Your job contains 1 sequence.
>028997
MEGSLFDVHRAEPSQQQSMTTEPLDMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEVPQ
PSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKES
KPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRT
KTEEDRNKLATAIQEYAPAS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028997
(200 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139752 - symbol:AT4G11790 "AT4G11790" species... 521 8.8e-57 2
UNIPROTKB|F1MZD9 - symbol:NUP50 "Uncharacterized protein"... 118 5.3e-05 1
UNIPROTKB|B4E2D3 - symbol:NUP50 "cDNA FLJ54237, highly si... 112 6.5e-05 1
UNIPROTKB|Q5F473 - symbol:NUP50 "Uncharacterized protein"... 112 0.00031 1
UNIPROTKB|Q9UKX7 - symbol:NUP50 "Nuclear pore complex pro... 112 0.00031 1
POMBASE|SPBC365.13c - symbol:hba1 "Ran GTPase binding pro... 109 0.00058 1
ZFIN|ZDB-GENE-030131-1689 - symbol:nup50 "nucleoporin 50"... 109 0.00063 1
>TAIR|locus:2139752 [details] [associations]
symbol:AT4G11790 "AT4G11790" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0046907 "intracellular transport"
evidence=IEA] InterPro:IPR000156 Pfam:PF00638 PROSITE:PS50196
SMART:SM00160 EMBL:CP002687 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 GO:GO:0046907 EMBL:AY057537 EMBL:AY093979
IPI:IPI00534766 RefSeq:NP_567381.1 UniGene:At.3010
ProteinModelPortal:Q93ZH3 SMR:Q93ZH3 PRIDE:Q93ZH3
EnsemblPlants:AT4G11790.1 GeneID:826785 KEGG:ath:AT4G11790
TAIR:At4g11790 InParanoid:Q93ZH3 OMA:QFGANNG PhylomeDB:Q93ZH3
ProtClustDB:CLSN2713551 Genevestigator:Q93ZH3 Uniprot:Q93ZH3
Length = 443
Score = 521 (188.5 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 106/151 (70%), Positives = 121/151 (80%)
Query: 50 NDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKC 109
+DADG DE QPSSPS+KK+EE+GI VVHEVKCKLYVKSSDPADK WKD+GTG L IKC
Sbjct: 299 DDADGGDEQSQPSSPSVKKTEEKGITVVHEVKCKLYVKSSDPADKG-WKDKGTGNLYIKC 357
Query: 110 KEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTXXXXXXXXXXX 169
KEG+ KGTKESKPTILVRNDVG++LLNALLY G+KT+ QKN++VAIFH+
Sbjct: 358 KEGVDKGTKESKPTILVRNDVGKLLLNALLYAGMKTSPQKNALVAIFHSSDDSNENVTP- 416
Query: 170 XXXXRTFLIRTKTEEDRNKLATAIQEYAPAS 200
RTFLIRTK E R+ LATAIQEYAP+S
Sbjct: 417 ----RTFLIRTKNAEARDNLATAIQEYAPSS 443
Score = 81 (33.6 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 1 MEGSLFDVHR-AEPSQQQSMTTEPLDMQRAESSRQHVR 37
+EG F + P QQ S+T+ LD QRAE +R+HVR
Sbjct: 23 VEGIFFGTQKNVVPMQQSSVTSASLDKQRAELARKHVR 60
>UNIPROTKB|F1MZD9 [details] [associations]
symbol:NUP50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046907 "intracellular transport" evidence=IEA]
[GO:0005643 "nuclear pore" evidence=IEA] InterPro:IPR000156
InterPro:IPR015007 Pfam:PF00638 Pfam:PF08911 PROSITE:PS50196
SMART:SM00160 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0005643
GO:GO:0046907 OMA:ECKGGDE GeneTree:ENSGT00440000035348
EMBL:DAAA02014927 IPI:IPI00716408 UniGene:Bt.37218
Ensembl:ENSBTAT00000023480 Uniprot:F1MZD9
Length = 465
Score = 118 (46.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 42/155 (27%), Positives = 68/155 (43%)
Query: 44 QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
Q + N+ G DE P + +E + + KCKL+ K ++ +K++G G
Sbjct: 322 QAESGSNECKGGDEEENDEPPKVVVTEVKEDDAFYSKKCKLFYKK-----ENEFKEKGVG 376
Query: 104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNSIVAIFHTXX 160
L +K T K +LVR D +G +LLN L+ P + T + KN+++ +
Sbjct: 377 TLHLK-------PTANQKTQLLVRADTNLGNILLNILIVPSMPCTRMGKNNVLIVCVPNP 429
Query: 161 XXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
T LIR KT ED ++L + E
Sbjct: 430 PVDEKNAATPV---TMLIRVKTSEDADELHKILLE 461
>UNIPROTKB|B4E2D3 [details] [associations]
symbol:NUP50 "cDNA FLJ54237, highly similar to Nucleoporin
50 kDa" species:9606 "Homo sapiens" [GO:0046907 "intracellular
transport" evidence=IEA] InterPro:IPR000156 Pfam:PF00638
PROSITE:PS50196 SMART:SM00160 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 GO:GO:0046907 EMBL:AL008718 EMBL:Z82243
UniGene:Hs.731619 HGNC:HGNC:8065 ChiTaRS:NUP50 EMBL:AK304223
IPI:IPI01010588 SMR:B4E2D3 STRING:B4E2D3 Ensembl:ENST00000425733
UCSC:uc011aqn.2 HOVERGEN:HBG104145 Uniprot:B4E2D3
Length = 218
Score = 112 (44.5 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 43/155 (27%), Positives = 66/155 (42%)
Query: 44 QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
Q D + G DE P + +E + + KCKL+ K D + +K++G G
Sbjct: 75 QAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKK----DNE-FKEKGIG 129
Query: 104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNSIVAIFHTXX 160
L +K T K +LVR D +G +LLN L+ P + T KN+++ +
Sbjct: 130 TLHLK-------PTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNP 182
Query: 161 XXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
T LIR KT ED ++L + E
Sbjct: 183 PIDEKNATMPV---TMLIRVKTSEDADELHKILLE 214
>UNIPROTKB|Q5F473 [details] [associations]
symbol:NUP50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005643 "nuclear pore" evidence=IEA] [GO:0046907
"intracellular transport" evidence=IEA] InterPro:IPR000156
InterPro:IPR015007 Pfam:PF00638 Pfam:PF08911 PROSITE:PS50196
SMART:SM00160 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0005643
GO:GO:0046907 CTD:10762 eggNOG:NOG255247 HOVERGEN:HBG052697
KO:K14295 OMA:ECKGGDE OrthoDB:EOG4VX25D HOGENOM:HOG000007919
GeneTree:ENSGT00440000035348 EMBL:AADN02006731 EMBL:AJ851427
IPI:IPI00601091 RefSeq:NP_001012559.1 UniGene:Gga.16654 SMR:Q5F473
STRING:Q5F473 Ensembl:ENSGALT00000022998 GeneID:418240
KEGG:gga:418240 InParanoid:Q5F473 NextBio:20821439 Uniprot:Q5F473
Length = 468
Score = 112 (44.5 bits), Expect = 0.00031, P = 0.00031
Identities = 47/174 (27%), Positives = 80/174 (45%)
Query: 25 DMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKL 84
D +A+S+ N S + +D GE+E +P P + +E + + KCKL
Sbjct: 308 DANQAKSATAVSTNALEAQTESGNNDDKGGEEEEEEP--PKVIVNEIKEDDAFYSKKCKL 365
Query: 85 YVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPG 142
+ K D + +K++G G L +K G ++++ +LVR D +G +LLN L+ P
Sbjct: 366 FYKK----DNE-FKEKGVGTLHLK-----PAGNEKTQ--LLVRADTNLGNILLNVLIPPK 413
Query: 143 IK-TNLQKNSIVAIFHTXXXXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
+ T KN+++ + T LIR KT ED ++L + E
Sbjct: 414 MPCTRTGKNNVLIVCVPNPPIDENNPTVPV---TMLIRVKTSEDADELHKILLE 464
>UNIPROTKB|Q9UKX7 [details] [associations]
symbol:NUP50 "Nuclear pore complex protein Nup50"
species:9606 "Homo sapiens" [GO:0046907 "intracellular transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005643 "nuclear
pore" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031965 "nuclear membrane" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005975 "carbohydrate metabolic
process" evidence=TAS] [GO:0008645 "hexose transport" evidence=TAS]
[GO:0010827 "regulation of glucose transport" evidence=TAS]
[GO:0015758 "glucose transport" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019221 "cytokine-mediated
signaling pathway" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0055085 "transmembrane
transport" evidence=TAS] Reactome:REACT_111217 Reactome:REACT_15518
InterPro:IPR000156 InterPro:IPR015007 Pfam:PF00638 Pfam:PF08911
PROSITE:PS50196 SMART:SM00160 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0005654 GO:GO:0016032 GO:GO:0044281
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0015031 GO:GO:0005975
GO:GO:0031965 EMBL:CH471138 GO:GO:0005643 GO:GO:0019221
GO:GO:0015758 GO:GO:0010827 GO:GO:0055085 GO:GO:0046907
GO:GO:0051028 EMBL:AL008718 PDB:3TJ3 PDBsum:3TJ3 EMBL:AF107840
EMBL:AF116624 EMBL:CR456533 EMBL:AK314454 EMBL:Z82243 EMBL:BC016055
EMBL:BC028125 EMBL:BC070133 EMBL:AL389949 EMBL:AL389950
IPI:IPI00026940 IPI:IPI00170581 RefSeq:NP_009103.2
RefSeq:NP_705931.1 UniGene:Hs.731619 PDB:2EC1 PDBsum:2EC1
ProteinModelPortal:Q9UKX7 SMR:Q9UKX7 IntAct:Q9UKX7 STRING:Q9UKX7
PhosphoSite:Q9UKX7 DMDM:20455193 PaxDb:Q9UKX7 PRIDE:Q9UKX7
DNASU:10762 Ensembl:ENST00000347635 Ensembl:ENST00000396096
Ensembl:ENST00000407019 Ensembl:ENST00000424634 GeneID:10762
KEGG:hsa:10762 UCSC:uc003bfr.3 CTD:10762 GeneCards:GC22P045559
HGNC:HGNC:8065 HPA:HPA047162 MIM:604646 neXtProt:NX_Q9UKX7
PharmGKB:PA31852 eggNOG:NOG255247 HOVERGEN:HBG052697
InParanoid:Q9UKX7 KO:K14295 OMA:ECKGGDE OrthoDB:EOG4VX25D
PhylomeDB:Q9UKX7 ChiTaRS:NUP50 EvolutionaryTrace:Q9UKX7
GenomeRNAi:10762 NextBio:40867 PMAP-CutDB:Q9UKX7
ArrayExpress:Q9UKX7 Bgee:Q9UKX7 CleanEx:HS_NUP50
Genevestigator:Q9UKX7 GermOnline:ENSG00000093000 Uniprot:Q9UKX7
Length = 468
Score = 112 (44.5 bits), Expect = 0.00031, P = 0.00031
Identities = 43/155 (27%), Positives = 66/155 (42%)
Query: 44 QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
Q D + G DE P + +E + + KCKL+ K D + +K++G G
Sbjct: 325 QAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKK----DNE-FKEKGIG 379
Query: 104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNSIVAIFHTXX 160
L +K T K +LVR D +G +LLN L+ P + T KN+++ +
Sbjct: 380 TLHLK-------PTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNP 432
Query: 161 XXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
T LIR KT ED ++L + E
Sbjct: 433 PIDEKNATMPV---TMLIRVKTSEDADELHKILLE 464
>POMBASE|SPBC365.13c [details] [associations]
symbol:hba1 "Ran GTPase binding protein Hba1"
species:4896 "Schizosaccharomyces pombe" [GO:0000056 "ribosomal
small subunit export from nucleus" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0008536 "Ran GTPase binding" evidence=ISS] [GO:0034599
"cellular response to oxidative stress" evidence=IGI] [GO:0046827
"positive regulation of protein export from nucleus" evidence=IMP]
[GO:0071238 "cellular response to brefeldin A" evidence=IMP]
[GO:0071313 "cellular response to caffeine" evidence=IMP]
[GO:1901181 "negative regulation of cellular response to caffeine"
evidence=IMP] InterPro:IPR000156 Pfam:PF00638 PROSITE:PS50196
SMART:SM00160 PomBase:SPBC365.13c GO:GO:0046827 GO:GO:0005654
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0034599 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0071313 GO:GO:0000056 EMBL:U38783
EMBL:AB027850 PIR:T40320 RefSeq:NP_596042.1
ProteinModelPortal:Q09146 EnsemblFungi:SPBC365.13c.1 GeneID:2540948
KEGG:spo:SPBC365.13c eggNOG:KOG0864 KO:K15304 OMA:ESAREYE
OrthoDB:EOG40VZZ8 NextBio:20802063 GO:GO:0071238 GO:GO:1901181
Uniprot:Q09146
Length = 399
Score = 109 (43.4 bits), Expect = 0.00058, P = 0.00058
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 15 QQQSMTTEPLDMQRAESSRQHVRNQS-SLLQNSNDLNDAD-GEDEVPQPSSPSLKKSE-- 70
+ ++E D A +S + NQ S + ++ +AD G + + + L SE
Sbjct: 210 ENDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDSTKSTMHQLSDSEII 269
Query: 71 --ERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRN 128
E + V+ +LYV + + K TWK+RG G L + + +G+ + +L+RN
Sbjct: 270 TGEEEEESIFSVRARLYVVADE---KKTWKERGQGILKVNVPK--QRGSGSGR--LLMRN 322
Query: 129 D-VGRVLLNALLYPGI-KTNLQ 148
D V RV++N L+ G+ K +LQ
Sbjct: 323 DAVHRVIMNVPLFQGMSKKSLQ 344
>ZFIN|ZDB-GENE-030131-1689 [details] [associations]
symbol:nup50 "nucleoporin 50" species:7955 "Danio
rerio" [GO:0046907 "intracellular transport" evidence=IEA]
[GO:0005643 "nuclear pore" evidence=IEA] InterPro:IPR000156
InterPro:IPR015007 Pfam:PF00638 Pfam:PF08911 PROSITE:PS50196
SMART:SM00160 ZFIN:ZDB-GENE-030131-1689 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0005643 GO:GO:0046907
GeneTree:ENSGT00440000035348 EMBL:CU694375 EMBL:FP067450
IPI:IPI00497833 Ensembl:ENSDART00000004739 ArrayExpress:F1R0E4
Bgee:F1R0E4 Uniprot:F1R0E4
Length = 422
Score = 109 (43.4 bits), Expect = 0.00063, P = 0.00063
Identities = 48/166 (28%), Positives = 79/166 (47%)
Query: 36 VRNQSSLLQNSNDLN---DADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPA 92
V + SS + NS+ + D +GED +P P +K+ +E+ + KCKL+ K
Sbjct: 272 VSSVSSPVVNSDSNSQTADENGEDS-EEPPVPVVKEIKEKDAF--YSKKCKLFYKK---- 324
Query: 93 DKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQK 149
D + +K++G G L +K T ESK +LVR D +G +LLN ++ + + K
Sbjct: 325 DGE-FKEKGVGTLHLKM-------TTESKLQLLVRADTNLGNILLNIMVPSSMPCSRTGK 376
Query: 150 NSIVAIFHTXXXXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
N+++ + LIR KT ED ++L +QE
Sbjct: 377 NNVMVVCVPNPPVDDKNPSVPV---PVLIRVKTAEDADQLHRVLQE 419
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.127 0.349 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 200 185 0.00080 110 3 11 23 0.39 33
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 583 (62 KB)
Total size of DFA: 147 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.36u 0.10s 20.46t Elapsed: 00:00:01
Total cpu time: 20.36u 0.10s 20.46t Elapsed: 00:00:01
Start: Mon May 20 20:51:25 2013 End: Mon May 20 20:51:26 2013