BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028997
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UKX7|NUP50_HUMAN Nuclear pore complex protein Nup50 OS=Homo sapiens GN=NUP50 PE=1
SV=2
Length = 468
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 22/157 (14%)
Query: 44 QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
Q D + G DE P + +E + + KCKL+ K + +K++G G
Sbjct: 325 QAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKD-----NEFKEKGIG 379
Query: 104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNS--IVAIFHT 158
L + K T K +LVR D +G +LLN L+ P + T KN+ IV + +
Sbjct: 380 TLHL-------KPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNP 432
Query: 159 SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE 195
D+ + T LIR KT ED ++L + E
Sbjct: 433 PIDE-----KNATMPVTMLIRVKTSEDADELHKILLE 464
>sp|O08587|NUP50_RAT Nuclear pore complex protein Nup50 OS=Rattus norvegicus GN=Nup50
PE=2 SV=2
Length = 467
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 41/151 (27%)
Query: 53 DGEDEVPQPSSPSLKKSEERGIIVVHEVK---------CKLYVKSSDPADKDTWKDRGTG 103
DGE+E +S+E +VV EVK CKL+ K + +K++G G
Sbjct: 334 DGEEE----------ESDEPPKVVVTEVKEEDAFYSKKCKLFYKKDN-----EFKEKGVG 378
Query: 104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNS--IVAIFHT 158
L +K T K +LVR D +G +LLN L+ P + T KN+ IV + +
Sbjct: 379 TLHLK-------PTATQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNP 431
Query: 159 SGDDAGGGNNGSAAARTFLIRTKTEEDRNKL 189
D+ T LIR KT ED ++L
Sbjct: 432 PLDE-----KQPTLPVTMLIRVKTSEDADEL 457
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hba1 PE=1 SV=1
Length = 399
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 77 VHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLL 135
+ V+ +LYV + + K TWK+RG G L + + G+ +L+RND V RV++
Sbjct: 278 IFSVRARLYVVADE---KKTWKERGQGILKVNVPKQRGSGSGR----LLMRNDAVHRVIM 330
Query: 136 NALLYPGI-KTNLQ 148
N L+ G+ K +LQ
Sbjct: 331 NVPLFQGMSKKSLQ 344
>sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50 OS=Mus musculus GN=Nup50 PE=1
SV=3
Length = 466
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 41/157 (26%)
Query: 53 DGEDEVPQPSSPSLKKSEERGIIVVHEVK---------CKLYVKSSDPADKDTWKDRGTG 103
DGE+E +++E +VV EVK CKL+ K + +K++G G
Sbjct: 333 DGEEE----------ENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDN-----EFKEKGVG 377
Query: 104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNS--IVAIFHT 158
L +K T K +LVR D +G +LLN L+ P + T KN+ IV + +
Sbjct: 378 TLHLK-------PTATQKTQLLVRADTNLGNILLNVLIAPNMPCTRTGKNNVLIVCVPNP 430
Query: 159 SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE 195
D+ T LIR KT ED ++L + E
Sbjct: 431 PLDE-----KQPTLPATMLIRVKTSEDADELHKILLE 462
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1
SV=1
Length = 201
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 76 VVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVL 134
V+++V+ KL+ AD WK+RGTG CK K K +K IL+R D ++
Sbjct: 85 VLYKVRAKLFRFD---ADAKEWKERGTGD----CK--FLKNKKTNKVRILMRRDKTLKIC 135
Query: 135 LNALLYP--GIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATA 192
N ++ P +K N+ + ++ + D A G A A TF IR ++E+ +K
Sbjct: 136 ANHIIAPEYTLKPNVGSDR-SWVYACTADIA----EGEAEAFTFAIRFGSKENADKFKEE 190
Query: 193 IQ 194
+
Sbjct: 191 FE 192
>sp|Q86L04|TRAP1_DICDI TNF receptor-associated protein 1 homolog, mitochondrial
OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1
Length = 711
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 82 CKLYVKSSDPADKDT-WKDRGTGQLSIKCKEGISKGTK 118
K+Y KS+ P K W+ GTG SI EG+S+GTK
Sbjct: 231 IKIYTKSATPGSKGYLWESDGTGSYSITEAEGVSRGTK 268
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2
Length = 491
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 77 VHEVKCKLYV--KSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVL 134
V +++CKL+V K+S +W +RG G L + GT +S+ + + + R++
Sbjct: 325 VLQIQCKLFVFDKTSQ-----SWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSL-RLI 378
Query: 135 LNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQ 194
LN L+ ++ + + I T +D G + FLI + + +D +L A+
Sbjct: 379 LNTKLWAQMQMDKASEKSIRITATDAEDQG--------VKVFLI-SASSKDTGQLYAALH 429
>sp|Q6PDH4|RNB3L_MOUSE Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=2 SV=1
Length = 491
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 77 VHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVG-RVLL 135
V ++ CK++V + ++W +RG G L + G GT +S+ +++RN R++L
Sbjct: 324 VLKINCKIFVFNKA---TESWSERGQGILRLNDTAGRECGTLQSR--LIMRNQGSLRLVL 378
Query: 136 NALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAI 193
N+ L+ +K + I T +D G + FLI+ + +D L AI
Sbjct: 379 NSRLWAQMKIQRASQKNLRITATDLEDDG--------IKIFLIQA-SAKDTGFLYAAI 427
>sp|B1W1R5|ECTC_STRGG L-ectoine synthase OS=Streptomyces griseus subsp. griseus (strain
JCM 4626 / NBRC 13350) GN=ectC PE=3 SV=1
Length = 132
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 114 SKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQ-KNSIVAIFHTSGD 161
+ GT ESK +L + VG L +LY G +T++ N I A+ T G+
Sbjct: 19 ASGTWESKRIVLAKEKVGFSLHETVLYAGTETSMWYANHIEAVLCTEGE 67
>sp|Q6QUY8|ECTC_STRAQ L-ectoine synthase OS=Streptomyces anulatus GN=ectC PE=3 SV=1
Length = 132
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 114 SKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQ-KNSIVAIFHTSGD 161
+ GT ESK +L + VG L +LY G +T++ N I A+ T G+
Sbjct: 19 ASGTWESKRIVLAKEKVGFSLHETVLYAGTETSMWYANHIEAVLCTEGE 67
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1
Length = 499
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 77 VHEVKCKLYV--KSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVL 134
V +++CKL+V K+S +W +RG G L + GT +S+ + + + R++
Sbjct: 333 VLQMQCKLFVFDKTSQ-----SWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSL-RLI 386
Query: 135 LNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAI 193
LN L+ ++ + + I +D G + FLI + + +D +L A+
Sbjct: 387 LNTKLWAQMQIDKASEKSIRITAMDTEDQG--------VKVFLI-SASSKDTGQLYAAL 436
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1
Length = 567
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 77 VHEVKCKLYV--KSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVL 134
V +++CKL+V K+S +W +RG G L + GT +S+ + + + R++
Sbjct: 401 VLQMQCKLFVFDKTSQ-----SWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSL-RLI 454
Query: 135 LNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQ 194
LN L+ ++ + + I +D G + FLI + + +D +L A+
Sbjct: 455 LNTKLWAQMQIDKASEKSIRITAMDTEDQG--------VKVFLI-SASSKDTGQLYAALH 505
>sp|O34722|YFMG_BACSU Uncharacterized protein YfmG OS=Bacillus subtilis (strain 168)
GN=yfmG PE=4 SV=1
Length = 487
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 17 QSMTTEPLDMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIV 76
Q + + LD+ E + V ++ QN N+ D E+++PQ +K+EE G+I+
Sbjct: 148 QKVLSTLLDIFGVEKHEELVMLKNYFDQNGILPNNFDFEEKIPQSLIEEFEKTEEDGMIL 207
Query: 77 VHEVKCKLYVKSSDPADKD-TWKD 99
+ + + ++ DK WKD
Sbjct: 208 IPGGFFEFGLNENEIPDKTFNWKD 231
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 23/156 (14%)
Query: 51 DADGEDE----------VPQPSSPSLK-KSEERGIIVVHEVKCKLYVKSSDPADKDTWKD 99
D DG DE P S P ++ KS E V+ + + KLY D + WK+
Sbjct: 2725 DEDGSDEDVVHNEDIHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQ---WKE 2781
Query: 100 RGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTS 159
RG G + I + K+ ++ R+ V +V N ++ ++ S A+ T+
Sbjct: 2782 RGIGDIKI-----LWHTMKKYYRILMRRDQVFKVCANHVITKAMELKPLNVSNNALVWTA 2836
Query: 160 GDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE 195
D A +G A +R KT+E +E
Sbjct: 2837 SDYA----DGEAKVEQLAVRFKTKEMTESFKKKFEE 2868
>sp|O14220|MEU26_SCHPO Meiotic expression up-regulated protein 26 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=meu26 PE=2 SV=1
Length = 344
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 1 MEGSLFDV-HRAEPSQQQSMTTEPL-DMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEV 58
++G + ++ H + S EPL D+Q S+ H N+ + N N NDA E+E
Sbjct: 91 LDGPIININHVNQTSPYTHHNAEPLHDLQTFSSNLNHSNNRRQTICNFNMANDASKENET 150
Query: 59 P 59
P
Sbjct: 151 P 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,126,416
Number of Sequences: 539616
Number of extensions: 3051707
Number of successful extensions: 7750
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 7737
Number of HSP's gapped (non-prelim): 61
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)