred CCeEEEEE--------ECCEEEEEcCCCEEEEcc
Q 028995 101 EEIFAVVM--------IGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 101 ~~mYAIIe--------iGGKQYkV~~Gd~I~Ver 126 (200)
.++|-|++ ++|+.|.|.+||.|.|+.
T Consensus 67 ~E~~yVLe~~G~g~v~idge~~~l~~GD~v~IPp 100 (157)
T 4h7l_A 67 QEIYVVLDHAAHATIELNGQSYPLTKLLAISIPP 100 (157)
T ss_dssp EEEEEEEEECTTCEEEETTEEEECCTTEEEEECT
T ss_pred cEEEEEEecCcEEEEEECCEEEEeCCCCEEEECC
Confidence 45676666 999999999999999983
No 29
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=52.63 E-value=14 Score=29.69 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=18.7
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 028995 107 VMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGGKQYkV~~Gd~I~Ver 126 (200)
+.++|+.|.+.+||.++++.
T Consensus 123 vtl~g~~~~L~~Gds~~iP~ 142 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPA 142 (166)
T ss_dssp EEETTEEEEEETTCEEEECT
T ss_pred EEECCEEEEEcCCCEEEECC
Confidence 78999999999999999984
No 30
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=51.76 E-value=14 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=17.7
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQ 125 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ve 125 (200)
.+.++|+.|.+.+||.+.++
T Consensus 73 ~~~~~~~~~~l~~Gd~~~ip 92 (126)
T 4e2g_A 73 ELTIGEETRVLRPGMAYTIP 92 (126)
T ss_dssp EEEETTEEEEECTTEEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 36788999999999999998
No 31
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=51.45 E-value=12 Score=26.00 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=17.9
Q ss_pred EEEECC-EEEEEcCCCEEEEcc
Q 028995 106 VVMIGS-RQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGG-KQYkV~~Gd~I~Ver 126 (200)
.+.++| +.|.+.+||.+.++.
T Consensus 60 ~~~~~~~~~~~l~~Gd~~~ip~ 81 (107)
T 2i45_A 60 AVDFADGGSMTIREGEMAVVPK 81 (107)
T ss_dssp EEEETTSCEEEECTTEEEEECT
T ss_pred EEEECCCcEEEECCCCEEEECC
Confidence 467888 999999999999873
No 32
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=51.43 E-value=13 Score=27.26 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=17.4
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQ 125 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ve 125 (200)
.+.++|+.|.+.+||.+.++
T Consensus 90 ~~~i~~~~~~l~~Gd~i~i~ 109 (133)
T 1o4t_A 90 VFHDNGKDVPIKAGDVCFTD 109 (133)
T ss_dssp EEEETTEEEEEETTEEEEEC
T ss_pred EEEECCEEEEeCCCcEEEEC
Confidence 35789999999999999887
No 33
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=50.69 E-value=5.8 Score=28.63 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=28.2
Q ss_pred eEEEEE-ECCEEEEEcCCCEEEEcccCCCCCCCeEEeee
Q 028995 103 IFAVVM-IGSRQYIVFPGRFIYTQRLKGANVNDKIILNK 140 (200)
Q Consensus 103 mYAIIe-iGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~ 140 (200)
..|||+ ..|..|.|.....|+.+.| ++|+.|.|++
T Consensus 31 ~~~iVkss~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 66 (85)
T 3h43_A 31 RKVVVKSSTGPSFLVNVSHFVNPDDL---APGKRVCLNQ 66 (85)
T ss_dssp TEEEEEETTSSEEEEEBCTTSCGGGC---CTTCEEEECT
T ss_pred CEEEEEeCCCCeEEEEecCccCHHHC---CCCCEEEECC
Confidence 357887 6678999999988887777 5999988775
No 34
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=50.63 E-value=16 Score=28.17 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=18.3
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.++++.
T Consensus 138 ~~~~~~~~~~l~~GD~i~i~~ 158 (192)
T 1y9q_A 138 KVFFDEQWHELQQGEHIRFFS 158 (192)
T ss_dssp EEEETTEEEEECTTCEEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEcC
Confidence 467899999999999999983
No 35
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=48.93 E-value=11 Score=26.71 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=18.1
Q ss_pred EEEEE-CCEEEEEcCCCEEEEcc
Q 028995 105 AVVMI-GSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIei-GGKQYkV~~Gd~I~Ver 126 (200)
+.+.+ +|+.|.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~i~~ 93 (125)
T 3h8u_A 71 AEYHQGNGIVTHLKAGDIAIAKP 93 (125)
T ss_dssp EEEECSTTCEEEEETTEEEEECT
T ss_pred EEEEECCCeEEEeCCCCEEEECC
Confidence 44567 89999999999999873
No 36
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=48.77 E-value=17 Score=26.20 Aligned_cols=21 Identities=5% Similarity=-0.004 Sum_probs=18.2
Q ss_pred EEEECC-EEEEEcCCCEEEEcc
Q 028995 106 VVMIGS-RQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGG-KQYkV~~Gd~I~Ver 126 (200)
.+.++| +.|.+.+||.+.++.
T Consensus 76 ~~~~~~~~~~~l~~Gd~~~ip~ 97 (134)
T 2o8q_A 76 EFEYEDIGAVMLEAGGSAFQPP 97 (134)
T ss_dssp EEEETTTEEEEEETTCEEECCT
T ss_pred EEEECCcEEEEecCCCEEEECC
Confidence 367888 999999999999974
No 37
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=47.61 E-value=19 Score=28.16 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.4
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 028995 107 VMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGGKQYkV~~Gd~I~Ver 126 (200)
+.++|+.|.+.+||.+.++.
T Consensus 86 ~~v~g~~~~l~~GD~i~ip~ 105 (166)
T 3jzv_A 86 AMVGRAVSAVAPYDLVTIPG 105 (166)
T ss_dssp EEETTEEEEECTTCEEEECT
T ss_pred EEECCEEEEeCCCCEEEECC
Confidence 68999999999999999983
No 38
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=47.56 E-value=17 Score=31.29 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ver 126 (200)
+++.++|+.|.|++||+|+++-
T Consensus 218 g~y~l~~~~~~V~~GD~i~~~~ 239 (266)
T 4e2q_A 218 GIYRLGDNWYPVQAGDVIWMAP 239 (266)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEecCCCEEEECC
Confidence 5788999999999999999974
No 39
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=47.52 E-value=11 Score=26.55 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=18.1
Q ss_pred EEEEECCEEE-EEcCCCEEEEc
Q 028995 105 AVVMIGSRQY-IVFPGRFIYTQ 125 (200)
Q Consensus 105 AIIeiGGKQY-kV~~Gd~I~Ve 125 (200)
+.+.++|+.| .+.+||.+.++
T Consensus 58 ~~~~i~~~~~~~l~~Gd~i~ip 79 (117)
T 2b8m_A 58 MTLTLEDQEPHNYKEGNIVYVP 79 (117)
T ss_dssp EEEEETTSCCEEEETTCEEEEC
T ss_pred EEEEECCEEEEEeCCCCEEEEC
Confidence 3467899999 99999999987
No 40
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=45.92 E-value=16 Score=26.23 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.0
Q ss_pred EEE--ECCEEEEEcCCCEEEEcc
Q 028995 106 VVM--IGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIe--iGGKQYkV~~Gd~I~Ver 126 (200)
.+. ++|+.|.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~ip~ 93 (145)
T 3ht1_A 71 GLVLPDQGRTEEVGPGEAIFIPR 93 (145)
T ss_dssp EEEEGGGTEEEEECTTCEEEECT
T ss_pred EEEEeECCEEEEECCCCEEEECC
Confidence 356 899999999999999983
No 41
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=45.64 E-value=19 Score=29.87 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ver 126 (200)
+.+.++|+.|.|.+||.|.++.
T Consensus 214 ~~~~i~~~~~~l~~GD~i~i~~ 235 (274)
T 1sef_A 214 GMYNLDNEWYPVEKGDYIFMSA 235 (274)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3567999999999999999983
No 42
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=43.70 E-value=24 Score=27.03 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=18.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.|.++.
T Consensus 77 ~~~~~~~~~~l~~GD~i~ip~ 97 (163)
T 3i7d_A 77 VLVDDQGEHPMVPGDCAAFPA 97 (163)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 367999999999999999985
No 43
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=42.49 E-value=16 Score=26.42 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.+.++.
T Consensus 80 ~~~i~~~~~~l~~Gd~i~ip~ 100 (126)
T 1vj2_A 80 TVLKEQGEETVEEGFYIFVEP 100 (126)
T ss_dssp EEECSSCEEEEETTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356788999999999999873
No 44
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=42.43 E-value=13 Score=25.37 Aligned_cols=20 Identities=5% Similarity=-0.104 Sum_probs=15.7
Q ss_pred EEEC-CEEEEEcCCCEEEEcc
Q 028995 107 VMIG-SRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiG-GKQYkV~~Gd~I~Ver 126 (200)
+.++ |+.|.+.+||.+.++.
T Consensus 68 ~~~~~~~~~~l~~Gd~~~ip~ 88 (110)
T 2q30_A 68 FVGDGDAVIPAPRGAVLVAPI 88 (110)
T ss_dssp EECGGGCEEEECTTEEEEEET
T ss_pred EEeCCCEEEEECCCCEEEeCC
Confidence 5666 6888888888888873
No 45
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=41.87 E-value=22 Score=29.21 Aligned_cols=82 Identities=17% Similarity=0.057 Sum_probs=47.8
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecC-cEEEEEEEeecCCCeEEEEEec
Q 028995 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTN-AAVHAVVEEQGLNPKVIVFKYK 181 (200)
Q Consensus 103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~-a~V~AtVveh~kg~Ki~VfK~K 181 (200)
..=|+++++..|.|.....+..-.|...++||.|.|++-|.++++ +|.=++.| +-=.|+|++..+...-..|.++
T Consensus 48 CLTV~~~~~~~f~vdv~ETl~~T~Lg~l~~G~~VNLEral~~~~r----lgGH~vsGHVdg~g~i~~i~~~~~~~~~~i~ 123 (186)
T 3ddy_A 48 SNTVVRILGDMVYFDIDQALGTTTFDGLKEGDQVNLEIHPKFGEV----VGRGGLTGNIKGTALVAAIEENDAGFSVLID 123 (186)
T ss_dssp EEEEEEEETTEEEEEECTTTTTSSGGGCCTTCEEEEECCC-------------CBCSCCCEEEEEEEEECCSSEEEEEEE
T ss_pred EEEEEEEcCCEEEEEhHHhhhhCchhhcCCCCEEEECCCCCCCCc----cCCeeEEEEEeEEEEEEEEEECCCeEEEEEE
Confidence 556677777777765422222223445679999999999999875 45555555 5567788877776666667766
Q ss_pred CCCCccc
Q 028995 182 KKKNYRR 188 (200)
Q Consensus 182 rRK~yrR 188 (200)
--+...|
T Consensus 124 ~p~~l~~ 130 (186)
T 3ddy_A 124 IPKGLAE 130 (186)
T ss_dssp CCTTTCS
T ss_pred cCHHHhh
Confidence 5555444
No 46
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=41.28 E-value=88 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.2
Q ss_pred EEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEE
Q 028995 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLV 144 (200)
Q Consensus 104 YAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlv 144 (200)
.|=|.+||+.++|...=.|.+..| .+|+.|.||+-|.+
T Consensus 21 tadV~t~GRkMrv~vsP~vd~~~L---~~Gq~V~LNEal~V 58 (153)
T 2wfw_A 21 TVDVFTSGRKMRLTCSPNIDTDTL---ALGQTVRLNEALTI 58 (153)
T ss_dssp CEEEEETTEEEEECBCTTCCGGGC---CTTCEEEECTTCCE
T ss_pred eEEEEECCcEEEEEeCCCCCHHHC---CCCCEEEECCceEE
Confidence 578889999999999888888877 49999988755443
No 47
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=40.97 E-value=22 Score=26.62 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=13.5
Q ss_pred EEE-CCEEEEEcCCCEEEEcc
Q 028995 107 VMI-GSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 Iei-GGKQYkV~~Gd~I~Ver 126 (200)
|.+ +|..+.+.+||.+.++.
T Consensus 81 l~~~~g~~~~l~~GD~~~ip~ 101 (123)
T 3bcw_A 81 LVDPDGTVHAVKAGDAFIMPE 101 (123)
T ss_dssp EECTTCCEEEEETTCEEEECT
T ss_pred EEECCCeEEEECCCCEEEECC
Confidence 455 66777777777777663
No 48
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=40.78 E-value=22 Score=28.70 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=18.6
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ver 126 (200)
+.+.++|+.|.+.+||.+.++.
T Consensus 184 ~~~~i~g~~~~l~~Gd~i~ip~ 205 (227)
T 3rns_A 184 GKYYVDGKPFIVKKGESAVLPA 205 (227)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3467899999999999999884
No 49
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=40.62 E-value=19 Score=27.15 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=22.5
Q ss_pred CCCCCeEEEEEECCEEEEEcCCCEEE
Q 028995 98 PKREEIFAVVMIGSRQYIVFPGRFIY 123 (200)
Q Consensus 98 ~~~~~mYAIIeiGGKQYkV~~Gd~I~ 123 (200)
.+...-+|||+.+|+|.....||.|.
T Consensus 35 ~~~~~S~AII~~~g~Q~~Y~vGd~I~ 60 (104)
T 2lnv_A 35 DDDSRSIAIISKDNEQFSRGVNEEVP 60 (104)
T ss_dssp SSSSSCEEEEESSSCCEEECTTEECS
T ss_pred CCccccEEEEEcCCeEeEEeCCCCcC
Confidence 34567899999999999999999874
No 50
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=40.37 E-value=18 Score=29.63 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.2
Q ss_pred EEEEECCEEEEEcCCCEEEEc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQ 125 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ve 125 (200)
+.+.++|+.|.|.+||.|+++
T Consensus 211 ~~~~i~~~~~~l~~GD~i~~~ 231 (261)
T 1rc6_A 211 GVYNLDNNWIPVKKGDYIFMG 231 (261)
T ss_dssp EEEESSSCEEEEETTCEEEEC
T ss_pred EEEEECCEEEEeCCCCEEEEC
Confidence 346788889999999999887
No 51
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=39.42 E-value=28 Score=23.84 Aligned_cols=21 Identities=5% Similarity=-0.154 Sum_probs=17.5
Q ss_pred EEEEECC--EEEEEcCCCEEEEc
Q 028995 105 AVVMIGS--RQYIVFPGRFIYTQ 125 (200)
Q Consensus 105 AIIeiGG--KQYkV~~Gd~I~Ve 125 (200)
+.+.++| +.|.+.+||.++++
T Consensus 50 ~~~~~~~g~~~~~l~~Gd~~~~p 72 (97)
T 2fqp_A 50 LLLETPEGSVTSQLTRGVSYTRP 72 (97)
T ss_dssp EEEEETTEEEEEEECTTCCEEEC
T ss_pred EEEEeCCCCEEEEEcCCCEEEeC
Confidence 3567877 79999999999887
No 52
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=38.86 E-value=32 Score=26.41 Aligned_cols=20 Identities=10% Similarity=0.360 Sum_probs=16.8
Q ss_pred EEECC----EEEEEcCCCEEEEcc
Q 028995 107 VMIGS----RQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGG----KQYkV~~Gd~I~Ver 126 (200)
+.++| +.|.+.+||.++++.
T Consensus 153 ~~~~~~~~~~~~~l~~GD~~~~~~ 176 (198)
T 2bnm_A 153 MKWGDKENPKEALLPTGASMFVEE 176 (198)
T ss_dssp EEESCTTSCEEEEECTTCEEEECT
T ss_pred EEECCcCCcccEEECCCCEEEeCC
Confidence 56788 999999999998873
No 53
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.70 E-value=26 Score=30.38 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.6
Q ss_pred CeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeee
Q 028995 102 EIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNK 140 (200)
Q Consensus 102 ~mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~ 140 (200)
+.+|||+.+|..|.|..-..|..+.| ++|+.|.|+.
T Consensus 110 d~~aiV~s~Gr~~~V~Vsp~Vd~e~L---kPG~rVaLNe 145 (251)
T 3m9b_A 110 DDTVDVFTSGRKMRLTCSPNIDAASL---KKGQTVRLNE 145 (251)
T ss_dssp SSCEEEECSSSCCEECBCTTSCTTTS---CSSCEEEECT
T ss_pred CCEEEEEeCCceEEEEeCCCCCHHHC---CCCCEEEeCC
Confidence 56789999999999998887776666 5899876653
No 54
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=38.56 E-value=30 Score=28.06 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.8
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 028995 105 AVVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 105 AIIeiGGKQYkV~~Gd~I~Ver 126 (200)
+.+.++|+.|.+.+||.+.++.
T Consensus 177 ~~~~i~~~~~~l~~Gd~i~ip~ 198 (243)
T 3h7j_A 177 YDMTVEGCTVEMKFGTAYFCEP 198 (243)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3478999999999999999874
No 55
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=38.39 E-value=30 Score=28.36 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=25.9
Q ss_pred EEEECCEEEEEcCCCEEEEcccCC---CCCCCeEEeeeEEEEec
Q 028995 106 VVMIGSRQYIVFPGRFIYTQRLKG---ANVNDKIILNKVLLVGT 146 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~VerL~~---~e~Gd~I~l~~VLlvg~ 146 (200)
++.++|+-|.|++||.++++--.. .+.|+.- + +.|++.|
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~~~-~-~yl~~kd 239 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNW-S-KYLLYKD 239 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESSSC-E-EEEEEEE
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCCCC-E-EEEEEEe
Confidence 567999999999999999873210 1345542 2 5666654
No 56
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=36.23 E-value=32 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=17.9
Q ss_pred EEEECC---------EEEEEcCCCEEEEcc
Q 028995 106 VVMIGS---------RQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGG---------KQYkV~~Gd~I~Ver 126 (200)
.+.++| +.|.+.+||.+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~ 102 (163)
T 1lr5_A 73 TLLMGSSSLKYPGQPQEIPFFQNTTFSIPV 102 (163)
T ss_dssp EEEECCSSSSSCCSCEEEEECTTEEEEECT
T ss_pred EEEECCccccccCccEEEEeCCCCEEEECC
Confidence 356788 999999999999983
No 57
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=34.39 E-value=27 Score=24.33 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=27.9
Q ss_pred CeEEEEEECCEEEEEcCCCEEEEc--ccCCCCCCCeEEeeeEEEEec
Q 028995 102 EIFAVVMIGSRQYIVFPGRFIYTQ--RLKGANVNDKIILNKVLLVGT 146 (200)
Q Consensus 102 ~mYAIIeiGGKQYkV~~Gd~I~Ve--rL~~~e~Gd~I~l~~VLlvg~ 146 (200)
.-.|||+.+|+|-.-..||.|.-- .|. .|..|+|++=.+
T Consensus 19 ~s~AII~~~g~q~~Y~vGd~i~g~~a~l~------~V~~DrVIl~~~ 59 (68)
T 3oss_C 19 RPGAVIEEGGKQQVYLQGERLDSHNAVIE------EINRDHVMLRYQ 59 (68)
T ss_dssp SCEEEEEETTEEEEECTTCBCSSSSEEEE------EECSSEEEEEET
T ss_pred CcEEEEecCCcEeEEECCCEeCCCCEEEE------EEeCCEEEEecC
Confidence 778999999999999999987321 232 455667766443
No 58
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=33.72 E-value=29 Score=25.98 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=17.7
Q ss_pred EEEECCEE-EEEcCCCEEEEcc
Q 028995 106 VVMIGSRQ-YIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQ-YkV~~Gd~I~Ver 126 (200)
.+.++|+. |.+.+||.+.++.
T Consensus 80 ~~~~~~~~~~~l~~Gd~i~ip~ 101 (147)
T 2f4p_A 80 FYQERGKPARILKKGDVVEIPP 101 (147)
T ss_dssp EEEETTSCCEEEETTCEEEECT
T ss_pred EEEECCEEEEEECCCCEEEECC
Confidence 45688887 9999999999873
No 59
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=32.87 E-value=1.6e+02 Score=23.83 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCEEEEcccCCCCCCCeEEee-eEEEEec-CCceEeccceecCcEEEEEEE
Q 028995 110 GSRQYIVFPGRFIYTQRLKGANVNDKIILN-KVLLVGT-KTTTYIGKPVVTNAAVHAVVE 167 (200)
Q Consensus 110 GGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~-~VLlvg~-~~~t~vG~P~v~~a~V~AtVv 167 (200)
.|.|.... ||+|.+- ++++|.+|.=+ .|..+|. ++...-|..--.+|.|-|.-+
T Consensus 110 SGQ~I~~~-gdlvVlG---dVn~GAeViA~GnI~V~G~LrG~a~AGa~Gn~~A~I~a~~l 165 (210)
T 1hf2_A 110 SGQTVVHS-GDVIVFG---NVNKGAEILAGGSVVVFGKAQGNIRAGLNEGGQAVVAALDL 165 (210)
T ss_dssp TTEEEEES-SCEEESS---CBCTTCEEEESSCEEEEEEECSEEEECTTTCTTCEEEEEEE
T ss_pred CCCEEEec-CCEEEEc---cCCCCCEEEeCCcEEEEEeeceEEEeCCCCCCCcEEEeccC
Confidence 34555555 9999775 56788888765 6666664 455555655445565555443
No 60
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=32.36 E-value=30 Score=27.88 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.9
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQ 125 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ve 125 (200)
-+.++|+.+.+.+||.|+++
T Consensus 69 ~~~i~~~~~~l~~Gd~~~~p 88 (227)
T 3rns_A 69 EIFIENNKKTISNGDFLEIT 88 (227)
T ss_dssp EEEESSCEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 34589999999999999998
No 61
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=31.92 E-value=44 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.4
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 028995 107 VMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGGKQYkV~~Gd~I~Ver 126 (200)
+.++|+.|.+.+||.++++.
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~ 271 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPA 271 (337)
T ss_dssp EEETTEEEEECTTCEEEECT
T ss_pred EEECCEEEEECCCCEEEECC
Confidence 46889999999999999884
No 62
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=30.86 E-value=38 Score=27.68 Aligned_cols=20 Identities=10% Similarity=0.394 Sum_probs=18.3
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQ 125 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ve 125 (200)
.+.++|+.|.+.+||.++++
T Consensus 93 ~~~~~~~~~~L~~Gd~~~~~ 112 (261)
T 1rc6_A 93 TAKAEGKTFALSEGGYLYCP 112 (261)
T ss_dssp EEEETTEEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 46799999999999999998
No 63
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=30.59 E-value=28 Score=25.82 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.8
Q ss_pred EEEECCEE------EEEcCCCEEEEc
Q 028995 106 VVMIGSRQ------YIVFPGRFIYTQ 125 (200)
Q Consensus 106 IIeiGGKQ------YkV~~Gd~I~Ve 125 (200)
.+.++|+. |.+.+||.|.++
T Consensus 76 ~~~i~~~~~~~~~~~~l~~Gd~i~ip 101 (148)
T 2oa2_A 76 LVQMGHRQDNLHFQEEVFDDYAILIP 101 (148)
T ss_dssp EEEEESBTTBCCEEEEEETTCEEEEC
T ss_pred EEEECCccccceeeEEECCCCEEEEC
Confidence 35678887 999999999987
No 64
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=29.95 E-value=62 Score=26.89 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=34.2
Q ss_pred CeEEEEEECCEEEEEcCCCEEEEc--ccCCCCCCCeEEeeeEEEEecCCceEec
Q 028995 102 EIFAVVMIGSRQYIVFPGRFIYTQ--RLKGANVNDKIILNKVLLVGTKTTTYIG 153 (200)
Q Consensus 102 ~mYAIIeiGGKQYkV~~Gd~I~Ve--rL~~~e~Gd~I~l~~VLlvg~~~~t~vG 153 (200)
.-|+||+++|--|.| ++. .+...++|+.+.|.--+.+..+...+.|
T Consensus 30 ~~~~Vi~v~gVGy~v------~v~~~t~~~l~~Ge~v~l~t~~~vRED~~~LyG 77 (212)
T 2ztd_A 30 LDHVVIEAAGVGYRV------NATPATLATLRQGTEARLITAMIVREDSMTLYG 77 (212)
T ss_dssp SSEEEEEETTEEEEE------ECCHHHHTTCCTTSEEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCeeEEE------EEChHhHHhcCCCCEEEEEEEEEEecCCcceEe
Confidence 468999999976654 443 2334568999999888888877777777
No 65
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=28.51 E-value=54 Score=27.10 Aligned_cols=21 Identities=10% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.++++.
T Consensus 79 ~~~~~~~~~~l~~Gd~~~~p~ 99 (337)
T 1y3t_A 79 ELTLDGERYLLISGDYANIPA 99 (337)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356899999999999999983
No 66
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=28.16 E-value=38 Score=28.47 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=18.6
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.++++.
T Consensus 102 ~v~v~g~~~~L~~GD~i~ip~ 122 (278)
T 1sq4_A 102 SLTLQGQVHAMQPGGYAFIPP 122 (278)
T ss_dssp EEEESSCEEEECTTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 367999999999999999983
No 67
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=27.13 E-value=56 Score=27.39 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=25.5
Q ss_pred EEEECCEEEEEcCCCEEEEcccCC---CCCCCeEEeeeEEEEe
Q 028995 106 VVMIGSRQYIVFPGRFIYTQRLKG---ANVNDKIILNKVLLVG 145 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~VerL~~---~e~Gd~I~l~~VLlvg 145 (200)
++.++|+-|.|++||++.+.--.. .+.|+. .|.=+|.++
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~~-~~~yl~~~d 265 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPG-RFRYLLYKD 265 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEESCCEEEECCSSS-CEEEEEEEE
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEEcCCCC-CEEEEEEEE
Confidence 556999999999999999874211 245664 233344443
No 68
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=26.85 E-value=37 Score=27.76 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ver 126 (200)
.+.++|+.|.+.+||.++++.
T Consensus 80 ~~~~~~~~~~l~~Gd~~~~p~ 100 (246)
T 1sfn_A 80 DVAVGGETRTLREYDYVYLPA 100 (246)
T ss_dssp EEECSSCEEEECTTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 477999999999999999983
No 69
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=26.75 E-value=24 Score=28.39 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.3
Q ss_pred ECCEEEE--EcCCCEEEEcc
Q 028995 109 IGSRQYI--VFPGRFIYTQR 126 (200)
Q Consensus 109 iGGKQYk--V~~Gd~I~Ver 126 (200)
.+|+.|. |++||+|.|+.
T Consensus 117 ~~d~~~~~~l~~GDli~IP~ 136 (179)
T 1zrr_A 117 IGDEVFQVLCEKNDLISVPA 136 (179)
T ss_dssp CSSCEEEEECCCSCEEEECT
T ss_pred eCCEEEEEEECCCCEEEECC
Confidence 4777755 89999999983
No 70
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=25.22 E-value=40 Score=27.89 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.2
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 028995 106 VVMIGSRQYIVFPGRFIYTQ 125 (200)
Q Consensus 106 IIeiGGKQYkV~~Gd~I~Ve 125 (200)
.+.++|+.|.+.+||.++++
T Consensus 96 ~~~~~~~~~~L~~GD~~~~~ 115 (274)
T 1sef_A 96 RVSDGQETHELEAGGYAYFT 115 (274)
T ss_dssp EEECSSCEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 36789999999999999998
No 71
>3bs1_A Accessory gene regulator protein A; lyttr, AGRA, response regulator, DNA binding domain; HET: DNA BRU; 1.60A {Staphylococcus aureus}
Probab=25.12 E-value=89 Score=21.54 Aligned_cols=26 Identities=12% Similarity=-0.007 Sum_probs=22.8
Q ss_pred CeEEEEEECCEEEEEcCCCEEEEccc
Q 028995 102 EIFAVVMIGSRQYIVFPGRFIYTQRL 127 (200)
Q Consensus 102 ~mYAIIeiGGKQYkV~~Gd~I~VerL 127 (200)
.-+..|+.+|+.++|...|+++++..
T Consensus 5 ~~~i~i~~~~~~~~i~~~dI~yie~~ 30 (103)
T 3bs1_A 5 VETIELKRGSNSVYVQYDDIMFFESS 30 (103)
T ss_dssp SCEEEEEETTEEEEEEGGGEEEEEEC
T ss_pred CCEEEEEECCEEEEEehHHEEEEEec
Confidence 44678899999999999999999865
No 72
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=23.03 E-value=47 Score=25.85 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.5
Q ss_pred CEEEEEcCCCEEEEcc
Q 028995 111 SRQYIVFPGRFIYTQR 126 (200)
Q Consensus 111 GKQYkV~~Gd~I~Ver 126 (200)
++.|.+.+||+++++.
T Consensus 82 ~~~~~l~~GDv~~~P~ 97 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQA 97 (178)
T ss_dssp EEEEEEETTEEEEECT
T ss_pred cEEEEECCCCEEEECC
Confidence 7889999999999984
No 73
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=23.00 E-value=55 Score=28.34 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.7
Q ss_pred EEEECC-EEEEEcCCCEEEEcc
Q 028995 106 VVMIGS-RQYIVFPGRFIYTQR 126 (200)
Q Consensus 106 IIeiGG-KQYkV~~Gd~I~Ver 126 (200)
.|.++| +.|.+.+||.|.|+.
T Consensus 284 ~i~i~g~~~~~l~~Gd~~~iPa 305 (350)
T 1juh_A 284 VVQIGDYAATELGSGDVAFIPG 305 (350)
T ss_dssp EEEETTSCCEEECTTCEEEECT
T ss_pred EEEECCeEEEEeCCCCEEEECC
Confidence 468899 899999999999984
No 74
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=21.23 E-value=82 Score=28.42 Aligned_cols=20 Identities=5% Similarity=0.172 Sum_probs=17.1
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 028995 107 VMIGSRQYIVFPGRFIYTQR 126 (200)
Q Consensus 107 IeiGGKQYkV~~Gd~I~Ver 126 (200)
+.++|+.|.+++||++.++.
T Consensus 327 ~~V~ge~~~~~~GD~~~iP~ 346 (394)
T 3bu7_A 327 SIVGGKRFDWSEHDIFCVPA 346 (394)
T ss_dssp EEETTEEEEECTTCEEEECT
T ss_pred EEECCEEEEEeCCCEEEECC
Confidence 35788999999999999984
No 75
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=21.06 E-value=59 Score=23.36 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=12.2
Q ss_pred EEcCCCEEEEcccCCCCCCCeE
Q 028995 115 IVFPGRFIYTQRLKGANVNDKI 136 (200)
Q Consensus 115 kV~~Gd~I~VerL~~~e~Gd~I 136 (200)
.+..||+|.|++......||.+
T Consensus 32 ~i~~Gd~v~Vd~~~~~~~Gdiv 53 (109)
T 1kca_A 32 SFPDGMLILVDPEQAVEPGDFC 53 (109)
T ss_dssp CCCTTCEEEEETTSCCCTTCEE
T ss_pred eeCCCCEEEEecCCcCCCCCEE
Confidence 4666666666654334445443
No 76
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=20.80 E-value=47 Score=26.13 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=14.9
Q ss_pred EEECCEE-----EEEcCCCEEEEc
Q 028995 107 VMIGSRQ-----YIVFPGRFIYTQ 125 (200)
Q Consensus 107 IeiGGKQ-----YkV~~Gd~I~Ve 125 (200)
+.++|.. |.+.+||.|.++
T Consensus 109 ~~i~~~~g~~~~~~l~~GD~v~ip 132 (190)
T 1x82_A 109 MLLQTPEGDAKWISMEPGTVVYVP 132 (190)
T ss_dssp EEEECTTCCEEEEEECTTCEEEEC
T ss_pred EEEcCcCCcEEEEEECCCcEEEEC
Confidence 4456666 899999999887
No 77
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.21 E-value=2.6e+02 Score=21.57 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=21.9
Q ss_pred CeEEEEEECCEEE---EEcCCCEEEEcccCCCCCCCeEE
Q 028995 102 EIFAVVMIGSRQY---IVFPGRFIYTQRLKGANVNDKII 137 (200)
Q Consensus 102 ~mYAIIeiGGKQY---kV~~Gd~I~VerL~~~e~Gd~I~ 137 (200)
+.||+ ++.|--- .+..||++.|++-.....|+.+.
T Consensus 108 ~~f~l-~v~GdSM~~p~i~~GD~viv~~~~~~~~G~ivv 145 (196)
T 3k2z_A 108 DHFLL-KVKGESMIEEHICDGDLVLVRRQDWAQNGDIVA 145 (196)
T ss_dssp CEEEE-ECCSSTTGGGTCCTTCEEEEEECSCCCTTCEEE
T ss_pred CEEEE-EEeCCCcCCCCCCCCCEEEEeccCcCCCCCEEE
Confidence 45554 4444333 57888888888755566677553
Done!