Query 028996
Match_columns 200
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 09:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pcv_A Leukotriene C4 synthase 48.4 60 0.0021 25.6 7.1 32 110-144 46-77 (156)
2 2q7r_A Arachidonate 5-lipoxyge 42.1 67 0.0023 25.4 6.4 32 110-144 50-81 (161)
3 2eap_A Lymphocyte cytosolic pr 21.9 38 0.0013 25.5 1.6 29 2-30 7-38 (90)
4 3fay_A P195, RAS GTPase-activa 20.8 1.8E+02 0.0062 25.5 6.1 74 111-185 168-274 (387)
5 2knc_B Integrin beta-3; transm 19.9 1.5E+02 0.0051 21.1 4.4 32 126-164 9-40 (79)
6 2jdj_A HAPK, REDY-like protein 17.7 28 0.00096 26.7 0.1 17 13-29 13-29 (105)
7 2ixo_A Serine/threonine-protei 16.4 1.3E+02 0.0046 26.8 4.2 156 9-185 10-220 (323)
8 2kpq_A Uncharacterized protein 15.7 1.3E+02 0.0043 22.3 3.3 28 155-182 32-59 (100)
9 3fpn_B Geobacillus stearotherm 15.3 66 0.0022 23.6 1.6 26 4-29 9-38 (106)
10 2yl4_A ATP-binding cassette SU 14.9 5.2E+02 0.018 23.4 7.8 17 108-124 117-133 (595)
No 1
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=48.41 E-value=60 Score=25.61 Aligned_cols=32 Identities=6% Similarity=0.156 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028996 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPL 144 (200)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPi 144 (200)
-|...|.+.|- .+||-+.+++.+.+.+..+|.
T Consensus 46 f~Ra~RAH~N~---lE~~P~fl~ll~l~~l~~~~~ 77 (156)
T 3pcv_A 46 FERVYRAQVNC---SEYFPLFLATLWVAGIFFHEG 77 (156)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHHHcCCHH
Confidence 46777888884 567777777777777776673
No 2
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=42.08 E-value=67 Score=25.37 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028996 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPL 144 (200)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPi 144 (200)
-|...|.|.| +.+|+.+..++.+.+.+..+|.
T Consensus 50 f~R~~RAh~N---~lE~~P~fl~llll~~l~g~~~ 81 (161)
T 2q7r_A 50 FERVYTANQN---CVDAYPTFLAVLWSAGLLCSQV 81 (161)
T ss_dssp HHHHHHHHHH---HTTHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHh---HHHHHHHHHHHHHHHHHcCChH
Confidence 4667777777 5678888888888888877666
No 3
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.94 E-value=38 Score=25.54 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=20.7
Q ss_pred CCcccCCCccccc---CchHHHHhhhhcCchh
Q 028996 2 GKVFASNPLSLNV---PDPAFESWLRDSGYLE 30 (200)
Q Consensus 2 gm~F~~NPLSLsv---p~~afe~Wlrdsg~le 30 (200)
||+|..=|.-..| -..++..|||+.||-|
T Consensus 7 ~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~ 38 (90)
T 2eap_A 7 GMALRNVPFRSEVLGWDPDSLADYFKKLNYKD 38 (90)
T ss_dssp CSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHH
T ss_pred cccccccccCccccccCHHHHHHHHHHcCCch
Confidence 7887665554433 3578999999999944
No 4
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=20.79 E-value=1.8e+02 Score=25.52 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------------------HHHHHHHHHHHHhh------c
Q 028996 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGL--------------------ISSLALWDFFKFCS------D 164 (200)
Q Consensus 111 eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~--------------------la~~a~W~fLyFlR------D 164 (200)
|.+.++.+|+... ++|+--++-.+.-+.-..|..+--+ +.++..|.|++|+- +
T Consensus 168 ev~~~l~~n~~~L-~~~~~~~~~~I~~s~~~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRFi~PAIvsP~ 246 (387)
T 3fay_A 168 EVKTRLDSSIRNM-RAVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPD 246 (387)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHCCCCCHHHHHSTT
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhhHHhCChH
Confidence 4445566776655 5677777777777777777766442 45677888888875 8
Q ss_pred ccCc-cch------hHHHHHHHHHhhhc
Q 028996 165 KWNW-DRY------PVIRQVLVRIAQCG 185 (200)
Q Consensus 165 ew~~-~~~------p~~~q~l~~~~q~~ 185 (200)
.+|+ +.+ |-.|+-|..+||+-
T Consensus 247 ~fgl~~~~p~~~~~~~~rr~L~liaKvL 274 (387)
T 3fay_A 247 AFDIIDLSAGGQLTTDQRRNLGSIAKML 274 (387)
T ss_dssp TTTSSCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred hcCcccCCcccCCCHHHHhHHHHHHHHH
Confidence 8998 544 46788888888653
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.88 E-value=1.5e+02 Score=21.12 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 028996 126 NYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD 164 (200)
Q Consensus 126 NYaivvl~vfflsLy~hPiALI~~la~~a~W~fLyFlRD 164 (200)
|...+++.+++.. -|||++. +.+|-++-...|
T Consensus 9 n~~~Iv~gvi~gi------lliGlll-lliwk~~~~i~D 40 (79)
T 2knc_B 9 DILVVLLSVMGAI------LLIGLAA-LLIWKLLITIHD 40 (79)
T ss_dssp CSHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHH
T ss_pred CchhhHHHHHHHH------HHHHHHH-HHHHHHHHHHHH
Confidence 4555555554432 2455554 445544444433
No 6
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=17.69 E-value=28 Score=26.70 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=14.3
Q ss_pred ccCchHHHHhhhhcCch
Q 028996 13 NVPDPAFESWLRDSGYL 29 (200)
Q Consensus 13 svp~~afe~Wlrdsg~l 29 (200)
.++..+||+|.|+..|=
T Consensus 13 g~d~~aFe~w~~evD~P 29 (105)
T 2jdj_A 13 VAQADAFEFWVQNVDYA 29 (105)
T ss_dssp GGGHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHhchhh
Confidence 46788999999998874
No 7
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A*
Probab=16.40 E-value=1.3e+02 Score=26.82 Aligned_cols=156 Identities=10% Similarity=0.110 Sum_probs=78.5
Q ss_pred CcccccCc------hHHHHhhhhcCchhhhhhccccccccccccCcc--ccccccchhhhHHHHHHHHhhhhccCCCccc
Q 028996 9 PLSLNVPD------PAFESWLRDSGYLEILDTATTTSANAVTTASTK--ETTTATTITHSLLHYLYTFISLLTVNPFAKL 80 (200)
Q Consensus 9 PLSLsvp~------~afe~Wlrdsg~le~ld~~~s~~a~as~~~s~~--~~~~~~g~~~~~~~~~~t~~sl~~lnPfa~l 80 (200)
+.+...|. ++++.|.+-..|-+++.=-..-+.+-.....+. ..-.-+...-.++.-+.++-++..-+|=..
T Consensus 10 ~~~f~~P~KrI~~~~D~~~f~~S~ay~~i~~fI~~l~~sv~g~~~~~~~~~~~~s~~v~~l~~iL~~l~~~ide~PP~~- 88 (323)
T 2ixo_A 10 HATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHKYTTLISHCSDPDPHATASSIAMVNGLMGVLDKLAHLIDETPPLP- 88 (323)
T ss_dssp TCCCCCCBCCCCSHHHHHHGGGBHHHHHHHHHHHHHHHHHTTCSSCCTTCCCCSSHHHHHHHHHHHHHHHTTTTSCCCC-
T ss_pred CCeecCCeeeECCHhHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 44555554 789999999999888764221111100111011 011123334455666677777777777221
Q ss_pred cccccCCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHH-------------------------------H
Q 028996 81 TTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYA-------------------------------S 129 (200)
Q Consensus 81 Tt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYa-------------------------------i 129 (200)
.|=| |=+ +.+.+=..|+++++........ =
T Consensus 89 ---------~p~R--FGN--------~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRIDYGTGHE 149 (323)
T 2ixo_A 89 ---------GPRR--YGN--------LACREWHHKLDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRLDYGTGHE 149 (323)
T ss_dssp ---------C-----CCC--------SHHHHHHHHHHHHHHHHHHHHSCGGGGGGHHHHHHHHHTSSCCTTTCEECHHHH
T ss_pred ---------CCCc--cCC--------HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhccCCCcccccCcHHH
Confidence 2222 111 2244444444444443222210 1
Q ss_pred HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHhhc--------------ccCccchhHHHHHHHHHhhhc
Q 028996 130 LFILFFACSLYQMPL--ALVGLISSLALWDFFKFCSD--------------KWNWDRYPVIRQVLVRIAQCG 185 (200)
Q Consensus 130 vvl~vfflsLy~hPi--ALI~~la~~a~W~fLyFlRD--------------ew~~~~~p~~~q~l~~~~q~~ 185 (200)
+-.++|.|||++.-+ .--+.+++.+.+-+|..+|. .||||.|=++ -.+...||+.
T Consensus 150 L~Fl~fL~cL~klgil~~d~~a~vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVWGLDDy~FL-PfifGsAQL~ 220 (323)
T 2ixo_A 150 LSFMATVAALDMLGMFPHHRGADVFLLFNKYYTIMRRLILTYTLEPAGSHGVWGLDDHFHL-VYILGSSQWQ 220 (323)
T ss_dssp HHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCEECC------CSSSCSH-HHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCcccccchhHHHHHHHHHHHHHHHHHcccccCCCCCcccccchhhc-chhhhHhhhc
Confidence 334555677876543 11123456667777888875 7999998555 4567888954
No 8
>2kpq_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Agrobacterium tumefaciens str}
Probab=15.74 E-value=1.3e+02 Score=22.33 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHh
Q 028996 155 LWDFFKFCSDKWNWDRYPVIRQVLVRIA 182 (200)
Q Consensus 155 ~W~fLyFlRDew~~~~~p~~~q~l~~~~ 182 (200)
+++-++||.++|+.++-|..+.++=.|-
T Consensus 32 v~dA~~~L~~~WP~~~g~~y~~Al~aC~ 59 (100)
T 2kpq_A 32 VYEAFDFLQHEWPARGDRAHEQALRLCR 59 (100)
T ss_dssp HHHHHHHHHHCCSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence 5788899999999887887766665554
No 9
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=15.26 E-value=66 Score=23.61 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.0
Q ss_pred cccCCCcccccCc----hHHHHhhhhcCch
Q 028996 4 VFASNPLSLNVPD----PAFESWLRDSGYL 29 (200)
Q Consensus 4 ~F~~NPLSLsvp~----~afe~Wlrdsg~l 29 (200)
.|+.++|+|.+.+ .++.++|.+-||-
T Consensus 9 ~~~~~~l~l~~G~~i~~~~l~~~L~~~GY~ 38 (106)
T 3fpn_B 9 EYRELVVSLRVGMEIERNALLRRLVDIQYD 38 (106)
T ss_dssp ----CCEEEETTCBCCHHHHHHHHHHTTCE
T ss_pred HHhhCCeEEECCCCcCHHHHHHHHHHcCCE
Confidence 4788999998877 7999999999997
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=14.88 E-value=5.2e+02 Score=23.39 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHHHHHH
Q 028996 108 SPHTLKLRVHENVKRYA 124 (200)
Q Consensus 108 S~~eA~~RV~~Nl~~F~ 124 (200)
+.+|...|+...+....
T Consensus 117 ~~g~l~~r~~~d~~~i~ 133 (595)
T 2yl4_A 117 RTGELINRLSSDTALLG 133 (595)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 56788888876555444
Done!