Query 028996
Match_columns 200
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3142 Prenylated rab accepto 99.9 5.6E-25 1.2E-29 185.8 6.3 85 79-165 27-111 (187)
2 PF03208 PRA1: PRA1 family pro 99.8 1.3E-19 2.8E-24 142.7 10.3 81 86-168 5-88 (153)
3 COG5130 YIP3 Prenylated rab ac 98.3 1.8E-06 3.9E-11 72.5 6.8 68 95-163 34-101 (169)
4 KOG4050 Glutamate transporter 93.0 0.58 1.3E-05 40.5 7.9 79 88-167 18-109 (188)
5 COG4420 Predicted membrane pro 62.5 15 0.00032 32.3 4.7 50 114-179 45-95 (191)
6 PF04140 ICMT: Isoprenylcystei 46.7 64 0.0014 24.2 5.4 36 126-163 48-86 (94)
7 PRK05305 phosphatidylserine de 45.0 31 0.00067 29.3 3.8 37 126-165 8-45 (206)
8 COG5144 TFB2 RNA polymerase II 44.1 7.3 0.00016 37.4 -0.1 27 1-31 48-74 (447)
9 PF05879 RHD3: Root hair defec 41.2 79 0.0017 32.1 6.6 41 127-168 652-696 (742)
10 PF14257 DUF4349: Domain of un 40.3 70 0.0015 27.5 5.3 24 10-33 98-121 (262)
11 PF11241 DUF3043: Protein of u 37.9 73 0.0016 27.3 5.0 21 117-137 74-94 (170)
12 COG3877 Uncharacterized protei 37.7 14 0.0003 30.3 0.6 31 72-124 34-64 (122)
13 PF01124 MAPEG: MAPEG family; 36.9 1.2E+02 0.0026 22.2 5.5 49 105-153 40-88 (129)
14 PRK13707 conjugal transfer pil 36.5 1.1E+02 0.0023 23.9 5.3 58 101-168 7-68 (101)
15 PF07178 TraL: TraL protein; 36.2 1.2E+02 0.0026 22.8 5.5 25 143-167 37-61 (95)
16 PF15013 CCSMST1: CCSMST1 fami 32.8 27 0.00058 26.5 1.4 30 140-171 30-59 (77)
17 PF05620 DUF788: Protein of un 32.4 2.7E+02 0.0059 22.9 7.4 52 111-162 5-64 (170)
18 COG2059 ChrA Chromate transpor 32.0 1.6E+02 0.0035 25.5 6.2 51 109-159 126-178 (195)
19 KOG2203 GTP-binding protein [G 29.1 1.6E+02 0.0034 30.6 6.4 73 109-186 654-734 (772)
20 PF04191 PEMT: Phospholipid me 28.7 1.2E+02 0.0026 21.9 4.3 50 117-166 44-96 (106)
21 TIGR00779 cad cadmium resistan 28.2 59 0.0013 28.3 3.0 42 136-182 122-163 (193)
22 cd05133 RasGAP_IQGAP1 IQGAP1 i 27.6 5.2E+02 0.011 24.4 9.2 75 110-185 113-220 (360)
23 PF06388 DUF1075: Protein of u 26.7 1.1E+02 0.0024 25.8 4.2 56 81-139 54-109 (146)
24 PF13231 PMT_2: Dolichyl-phosp 26.0 1.7E+02 0.0036 21.7 4.7 33 127-160 100-132 (159)
25 PF12273 RCR: Chitin synthesis 25.8 52 0.0011 25.8 2.0 17 147-163 6-22 (130)
26 PF08260 Kinin: Insect kinin p 25.7 16 0.00035 17.4 -0.5 7 16-22 1-7 (8)
27 COG5594 Uncharacterized integr 25.4 1E+02 0.0022 32.5 4.4 46 127-178 413-464 (827)
28 PF04530 Viral_Beta_CD: Viral 25.0 1E+02 0.0022 25.5 3.6 18 120-137 44-61 (122)
29 PF12794 MscS_TM: Mechanosensi 24.8 3.7E+02 0.008 24.5 7.6 96 74-171 77-187 (340)
30 PF10864 DUF2663: Protein of u 24.3 3.5E+02 0.0076 22.4 6.6 29 137-165 52-80 (130)
31 PF12911 OppC_N: N-terminal TM 24.2 89 0.0019 20.6 2.7 24 115-138 4-27 (56)
32 COG0368 CobS Cobalamin-5-phosp 23.4 1.9E+02 0.0042 25.7 5.3 116 49-168 101-218 (246)
33 PRK11176 lipid transporter ATP 23.1 3.9E+02 0.0084 25.2 7.5 61 106-166 118-189 (582)
34 COG4965 TadB Flp pilus assembl 23.1 3.9E+02 0.0084 25.0 7.4 83 103-185 58-152 (309)
35 PF06210 DUF1003: Protein of u 22.7 1.1E+02 0.0024 24.1 3.3 35 143-177 4-39 (108)
36 PRK09459 pspG phage shock prot 22.5 1.6E+02 0.0035 22.6 4.0 35 128-162 3-37 (76)
37 PF03374 ANT: Phage antirepres 22.3 47 0.001 24.7 1.1 20 12-31 34-53 (111)
38 COG2020 STE14 Putative protein 22.2 2.1E+02 0.0046 23.8 5.1 34 123-156 115-151 (187)
39 PF11457 DUF3021: Protein of u 22.2 3.5E+02 0.0076 20.7 6.0 26 116-145 72-99 (136)
40 cd05132 RasGAP_GAPA GAPA is an 22.2 6E+02 0.013 23.1 9.4 73 111-184 113-214 (331)
41 PF11911 DUF3429: Protein of u 21.3 4.3E+02 0.0094 21.1 7.0 47 136-182 83-132 (142)
42 PF13779 DUF4175: Domain of un 21.1 1.9E+02 0.0042 30.1 5.5 27 141-167 33-59 (820)
43 PF03839 Sec62: Translocation 21.1 2.2E+02 0.0048 25.3 5.2 12 129-140 117-128 (224)
44 COG5478 Predicted small integr 20.8 1.7E+02 0.0036 24.8 4.1 42 139-180 16-60 (141)
45 PF10028 DUF2270: Predicted in 20.1 2.3E+02 0.0049 24.9 4.9 65 71-141 77-141 (185)
No 1
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.6e-25 Score=185.83 Aligned_cols=85 Identities=27% Similarity=0.481 Sum_probs=80.9
Q ss_pred cccccccCCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 028996 79 KLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDF 158 (200)
Q Consensus 79 ~lTt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~f 158 (200)
+.+..+=..+.|||+ ||+|. +++|+|+|++||.+|||.|+.||+.||+++++++.+.+|+|||++||++++.+++|.|
T Consensus 27 ~~~~~~~lst~RpW~-ef~d~-~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~ 104 (187)
T KOG3142|consen 27 KQTIQSGLSTRRPWS-EFFDR-SAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLF 104 (187)
T ss_pred HHHHHHHHhccCCHH-HHHcc-cccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 566777778999999 99996 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 028996 159 FKFCSDK 165 (200)
Q Consensus 159 LyFlRDe 165 (200)
|||+|||
T Consensus 105 LY~~rd~ 111 (187)
T KOG3142|consen 105 LYFLRDE 111 (187)
T ss_pred eeeecCC
Confidence 9999964
No 2
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=99.81 E-value=1.3e-19 Score=142.66 Aligned_cols=81 Identities=28% Similarity=0.488 Sum_probs=76.2
Q ss_pred CCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc-
Q 028996 86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD- 164 (200)
Q Consensus 86 ~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~fLyFlRD- 164 (200)
..+.|||+ ||+|. ++|+.|++.+|+..|+++|+.||+.||.++++++++++++++|+.+++++.+.++|.+++..++
T Consensus 5 ~~~~Rpw~-eF~~~-~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03208_consen 5 LSPLRPWR-EFFDT-SRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRKE 82 (153)
T ss_pred cCCCCCHH-HHhCc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46899998 99986 9999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --ccCc
Q 028996 165 --KWNW 168 (200)
Q Consensus 165 --ew~~ 168 (200)
.+.+
T Consensus 83 ~~~~~~ 88 (153)
T PF03208_consen 83 NDPIVI 88 (153)
T ss_pred Ccchhc
Confidence 4444
No 3
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=98.30 E-value=1.8e-06 Score=72.54 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=59.2
Q ss_pred hhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 028996 95 EFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCS 163 (200)
Q Consensus 95 eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~fLyFlR 163 (200)
||++. +-.|.|.++.||.+||-.|++||..||-.++.++..-.|++.|.-||+.....+.=.-.+-+|
T Consensus 34 eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl~ 101 (169)
T COG5130 34 EFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKLR 101 (169)
T ss_pred HHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhcc
Confidence 99997 999999999999999999999999999999999999999999998888766666544444444
No 4
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=93.00 E-value=0.58 Score=40.55 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=54.6
Q ss_pred CCCCchhhhhccccccCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHH--HHHHH-
Q 028996 88 KTPSWTREFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPL----ALVGLISSL--ALWDF- 158 (200)
Q Consensus 88 ~~rPWr~eFl~~~~SyS~P~--S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPi----ALI~~la~~--a~W~f- 158 (200)
|-|-|- +|+-.+.-|..|. -++.=-.||-.|+-||+.||...++..+.+.-+-.|. ++|+....+ .+|.+
T Consensus 18 PlRa~d-dF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~ 96 (188)
T KOG4050|consen 18 PLRALD-DFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAAS 96 (188)
T ss_pred cchhHH-HhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677 7764456677775 4677778999999999999999999999888887775 344333333 45644
Q ss_pred ----HHHhhcccC
Q 028996 159 ----FKFCSDKWN 167 (200)
Q Consensus 159 ----LyFlRDew~ 167 (200)
.+.||.+.+
T Consensus 97 ~~a~~krmr~~hp 109 (188)
T KOG4050|consen 97 ADANIKRMRTDHP 109 (188)
T ss_pred ccHHHHHHhhcCc
Confidence 455553333
No 5
>COG4420 Predicted membrane protein [Function unknown]
Probab=62.51 E-value=15 Score=32.26 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc-cCccchhHHHHHHH
Q 028996 114 LRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDK-WNWDRYPVIRQVLV 179 (200)
Q Consensus 114 ~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~fLyFlRDe-w~~~~~p~~~q~l~ 179 (200)
.|+-+|+.+|.+-.++|+..++ .+++|.++.-.--- +.||-||++-=-|+
T Consensus 45 dR~ad~ia~f~Gsw~fil~~~~----------------~ll~Wi~lNl~~~~~~~wDpyPFi~LnLl 95 (191)
T COG4420 45 DRVADKIARFGGSWAFILTFTL----------------LLLLWIVLNLFLVPGLAWDPYPFILLNLL 95 (191)
T ss_pred hhHHHHHHHHcCChHHHHHHHH----------------HHHHHHHHHHhhhcCCcCCCccHHHHHHH
Confidence 4899999999998887655443 34566666544332 78899999864443
No 6
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=46.74 E-value=64 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=21.1
Q ss_pred HHHH-HHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhh
Q 028996 126 NYAS-LFILFFACSLYQMP--LALVGLISSLALWDFFKFCS 163 (200)
Q Consensus 126 NYai-vvl~vfflsLy~hP--iALI~~la~~a~W~fLyFlR 163 (200)
||+. ++..+.+..|+.+| ++++.++ +.+|.++...+
T Consensus 48 ~Y~g~~~~~~~~~~ll~~~~~~~~~~~~--~~~~~l~~RI~ 86 (94)
T PF04140_consen 48 SYLGNIIWELGGQLLLFNAWLTALILFA--LVAWLLFVRIR 86 (94)
T ss_dssp HHHH-HHHHHHHHHHHHT-HHHHHHHHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHH
Confidence 7887 55666677888888 5555444 34444444444
No 7
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=44.99 E-value=31 Score=29.29 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 028996 126 NYASLFILFFACS-LYQMPLALVGLISSLALWDFFKFCSDK 165 (200)
Q Consensus 126 NYaivvl~vffls-Ly~hPiALI~~la~~a~W~fLyFlRDe 165 (200)
.|.++.++++++. +.+.+++.+.++. .+ .++||+||.
T Consensus 8 ~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~ffRdp 45 (206)
T PRK05305 8 PFIAAAALVLLILGLLWWPLAWIGLLL--TL-FCLYFFRDP 45 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHheecCC
Confidence 4555544444442 3344555543332 22 347899994
No 8
>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Probab=44.09 E-value=7.3 Score=37.38 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCCcccCCCcccccCchHHHHhhhhcCchhh
Q 028996 1 MGKVFASNPLSLNVPDPAFESWLRDSGYLEI 31 (200)
Q Consensus 1 mgm~F~~NPLSLsvp~~afe~Wlrdsg~le~ 31 (200)
|.|.|++||.||+ +++.|.+.++-+-.
T Consensus 48 m~mlfn~~~v~ll----d~d~wik~~~Ki~~ 74 (447)
T COG5144 48 MDMLFNSHSVSLL----DEDEWIKETLKILL 74 (447)
T ss_pred HHHHcCCCCcchh----hHHHHHhhhhHHHH
Confidence 7899999987775 89999999986643
No 9
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=41.17 E-value=79 Score=32.15 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCc
Q 028996 127 YASLFILFF----ACSLYQMPLALVGLISSLALWDFFKFCSDKWNW 168 (200)
Q Consensus 127 Yaivvl~vf----flsLy~hPiALI~~la~~a~W~fLyFlRDew~~ 168 (200)
|++++++|+ |+.++++|+=++.+++++++-.++| --|-||.
T Consensus 652 w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~-~l~l~~p 696 (742)
T PF05879_consen 652 WMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY-QLNLWGP 696 (742)
T ss_pred HHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH-HhcchhH
Confidence 777777777 6899999999999999998887777 5566763
No 10
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.30 E-value=70 Score=27.51 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=16.7
Q ss_pred cccccCchHHHHhhhhcCchhhhh
Q 028996 10 LSLNVPDPAFESWLRDSGYLEILD 33 (200)
Q Consensus 10 LSLsvp~~afe~Wlrdsg~le~ld 33 (200)
|.+-||...|+..+.+=+-+..++
T Consensus 98 ltiRVP~~~~~~~l~~l~~~g~v~ 121 (262)
T PF14257_consen 98 LTIRVPADKFDSFLDELSELGKVT 121 (262)
T ss_pred EEEEECHHHHHHHHHHHhccCcee
Confidence 667899999998887655443333
No 11
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=37.87 E-value=73 Score=27.32 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028996 117 HENVKRYARNYASLFILFFAC 137 (200)
Q Consensus 117 ~~Nl~~F~~NYaivvl~vffl 137 (200)
+-|+..|.+=-+++++++.++
T Consensus 74 R~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 74 RRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 346666666555555555444
No 12
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.75 E-value=14 Score=30.34 Aligned_cols=31 Identities=35% Similarity=0.589 Sum_probs=23.4
Q ss_pred hccCCCccccccccCCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHH
Q 028996 72 LTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYA 124 (200)
Q Consensus 72 ~~lnPfa~lTt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~ 124 (200)
|++|||++||-|.| ||+- ...|++.|++.-.
T Consensus 34 F~~s~F~~Lt~d~L---------eFv~-------------lf~r~RGnlKEvE 64 (122)
T COG3877 34 FKMSKFEYLTSDQL---------EFVE-------------LFLRCRGNLKEVE 64 (122)
T ss_pred eecccccccCHhHh---------HHHH-------------HHHHHccCHHHHH
Confidence 57899999998875 5654 4678888887643
No 13
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=36.91 E-value=1.2e+02 Score=22.18 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028996 105 FPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSL 153 (200)
Q Consensus 105 ~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~ 153 (200)
.+....+...|.+.......+|+.+.+++++++.+...|..++..++..
T Consensus 40 ~~~~~~~~~~R~~ra~~N~~E~~~~f~~~~~~~~~~g~~~~~~~~l~~~ 88 (129)
T PF01124_consen 40 NPPTLPPWLERAQRAHQNFLENLPLFLVAVLLAILTGASPSLAALLAWV 88 (129)
T ss_dssp STTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-T-HHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3445566667777777778889999998888888886665555544443
No 14
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=36.48 E-value=1.1e+02 Score=23.89 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=34.7
Q ss_pred cccCCCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCc
Q 028996 101 GSYSFPSSPHTLK----LRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNW 168 (200)
Q Consensus 101 ~SyS~P~S~~eA~----~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~fLyFlRDew~~ 168 (200)
..|.+|++++|=. ..++| ++++++. ++..+..=..++|+++.+++|..++.+.+.-|-
T Consensus 7 ~~y~~P~~Ld~~~ri~~~~~DE---------~~~~~~~-~~~Gi~~~~~l~g~i~g~~~~~~~r~lK~g~g~ 68 (101)
T PRK13707 7 DKYRFPETLTNQSRWFGLPLDE---------LIPAAIC-IGWGITTSKYLFGIIAAVLVWFGIRKLKKGRGS 68 (101)
T ss_pred ccccCCCccCCCCeEEeeeHHH---------HHHHHHH-HHHHHHHchHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4566777665532 23343 2333333 333333334788889999999999998876554
No 15
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=36.17 E-value=1.2e+02 Score=22.80 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccC
Q 028996 143 PLALVGLISSLALWDFFKFCSDKWN 167 (200)
Q Consensus 143 PiALI~~la~~a~W~fLyFlRDew~ 167 (200)
--.++++++.+++|..++.+++.-+
T Consensus 37 ~~~~~g~i~g~~~~~~~~k~K~~~~ 61 (95)
T PF07178_consen 37 GHFLIGLILGIVLWWGYRKFKKGRG 61 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCC
Confidence 3367888889999998888887665
No 16
>PF15013 CCSMST1: CCSMST1 family
Probab=32.80 E-value=27 Score=26.55 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccCccch
Q 028996 140 YQMPLALVGLISSLALWDFFKFCSDKWNWDRY 171 (200)
Q Consensus 140 y~hPiALI~~la~~a~W~fLyFlRDew~~~~~ 171 (200)
.|.|..+.+.++.+.+|.. |+|+|-.+|+.
T Consensus 30 Wyq~~~is~sl~~fliyFC--~lReEnDiD~~ 59 (77)
T PF15013_consen 30 WYQVYPISLSLAAFLIYFC--FLREENDIDRW 59 (77)
T ss_pred ceeeehhHHHHHHHHHHHh--hccccccHHHH
Confidence 4567777777788888833 58999999873
No 17
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=32.41 E-value=2.7e+02 Score=22.95 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhH--HHHHHHHHHHHHHHHHHh
Q 028996 111 TLKLRVHENVKRYARNYASLFILFFACSLY------QMPL--ALVGLISSLALWDFFKFC 162 (200)
Q Consensus 111 eA~~RV~~Nl~~F~~NYaivvl~vfflsLy------~hPi--ALI~~la~~a~W~fLyFl 162 (200)
-++.|.++|.+.-..-+.+++.+.+...|+ ..|. ++++++.+.+.-.+.|+.
T Consensus 5 s~Kk~a~~N~~~l~~l~~~~~~~~~l~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (170)
T PF05620_consen 5 SAKKIAEENKATLKFLRLISLAVNILYLLLRLLFRYSSPSFWSWFGYLLFSLPAIFCYYF 64 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCchHHHHHHHHHHHHHHHHHHH
Confidence 478899999887654444333332222222 1232 566555555444444433
No 18
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=31.97 E-value=1.6e+02 Score=25.47 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Q 028996 109 PHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLA--LVGLISSLALWDFF 159 (200)
Q Consensus 109 ~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiA--LI~~la~~a~W~fL 159 (200)
+.++.-|+-+|....+.|..++++.+++..++.-+.. ++.+++.++.|.+.
T Consensus 126 v~~~~~~l~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~vIi~agl~~~~~~ 178 (195)
T COG2059 126 VLQAVWRLGKKALKGRGWVGLAVLTVIAILLLPTKFVHPLVIILAGLLGWLLG 178 (195)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHh
Confidence 5688889999999999999999999888888875555 77777777777665
No 19
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=29.11 E-value=1.6e+02 Score=30.57 Aligned_cols=73 Identities=21% Similarity=0.171 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHH----HHHHHHHHHHhhcccCccchhHHHHHHHH
Q 028996 109 PHTLKLRVHENVKRYARNYASLFILFF----ACSLYQMPLALVGLIS----SLALWDFFKFCSDKWNWDRYPVIRQVLVR 180 (200)
Q Consensus 109 ~~eA~~RV~~Nl~~F~~NYaivvl~vf----flsLy~hPiALI~~la----~~a~W~fLyFlRDew~~~~~p~~~q~l~~ 180 (200)
..++..|--.|-.-.-==|+++.++|+ |..|++.|+=+.++.+ ..++|.+ -.||+-|+|++-.++-.
T Consensus 654 v~~d~k~s~~nt~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~v~~~~~~~l~~q-----~~i~ef~~~vl~~~~s~ 728 (772)
T KOG2203|consen 654 VTQDIKRSEINTNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLFVGGLVSKALWVQ-----GLIPEFQNGVLPGVLSI 728 (772)
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHHHHHHHHHHHHHh-----ccchhhhcchhHHHHHH
Confidence 456666666662222222888888887 6899999987665544 4455544 34666778887777665
Q ss_pred Hhhhcc
Q 028996 181 IAQCGE 186 (200)
Q Consensus 181 ~~q~~~ 186 (200)
.++..|
T Consensus 729 ~~k~~~ 734 (772)
T KOG2203|consen 729 SGKFRT 734 (772)
T ss_pred HHHHHH
Confidence 555544
No 20
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=28.66 E-value=1.2e+02 Score=21.88 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=26.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhccc
Q 028996 117 HENVKRYARN--YASLFILFFACSLYQ-MPLALVGLISSLALWDFFKFCSDKW 166 (200)
Q Consensus 117 ~~Nl~~F~~N--Yaivvl~vfflsLy~-hPiALI~~la~~a~W~fLyFlRDew 166 (200)
.+=..++.+| |.-.+++++.++|.. .+..++..+..........-..||-
T Consensus 44 t~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~~~~~~~~~~~~EE~ 96 (106)
T PF04191_consen 44 TTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLAFLLYYIFIIRFEER 96 (106)
T ss_pred ccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3334445555 666777777777775 5665555544444443333333443
No 21
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=28.19 E-value=59 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=32.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHh
Q 028996 136 ACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIA 182 (200)
Q Consensus 136 flsLy~hPiALI~~la~~a~W~fLyFlRDew~~~~~p~~~q~l~~~~ 182 (200)
-+++-..++.+++|+.+.++|+++- +.+.++|.+.+.+-|-+
T Consensus 122 ~~s~~~l~v~livF~ilv~vwc~~a-----~~l~~~p~I~~~leryg 163 (193)
T TIGR00779 122 TLSMTNLLLTLIVFLIMVFFLCFTA-----YRLANFPGISETVEKYS 163 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCchHHHHHHHhC
Confidence 3455567788899999999998876 56788899988886654
No 22
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=27.55 E-value=5.2e+02 Score=24.37 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------------------HHHHHHHHHHHHhh------
Q 028996 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGL--------------------ISSLALWDFFKFCS------ 163 (200)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~--------------------la~~a~W~fLyFlR------ 163 (200)
.|.+.|+.+|+.. -+-++--|+--+.-|+-++|.++--+ +.+++.|.|++|+.
T Consensus 113 peV~~~~~~~l~~-Lr~i~~~fl~~I~~S~~~~P~~iR~ick~i~~~~~~kFP~~~~~~i~~~vG~fiflRfi~PAIvsP 191 (360)
T cd05133 113 EEVRTRLDASIRN-MRTVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIVGNLLYYRYMNPAIVAP 191 (360)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHhCCHHHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHhccccccCc
Confidence 4556666677655 45566667777778888888877533 57889999999987
Q ss_pred cccCc-cc------hhHHHHHHHHHhhhc
Q 028996 164 DKWNW-DR------YPVIRQVLVRIAQCG 185 (200)
Q Consensus 164 Dew~~-~~------~p~~~q~l~~~~q~~ 185 (200)
|.+|+ ++ .|-.|+-|..+||+-
T Consensus 192 e~~~ii~~~~~~~~~~~~rrnL~~iaKvL 220 (360)
T cd05133 192 DAFDIIDLSAGGQLTTDQRRNLGSIAKML 220 (360)
T ss_pred hhcCccccccCCCCCHHHHhhHHHHHHHH
Confidence 78888 42 566899999888764
No 23
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=26.71 E-value=1.1e+02 Score=25.79 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=40.0
Q ss_pred cccccCCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028996 81 TTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL 139 (200)
Q Consensus 81 Tt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsL 139 (200)
.+.|+-+..-=|++.|=. .=-+|..++.-..---.|-.|-..||.+|.+.|+.|.+
T Consensus 54 ~pt~~dKkiLvwtgrfKs---~~eIPe~Vs~e~l~~arnk~RIkv~~~Mi~lTiiGc~~ 109 (146)
T PF06388_consen 54 KPTDFDKKILVWTGRFKS---EEEIPETVSFEMLDAARNKARIKVCYIMIALTIIGCIA 109 (146)
T ss_pred CCcchhhhhhhhccccCC---hhhCcCccCHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 344555555556633321 12379998888888888999999999999999888854
No 24
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=26.00 E-value=1.7e+02 Score=21.74 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 028996 127 YASLFILFFACSLYQMPLALVGLISSLALWDFFK 160 (200)
Q Consensus 127 Yaivvl~vfflsLy~hPiALI~~la~~a~W~fLy 160 (200)
+.++..+++.++.+-|+..++..++... +...+
T Consensus 100 ~~~~~~l~~~l~~~~k~~~~~~~~~~~~-~l~~~ 132 (159)
T PF13231_consen 100 WWILAGLLLGLAFLTKYTFLLLIPALLL-YLLLS 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3366777777777777777666555444 44444
No 25
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.83 E-value=52 Score=25.76 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028996 147 VGLISSLALWDFFKFCS 163 (200)
Q Consensus 147 I~~la~~a~W~fLyFlR 163 (200)
+++|+++++++++.+|+
T Consensus 6 ~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCH 22 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555553
No 26
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=25.67 E-value=16 Score=17.39 Aligned_cols=7 Identities=86% Similarity=1.853 Sum_probs=5.1
Q ss_pred chHHHHh
Q 028996 16 DPAFESW 22 (200)
Q Consensus 16 ~~afe~W 22 (200)
||+|.+|
T Consensus 1 ~pafnsw 7 (8)
T PF08260_consen 1 DPAFNSW 7 (8)
T ss_pred Ccccccc
Confidence 5777777
No 27
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=25.36 E-value=1e+02 Score=32.49 Aligned_cols=46 Identities=30% Similarity=0.463 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhcccCc-----cchhHHHHHH
Q 028996 127 YASLFILFFACSLYQ-MPLALVGLISSLALWDFFKFCSDKWNW-----DRYPVIRQVL 178 (200)
Q Consensus 127 Yaivvl~vfflsLy~-hPiALI~~la~~a~W~fLyFlRDew~~-----~~~p~~~q~l 178 (200)
+.+..++++++.+.| -|+|.||.+. =++.++++|++ .++|.++-++
T Consensus 413 ~~~~ni~~il~II~w~~pVa~v~~i~------Nl~~l~~~~p~l~~il~~~~~l~~il 464 (827)
T COG5594 413 RISANILFILLIILWAFPVAFVGTIS------NLNTLSSLWPFLKFILKDPPFLAGIL 464 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------cchhHhhhhHHHHHHHhccHHHHHHH
Confidence 333334444444444 8999998876 45778888865 4456555443
No 28
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=24.97 E-value=1e+02 Score=25.46 Aligned_cols=18 Identities=11% Similarity=0.109 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028996 120 VKRYARNYASLFILFFAC 137 (200)
Q Consensus 120 l~~F~~NYaivvl~vffl 137 (200)
++-|..||.+++..+..+
T Consensus 44 ~sv~~~~y~l~~~~v~~L 61 (122)
T PF04530_consen 44 LSVLNDNYVLFVCAVCML 61 (122)
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 777999998887766554
No 29
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=24.84 E-value=3.7e+02 Score=24.53 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=47.0
Q ss_pred cCCCccccccccCCCCCCchhhhhccccccCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh------------
Q 028996 74 VNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRV-HENVKRYARNYASLFILFFACSLY------------ 140 (200)
Q Consensus 74 lnPfa~lTt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV-~~Nl~~F~~NYaivvl~vfflsLy------------ 140 (200)
-+||+.---+-+.+...+|= .| ........|.++.+.--|. ++++.++++++..++.++.-+...
T Consensus 77 ~~~~~~~l~~~l~~~a~~~~-~~-~~~~~l~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~ 154 (340)
T PF12794_consen 77 SSPFSVALGAALLAMALFWL-VF-EFFRRLLRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLA 154 (340)
T ss_pred cCchHHHHHHHHHHHHHHHH-HH-HHHHHHHCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Confidence 34544333333333334443 22 2234555566655443332 455556666655444333322221
Q ss_pred hhhHHHHHHHHH--HHHHHHHHHhhcccCccch
Q 028996 141 QMPLALVGLISS--LALWDFFKFCSDKWNWDRY 171 (200)
Q Consensus 141 ~hPiALI~~la~--~a~W~fLyFlRDew~~~~~ 171 (200)
...++=++++++ +..|.....+|+++|..+.
T Consensus 155 ~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~ 187 (340)
T PF12794_consen 155 RDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQP 187 (340)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccccccccC
Confidence 334444455444 3456667788999998665
No 30
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=24.30 E-value=3.5e+02 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 028996 137 CSLYQMPLALVGLISSLALWDFFKFCSDK 165 (200)
Q Consensus 137 lsLy~hPiALI~~la~~a~W~fLyFlRDe 165 (200)
-.+..+|+-|..+++.++++..+++++++
T Consensus 52 s~~~~~~~~l~~ll~~~~~~~~~~~~~kK 80 (130)
T PF10864_consen 52 SAILGSPVHLFWLLALAFSYWAMYYLKKK 80 (130)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557899999999999999999999864
No 31
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.21 E-value=89 Score=20.59 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028996 115 RVHENVKRYARNYASLFILFFACS 138 (200)
Q Consensus 115 RV~~Nl~~F~~NYaivvl~vffls 138 (200)
+-++-.++|++|-..++-+++++.
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~ 27 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLI 27 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHH
Confidence 356778888888888777766554
No 32
>COG0368 CobS Cobalamin-5-phosphate synthase [Coenzyme metabolism]
Probab=23.36 E-value=1.9e+02 Score=25.69 Aligned_cols=116 Identities=14% Similarity=0.009 Sum_probs=61.2
Q ss_pred cccccccchhhhHHHHHHHHhhhhccCCCccccccccCCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHH
Q 028996 49 KETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYA 128 (200)
Q Consensus 49 ~~~~~~~g~~~~~~~~~~t~~sl~~lnPfa~lTt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYa 128 (200)
+++..+.|+.+-++..+.+..+|..+-+.. ...-=......-|.+......-+...+...++ =-+++..+...=+.
T Consensus 101 DsrvG~~Gv~ali~vlll~~~~L~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~ 176 (246)
T COG0368 101 DSRVGAGGVAALILVLLLKVLALASLLDLG-AAALLALAEVLAKSRMLLVALLSKPPYAGLGG---LGKEFADPRKGLIG 176 (246)
T ss_pred CCCcCccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcch---hhHHHhcccchHHH
Confidence 345556677777777777777776665520 00000000111112122221122222222222 23445555555566
Q ss_pred HHHHHH-HHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCc
Q 028996 129 SLFILF-FACSLYQMP-LALVGLISSLALWDFFKFCSDKWNW 168 (200)
Q Consensus 129 ivvl~v-fflsLy~hP-iALI~~la~~a~W~fLyFlRDew~~ 168 (200)
+..+++ ..+.++.-| ..+...+++++.|.+.+.+..+.|=
T Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~r~~GG 218 (246)
T COG0368 177 ALLLLVLLLLALLFGLSGAIAVAVALLAAALLGRLAKRRFGG 218 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 654444 555556666 5566666789999999999999987
No 33
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=23.10 E-value=3.9e+02 Score=25.24 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhccc
Q 028996 106 PSSPHTLKLRVHENVKRYARNYASLF----------ILFFACSLYQM-PLALVGLISSLALWDFFKFCSDKW 166 (200)
Q Consensus 106 P~S~~eA~~RV~~Nl~~F~~NYaivv----------l~vfflsLy~h-PiALI~~la~~a~W~fLyFlRDew 166 (200)
..+.+|...|+.+++.....+|...+ ++.+...++.+ +++++.++.+...+...++...++
T Consensus 118 ~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~ 189 (582)
T PRK11176 118 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRF 189 (582)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888877776666654211 11111112223 456666666666566665665443
No 34
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=23.05 E-value=3.9e+02 Score=25.01 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=53.6
Q ss_pred cCCCCChHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHhhccc--Cc-cc
Q 028996 103 YSFPSSPHTLKLR------VHENVKRYARNYASLFILFFACSLYQMPLALVG---LISSLALWDFFKFCSDKW--NW-DR 170 (200)
Q Consensus 103 yS~P~S~~eA~~R------V~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~---~la~~a~W~fLyFlRDew--~~-~~ 170 (200)
++.|.++.+.-.| .+.|+.+|..=-....+++..+.++++|+-... ..+++..|+.+.++|++= .. ++
T Consensus 58 ~~~~~~l~~~~~~~~~q~G~~~~~~~~~~l~~~~~l~~~~v~~~~~~l~v~~~~~~~~~llp~~~~~~~~~rr~krf~~q 137 (309)
T COG4965 58 LSAQDSLKRLDRKQPRQAGLRVSLARLILLSAGAGLAVALVAWLGLSLLVALVALIGAALLPRLVLRSRRARRLKRFGQQ 137 (309)
T ss_pred ccccchhhhHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555 345777777666666677777777777654333 335666788888888643 22 67
Q ss_pred hhHHHHHHHHHhhhc
Q 028996 171 YPVIRQVLVRIAQCG 185 (200)
Q Consensus 171 ~p~~~q~l~~~~q~~ 185 (200)
.|-.=+++++-.+.|
T Consensus 138 lP~aLdlivr~l~aG 152 (309)
T COG4965 138 LPEALDLIVRALRAG 152 (309)
T ss_pred hhHHHHHHHHHhhCC
Confidence 888888887766554
No 35
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.68 E-value=1.1e+02 Score=24.14 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc-cCccchhHHHHH
Q 028996 143 PLALVGLISSLALWDFFKFCSDK-WNWDRYPVIRQV 177 (200)
Q Consensus 143 PiALI~~la~~a~W~fLyFlRDe-w~~~~~p~~~q~ 177 (200)
..-++++.+.+++|..+--.--. -.+|-||++-=-
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLn 39 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLN 39 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHH
Confidence 34567888888999887665543 367999987533
No 36
>PRK09459 pspG phage shock protein G; Reviewed
Probab=22.48 E-value=1.6e+02 Score=22.58 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 028996 128 ASLFILFFACSLYQMPLALVGLISSLALWDFFKFC 162 (200)
Q Consensus 128 aivvl~vfflsLy~hPiALI~~la~~a~W~fLyFl 162 (200)
.+++++.|+..|+--=++++|.++.+++=..+-++
T Consensus 3 EllFvl~F~~~LlvTGiSllgv~aAl~va~~vM~l 37 (76)
T PRK09459 3 ELLFVIGFFVMLLVTGISLLGIIAALGVATLVMFL 37 (76)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888777666554333333
No 37
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=22.35 E-value=47 Score=24.70 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=17.2
Q ss_pred cccCchHHHHhhhhcCchhh
Q 028996 12 LNVPDPAFESWLRDSGYLEI 31 (200)
Q Consensus 12 Lsvp~~afe~Wlrdsg~le~ 31 (200)
|.+++..|-+||||.|++-.
T Consensus 34 L~i~~~~l~~~Lr~~g~l~~ 53 (111)
T PF03374_consen 34 LGIGRNKLFQWLREKGWLYR 53 (111)
T ss_pred hCCCHHHHHHHHHhCCceEE
Confidence 47788999999999999944
No 38
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=2.1e+02 Score=23.76 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHH--HHHHHHHHHHHH-HhhhhHHHHHHHHHHHHH
Q 028996 123 YARN--YASLFILFFACS-LYQMPLALVGLISSLALW 156 (200)
Q Consensus 123 F~~N--Yaivvl~vffls-Ly~hPiALI~~la~~a~W 156 (200)
+.+| |...+++.+.+. ++.+++++++++++.+.-
T Consensus 115 ~VRHP~Y~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~ 151 (187)
T COG2020 115 IVRHPIYLGLLLFALGTGLLLGSLWALLIFVVLVALL 151 (187)
T ss_pred eecCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455 777777777776 666888888777665553
No 39
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=22.22 E-value=3.5e+02 Score=20.68 Aligned_cols=26 Identities=12% Similarity=0.451 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhhHH
Q 028996 116 VHENVKRYARNYASLFILFFACSLY--QMPLA 145 (200)
Q Consensus 116 V~~Nl~~F~~NYaivvl~vfflsLy--~hPiA 145 (200)
.++=+-||-.- .+.++.+.++ |.|..
T Consensus 72 ~~~~iiHf~~~----~~~~~~~~~~~gW~~~~ 99 (136)
T PF11457_consen 72 LKQTIIHFIIT----YAIFLILAYLLGWFPLS 99 (136)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhCCcchh
Confidence 44444555444 4444444444 88885
No 40
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=22.19 E-value=6e+02 Score=23.10 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--------------------HHHHHHHHHHHHHHhh------c
Q 028996 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALV--------------------GLISSLALWDFFKFCS------D 164 (200)
Q Consensus 111 eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI--------------------~~la~~a~W~fLyFlR------D 164 (200)
+.+.++.+|+..-+. |+=-++-.+.-++..+|..+= ..+.++..|.|++|+- +
T Consensus 113 ev~~~~~~~l~~L~~-~~~~fl~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRfi~PAIvsP~ 191 (331)
T cd05132 113 EVKKIIKPRVTQLIE-ICNRFLDTIISSLNRLPYGIRWICKQIRSLTKRKFPSATDAEICSLIGYFFFLRFINPAIVTPQ 191 (331)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhhHHhcCch
Confidence 345667777777644 777777666667777776542 1245678899999986 7
Q ss_pred ccCcc-c--hhHHHHHHHHHhhh
Q 028996 165 KWNWD-R--YPVIRQVLVRIAQC 184 (200)
Q Consensus 165 ew~~~-~--~p~~~q~l~~~~q~ 184 (200)
.+|+. . .|-.|+-|..+||+
T Consensus 192 ~fgl~~~~~~~~~rrnL~lIaKv 214 (331)
T cd05132 192 AYMLVDGEPSDTARKNLTLIAKM 214 (331)
T ss_pred hcCCcCCCCCHHHHHHHHHHHHH
Confidence 89993 3 45788988888865
No 41
>PF11911 DUF3429: Protein of unknown function (DUF3429); InterPro: IPR021836 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 147 to 245 amino acids in length.
Probab=21.30 E-value=4.3e+02 Score=21.12 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=36.2
Q ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHHHhhcccCc--cchhHHHHHHHHHh
Q 028996 136 ACSLY-QMPLALVGLISSLALWDFFKFCSDKWNW--DRYPVIRQVLVRIA 182 (200)
Q Consensus 136 flsLy-~hPiALI~~la~~a~W~fLyFlRDew~~--~~~p~~~q~l~~~~ 182 (200)
+..+. ..|.+++.+++.+.+....+.-..++|. +-|.-+|..|--++
T Consensus 83 ~all~~~~~~~l~~l~~gf~~~~~~D~~~~~~~~~p~wy~~LR~~LT~vv 132 (142)
T PF11911_consen 83 AALLLGPPPWALLLLAAGFLALLLVDRRLWRRGLYPSWYLRLRFRLTAVV 132 (142)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 33444 7889999999999999999888888766 44888888775554
No 42
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=21.10 E-value=1.9e+02 Score=30.13 Aligned_cols=27 Identities=7% Similarity=-0.084 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccC
Q 028996 141 QMPLALVGLISSLALWDFFKFCSDKWN 167 (200)
Q Consensus 141 ~hPiALI~~la~~a~W~fLyFlRDew~ 167 (200)
+|-..+++|++.++++.++.+.|-+|.
T Consensus 33 ~~~~~l~~~~~a~~~al~~~lrrfr~P 59 (820)
T PF13779_consen 33 LRWALLAAFAAAALAALVRGLRRFRWP 59 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 455677777777777776777776663
No 43
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=21.08 E-value=2.2e+02 Score=25.30 Aligned_cols=12 Identities=25% Similarity=0.395 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHh
Q 028996 129 SLFILFFACSLY 140 (200)
Q Consensus 129 ivvl~vfflsLy 140 (200)
++++.+++|||+
T Consensus 117 ~~~~~v~a~~lF 128 (224)
T PF03839_consen 117 LLLVGVIAICLF 128 (224)
T ss_pred HHHHHHHHHHhh
Confidence 345555577776
No 44
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=20.84 E-value=1.7e+02 Score=24.77 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=34.8
Q ss_pred HhhhhHHHHHHHHHHHHHHH---HHHhhcccCccchhHHHHHHHH
Q 028996 139 LYQMPLALVGLISSLALWDF---FKFCSDKWNWDRYPVIRQVLVR 180 (200)
Q Consensus 139 Ly~hPiALI~~la~~a~W~f---LyFlRDew~~~~~p~~~q~l~~ 180 (200)
....|.+++++++.+++|.- |.=+.|.|.+-.+-.+.-.++-
T Consensus 16 ~~g~p~~fvv~~~~i~vw~~~gpl~~fsdtWQl~int~vaii~~l 60 (141)
T COG5478 16 FLGRPPAFVVALVAILVWAGSGPLFGFSDTWQLVINTSVAIITFL 60 (141)
T ss_pred HhcCChHHHHHHHHHHHHHccCcccCcccceeEeeehhHHHHHHH
Confidence 34689999999999999999 8889999999887666555443
No 45
>PF10028 DUF2270: Predicted integral membrane protein (DUF2270); InterPro: IPR014470 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.08 E-value=2.3e+02 Score=24.86 Aligned_cols=65 Identities=26% Similarity=0.416 Sum_probs=41.0
Q ss_pred hhccCCCccccccccCCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028996 71 LLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQ 141 (200)
Q Consensus 71 l~~lnPfa~lTt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~ 141 (200)
.+.-|=|+.+=-++=.....-|+.+..+..+.=.++-|..||..| |-++||.-++++.+..-+.+
T Consensus 77 ~lE~~~~A~~L~p~~~~~~~~W~~~La~dlr~P~~~is~~eAl~r------RLRRnY~~i~~ill~AW~~K 141 (185)
T PF10028_consen 77 WLERNFFAPMLDPSQGVEDPDWREELAEDLRRPTFKISYREALGR------RLRRNYLWIFLILLLAWLFK 141 (185)
T ss_pred HHHHHhhHHHhCCCCCCCCccHHHHHHHHHcCCCCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 344555554333322333444995554444566677789999876 67899999888777666655
Done!