Query 028997
Match_columns 200
No_of_seqs 129 out of 576
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00835 RanBD Ran-binding doma 100.0 3.5E-33 7.6E-38 217.9 15.2 116 67-198 3-122 (122)
2 smart00160 RanBD Ran-binding d 100.0 3.9E-32 8.5E-37 215.1 14.6 118 66-196 11-130 (130)
3 PF00638 Ran_BP1: RanBP1 domai 100.0 7.1E-32 1.5E-36 209.3 12.8 115 68-196 3-119 (122)
4 COG5171 YRB1 Ran GTPase-activa 99.9 1.7E-25 3.6E-30 184.6 7.5 113 68-195 83-199 (211)
5 KOG2724 Nuclear pore complex c 99.9 3.3E-25 7.2E-30 202.4 8.1 128 49-198 357-487 (487)
6 KOG0864 Ran-binding protein RA 99.5 6.3E-16 1.4E-20 132.0 0.2 116 66-196 48-170 (215)
7 cd00837 EVH1 EVH1 (Enabled, Va 99.2 1.1E-09 2.5E-14 83.5 13.2 100 74-196 1-103 (104)
8 KOG0866 Ran-binding protein RA 98.7 8.8E-09 1.9E-13 92.4 2.2 111 69-194 151-263 (327)
9 PF00568 WH1: WH1 domain; Int 98.5 3E-06 6.6E-11 65.1 13.2 100 75-196 9-110 (111)
10 cd01207 Ena-Vasp Enabled-VASP- 98.3 1.4E-05 3E-10 62.3 11.2 101 74-197 1-107 (111)
11 cd01206 Homer Homer type EVH1 98.0 5.6E-05 1.2E-09 58.8 9.1 103 74-197 3-107 (111)
12 smart00461 WH1 WASP homology r 97.6 0.0017 3.8E-08 49.6 12.1 102 74-196 3-105 (106)
13 PF08553 VID27: VID27 cytoplas 96.4 0.13 2.8E-06 52.0 15.4 105 72-196 245-351 (794)
14 cd01205 WASP WASP-type EVH1 do 94.3 1.9 4.1E-05 33.4 12.1 100 75-196 5-104 (105)
15 KOG2724 Nuclear pore complex c 94.1 0.11 2.3E-06 49.1 5.7 81 46-127 331-413 (487)
16 KOG3671 Actin regulatory prote 92.0 0.29 6.2E-06 47.1 5.3 81 95-196 55-138 (569)
17 PF06058 DCP1: Dcp1-like decap 90.2 6.2 0.00013 31.0 10.5 92 80-196 27-121 (122)
18 KOG4590 Signal transduction pr 78.2 2.7 5.9E-05 39.6 4.0 82 95-196 8-96 (409)
19 PF15411 PH_10: Pleckstrin hom 57.5 24 0.00053 27.4 4.8 21 172-192 95-115 (116)
20 PF07576 BRAP2: BRCA1-associat 47.1 21 0.00045 27.6 2.9 22 174-195 55-76 (110)
21 KOG0866 Ran-binding protein RA 35.7 13 0.00027 34.2 0.1 54 74-136 242-296 (327)
22 COG4871 Uncharacterized protei 34.5 1.2E+02 0.0026 25.6 5.6 33 119-151 31-66 (193)
23 COG5167 VID27 Protein involved 33.6 1.2E+02 0.0027 30.2 6.4 66 119-193 262-328 (776)
24 PHA02991 HT motif gene family 27.1 24 0.00051 28.0 0.3 16 96-111 13-28 (120)
25 PF14242 DUF4342: Domain of un 23.1 79 0.0017 23.3 2.4 23 120-143 30-52 (84)
26 PF08777 RRM_3: RNA binding mo 22.5 86 0.0019 23.7 2.6 23 174-196 38-60 (105)
27 cd01251 PH_centaurin_alpha Cen 21.2 3.4E+02 0.0075 19.9 6.0 24 174-197 77-100 (103)
28 cd07881 RHD-n_NFAT N-terminal 21.2 76 0.0016 26.5 2.2 11 119-129 142-152 (175)
No 1
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=3.5e-33 Score=217.86 Aligned_cols=116 Identities=34% Similarity=0.436 Sum_probs=96.8
Q ss_pred cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997 67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT 145 (200)
Q Consensus 67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~ 145 (200)
..+|||+|++||+.|||||++.++ +++|+|||+|+||||+++. ++++|||||+| +||||||+.|+++|++
T Consensus 3 v~tGEE~E~~if~~r~KLy~~~~~---~~~WkerG~G~lki~~~k~------~~~~RivmR~d~~~kv~lN~~i~~~~~~ 73 (122)
T cd00835 3 VKTGEEDEEVIFSVRAKLYRFDDE---TKEWKERGVGELKILKHKD------TGKYRLLMRRDQVLKLCLNHKLVPGMKL 73 (122)
T ss_pred cccCCcCcEEEEEEEeEEEEEcCC---CCCCeeceEEEEEEEEcCC------CCcEEEEEEeCCccEEEEeeEecCCcEE
Confidence 458999999999999999977553 3589999999999999973 57999999999 9999999999999999
Q ss_pred eecC---CcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhCC
Q 028997 146 NLQK---NSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAP 198 (200)
Q Consensus 146 ~~~k---~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~p 198 (200)
+..+ ++++|. ..+..++++ ++++|+|||+++++|++|.++|+++.+
T Consensus 74 ~~~~~~~k~~~~~--~~d~~~~~~-----~~~~~~lrfk~~~~a~~f~~~~~~~~~ 122 (122)
T cd00835 74 QPMGNSDKSIVWA--AMDFSDDEP-----KPETFAIRFKTEEIADEFKEAIEEAKK 122 (122)
T ss_pred eecCCCCcEEEEE--eeecCCCCC-----cEEEEEEEECCHHHHHHHHHHHHHhhC
Confidence 9843 555443 334322222 789999999999999999999998754
No 2
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=3.9e-32 Score=215.09 Aligned_cols=118 Identities=24% Similarity=0.326 Sum_probs=94.7
Q ss_pred ccccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCce
Q 028997 66 LKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIK 144 (200)
Q Consensus 66 ~~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~ 144 (200)
...+|||+|++||+.|||||.+.+. ++.|+|||+|+||||+++. + .+++|||||+| +||||||+.|+++|+
T Consensus 11 e~~tgEE~E~~lf~~r~KL~~~~~~---~~~WkerG~G~lki~~~~~----~-~~~~RivmR~~~~~kv~lN~~i~~~~~ 82 (130)
T smart00160 11 EVKTGEEDEEVIFSARAKLYRFAND---KKEWKERGVGDLKILKSKD----N-GGKVRIVMRRDGVLKVCANHPIFKSMT 82 (130)
T ss_pred cccCCCcCeEEEEEEEeEEEEEcCC---CCCCeeccEEEEEEEEcCC----C-CCeEEEEEEECCCceEEeccEecCCcE
Confidence 4468999999999999999965432 2589999999999999974 2 17999999999 999999999999999
Q ss_pred eeecCCc-EEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 145 TNLQKNS-IVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 145 ~~~~k~~-v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
++..+++ -.++|...+..+++ .++++|+|||+++++|++|+++|+++
T Consensus 83 ~~~~~~~~~~~~~~~~d~~d~~-----~~~~~~~irfk~~e~a~~f~~~~~ea 130 (130)
T smart00160 83 LKPLAGSNRALKWTPEDFADDI-----PKLVLYAVRFKTKEEADSFKNIFEEA 130 (130)
T ss_pred EeecCCCcceEEEeeeecCCCC-----CceEEEEEEeCCHHHHHHHHHHHHhC
Confidence 9973332 12445433432222 27899999999999999999999874
No 3
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=99.98 E-value=7.1e-32 Score=209.27 Aligned_cols=115 Identities=30% Similarity=0.507 Sum_probs=88.3
Q ss_pred ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997 68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN 146 (200)
Q Consensus 68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~ 146 (200)
.+|||+|++||+.|||||.+... .+.|++||+|+|||++++. ++++|||||+| +||||||+.|+++|+++
T Consensus 3 ~tgEE~E~~l~~~r~Kl~~~~~~---~~~W~erG~G~l~i~~~k~------~~~~RlvmR~d~~~kv~lN~~i~~~m~~~ 73 (122)
T PF00638_consen 3 KTGEEDEEILFEVRAKLYRFDKE---DKEWKERGVGTLKILKHKE------TGKYRLVMRRDGTGKVLLNHPIFKGMKLK 73 (122)
T ss_dssp CHSSSSEEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEETT------SCEEEEEEEETTTTEEEEEEE--TTC-EE
T ss_pred cccccCcEEEEEEEEEEEEEeCC---CCCccccceeEEEEEEccC------CcceEEEEEEcccCceeEEEEecCCceec
Confidence 57999999999999999965432 1599999999999999974 57999999999 99999999999999998
Q ss_pred e-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 147 L-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 147 ~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
. .++...++|...+..++++ ++++|+|||+++++|++|+++|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~irf~~~e~a~~f~~~i~e~ 119 (122)
T PF00638_consen 74 PMKGSEKSLVWTAIDYADEEG-----KPETYLIRFKSAEDADEFKKKIEEA 119 (122)
T ss_dssp ESTTTTTEEEEEEEECTTSSS-----EEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEEeccccCCCC-----ceEEEEEEECCHHHHHHHHHHHHHH
Confidence 6 2221113332222222222 7899999999999999999999986
No 4
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=99.92 E-value=1.7e-25 Score=184.61 Aligned_cols=113 Identities=24% Similarity=0.419 Sum_probs=93.7
Q ss_pred ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997 68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN 146 (200)
Q Consensus 68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~ 146 (200)
++-||||+++|.+|||||+|... .+.|+|||.|.++|++|+. ++++||+||+| ++|||+||.|.|.|+++
T Consensus 83 ktneedE~vlfK~RaKLfrFd~~---akewkERgtGd~~~lkhkk------tnk~ri~MrRDktlklcaNH~i~Pe~kl~ 153 (211)
T COG5171 83 KTNEEDETVLFKARAKLFRFDEE---AKEWKERGTGDMIILKHKK------TNKARITMRRDKTLKLCANHFINPEFKLQ 153 (211)
T ss_pred hccccchhhhhhhhhhheeehHH---HHHHHhcCCCcEEEEeccc------cCceEEEEeechhhhhhhhhccCcceecc
Confidence 47899999999999999977553 2699999999999999973 78999999999 99999999999999998
Q ss_pred e--cCCcEEEEEEc-cCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHH
Q 028997 147 L--QKNSIVAIFHT-SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE 195 (200)
Q Consensus 147 ~--~k~~v~~i~~~-~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e 195 (200)
+ +.++- |+|.. .| ..||++ +..+|+|||.+.++|+.|...++.
T Consensus 154 Pnvgsdrs-Wvw~~taD--~~Egea---~a~tFairF~s~Ena~~FkEefek 199 (211)
T COG5171 154 PNVGSDRS-WVWMSTAD--TVEGEA---KAQTFAIRFYSEENAKRFKEEFEK 199 (211)
T ss_pred CCCCcccc-eEEEeecc--cccCcc---eeeEEEEeeccHHHHHHHHHHHHH
Confidence 7 33333 45443 33 245533 689999999999999999988764
No 5
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-25 Score=202.40 Aligned_cols=128 Identities=32% Similarity=0.492 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEc
Q 028997 49 LNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRN 128 (200)
Q Consensus 49 ~~d~d~e~e~~eP~~p~~~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~ 128 (200)
+.-+++|.+++.|+++++.+.-|+|. +|+.|||+||+++ ++++++|||+|||+... .++..||+|+
T Consensus 357 e~kgedeeeEd~ppkve~~ev~edda--~ysKkckvfykKd-----KEf~dkGvgtl~lkp~~-------~~k~qlLvra 422 (487)
T KOG2724|consen 357 EGKGEDEEEEDVPPKVETVEVQEDDA--VYSKKCKVFYKKD-----KEFTDKGVGTLHLKPND-------RGKFQLLVRA 422 (487)
T ss_pred cCCCCcccccccCCeeEeecccCccc--hhccccceEEEec-----ccccccccceeeccccc-------ccceeeeehh
Confidence 44557788889999999999888887 9999999999987 59999999999999964 4689999999
Q ss_pred c--ccceeeceeeCCCceeee-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhCC
Q 028997 129 D--VGRVLLNALLYPGIKTNL-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAP 198 (200)
Q Consensus 129 D--~gkVlLN~~L~~~m~~~~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~p 198 (200)
| +|+||||.+|+++|+|++ ++|+| +|+|++.. ++. .++++||||||++.|++|.++|+|+++
T Consensus 423 dtnlGnilLN~Ll~kgMkctr~gknnv-lIvcvp~~-----e~t--~p~TmLIRvktad~aD~L~~kI~E~a~ 487 (487)
T KOG2724|consen 423 DTNLGNILLNSLLNKGMKCTRVGKNNV-LIVCVPPS-----EST--EPATMLIRVKTADGADKLTDKILEVAV 487 (487)
T ss_pred ccchhHHHHHHhhcCCCcceeccCCce-EEEEeCCc-----ccc--cceeEEEEecccchHHHHHHHHHhhcC
Confidence 9 999999999999999998 66777 78887742 222 789999999999999999999999986
No 6
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=6.3e-16 Score=132.02 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=90.2
Q ss_pred ccccCCCCceeEEEEce-eEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-c-cceeeceeeCCC
Q 028997 66 LKKSEERGIIVVHEVKC-KLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-V-GRVLLNALLYPG 142 (200)
Q Consensus 66 ~~~~GEEdE~~vf~~Ra-KLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~-gkVlLN~~L~~~ 142 (200)
...++++++..+|..|+ +||++... .+.|++||+|.++|++|++ ++..|++||+| + ++||.|++|++.
T Consensus 48 ~v~t~e~~e~~~~~~~s~~l~~f~~~---~kq~kerG~g~~~~~kn~~------~g~~r~~m~rdst~~~v~sn~~~~~~ 118 (215)
T KOG0864|consen 48 EVKTGEEDEEIIFDQRSEKLYVFDNE---TKQWKERGTGKVKLLKNKD------TGSTRDLMRRDSTKLKVCSNHFIGPS 118 (215)
T ss_pred hhhccchhhhhhhhhhhhhHHhhhhh---hhhhhccCCcceEeeecCC------CCcceeeeeecccchhhcccccccCc
Confidence 34689999999999996 99976543 3699999999999999984 67899999999 8 899999999999
Q ss_pred ceeee--cCCcEEEEE-EccCCCCCCCCCCCCcceEEEEEcCCHHH-HHHHHHHHHHh
Q 028997 143 IKTNL--QKNSIVAIF-HTSGDDAGGGNNGSAAARTFLIRTKTEED-RNKLATAIQEY 196 (200)
Q Consensus 143 m~~~~--~k~~v~~i~-~~~~~~~~e~~~~~~~~~~~liR~kt~e~-A~eL~~~i~e~ 196 (200)
|++++ ..+.- +.+ +..+.... .+...+|+|||++.+. ..-|...|++.
T Consensus 119 ~~~~p~~~~~~~-~~~~~~~d~~~~-----~~~~~~~~i~~~~~e~s~~~f~~~~e~~ 170 (215)
T KOG0864|consen 119 FKLEPPAWEEDS-GKWNSLADFSET-----QPKAEKLAIRFAKVESSGKAFKEKIEEA 170 (215)
T ss_pred ccccCCcccCcc-hhhhhhhhhccc-----ccchhHHHHHhhhhcccchhhHhhhhhh
Confidence 99986 22221 233 23333211 3367899999999988 77777777654
No 7
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.16 E-value=1.1e-09 Score=83.49 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=81.1
Q ss_pred ceeEEEEceeEEEecCCCCCCCCCccc--ceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecCC
Q 028997 74 IIVVHEVKCKLYVKSSDPADKDTWKDR--GTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKN 150 (200)
Q Consensus 74 E~~vf~~RaKLf~~~~~~~~~~~WkER--GvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~ 150 (200)
+.+|+..+|+||...++ +++|..+ |+|.|.|.++.. .+.+||+|+.- .++|++|..|+++|.++....
T Consensus 1 ~~~l~~~~a~v~~~~~~---~~~W~~~~~~~g~v~~~~d~~------~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~ 71 (104)
T cd00837 1 EQIISTAVAQVYTADPS---TGKWVPASGGTGAVSLVKDST------RNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATP 71 (104)
T ss_pred CceEEEEEEEEEEECCC---CCceEECCCCeEEEEEEEECC------CCEEEEEEEecCCCeEEEEEEecCCcEEeecCC
Confidence 35799999999965443 3699999 999999999863 45799999999 999999999999999988555
Q ss_pred cEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 151 SIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 151 ~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
.. ..|. .+ -..|-|.|.++++|++|.+.+++.
T Consensus 72 ~F-h~w~-~~------------~~~~GL~F~se~eA~~F~~~v~~~ 103 (104)
T cd00837 72 FF-HQWE-DD------------NCVYGLNFASEEEAAQFRKKVLEA 103 (104)
T ss_pred eE-EEEE-cC------------CcEEEEeeCCHHHHHHHHHHHHhc
Confidence 33 2232 11 148999999999999999999864
No 8
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.8e-09 Score=92.41 Aligned_cols=111 Identities=20% Similarity=0.396 Sum_probs=80.2
Q ss_pred cCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997 69 SEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL 147 (200)
Q Consensus 69 ~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~ 147 (200)
+|||+|..+|.+.||||.+..- +..|.|||+|.||++.......++ -..|||||.- ++||+||..||..|....
T Consensus 151 tgee~e~n~~d~~ck~f~f~k~---~~sw~e~g~~~lr~n~~as~~~~~--~~~r~vfrt~~slrv~~n~kv~~~m~~ek 225 (327)
T KOG0866|consen 151 TGEEDESNKLDMPCKLFAFDKP---SQSWVERGRSNLRDNDMASTGDGT--TQSRLVFRTSSSLRVILNTKVWAAMQIEK 225 (327)
T ss_pred cCccCccceeccchhhhhcccc---chhhhhhccccccchhhhhccCCc--ccceeEEeccCcceeecchHHHHHHHHhh
Confidence 6999999999999999954321 247999999999999865322222 2589999999 999999999999999987
Q ss_pred -cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHH
Q 028997 148 -QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQ 194 (200)
Q Consensus 148 -~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~ 194 (200)
.+.+++ +.. .+. |+. ....|+++++. ..-+++++.+-
T Consensus 226 ~sq~~ir-~~a-~~~---e~~----~v~vFl~~~~~-~rtd~i~~s~~ 263 (327)
T KOG0866|consen 226 ASQKSIR-ITA-MDT---EGQ----GVKVFLISASS-KRTDQIYKSLS 263 (327)
T ss_pred hccccee-ecc-ccc---cCC----cceEEEeeccc-cchhhhhhhhh
Confidence 444453 321 221 121 23689999885 45566666543
No 9
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.55 E-value=3e-06 Score=65.09 Aligned_cols=100 Identities=19% Similarity=0.329 Sum_probs=79.0
Q ss_pred eeEEEEceeEEEecCCCCCCCCCcc-cceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecCCcE
Q 028997 75 IVVHEVKCKLYVKSSDPADKDTWKD-RGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSI 152 (200)
Q Consensus 75 ~~vf~~RaKLf~~~~~~~~~~~WkE-RGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~~v 152 (200)
.+|+..+|.||.-.++. +.+|.- .|.|.|.+.++. + ...+||+++.= .+++++|..|+++|.|+......
T Consensus 9 ~~i~~~vA~v~~~~p~~--~~~W~~~~~~g~v~~v~d~-----~-~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~F 80 (111)
T PF00568_consen 9 QSIATAVAQVYQADPDT--KRQWSPVKGTGVVCFVKDN-----S-RRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFF 80 (111)
T ss_dssp EEEEEEEEEEEEEETTT--SESEEESSSEEEEEEEEET-----T-TTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSE
T ss_pred eEEEEEEEEEEEEEcCC--CCcEeeCCeEEEEEEEEEC-----C-CCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcE
Confidence 68999999999543321 135999 999999999975 2 45789999886 99999999999999999866654
Q ss_pred EEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 153 VAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 153 ~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
-.|. .+ . ..|-|.|.++++|++|.+.|++.
T Consensus 81 -h~f~-~~-----------~-~~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 81 -HQFE-DD-----------D-CVYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp -EEEE-ET-----------T-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred -EEEE-eC-----------C-eEEEEecCCHHHHHHHHHHHhcc
Confidence 2233 22 1 39999999999999999999875
No 10
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.29 E-value=1.4e-05 Score=62.31 Aligned_cols=101 Identities=15% Similarity=0.254 Sum_probs=77.5
Q ss_pred ceeEEEEceeEEEecCCCCCCCCCccccee-----eEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997 74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTG-----QLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL 147 (200)
Q Consensus 74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG-----~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~ 147 (200)
|..|+.+||.+|...+. .+.|---|-| .+.|..+.. .+-+||+=|+- -+++++|..|+++|+|+.
T Consensus 1 e~~i~~~rA~Vm~~d~~---tk~W~P~~~~~~~ls~V~~~~~~~------~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k 71 (111)
T cd01207 1 EQSICQARASVMVYDDS---NKKWVPAGGGSQGFSRVQIYHHPR------NNTFRVVGRKLQDHQVVINCAIVKGLKYNQ 71 (111)
T ss_pred CCceEEEEEEeeEEcCC---CCcEEcCCCCCCCcceEEEEEcCC------CCEEEEEEeecCCCcEEEEEEecCCceeee
Confidence 46799999999954442 2579987764 677777652 45799999987 899999999999999988
Q ss_pred cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997 148 QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA 197 (200)
Q Consensus 148 ~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~ 197 (200)
...... -|. .+ -..|=|-|.++++|..|...|+..+
T Consensus 72 ~~p~Fh-~w~-~~------------~~v~GLnF~Se~eA~~F~~~v~~Al 107 (111)
T cd01207 72 ATPTFH-QWR-DA------------RQVYGLNFGSKEDATMFASAMLSAL 107 (111)
T ss_pred cCCcce-eee-cC------------CeEEeeccCCHHHHHHHHHHHHHHH
Confidence 555331 122 11 1699999999999999999998764
No 11
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.00 E-value=5.6e-05 Score=58.75 Aligned_cols=103 Identities=12% Similarity=0.233 Sum_probs=76.4
Q ss_pred ceeEEEEceeEEEecCCCCCCCCCcccceeeEEee--eecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCc
Q 028997 74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIK--CKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNS 151 (200)
Q Consensus 74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil--~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~ 151 (200)
|..||+.||.+|...+. .++.|.--|-+.++|. .+. + ..-+|||=|.+ .+||+|..|.++|+++....+
T Consensus 3 E~~I~~arA~V~~yd~~--tKk~WvPs~~~~~~V~~y~~~-----~-~ntfRIi~~~~-~~~iINc~i~~~~~y~kas~~ 73 (111)
T cd01206 3 EQPIFSTRAHVFQIDPK--TKKNWIPASKHAVTVSYFYDS-----T-RNVYRIISVGG-TKAIINSTITPNMTFTKTSQK 73 (111)
T ss_pred ccccceeeeEEEEECCC--CcceeEeCCCCceeEEEEecC-----C-CcEEEEEEecC-cEEEEeccccCCcceeecccc
Confidence 67799999999965442 2468998887755554 443 3 55799999876 489999999999999985543
Q ss_pred EEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997 152 IVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA 197 (200)
Q Consensus 152 v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~ 197 (200)
.-. | .|. . .-..|=|-|.++++|..|...|++..
T Consensus 74 FhQ-W--rD~----R-----~~tVyGLnF~Sk~ea~~F~~~f~~~~ 107 (111)
T cd01206 74 FGQ-W--ADS----R-----ANTVYGLGFSSEQQLTKFAEKFQEVK 107 (111)
T ss_pred ccc-c--ccc----c-----cceeeecccCCHHHHHHHHHHHHHHH
Confidence 311 1 121 0 12789999999999999999998864
No 12
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=97.63 E-value=0.0017 Score=49.64 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=72.0
Q ss_pred ceeEEEEceeEEEecCCCCCCCCCccccee-eEEeeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCcE
Q 028997 74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTG-QLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSI 152 (200)
Q Consensus 74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG-~Lkil~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~v 152 (200)
+.+++..++-++...+. .+.|.-.|.| .+.|.+... ....-.||+-+...-+|++|..|+++|+++......
T Consensus 3 ~~~~~~~~avV~~y~~~---~~~W~~~~~gg~~~~~~~~~----~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~F 75 (106)
T smart00461 3 SQCIILARAVVQLYDAD---TKKWVPTGEGGAANLVIDKN----QRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTF 75 (106)
T ss_pred CCCEEEEEEEEEEEeCC---CCCeEECCCCCEEEEEEEec----CCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCce
Confidence 34566677766633222 1469999999 788877542 124457888777622999999999999999866543
Q ss_pred EEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 153 VAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 153 ~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
. .|. .+ -..|=|-|.++++|++|.+.|.+.
T Consensus 76 h-~f~-~~------------~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 76 H-QWA-DD------------KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred E-EEE-eC------------CeEEEeecCCHHHHHHHHHHHHhc
Confidence 1 122 11 158999999999999999999864
No 13
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.41 E-value=0.13 Score=52.05 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=73.2
Q ss_pred CCceeEEEEceeEEEecCCCCCCCCCcccceee-EEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecC
Q 028997 72 RGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQ-LSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQK 149 (200)
Q Consensus 72 EdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~-Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k 149 (200)
+..+.++...|+||++... ...|.-.+-.. ++|.. .++.-..++-. ..+.+|++.|.+.|++...-
T Consensus 245 ~~~~~~~~~~~~L~l~d~~---~~~f~lq~~~v~~~i~~---------~~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~ 312 (794)
T PF08553_consen 245 EAGEILASESAELYLYDPP---TGKFVLQDSSVTAKIIE---------TGKWEYWLQIEGKDKIWLGQPVSSDMNPVFNF 312 (794)
T ss_pred CccceeeeeeEEEEEEcCC---CceEEEecCcEEEEEEE---------cCCeEEEEEEecCCceEEeeeccCCcCeEEEc
Confidence 4444899999999965332 24787665332 44544 33555556666 56778999999999998866
Q ss_pred CcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 150 NSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 150 ~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
....|+|..... + + ..-.|+|||++.++-.+|...+...
T Consensus 313 e~lSFiFN~~~~--~-~-----~~~sw~lkF~~~~~~~~F~~~~~~~ 351 (794)
T PF08553_consen 313 EHLSFIFNYYTE--D-G-----SAYSWLLKFKDQEDYERFQEKFMKC 351 (794)
T ss_pred ceeEEEEEeEcC--C-C-----ceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 666677775432 1 1 4579999999999999988877543
No 14
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=94.28 E-value=1.9 Score=33.37 Aligned_cols=100 Identities=11% Similarity=0.153 Sum_probs=71.0
Q ss_pred eeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCcEEE
Q 028997 75 IVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVA 154 (200)
Q Consensus 75 ~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~v~~ 154 (200)
.++...=++||+-.++ ...|.-...|.|-+-++.. .++--.||+=.. .++|+...-|+.+|.++......
T Consensus 5 ~il~~aVvqlY~a~p~---~~~W~~~~~Gvl~~vkD~~----~~sy~lrl~D~~-~~~v~weqElY~~f~y~~~r~fF-- 74 (105)
T cd01205 5 KILATAVVQLYKAYPD---PGRWTKTLTGAVCLVKDNV----QKSYFIRLFDIK-ANRIIWEQELYDNFEYQQPRPFF-- 74 (105)
T ss_pred eEEEEEEEEEEEecCC---CCeeEEEeEEEEEEEEECC----CCEEEEEEEEcc-CCcEEEEEEcccCcEEccCCCcE--
Confidence 3566667889965432 2489999999999998642 112234444333 58999999999999998865533
Q ss_pred EEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 155 IFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 155 i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
..+..+ -.++-|.|-+.++|.+|++++++.
T Consensus 75 htFe~d------------~c~~GL~Fade~EA~~F~k~v~~~ 104 (105)
T cd01205 75 HTFEGD------------DCVVGLNFADETEAAEFRKKVLDK 104 (105)
T ss_pred EEEecc------------CcEEEEEECCHHHHHHHHHHHHhc
Confidence 222122 158889999999999999999864
No 15
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=0.11 Score=49.08 Aligned_cols=81 Identities=19% Similarity=0.021 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCCCCC--CCcccccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceE
Q 028997 46 SNDLNDADGEDEVPQPS--SPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPT 123 (200)
Q Consensus 46 ~~~~~d~d~e~e~~eP~--~p~~~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~R 123 (200)
+...++.++-+...++. .+.....++.+|+...+..|++|++..+.++ ..|...+++.|++++++..++|+++....
T Consensus 331 tg~sd~asgf~~~~q~~~~~~~~ak~e~kgedeeeEd~ppkve~~ev~ed-da~ysKkckvfykKdKEf~dkGvgtl~lk 409 (487)
T KOG2724|consen 331 TGGSDLASGFAGLAQKAMENQNQAKPEGKGEDEEEEDVPPKVETVEVQED-DAVYSKKCKVFYKKDKEFTDKGVGTLHLK 409 (487)
T ss_pred CCCCCccCCCCcccccccccCCcccccCCCCcccccccCCeeEeecccCc-cchhccccceEEEecccccccccceeecc
Confidence 33455666666666655 3455555666777788899999965443333 58999999999999998777777777777
Q ss_pred EEEE
Q 028997 124 ILVR 127 (200)
Q Consensus 124 lvmR 127 (200)
++.|
T Consensus 410 p~~~ 413 (487)
T KOG2724|consen 410 PNDR 413 (487)
T ss_pred cccc
Confidence 8888
No 16
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=92.02 E-value=0.29 Score=47.14 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=58.4
Q ss_pred CCCcccce-eeEEeeeecCCCCCCCCCceEEEEEcc--ccceeeceeeCCCceeeecCCcEEEEEEccCCCCCCCCCCCC
Q 028997 95 DTWKDRGT-GQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSA 171 (200)
Q Consensus 95 ~~WkERGv-G~Lkil~~k~~~~~t~~~k~RlvmR~D--~gkVlLN~~L~~~m~~~~~k~~v~~i~~~~~~~~~e~~~~~~ 171 (200)
..|+-+|. |-|-|-++- ..|+-.|=--| .+|||-.+.||.+|.|...-. .|++... |+
T Consensus 55 ~~W~~~~~~Gal~lVkD~-------~~rsyFlrl~di~~~rliWdqELY~nf~y~q~r~----ffhtFeg--dd------ 115 (569)
T KOG3671|consen 55 NHWNKTGLCGALCLVKDN-------AQRSYFLRLVDIVNNRLIWDQELYQNFEYRQPRT----FFHTFEG--DD------ 115 (569)
T ss_pred hhhccccCceeEEEeecc-------ccceeeeEEeeecCceeeehHHhhhhceeccCcc----ceeeecc--cc------
Confidence 38999999 999888853 34554444445 678999999999999976322 2344332 11
Q ss_pred cceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 172 AARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 172 ~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
.+.-|-|-++++|++|++.+++.
T Consensus 116 --c~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 116 --CQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred --ceeeecccCHHHHHHHHHHHHHH
Confidence 36667899999999999999865
No 17
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=90.18 E-value=6.2 Score=30.98 Aligned_cols=92 Identities=14% Similarity=0.321 Sum_probs=61.0
Q ss_pred EceeEEEecCCCCCCCCCcccce-eeEEeeeecCCCCCCCCCceEEE-EEcc-ccceeeceeeCCCceeeecCCcEEEEE
Q 028997 80 VKCKLYVKSSDPADKDTWKDRGT-GQLSIKCKEGISKGTKESKPTIL-VRND-VGRVLLNALLYPGIKTNLQKNSIVAIF 156 (200)
Q Consensus 80 ~RaKLf~~~~~~~~~~~WkERGv-G~Lkil~~k~~~~~t~~~k~Rlv-mR~D-~gkVlLN~~L~~~m~~~~~k~~v~~i~ 156 (200)
.-|-||.+... ..+|...|+ |+|-|-+... .-+++|+ |-+. ...+++. |.+.+.++..++-+ ++
T Consensus 27 ~~v~vY~f~~~---~~~W~K~~iEG~LFv~~r~~------~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~~~~l--~~ 93 (122)
T PF06058_consen 27 SHVVVYKFDHE---TNEWEKTDIEGTLFVYKRSS------SPRYGLIVLNRRSTENFVEP--ITPDLDFELQDPYL--IY 93 (122)
T ss_dssp EEEEEEEEETT---TTEEEEEEEEEEEEEEEEET------TS-ECEEEEESSSS--EEEE--E-SGGGEEEETTEE--EE
T ss_pred CeEEEEeecCC---CCcEeecCcEeeEEEEEeec------ccceEEEEecCCCCCceeee--cCCCcEEEEeCCEE--EE
Confidence 34678855432 258999998 8888876542 2245544 4333 6666554 88999999888855 22
Q ss_pred EccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 157 HTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 157 ~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
- .+ ....|-|.|=++++++++.+.|++.
T Consensus 94 r-~~-----------~~~I~GiWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 94 R-ND-----------NQEIYGIWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp E-ET-----------TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred E-cC-----------CceEEEEEEEeHHHHHHHHHHHHhc
Confidence 2 22 2378999999999999999999864
No 18
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=78.24 E-value=2.7 Score=39.62 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=57.6
Q ss_pred CCCcccceee-----EEeeeecCCCCCCCCCceEEEEEcc-c-cceeeceeeCCCceeeecCCcEEEEEEccCCCCCCCC
Q 028997 95 DTWKDRGTGQ-----LSIKCKEGISKGTKESKPTILVRND-V-GRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGN 167 (200)
Q Consensus 95 ~~WkERGvG~-----Lkil~~k~~~~~t~~~k~RlvmR~D-~-gkVlLN~~L~~~m~~~~~k~~v~~i~~~~~~~~~e~~ 167 (200)
+.|.--|.|. ++|-.|- .....|||-|.- - .-|+||..|.++++|...--++ |.-- +
T Consensus 8 k~W~p~g~g~~~~s~V~~~~h~------~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkatptF----HqWR---~--- 71 (409)
T KOG4590|consen 8 KGWLPAGGGGAALSKVRIYHHT------SGNTFRVVGRKSQDDQQVVLNCLILKGLKYNKATPTF----HQWR---D--- 71 (409)
T ss_pred cccccccccCcccceeEEEeec------cCCceeEEeeecccCcccccccccccCcceeecccch----hhhh---h---
Confidence 6788777443 3344443 244688888876 5 8899999999999998755533 2111 1
Q ss_pred CCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997 168 NGSAAARTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 168 ~~~~~~~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
.-..|-|-|.+.++|..|...+-.+
T Consensus 72 ----arqvyGLnFqs~~DA~~Fa~~~~~A 96 (409)
T KOG4590|consen 72 ----ARQVYGLTFQSEQDARAFARGVPVA 96 (409)
T ss_pred ----hhhhhcccccChhhhhhhhhhhhhh
Confidence 1267999999999999998876543
No 19
>PF15411 PH_10: Pleckstrin homology domain
Probab=57.47 E-value=24 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=16.7
Q ss_pred cceEEEEEcCCHHHHHHHHHH
Q 028997 172 AARTFLIRTKTEEDRNKLATA 192 (200)
Q Consensus 172 ~~~~~liR~kt~e~A~eL~~~ 192 (200)
....|.|||++.+..+.=..+
T Consensus 95 e~~~F~lrf~nee~l~~W~~~ 115 (116)
T PF15411_consen 95 ELENFTLRFRNEEQLEQWRSA 115 (116)
T ss_pred CCceEEEEeCCHHHHHHHHhh
Confidence 357999999999888765554
No 20
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=47.07 E-value=21 Score=27.62 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.2
Q ss_pred eEEEEEcCCHHHHHHHHHHHHH
Q 028997 174 RTFLIRTKTEEDRNKLATAIQE 195 (200)
Q Consensus 174 ~~~liR~kt~e~A~eL~~~i~e 195 (200)
-+.||||++.+.|++|+..++-
T Consensus 55 ymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 55 YMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred EEEEEEECCHHHHHHHHHHhCC
Confidence 5778999999999999998763
No 21
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.71 E-value=13 Score=34.21 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=45.0
Q ss_pred ceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeec
Q 028997 74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLN 136 (200)
Q Consensus 74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN 136 (200)
+.-||..+++.|.... ..+.+-.|||+.|+++..++ .+++|++.|-+ .+.+++|
T Consensus 242 ~v~vFl~~~~~~rtd~---i~~s~~~~~i~~~~~~~~r~------~~kak~~~~~e~s~~~l~~ 296 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQ---IYKSLSHRSIAALKSRVERE------CLKAKMPAPEEGSAPLLKE 296 (327)
T ss_pred cceEEEeeccccchhh---hhhhhhhhhhhhhhcccchh------hhhcccCCCcccccccccc
Confidence 7789999999984321 23589999999999999874 45899999999 9999988
No 22
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.49 E-value=1.2e+02 Score=25.64 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCceEEEEEcc--ccce-eeceeeCCCceeeecCCc
Q 028997 119 ESKPTILVRND--VGRV-LLNALLYPGIKTNLQKNS 151 (200)
Q Consensus 119 ~~k~RlvmR~D--~gkV-lLN~~L~~~m~~~~~k~~ 151 (200)
.+|.|++||-| .|-| =|=+.|+|..+|+..++.
T Consensus 31 ~~klRVi~~md~~lg~ilplla~l~P~anY~~kk~~ 66 (193)
T COG4871 31 SSKLRVIANMDPPLGGILPLLAPLFPRANYSDKKNI 66 (193)
T ss_pred ccceEEEeecCCCcchhHHHhHhhCCCcccccccce
Confidence 56999999999 5544 245678888888765553
No 23
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=33.56 E-value=1.2e+02 Score=30.17 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=50.8
Q ss_pred CCceEEEEEcc-ccceeeceeeCCCceeeecCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHH
Q 028997 119 ESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAI 193 (200)
Q Consensus 119 ~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i 193 (200)
+|+.-..+|-+ --+++|-..|.++|++...-.+..|+|+..+. + ..-+|+|||++-....+|..++
T Consensus 262 ~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~~tFvwny~~~----n-----~~~s~~LrF~d~~~~~qF~~~~ 328 (776)
T COG5167 262 DGKEVFWIRIETRDDVILFEEVRTETNPYFDQKNTTFVWNYMED----N-----VFHSFSLRFLDNLDFLQFLSKY 328 (776)
T ss_pred cCCeEEEEEEecccceeehheeccccCcceecccceeeeeeecc----c-----chheeeeeecchhHHHHHHHHH
Confidence 56788888888 66789999999999988743334588875442 1 4679999999998888888765
No 24
>PHA02991 HT motif gene family protein; Provisional
Probab=27.14 E-value=24 Score=27.98 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.3
Q ss_pred CCcccceeeEEeeeec
Q 028997 96 TWKDRGTGQLSIKCKE 111 (200)
Q Consensus 96 ~WkERGvG~Lkil~~k 111 (200)
=|||+|+|.++-+.-.
T Consensus 13 Fwke~~igdi~t~~is 28 (120)
T PHA02991 13 FWKEIGIGDIKTLEIS 28 (120)
T ss_pred hhhhhccCcEEEEEee
Confidence 4999999999887643
No 25
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=23.08 E-value=79 Score=23.33 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=19.3
Q ss_pred CceEEEEEccccceeeceeeCCCc
Q 028997 120 SKPTILVRNDVGRVLLNALLYPGI 143 (200)
Q Consensus 120 ~k~RlvmR~D~gkVlLN~~L~~~m 143 (200)
...||++|.|- +++||.+|+-++
T Consensus 30 Nv~Ri~Ikk~~-~tll~iPlt~gv 52 (84)
T PF14242_consen 30 NVTRIIIKKDD-KTLLDIPLTAGV 52 (84)
T ss_pred CeEEEEEEcCC-eEEEEeeeehHH
Confidence 37899999996 889999988753
No 26
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=22.48 E-value=86 Score=23.72 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=17.2
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHh
Q 028997 174 RTFLIRTKTEEDRNKLATAIQEY 196 (200)
Q Consensus 174 ~~~liR~kt~e~A~eL~~~i~e~ 196 (200)
..=.|||++++.|+.+.+++.+.
T Consensus 38 ~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 38 TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp SEEEEEESS---HHHHHHHHHHT
T ss_pred CEEEEEECCcchHHHHHHHHHhc
Confidence 46788999999999999998775
No 27
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=21.22 E-value=3.4e+02 Score=19.94 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.0
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhC
Q 028997 174 RTFLIRTKTEEDRNKLATAIQEYA 197 (200)
Q Consensus 174 ~~~liR~kt~e~A~eL~~~i~e~~ 197 (200)
.+|.|...+.+++++-.++|+..+
T Consensus 77 Rty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 77 RKFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHh
Confidence 799999999999999999998764
No 28
>cd07881 RHD-n_NFAT N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development.
Probab=21.15 E-value=76 Score=26.52 Aligned_cols=11 Identities=9% Similarity=0.326 Sum_probs=8.7
Q ss_pred CCceEEEEEcc
Q 028997 119 ESKPTILVRND 129 (200)
Q Consensus 119 ~~k~RlvmR~D 129 (200)
+-++|||.|.+
T Consensus 142 ~Tr~RlvFRv~ 152 (175)
T cd07881 142 NTRVRLVFRVH 152 (175)
T ss_pred ccEEEEEEEEe
Confidence 44889999986
Done!