Query 028996
Match_columns 200
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 09:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028996.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028996hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uuia1 f.56.1.1 (A:2-147) Leu 52.6 18 0.0013 26.4 6.5 32 110-144 45-76 (146)
2 d2q7ra1 f.56.1.1 (A:1-139) Ara 47.5 28 0.0021 25.2 6.9 33 110-145 50-82 (139)
3 d2ixna1 a.268.1.1 (A:3-299) Se 17.4 2.4E+02 0.018 22.7 12.3 156 16-192 8-214 (297)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 13.5 1.7E+02 0.013 19.1 5.2 24 85-117 3-26 (100)
5 d1jdla_ a.3.1.1 (A:) Cytochrom 12.4 70 0.0051 21.8 2.9 11 16-26 63-73 (118)
6 d1j8ia_ d.9.1.1 (A:) Lymphotac 9.6 67 0.0049 21.7 1.9 19 20-40 53-71 (93)
7 d1q79a2 d.218.1.3 (A:19-214) P 8.4 77 0.0056 23.9 2.0 24 7-30 5-35 (196)
8 d2iida1 c.3.1.2 (A:4-319,A:433 7.9 73 0.0053 22.1 1.5 20 7-26 1-20 (370)
9 d2hzaa1 a.43.1.3 (A:1-48) Nick 7.5 60 0.0044 19.9 0.8 20 10-29 4-26 (48)
10 d1tzva_ a.79.1.1 (A:) Antiterm 6.9 1.3E+02 0.0096 20.2 2.5 20 163-182 69-88 (141)
No 1
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.55 E-value=18 Score=26.42 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028996 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPL 144 (200)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPi 144 (200)
-|...|.|.|..+ |+-+..++.+.+.++.+|.
T Consensus 45 fera~RaH~N~~E---~~P~fL~ll~l~~l~~~~~ 76 (146)
T d2uuia1 45 FERVYRAQVNCSE---YFPLFLATLWVAGIFFHEG 76 (146)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhhhHh---hHHHHHHHHHHHHhccCHH
Confidence 5788899999665 6666666666666666785
No 2
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.50 E-value=28 Score=25.17 Aligned_cols=33 Identities=9% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028996 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPLA 145 (200)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiA 145 (200)
-|...|.|.|. ..|+.+..++.+.+.+..+|..
T Consensus 50 f~ra~RaH~N~---~E~~p~~L~~l~~~~l~~~~~~ 82 (139)
T d2q7ra1 50 FERVYTANQNC---VDAYPTFLAVLWSAGLLCSQVP 82 (139)
T ss_dssp HHHHHHHHHHH---TTHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHhhh---HhhHHHHHHHHHHHHhccCHHH
Confidence 46778888884 5678888888888888888864
No 3
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.37 E-value=2.4e+02 Score=22.66 Aligned_cols=156 Identities=12% Similarity=0.175 Sum_probs=82.6
Q ss_pred chHHHHhhhhcCchhhhhhcccccccccc-ccCccccccccchhhhHHHHHHHHhhhhccCCCccccccccCCCCCCchh
Q 028996 16 DPAFESWLRDSGYLEILDTATTTSANAVT-TASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTR 94 (200)
Q Consensus 16 ~~afe~Wlrdsg~le~ld~~~s~~a~as~-~~s~~~~~~~~g~~~~~~~~~~t~~sl~~lnPfa~lTt~Dl~~~~rPWr~ 94 (200)
..+.+.|.|-..|-|+++--..-+. +.. ...++.....+...-.++.-+.++-.+..-+|= ..+..|+|
T Consensus 8 ~~D~~~w~~S~Ay~~i~~fI~~l~~-sv~g~~~s~~~~~~s~~i~~l~~il~~l~~~i~e~Pp--------~~~~~~~R- 77 (297)
T d2ixna1 8 PDDMKLWEESPTRAHFTKFIIDLAE-SVKGHENSQYKEPISESINSMMNLLSQIKDITQKHPV--------IKDADSSR- 77 (297)
T ss_dssp TTTTHHHHSSHHHHHHHHHHHHHHH-TTTTCCTTCCCSSCCHHHHHHHHHHHHHHHHHTTCCC--------CC-----C-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH-HhcCccCCCccCCCCHHHHHHHHHHHHHHHHHHhCCC--------CCCCCcCc-
Confidence 4578999999999888875322222 111 111111222344455666677777777777871 11223455
Q ss_pred hhhccccccCCCCChHHHHHHHHHHHH-------------------HHHHH-------------HHHHHHHHHHHHHhhh
Q 028996 95 EFIGALGSYSFPSSPHTLKLRVHENVK-------------------RYARN-------------YASLFILFFACSLYQM 142 (200)
Q Consensus 95 eFl~~~~SyS~P~S~~eA~~RV~~Nl~-------------------~F~~N-------------Yaivvl~vfflsLy~h 142 (200)
+|. ..+.+=..||++|+. .|-.| -.+ -.++|.|+|.+.
T Consensus 78 --FGN-------~afR~w~~~l~~~~~~ll~~~l~~~~~~~i~EL~~Yl~~SFGn~tRiDYGTGHEL-~Fl~fL~~L~~~ 147 (297)
T d2ixna1 78 --FGK-------VEFRDFYDEVSRNSRKILRSEFPSLTDEQLEQLSIYLDESWGNKRRIDYGSGHEL-NFMCLLYGLYSY 147 (297)
T ss_dssp --CCC-------THHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCBTTTTEECHHHHH-HHHHHHHHHHHT
T ss_pred --ccC-------HHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHhccCCCccccCCchHHH-HHHHHHHHHHHc
Confidence 221 123333333443332 23222 122 245667777763
Q ss_pred ---hHH-HHHHHHHHHHHHHHHHhh--------------cccCccchhHHHHHHHHHhhhccccccCc
Q 028996 143 ---PLA-LVGLISSLALWDFFKFCS--------------DKWNWDRYPVIRQVLVRIAQCGELSNISS 192 (200)
Q Consensus 143 ---PiA-LI~~la~~a~W~fLyFlR--------------Dew~~~~~p~~~q~l~~~~q~~~~~~~~~ 192 (200)
+.+ --+.+++.+.|-++...| ..||||.|=++- .+...||+..-..+.|
T Consensus 148 gil~~~~d~~a~vL~vF~rYl~l~R~Lq~~Y~LEPAGSHGvWgLDDy~fLP-fi~GsaQL~~~~~~~P 214 (297)
T d2ixna1 148 GIFNLSNDSTNLVLKVFIEYLKIMRILETKYWLEPAGSHGVWGLDDYHFLP-FLFGAFQLTTHKHLKP 214 (297)
T ss_dssp TSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHTCEECCCSCSCSSSSSCSHH-HHHHHHHTTTCSSCCG
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCcccccccch-hhhhhhhhccCCCCCc
Confidence 222 355566777788887777 369998875542 4678888875444333
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.51 E-value=1.7e+02 Score=19.11 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=13.1
Q ss_pred cCCCCCCchhhhhccccccCCCCChHHHHHHHH
Q 028996 85 FSAKTPSWTREFIGALGSYSFPSSPHTLKLRVH 117 (200)
Q Consensus 85 l~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~ 117 (200)
+-+.+.||. .+|+++.+....++.
T Consensus 3 ~~~~P~~~q---------l~fqd~as~~a~~i~ 26 (100)
T d3dtub2 3 IIGRPQPGG---------TGFQPSASPVATQIH 26 (100)
T ss_dssp EEESCCTTC---------CSCCCCCSHHHHHHH
T ss_pred CCCCCCCCC---------cCCCCCCCHHHHHHH
Confidence 345567887 345555555444443
No 5
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=12.37 E-value=70 Score=21.77 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=8.3
Q ss_pred chHHHHhhhhc
Q 028996 16 DPAFESWLRDS 26 (200)
Q Consensus 16 ~~afe~Wlrds 26 (200)
++.++.||+|-
T Consensus 63 ~e~L~~~l~~P 73 (118)
T d1jdla_ 63 PENIIAYLPDP 73 (118)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHHHCH
Confidence 56788888874
No 6
>d1j8ia_ d.9.1.1 (A:) Lymphotactin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.63 E-value=67 Score=21.74 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=14.6
Q ss_pred HHhhhhcCchhhhhhcccccc
Q 028996 20 ESWLRDSGYLEILDTATTTSA 40 (200)
Q Consensus 20 e~Wlrdsg~le~ld~~~s~~a 40 (200)
+.|+++ +++.||++.....
T Consensus 53 ~~WVq~--~ik~Ld~k~~~~~ 71 (93)
T d1j8ia_ 53 ATWVRD--VVRSMDRKSNTRN 71 (93)
T ss_dssp CHHHHH--HHHHHHHHTTTTS
T ss_pred hHHHHH--HHHHHHhhccCCC
Confidence 679986 7889998876554
No 7
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.35 E-value=77 Score=23.94 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCCcccccCchH-------HHHhhhhcCchh
Q 028996 7 SNPLSLNVPDPA-------FESWLRDSGYLE 30 (200)
Q Consensus 7 ~NPLSLsvp~~a-------fe~Wlrdsg~le 30 (200)
.-|+|+..|.++ ++++|++.|+.|
T Consensus 5 T~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~p 35 (196)
T d1q79a2 5 TSPISLAAPKETDCLLTQKLVETLKPFGVFE 35 (196)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHGGGTCSC
T ss_pred CCCcccCCCChHHHHHHHHHHHHHHHcCCCC
Confidence 469999999998 999999988653
No 8
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=7.90 E-value=73 Score=22.09 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.9
Q ss_pred CCCcccccCchHHHHhhhhc
Q 028996 7 SNPLSLNVPDPAFESWLRDS 26 (200)
Q Consensus 7 ~NPLSLsvp~~afe~Wlrds 26 (200)
-|||+=|+-++..|+||+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEIA 20 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHHH
T ss_pred CCchHhhcCCccHHHHHHHH
Confidence 39999999999999987743
No 9
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.51 E-value=60 Score=19.94 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=15.3
Q ss_pred cccccCch---HHHHhhhhcCch
Q 028996 10 LSLNVPDP---AFESWLRDSGYL 29 (200)
Q Consensus 10 LSLsvp~~---afe~Wlrdsg~l 29 (200)
.|.|+|++ .||+.++..||-
T Consensus 4 isVslp~~Ll~~lD~~v~~~gy~ 26 (48)
T d2hzaa1 4 VTITLDDDLLETLDSLSQRRGYN 26 (48)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCC
T ss_pred EEEecCHHHHHHHHHHHHHcCCC
Confidence 46788885 677888888884
No 10
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
Probab=6.92 E-value=1.3e+02 Score=20.17 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=16.4
Q ss_pred hcccCccchhHHHHHHHHHh
Q 028996 163 SDKWNWDRYPVIRQVLVRIA 182 (200)
Q Consensus 163 RDew~~~~~p~~~q~l~~~~ 182 (200)
-++|.+++.+.+-+.++++|
T Consensus 69 ~~~~~~~rl~~~~~~iLr~a 88 (141)
T d1tzva_ 69 LEKWSLNRLSVVDRNVLRLA 88 (141)
T ss_dssp CSSSCGGGSCHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHH
Confidence 36899999888888888777
Done!