Query 028999
Match_columns 200
No_of_seqs 200 out of 706
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 6.7E-15 1.5E-19 100.2 4.1 51 47-97 2-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.5 2.6E-14 5.6E-19 97.3 5.3 56 45-100 3-59 (60)
3 KOG1318 Helix loop helix trans 99.5 5.5E-14 1.2E-18 130.7 8.8 85 46-130 233-322 (411)
4 smart00353 HLH helix loop heli 99.5 1.4E-13 3.1E-18 92.2 6.4 51 51-101 1-52 (53)
5 KOG1319 bHLHZip transcription 99.2 7.1E-11 1.5E-15 100.9 8.1 80 46-125 62-146 (229)
6 KOG2483 Upstream transcription 99.1 1E-09 2.2E-14 95.9 10.8 84 42-125 55-139 (232)
7 KOG4304 Transcriptional repres 98.6 3.6E-08 7.8E-13 86.9 2.9 60 42-101 28-93 (250)
8 KOG3561 Aryl-hydrocarbon recep 98.4 2.2E-07 4.8E-12 93.0 5.3 52 47-99 21-75 (803)
9 KOG2588 Predicted DNA-binding 98.3 4.7E-07 1E-11 91.5 5.2 76 34-111 265-340 (953)
10 KOG0561 bHLH transcription fac 98.3 7.3E-07 1.6E-11 81.1 3.9 69 46-114 60-128 (373)
11 KOG3960 Myogenic helix-loop-he 98.1 1E-05 2.3E-10 72.0 6.8 64 41-104 113-176 (284)
12 PLN03217 transcription factor 97.8 6.8E-05 1.5E-09 57.1 5.8 56 58-113 19-78 (93)
13 KOG4029 Transcription factor H 97.7 3.7E-05 8.1E-10 66.1 4.4 58 45-102 108-167 (228)
14 PRK15422 septal ring assembly 97.5 0.0015 3.4E-08 48.9 9.2 60 86-145 13-72 (79)
15 COG3074 Uncharacterized protei 97.3 0.0026 5.6E-08 47.1 9.2 60 86-145 13-72 (79)
16 PF06005 DUF904: Protein of un 97.3 0.0034 7.4E-08 46.0 9.4 45 88-132 15-59 (72)
17 PF06005 DUF904: Protein of un 97.2 0.0062 1.3E-07 44.6 9.9 56 90-145 3-58 (72)
18 TIGR02894 DNA_bind_RsfA transc 96.8 0.01 2.3E-07 49.7 9.2 61 85-145 81-144 (161)
19 KOG4005 Transcription factor X 96.5 0.036 7.8E-07 49.6 11.1 88 47-142 60-148 (292)
20 KOG3910 Helix loop helix trans 96.4 0.0024 5.3E-08 61.8 3.4 72 46-122 526-599 (632)
21 PRK15422 septal ring assembly 96.1 0.064 1.4E-06 40.3 8.7 56 90-145 3-65 (79)
22 smart00338 BRLZ basic region l 96.0 0.028 6.1E-07 39.4 6.2 38 91-128 26-63 (65)
23 PF00170 bZIP_1: bZIP transcri 95.9 0.042 9.2E-07 38.4 6.5 37 91-127 26-62 (64)
24 PF06156 DUF972: Protein of un 95.8 0.077 1.7E-06 41.6 8.3 52 95-146 5-56 (107)
25 KOG4447 Transcription factor T 95.8 0.0095 2.1E-07 50.0 3.3 53 46-98 78-130 (173)
26 PRK13729 conjugal transfer pil 95.8 0.12 2.6E-06 49.9 11.1 55 91-145 69-123 (475)
27 PRK13169 DNA replication intia 95.3 0.14 3E-06 40.5 8.3 51 95-145 5-55 (110)
28 KOG2264 Exostosin EXT1L [Signa 95.3 0.18 3.9E-06 50.2 10.8 61 85-145 87-147 (907)
29 TIGR03752 conj_TIGR03752 integ 95.2 0.16 3.6E-06 48.9 10.0 60 86-145 61-142 (472)
30 PRK11637 AmiB activator; Provi 95.2 0.33 7.1E-06 45.2 11.8 60 85-144 69-128 (428)
31 PRK04406 hypothetical protein; 95.0 0.47 1E-05 34.9 9.8 54 93-146 6-59 (75)
32 PF07106 TBPIP: Tat binding pr 94.8 0.13 2.7E-06 42.2 7.1 54 93-146 81-136 (169)
33 PF12325 TMF_TATA_bd: TATA ele 94.7 0.32 7E-06 38.8 9.0 47 90-136 15-61 (120)
34 PF06156 DUF972: Protein of un 94.7 0.3 6.5E-06 38.2 8.5 50 91-140 8-57 (107)
35 PRK02119 hypothetical protein; 94.6 0.65 1.4E-05 34.0 9.8 54 93-146 4-57 (73)
36 KOG0996 Structural maintenance 94.6 0.58 1.3E-05 49.6 12.6 83 61-145 804-897 (1293)
37 PRK00846 hypothetical protein; 94.5 0.64 1.4E-05 34.7 9.5 52 95-146 10-61 (77)
38 COG3074 Uncharacterized protei 94.4 0.46 9.9E-06 35.4 8.5 51 90-140 3-53 (79)
39 PF04102 SlyX: SlyX; InterPro 94.4 0.31 6.8E-06 35.0 7.5 51 96-146 2-52 (69)
40 TIGR02449 conserved hypothetic 94.3 0.54 1.2E-05 34.1 8.5 53 93-145 9-61 (65)
41 PF08317 Spc7: Spc7 kinetochor 94.3 0.89 1.9E-05 41.2 12.0 17 56-72 184-200 (325)
42 PF08614 ATG16: Autophagy prot 94.2 0.51 1.1E-05 39.6 9.5 82 56-144 88-169 (194)
43 COG4026 Uncharacterized protei 94.2 0.45 9.7E-06 42.6 9.4 52 93-144 137-188 (290)
44 PRK10884 SH3 domain-containing 94.1 0.41 8.9E-06 41.3 9.0 78 55-142 92-169 (206)
45 PF02183 HALZ: Homeobox associ 94.1 0.23 5E-06 33.3 5.8 39 103-141 3-41 (45)
46 PRK00295 hypothetical protein; 94.0 0.94 2E-05 32.6 9.3 51 96-146 3-53 (68)
47 PRK02793 phi X174 lysis protei 94.0 1 2.3E-05 32.7 9.6 52 95-146 5-56 (72)
48 PF10211 Ax_dynein_light: Axon 94.0 0.85 1.8E-05 38.7 10.5 17 56-72 59-75 (189)
49 PRK10884 SH3 domain-containing 93.9 1.4 3E-05 38.1 12.0 27 117-143 137-163 (206)
50 PF12329 TMF_DNA_bd: TATA elem 93.6 0.84 1.8E-05 33.3 8.6 55 91-145 12-66 (74)
51 TIGR02449 conserved hypothetic 93.6 1.3 2.9E-05 32.0 9.4 53 93-145 2-54 (65)
52 PRK11637 AmiB activator; Provi 93.5 0.9 2E-05 42.3 10.9 43 102-144 79-121 (428)
53 COG3883 Uncharacterized protei 93.4 0.76 1.6E-05 41.4 9.7 63 82-144 36-98 (265)
54 smart00787 Spc7 Spc7 kinetocho 93.4 1.3 2.9E-05 40.4 11.5 83 55-140 178-260 (312)
55 PF04880 NUDE_C: NUDE protein, 93.4 0.14 3E-06 43.2 4.8 43 96-142 5-47 (166)
56 PRK04325 hypothetical protein; 93.4 1.3 2.8E-05 32.4 9.3 53 94-146 5-57 (74)
57 PRK00736 hypothetical protein; 93.3 1.4 3.1E-05 31.7 9.3 50 97-146 4-53 (68)
58 KOG3560 Aryl-hydrocarbon recep 93.3 0.056 1.2E-06 53.2 2.6 60 35-94 10-75 (712)
59 COG3883 Uncharacterized protei 93.2 0.53 1.1E-05 42.4 8.4 60 86-145 33-92 (265)
60 PF13851 GAS: Growth-arrest sp 93.1 1 2.2E-05 38.5 9.6 60 85-144 21-80 (201)
61 KOG4196 bZIP transcription fac 92.9 1.2 2.5E-05 36.6 9.2 50 93-143 70-119 (135)
62 PF00170 bZIP_1: bZIP transcri 92.9 1.2 2.6E-05 31.0 8.2 34 108-141 29-62 (64)
63 PRK13169 DNA replication intia 92.9 1 2.2E-05 35.6 8.6 50 91-140 8-57 (110)
64 PRK13729 conjugal transfer pil 92.8 0.95 2.1E-05 43.8 10.0 59 85-143 70-128 (475)
65 PHA02562 46 endonuclease subun 92.8 1.2 2.6E-05 42.0 10.7 75 57-138 331-405 (562)
66 PF13815 Dzip-like_N: Iguana/D 92.5 1.2 2.5E-05 34.9 8.5 55 85-142 63-117 (118)
67 PF04111 APG6: Autophagy prote 92.5 0.68 1.5E-05 42.1 8.2 16 129-144 116-131 (314)
68 PF12325 TMF_TATA_bd: TATA ele 92.3 2.1 4.6E-05 34.2 9.9 65 80-144 12-79 (120)
69 PF13870 DUF4201: Domain of un 92.2 2.2 4.9E-05 35.1 10.3 63 86-148 72-134 (177)
70 PF10473 CENP-F_leu_zip: Leuci 92.1 1.8 3.9E-05 35.6 9.5 44 102-145 49-92 (140)
71 PF02183 HALZ: Homeobox associ 92.1 0.64 1.4E-05 31.2 5.7 37 96-132 3-39 (45)
72 TIGR02894 DNA_bind_RsfA transc 92.1 1.2 2.6E-05 37.6 8.5 54 90-143 96-149 (161)
73 PF11932 DUF3450: Protein of u 92.0 1.1 2.3E-05 39.0 8.6 6 179-184 214-219 (251)
74 PF04728 LPP: Lipoprotein leuc 91.9 1.8 3.9E-05 30.6 8.0 46 93-138 5-50 (56)
75 PF08172 CASP_C: CASP C termin 91.9 0.83 1.8E-05 40.5 7.8 52 94-145 82-133 (248)
76 smart00338 BRLZ basic region l 91.7 2.3 5.1E-05 29.5 8.5 33 109-141 30-62 (65)
77 PF07798 DUF1640: Protein of u 91.5 2.5 5.4E-05 35.1 9.9 22 122-143 76-97 (177)
78 COG4467 Regulator of replicati 91.4 1.3 2.9E-05 35.2 7.7 49 96-144 6-54 (114)
79 PF14197 Cep57_CLD_2: Centroso 91.4 2 4.4E-05 31.1 8.1 52 93-144 7-65 (69)
80 PF14197 Cep57_CLD_2: Centroso 91.4 2.6 5.6E-05 30.6 8.6 51 89-139 17-67 (69)
81 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.3 1.9 4.1E-05 34.2 8.7 59 87-145 55-117 (132)
82 TIGR02209 ftsL_broad cell divi 91.3 3.7 8.1E-05 29.5 9.5 46 96-142 22-67 (85)
83 TIGR02231 conserved hypothetic 91.2 1.8 3.9E-05 41.4 9.9 86 57-146 72-172 (525)
84 PF07200 Mod_r: Modifier of ru 91.2 2 4.4E-05 34.2 8.8 62 86-147 29-90 (150)
85 COG5570 Uncharacterized small 91.2 0.74 1.6E-05 32.4 5.3 46 97-142 4-56 (57)
86 KOG3119 Basic region leucine z 90.9 2.3 4.9E-05 38.0 9.6 54 91-144 194-247 (269)
87 KOG1962 B-cell receptor-associ 90.8 3.6 7.9E-05 36.1 10.6 59 86-144 153-211 (216)
88 PF07716 bZIP_2: Basic region 90.8 0.76 1.7E-05 31.2 5.1 32 109-140 22-53 (54)
89 COG0216 PrfA Protein chain rel 90.7 4.5 9.7E-05 38.0 11.6 87 59-145 10-102 (363)
90 PF07106 TBPIP: Tat binding pr 90.6 1.2 2.5E-05 36.5 7.1 53 93-145 74-128 (169)
91 KOG2391 Vacuolar sorting prote 90.6 1.5 3.2E-05 41.1 8.4 42 104-145 224-265 (365)
92 PF10234 Cluap1: Clusterin-ass 90.6 1.3 2.8E-05 40.0 7.8 57 96-153 167-224 (267)
93 PF12808 Mto2_bdg: Micro-tubul 90.5 1 2.3E-05 31.3 5.6 47 93-139 3-49 (52)
94 KOG3119 Basic region leucine z 90.5 1.5 3.2E-05 39.1 8.0 33 94-126 218-250 (269)
95 KOG3898 Transcription factor N 90.4 0.26 5.6E-06 43.7 3.2 53 46-98 72-125 (254)
96 PF11932 DUF3450: Protein of u 90.4 2.9 6.3E-05 36.3 9.7 30 115-144 66-95 (251)
97 PF04977 DivIC: Septum formati 90.3 2.4 5.2E-05 29.7 7.6 42 102-143 21-62 (80)
98 PF11559 ADIP: Afadin- and alp 90.2 6.7 0.00014 31.4 11.0 12 60-71 6-17 (151)
99 COG2433 Uncharacterized conser 90.2 2 4.4E-05 42.9 9.4 44 88-131 419-462 (652)
100 KOG3582 Mlx interactors and re 90.1 0.13 2.9E-06 51.8 1.2 81 45-126 650-734 (856)
101 PF08172 CASP_C: CASP C termin 90.1 2.5 5.4E-05 37.5 9.1 61 80-140 75-135 (248)
102 PF14662 CCDC155: Coiled-coil 89.9 2.8 6E-05 36.3 8.9 40 107-146 90-129 (193)
103 PF10146 zf-C4H2: Zinc finger- 89.8 3.5 7.6E-05 36.3 9.7 25 90-114 31-55 (230)
104 PF04111 APG6: Autophagy prote 89.6 3.5 7.5E-05 37.6 9.9 37 92-128 51-87 (314)
105 PF10805 DUF2730: Protein of u 89.5 2.4 5.1E-05 32.8 7.5 45 97-141 48-94 (106)
106 PF05529 Bap31: B-cell recepto 89.4 3.4 7.5E-05 34.3 9.1 28 117-144 159-186 (192)
107 TIGR00219 mreC rod shape-deter 89.4 2.6 5.7E-05 37.7 8.9 42 101-145 69-110 (283)
108 PRK09039 hypothetical protein; 89.3 3 6.6E-05 38.3 9.3 54 85-138 131-184 (343)
109 PF10224 DUF2205: Predicted co 89.2 2.7 5.9E-05 31.5 7.4 42 103-144 21-62 (80)
110 PF04977 DivIC: Septum formati 89.0 1.3 2.8E-05 31.1 5.3 31 94-124 20-50 (80)
111 PF11559 ADIP: Afadin- and alp 88.9 11 0.00023 30.2 11.8 21 52-72 48-68 (151)
112 PRK00888 ftsB cell division pr 88.8 1.2 2.6E-05 34.5 5.5 43 95-144 31-73 (105)
113 PF07989 Microtub_assoc: Micro 88.7 4.1 8.8E-05 30.0 8.0 21 94-114 3-23 (75)
114 PRK13922 rod shape-determining 88.7 3.8 8.3E-05 35.8 9.2 39 102-144 73-111 (276)
115 KOG0250 DNA repair protein RAD 88.7 2.7 5.8E-05 44.4 9.3 55 92-146 402-456 (1074)
116 PF05667 DUF812: Protein of un 88.6 2.2 4.8E-05 42.3 8.4 59 87-145 324-382 (594)
117 PF09789 DUF2353: Uncharacteri 88.3 7.7 0.00017 35.9 11.2 65 57-122 38-110 (319)
118 PF05266 DUF724: Protein of un 88.3 11 0.00023 32.3 11.4 15 128-142 161-175 (190)
119 PRK10803 tol-pal system protei 88.3 2.8 6.1E-05 37.1 8.1 49 93-141 56-104 (263)
120 PF02403 Seryl_tRNA_N: Seryl-t 88.3 4 8.8E-05 30.7 8.0 50 95-144 40-92 (108)
121 PF07888 CALCOCO1: Calcium bin 88.1 3.7 8E-05 40.6 9.5 50 80-129 135-188 (546)
122 PF10234 Cluap1: Clusterin-ass 87.9 5.7 0.00012 35.9 9.9 60 86-145 171-237 (267)
123 PRK09039 hypothetical protein; 87.7 4.5 9.7E-05 37.2 9.4 46 99-144 138-183 (343)
124 COG1579 Zn-ribbon protein, pos 87.6 6.3 0.00014 35.1 9.9 43 94-136 92-134 (239)
125 PRK13922 rod shape-determining 87.6 3.4 7.4E-05 36.1 8.2 25 90-114 68-92 (276)
126 PF11180 DUF2968: Protein of u 87.6 7.1 0.00015 33.8 9.9 56 93-148 128-183 (192)
127 PF15035 Rootletin: Ciliary ro 87.6 5.9 0.00013 33.6 9.3 60 84-143 60-119 (182)
128 COG0497 RecN ATPase involved i 87.5 9.2 0.0002 37.9 11.8 90 56-153 297-395 (557)
129 COG4942 Membrane-bound metallo 87.4 6.3 0.00014 37.8 10.3 20 106-125 60-79 (420)
130 PF04156 IncA: IncA protein; 87.3 6.1 0.00013 32.4 9.2 50 95-144 127-183 (191)
131 PF05008 V-SNARE: Vesicle tran 87.1 4.5 9.8E-05 28.8 7.3 58 80-143 21-78 (79)
132 PF09304 Cortex-I_coil: Cortex 87.0 7.2 0.00016 30.9 8.8 30 96-125 42-71 (107)
133 PF00038 Filament: Intermediat 87.0 4.8 0.0001 35.4 8.8 13 93-105 218-230 (312)
134 PF05529 Bap31: B-cell recepto 87.0 4.2 9E-05 33.8 8.0 35 108-142 157-191 (192)
135 PF15070 GOLGA2L5: Putative go 86.9 4.5 9.7E-05 40.4 9.5 55 91-145 4-62 (617)
136 COG2433 Uncharacterized conser 86.9 2.9 6.4E-05 41.8 8.1 35 91-125 429-463 (652)
137 PF04156 IncA: IncA protein; 86.8 7.3 0.00016 32.0 9.3 43 98-140 123-165 (191)
138 TIGR02492 flgK_ends flagellar 86.8 8 0.00017 34.9 10.3 76 60-137 108-184 (322)
139 PF15458 NTR2: Nineteen comple 86.8 8.3 0.00018 34.1 10.2 21 47-67 140-160 (254)
140 KOG4395 Transcription factor A 86.7 1.1 2.4E-05 40.5 4.7 54 45-98 173-227 (285)
141 KOG4343 bZIP transcription fac 86.7 0.92 2E-05 44.8 4.5 39 91-129 302-340 (655)
142 KOG0612 Rho-associated, coiled 86.6 12 0.00027 40.2 12.7 10 1-10 395-404 (1317)
143 PF04728 LPP: Lipoprotein leuc 86.5 7.4 0.00016 27.5 7.8 48 98-145 3-50 (56)
144 PTZ00454 26S protease regulato 86.5 3.5 7.6E-05 38.6 8.1 51 92-149 16-66 (398)
145 PF14662 CCDC155: Coiled-coil 86.4 6.7 0.00014 34.0 9.1 60 85-144 54-113 (193)
146 COG1256 FlgK Flagellar hook-as 86.4 6.5 0.00014 38.7 10.1 80 58-138 110-189 (552)
147 PF14282 FlxA: FlxA-like prote 86.4 5 0.00011 31.0 7.6 55 90-144 18-76 (106)
148 PHA03011 hypothetical protein; 86.3 8.6 0.00019 30.6 8.9 59 86-144 59-117 (120)
149 COG4942 Membrane-bound metallo 86.3 13 0.00027 35.8 11.7 18 54-71 110-127 (420)
150 PF15397 DUF4618: Domain of un 86.2 4.2 9.1E-05 36.6 8.1 83 59-143 141-224 (258)
151 PF08826 DMPK_coil: DMPK coile 86.1 10 0.00022 27.1 9.4 54 86-139 6-59 (61)
152 KOG3558 Hypoxia-inducible fact 86.1 0.53 1.2E-05 47.5 2.6 51 47-98 47-99 (768)
153 PF04102 SlyX: SlyX; InterPro 86.0 5.5 0.00012 28.5 7.2 49 91-139 4-52 (69)
154 PF10224 DUF2205: Predicted co 86.0 6.8 0.00015 29.4 7.8 48 93-140 18-65 (80)
155 PRK00888 ftsB cell division pr 85.9 3.7 8E-05 31.8 6.7 34 107-140 29-62 (105)
156 PHA02562 46 endonuclease subun 85.9 5.6 0.00012 37.6 9.2 16 57-72 307-322 (562)
157 KOG0250 DNA repair protein RAD 85.9 9.6 0.00021 40.4 11.4 88 55-145 371-462 (1074)
158 PF06632 XRCC4: DNA double-str 85.8 7.1 0.00015 36.3 9.6 45 85-129 131-175 (342)
159 PF05103 DivIVA: DivIVA protei 85.6 0.75 1.6E-05 35.4 2.7 48 88-135 22-69 (131)
160 PRK04406 hypothetical protein; 85.5 6.7 0.00015 28.8 7.6 48 91-138 11-58 (75)
161 KOG2264 Exostosin EXT1L [Signa 85.5 5.4 0.00012 40.2 9.0 64 85-148 80-143 (907)
162 PF06632 XRCC4: DNA double-str 85.4 5.5 0.00012 37.0 8.7 37 92-128 145-181 (342)
163 TIGR03752 conj_TIGR03752 integ 85.4 4.8 0.0001 39.1 8.5 36 91-126 59-94 (472)
164 PRK10803 tol-pal system protei 85.4 3.9 8.4E-05 36.2 7.4 44 102-145 58-101 (263)
165 PF13094 CENP-Q: CENP-Q, a CEN 85.3 13 0.00028 30.1 9.9 66 80-145 16-81 (160)
166 PTZ00454 26S protease regulato 85.3 2.8 6.2E-05 39.2 6.8 43 90-132 21-63 (398)
167 PF10211 Ax_dynein_light: Axon 85.3 22 0.00047 30.1 11.6 67 47-119 74-148 (189)
168 COG4026 Uncharacterized protei 85.2 7.6 0.00016 35.0 9.0 40 105-144 163-202 (290)
169 COG2919 Septum formation initi 85.1 7.2 0.00016 30.6 8.1 32 96-127 55-86 (117)
170 PF08614 ATG16: Autophagy prot 85.1 14 0.00031 30.9 10.4 50 92-141 131-180 (194)
171 PF07200 Mod_r: Modifier of ru 85.0 6.6 0.00014 31.2 8.0 53 92-144 28-80 (150)
172 COG2900 SlyX Uncharacterized p 85.0 14 0.00029 27.5 9.3 52 94-145 4-55 (72)
173 PF07716 bZIP_2: Basic region 85.0 9.6 0.00021 25.7 8.5 29 91-119 25-53 (54)
174 COG3937 Uncharacterized conser 84.9 7.3 0.00016 30.9 7.9 58 86-143 41-107 (108)
175 PF12718 Tropomyosin_1: Tropom 84.8 11 0.00024 30.6 9.3 28 91-118 14-41 (143)
176 COG1340 Uncharacterized archae 84.8 8.9 0.00019 35.2 9.5 53 91-143 48-100 (294)
177 KOG4360 Uncharacterized coiled 84.7 9.6 0.00021 37.7 10.2 50 80-129 211-264 (596)
178 TIGR00606 rad50 rad50. This fa 84.6 8.4 0.00018 41.1 10.7 82 55-140 849-930 (1311)
179 smart00787 Spc7 Spc7 kinetocho 84.6 7.2 0.00016 35.7 8.9 15 90-104 178-192 (312)
180 PF09726 Macoilin: Transmembra 84.4 19 0.0004 36.6 12.5 18 55-72 544-561 (697)
181 PRK15396 murein lipoprotein; P 84.3 8.5 0.00018 28.7 7.7 45 93-137 27-71 (78)
182 PF06810 Phage_GP20: Phage min 84.2 6.2 0.00013 32.6 7.6 35 94-128 30-67 (155)
183 PF10018 Med4: Vitamin-D-recep 84.2 19 0.00042 30.1 10.8 40 92-131 23-62 (188)
184 PRK02224 chromosome segregatio 84.1 13 0.00028 37.4 11.3 52 91-142 349-400 (880)
185 PF05266 DUF724: Protein of un 84.1 10 0.00022 32.4 9.2 26 120-145 160-185 (190)
186 PF06785 UPF0242: Uncharacteri 83.9 6.7 0.00015 37.0 8.4 53 85-137 121-173 (401)
187 PF10473 CENP-F_leu_zip: Leuci 83.7 15 0.00032 30.2 9.6 72 58-132 19-93 (140)
188 KOG3650 Predicted coiled-coil 83.7 5.8 0.00013 31.5 6.9 39 100-138 65-103 (120)
189 PRK07739 flgK flagellar hook-a 83.5 12 0.00027 35.9 10.5 75 61-137 121-196 (507)
190 PF10805 DUF2730: Protein of u 83.5 12 0.00026 28.8 8.6 54 93-146 37-92 (106)
191 TIGR02209 ftsL_broad cell divi 83.5 4.5 9.8E-05 29.0 5.9 30 95-124 28-57 (85)
192 TIGR02169 SMC_prok_A chromosom 83.5 15 0.00033 37.3 11.6 6 18-23 642-647 (1164)
193 KOG4797 Transcriptional regula 83.5 7.3 0.00016 31.3 7.4 30 104-133 66-95 (123)
194 PRK02224 chromosome segregatio 83.5 14 0.00031 37.1 11.3 16 89-104 535-550 (880)
195 PF12709 Kinetocho_Slk19: Cent 83.4 15 0.00032 28.2 8.8 26 110-135 47-72 (87)
196 KOG0249 LAR-interacting protei 83.4 7.5 0.00016 40.0 9.1 42 104-145 215-256 (916)
197 KOG3559 Transcriptional regula 83.4 1.3 2.8E-05 42.8 3.7 46 52-98 7-54 (598)
198 PF03962 Mnd1: Mnd1 family; I 83.3 8.6 0.00019 32.6 8.3 17 127-143 111-127 (188)
199 PF04880 NUDE_C: NUDE protein, 83.2 1.4 3.1E-05 37.1 3.5 40 85-128 8-47 (166)
200 PF12718 Tropomyosin_1: Tropom 83.1 9.2 0.0002 31.1 8.1 42 103-144 19-60 (143)
201 PRK07191 flgK flagellar hook-a 82.9 13 0.00027 35.4 10.1 77 61-138 109-185 (456)
202 PRK04325 hypothetical protein; 82.8 8.4 0.00018 28.1 7.1 49 91-139 9-57 (74)
203 PF09744 Jnk-SapK_ap_N: JNK_SA 82.7 12 0.00026 31.2 8.8 46 93-138 91-136 (158)
204 PRK07521 flgK flagellar hook-a 82.4 12 0.00027 35.7 9.9 75 61-137 104-179 (483)
205 KOG4196 bZIP transcription fac 82.4 14 0.0003 30.4 8.8 38 108-145 77-114 (135)
206 PF14988 DUF4515: Domain of un 82.4 13 0.00028 32.1 9.2 58 82-141 142-199 (206)
207 TIGR01069 mutS2 MutS2 family p 82.3 9.7 0.00021 38.8 9.7 15 130-144 576-590 (771)
208 KOG3156 Uncharacterized membra 82.3 11 0.00024 33.3 8.7 38 107-144 103-141 (220)
209 PF14282 FlxA: FlxA-like prote 82.3 6.8 0.00015 30.2 6.8 59 83-141 18-80 (106)
210 PF07888 CALCOCO1: Calcium bin 82.2 11 0.00024 37.2 9.7 35 110-144 197-231 (546)
211 KOG0946 ER-Golgi vesicle-tethe 82.0 9 0.00019 39.8 9.2 61 85-145 658-718 (970)
212 PF13851 GAS: Growth-arrest sp 82.0 19 0.00041 30.8 10.0 40 86-125 88-127 (201)
213 KOG1962 B-cell receptor-associ 81.9 6.4 0.00014 34.6 7.2 54 83-136 154-210 (216)
214 KOG1029 Endocytic adaptor prot 81.9 12 0.00025 39.1 9.9 50 97-146 471-520 (1118)
215 PF04999 FtsL: Cell division p 81.8 19 0.0004 26.7 9.3 33 99-131 36-68 (97)
216 PF04012 PspA_IM30: PspA/IM30 81.8 30 0.00065 29.1 11.7 56 84-139 84-139 (221)
217 PF05008 V-SNARE: Vesicle tran 81.7 16 0.00035 25.9 8.3 40 86-125 34-74 (79)
218 KOG4005 Transcription factor X 81.7 7.7 0.00017 35.1 7.7 89 35-137 55-150 (292)
219 PRK05771 V-type ATP synthase s 81.7 5.6 0.00012 39.1 7.5 80 55-140 49-128 (646)
220 PF09738 DUF2051: Double stran 81.7 9.7 0.00021 34.9 8.6 61 80-144 105-165 (302)
221 PRK06665 flgK flagellar hook-a 81.5 15 0.00033 36.5 10.5 60 79-138 138-197 (627)
222 PF01166 TSC22: TSC-22/dip/bun 81.4 2.5 5.5E-05 30.2 3.7 29 112-140 14-42 (59)
223 KOG0995 Centromere-associated 81.4 20 0.00043 35.8 11.0 31 114-144 334-364 (581)
224 KOG4571 Activating transcripti 81.4 20 0.00044 32.9 10.4 50 88-144 238-287 (294)
225 PF15070 GOLGA2L5: Putative go 81.3 9.5 0.00021 38.1 9.0 55 91-145 15-69 (617)
226 TIGR01554 major_cap_HK97 phage 81.3 7.8 0.00017 35.3 7.9 58 58-119 5-62 (378)
227 PRK05683 flgK flagellar hook-a 81.2 14 0.0003 37.3 10.1 77 61-138 109-185 (676)
228 PRK03992 proteasome-activating 81.2 6.9 0.00015 36.2 7.6 47 95-148 5-51 (389)
229 PRK10869 recombination and rep 81.0 21 0.00046 34.9 11.1 88 56-150 296-391 (553)
230 PF10186 Atg14: UV radiation r 80.9 18 0.00039 31.0 9.6 51 90-140 55-105 (302)
231 PF02403 Seryl_tRNA_N: Seryl-t 80.9 12 0.00026 28.1 7.6 56 90-145 42-100 (108)
232 PF00769 ERM: Ezrin/radixin/mo 80.9 9.7 0.00021 33.5 8.0 56 89-144 59-114 (246)
233 PRK03992 proteasome-activating 80.9 7.1 0.00015 36.1 7.6 44 90-133 7-50 (389)
234 PF10458 Val_tRNA-synt_C: Valy 80.8 15 0.00032 25.9 7.5 49 97-145 3-65 (66)
235 PF06120 Phage_HK97_TLTM: Tail 80.7 12 0.00026 34.4 8.8 56 88-143 49-105 (301)
236 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.6 24 0.00052 27.9 9.6 30 115-144 101-130 (132)
237 PF06103 DUF948: Bacterial pro 80.6 20 0.00043 26.2 9.7 39 93-131 21-59 (90)
238 COG1730 GIM5 Predicted prefold 80.5 9.1 0.0002 31.6 7.3 45 86-133 92-136 (145)
239 PRK00409 recombination and DNA 80.3 9.9 0.00021 38.8 8.9 7 174-180 668-674 (782)
240 PF07889 DUF1664: Protein of u 80.2 13 0.00029 30.0 8.0 49 96-144 66-114 (126)
241 KOG0977 Nuclear envelope prote 80.2 14 0.00029 36.7 9.5 9 63-71 120-128 (546)
242 PRK03918 chromosome segregatio 80.2 30 0.00065 34.7 12.2 30 98-127 666-695 (880)
243 PF04325 DUF465: Protein of un 80.2 9.2 0.0002 25.5 6.0 21 120-140 28-48 (49)
244 PF00038 Filament: Intermediat 80.2 10 0.00023 33.3 8.1 17 93-109 56-72 (312)
245 PF13870 DUF4201: Domain of un 79.9 23 0.0005 29.0 9.6 66 81-146 74-139 (177)
246 PF11544 Spc42p: Spindle pole 79.8 17 0.00036 27.2 7.8 52 89-140 3-54 (76)
247 PF05565 Sipho_Gp157: Siphovir 79.6 33 0.00071 28.2 11.5 81 60-144 5-86 (162)
248 TIGR03185 DNA_S_dndD DNA sulfu 79.6 26 0.00056 34.6 11.4 40 87-126 424-463 (650)
249 COG5185 HEC1 Protein involved 79.6 7.1 0.00015 38.4 7.2 63 81-146 480-546 (622)
250 PF12329 TMF_DNA_bd: TATA elem 79.4 22 0.00047 25.9 9.4 53 91-143 19-71 (74)
251 PF05377 FlaC_arch: Flagella a 79.3 11 0.00023 26.6 6.2 31 107-137 9-39 (55)
252 PF08826 DMPK_coil: DMPK coile 79.2 13 0.00029 26.4 6.9 40 105-144 18-57 (61)
253 PF13815 Dzip-like_N: Iguana/D 79.2 27 0.00058 27.2 9.3 97 46-145 13-113 (118)
254 PRK05771 V-type ATP synthase s 79.1 17 0.00036 35.9 9.9 36 110-145 91-126 (646)
255 PF02388 FemAB: FemAB family; 79.0 15 0.00033 34.2 9.2 54 91-144 242-298 (406)
256 PRK08147 flgK flagellar hook-a 79.0 22 0.00048 34.4 10.5 75 61-137 110-185 (547)
257 PF07334 IFP_35_N: Interferon- 79.0 3.1 6.6E-05 31.1 3.7 24 122-145 3-26 (76)
258 TIGR03689 pup_AAA proteasome A 78.7 6.4 0.00014 38.4 6.7 19 134-152 30-48 (512)
259 PF00769 ERM: Ezrin/radixin/mo 78.7 11 0.00025 33.0 7.8 50 96-145 80-129 (246)
260 PF06103 DUF948: Bacterial pro 78.6 23 0.0005 25.9 9.8 49 88-136 23-71 (90)
261 PRK04778 septation ring format 78.5 36 0.00078 33.2 11.9 64 85-148 377-440 (569)
262 KOG2391 Vacuolar sorting prote 78.5 13 0.00028 35.0 8.4 48 95-142 229-276 (365)
263 PF14389 Lzipper-MIP1: Leucine 78.4 22 0.00048 26.7 8.2 26 120-145 55-80 (88)
264 PF07798 DUF1640: Protein of u 78.3 27 0.00059 28.9 9.6 9 64-72 59-67 (177)
265 PRK14127 cell division protein 78.2 6.3 0.00014 31.1 5.4 28 117-144 42-69 (109)
266 PRK04863 mukB cell division pr 78.2 14 0.0003 40.6 9.6 89 55-144 948-1038(1486)
267 KOG0995 Centromere-associated 77.9 11 0.00025 37.4 8.2 40 90-129 279-318 (581)
268 PF10146 zf-C4H2: Zinc finger- 77.9 25 0.00055 30.9 9.7 61 84-144 32-99 (230)
269 PF12709 Kinetocho_Slk19: Cent 77.9 12 0.00026 28.6 6.7 66 61-131 17-82 (87)
270 PF14257 DUF4349: Domain of un 77.9 18 0.00038 31.4 8.7 64 81-144 129-194 (262)
271 PF04899 MbeD_MobD: MbeD/MobD 77.8 25 0.00053 25.7 8.9 54 95-148 7-64 (70)
272 PRK04654 sec-independent trans 77.8 24 0.00053 31.1 9.4 16 91-106 34-49 (214)
273 PF05377 FlaC_arch: Flagella a 77.7 22 0.00047 25.1 7.4 35 110-144 5-39 (55)
274 PRK08471 flgK flagellar hook-a 77.6 23 0.0005 35.2 10.4 75 61-137 114-189 (613)
275 PF04012 PspA_IM30: PspA/IM30 77.6 27 0.00059 29.4 9.6 56 88-143 95-150 (221)
276 PF05384 DegS: Sensor protein 77.6 27 0.00058 29.2 9.3 57 84-143 2-58 (159)
277 KOG4643 Uncharacterized coiled 77.5 11 0.00023 40.1 8.1 49 96-144 175-223 (1195)
278 KOG1924 RhoA GTPase effector D 77.3 15 0.00032 38.4 8.9 28 59-87 382-409 (1102)
279 TIGR01069 mutS2 MutS2 family p 77.3 14 0.0003 37.7 8.9 10 136-145 599-608 (771)
280 PF10392 COG5: Golgi transport 77.0 26 0.00057 27.7 8.8 78 60-140 37-114 (132)
281 PRK14127 cell division protein 77.0 17 0.00037 28.7 7.6 39 91-129 30-68 (109)
282 PF05837 CENP-H: Centromere pr 77.0 25 0.00054 27.1 8.4 52 92-144 18-69 (106)
283 PF04999 FtsL: Cell division p 76.9 16 0.00034 27.1 7.1 34 106-139 36-69 (97)
284 PF09304 Cortex-I_coil: Cortex 76.9 35 0.00077 27.1 10.4 35 98-132 37-71 (107)
285 PF11544 Spc42p: Spindle pole 76.7 28 0.00061 26.0 8.2 51 95-145 2-52 (76)
286 TIGR02977 phageshock_pspA phag 76.6 28 0.00061 29.8 9.4 51 91-141 99-149 (219)
287 KOG2185 Predicted RNA-processi 76.6 22 0.00047 34.5 9.4 74 33-106 352-435 (486)
288 KOG3433 Protein involved in me 76.5 20 0.00043 31.2 8.4 29 91-119 81-109 (203)
289 PF10883 DUF2681: Protein of u 76.4 19 0.00041 27.4 7.4 22 93-114 25-46 (87)
290 cd00632 Prefoldin_beta Prefold 76.3 21 0.00045 27.0 7.7 37 88-124 60-96 (105)
291 PF09789 DUF2353: Uncharacteri 76.2 15 0.00032 34.1 8.1 54 88-145 127-180 (319)
292 PRK00846 hypothetical protein; 76.1 26 0.00056 26.2 7.9 50 90-139 12-61 (77)
293 PRK06799 flgK flagellar hook-a 75.7 33 0.00071 32.5 10.4 74 61-136 114-188 (431)
294 PF15369 KIAA1328: Uncharacter 75.6 22 0.00047 33.2 8.9 11 61-71 10-20 (328)
295 KOG4447 Transcription factor T 75.5 3.3 7.2E-05 35.0 3.4 45 53-98 29-74 (173)
296 PF10498 IFT57: Intra-flagella 75.5 22 0.00048 33.2 9.1 18 55-72 219-236 (359)
297 PRK15396 murein lipoprotein; P 75.4 23 0.0005 26.4 7.5 48 98-145 25-72 (78)
298 KOG3647 Predicted coiled-coil 75.3 13 0.00029 34.2 7.4 47 99-145 113-159 (338)
299 PF08961 DUF1875: Domain of un 75.3 0.92 2E-05 40.3 0.0 36 84-119 122-157 (243)
300 PF13863 DUF4200: Domain of un 75.3 34 0.00074 26.1 8.9 30 115-144 77-106 (126)
301 TIGR01834 PHA_synth_III_E poly 75.3 21 0.00045 33.2 8.7 58 83-140 255-317 (320)
302 KOG0977 Nuclear envelope prote 75.1 16 0.00034 36.3 8.3 36 110-145 153-188 (546)
303 PRK00409 recombination and DNA 75.1 21 0.00045 36.5 9.5 14 131-144 582-595 (782)
304 PF12777 MT: Microtubule-bindi 75.0 27 0.00058 31.9 9.4 6 170-175 320-325 (344)
305 PF09730 BicD: Microtubule-ass 75.0 18 0.00039 36.9 9.0 84 57-140 28-118 (717)
306 KOG4603 TBP-1 interacting prot 75.0 18 0.00039 31.3 7.6 53 93-145 88-142 (201)
307 PF06637 PV-1: PV-1 protein (P 74.9 45 0.00097 32.1 10.9 22 120-141 350-371 (442)
308 TIGR00414 serS seryl-tRNA synt 74.7 14 0.0003 34.9 7.7 29 116-144 73-101 (418)
309 PRK12714 flgK flagellar hook-a 74.7 28 0.00061 34.6 10.1 77 60-137 108-184 (624)
310 PF05164 ZapA: Cell division p 74.4 28 0.00062 24.8 7.7 37 58-98 27-63 (89)
311 PRK03947 prefoldin subunit alp 74.3 18 0.00038 28.6 7.1 45 86-133 92-136 (140)
312 PF15294 Leu_zip: Leucine zipp 74.1 14 0.00029 33.7 7.1 45 96-140 130-174 (278)
313 PRK05431 seryl-tRNA synthetase 74.1 24 0.00051 33.4 9.1 52 94-145 38-99 (425)
314 PRK10698 phage shock protein P 74.1 35 0.00075 29.6 9.4 51 90-140 98-148 (222)
315 TIGR02338 gimC_beta prefoldin, 74.0 23 0.00049 27.2 7.5 43 84-126 60-102 (110)
316 PF15290 Syntaphilin: Golgi-lo 73.9 23 0.00049 32.7 8.5 14 133-146 156-169 (305)
317 KOG4571 Activating transcripti 73.9 13 0.00028 34.2 6.9 71 48-126 220-290 (294)
318 PF12999 PRKCSH-like: Glucosid 73.5 21 0.00046 30.5 7.7 58 81-140 117-174 (176)
319 PF01166 TSC22: TSC-22/dip/bun 73.5 5 0.00011 28.7 3.3 29 106-134 15-43 (59)
320 PF07047 OPA3: Optic atrophy 3 73.5 29 0.00063 27.8 8.2 9 85-93 78-86 (134)
321 KOG4643 Uncharacterized coiled 73.4 24 0.00051 37.7 9.4 62 84-145 495-556 (1195)
322 TIGR00219 mreC rod shape-deter 73.4 21 0.00046 32.0 8.2 44 89-135 64-107 (283)
323 KOG2751 Beclin-like protein [S 73.3 16 0.00034 35.4 7.7 21 52-72 110-130 (447)
324 KOG3650 Predicted coiled-coil 73.3 11 0.00024 29.9 5.6 64 89-152 47-110 (120)
325 PRK02119 hypothetical protein; 73.2 33 0.00071 25.0 8.2 52 88-139 6-57 (73)
326 PRK06945 flgK flagellar hook-a 73.2 29 0.00063 34.8 9.8 77 61-138 110-186 (651)
327 PF10168 Nup88: Nuclear pore c 73.2 30 0.00064 35.2 10.0 50 83-132 538-599 (717)
328 PF12711 Kinesin-relat_1: Kine 73.1 30 0.00065 26.4 7.7 10 63-72 3-12 (86)
329 PRK11415 hypothetical protein; 73.0 24 0.00053 25.6 7.0 41 99-139 18-66 (74)
330 PF04849 HAP1_N: HAP1 N-termin 72.8 24 0.00052 32.6 8.5 52 93-144 215-266 (306)
331 PF14257 DUF4349: Domain of un 72.4 34 0.00075 29.6 9.1 60 88-148 130-191 (262)
332 PF02996 Prefoldin: Prefoldin 72.4 20 0.00043 27.1 6.8 40 86-128 75-114 (120)
333 PRK02793 phi X174 lysis protei 72.3 33 0.00072 24.8 7.6 50 90-139 7-56 (72)
334 PF12777 MT: Microtubule-bindi 72.2 27 0.00058 31.9 8.7 30 93-122 237-266 (344)
335 PF13118 DUF3972: Protein of u 71.8 49 0.0011 26.9 9.1 62 84-145 63-125 (126)
336 PRK05431 seryl-tRNA synthetase 71.8 36 0.00079 32.1 9.7 30 109-138 70-99 (425)
337 PRK00295 hypothetical protein; 71.7 34 0.00074 24.5 7.9 48 92-139 6-53 (68)
338 COG1340 Uncharacterized archae 71.6 36 0.00079 31.3 9.3 10 85-94 17-26 (294)
339 KOG0982 Centrosomal protein Nu 71.6 24 0.00051 34.4 8.4 33 107-139 299-331 (502)
340 PRK08871 flgK flagellar hook-a 71.2 33 0.00072 34.3 9.7 75 61-136 112-186 (626)
341 PF05600 DUF773: Protein of un 71.1 24 0.00052 34.4 8.6 52 90-141 431-482 (507)
342 PF03962 Mnd1: Mnd1 family; I 70.9 35 0.00075 28.9 8.5 19 118-136 109-127 (188)
343 PF14523 Syntaxin_2: Syntaxin- 70.8 37 0.0008 24.9 7.8 13 60-72 7-19 (102)
344 KOG0804 Cytoplasmic Zn-finger 70.7 29 0.00063 33.9 8.8 18 128-145 430-447 (493)
345 KOG0971 Microtubule-associated 70.6 23 0.00049 37.6 8.5 10 95-104 372-381 (1243)
346 KOG0946 ER-Golgi vesicle-tethe 70.6 42 0.00092 35.1 10.3 68 80-147 639-713 (970)
347 TIGR00634 recN DNA repair prot 70.5 58 0.0013 31.6 11.0 88 56-150 301-396 (563)
348 PRK09973 putative outer membra 70.5 30 0.00066 26.3 7.2 45 92-136 25-69 (85)
349 PF09787 Golgin_A5: Golgin sub 70.5 18 0.00039 34.9 7.5 24 49-72 207-230 (511)
350 TIGR01242 26Sp45 26S proteasom 70.4 13 0.00029 33.6 6.3 22 124-145 18-39 (364)
351 KOG0614 cGMP-dependent protein 70.4 35 0.00076 34.4 9.4 33 112-144 38-70 (732)
352 PF01763 Herpes_UL6: Herpesvir 70.3 16 0.00035 36.3 7.2 44 84-127 363-406 (557)
353 PF01920 Prefoldin_2: Prefoldi 70.2 19 0.00041 26.4 6.1 67 60-127 30-98 (106)
354 PF14988 DUF4515: Domain of un 70.1 34 0.00074 29.5 8.4 49 90-138 155-203 (206)
355 PF03961 DUF342: Protein of un 70.0 38 0.00083 31.9 9.4 32 114-145 377-408 (451)
356 PLN02678 seryl-tRNA synthetase 69.9 36 0.00078 32.8 9.3 30 116-145 75-104 (448)
357 PF04420 CHD5: CHD5-like prote 69.8 20 0.00044 29.4 6.7 21 87-107 36-56 (161)
358 PF05701 WEMBL: Weak chloropla 69.8 34 0.00075 33.1 9.3 25 102-126 306-330 (522)
359 PF06160 EzrA: Septation ring 69.7 70 0.0015 31.3 11.4 83 59-148 354-436 (560)
360 PF03961 DUF342: Protein of un 69.7 36 0.00077 32.1 9.2 29 110-138 380-408 (451)
361 TIGR01242 26Sp45 26S proteasom 69.3 12 0.00027 33.8 5.8 31 108-138 9-39 (364)
362 PF06785 UPF0242: Uncharacteri 69.3 40 0.00086 32.0 9.1 26 86-111 87-112 (401)
363 COG4238 Murein lipoprotein [Ce 69.0 44 0.00095 25.1 7.6 46 93-138 27-72 (78)
364 PF10205 KLRAQ: Predicted coil 69.0 55 0.0012 25.7 9.3 45 100-144 28-72 (102)
365 PF10168 Nup88: Nuclear pore c 69.0 62 0.0013 33.0 11.2 42 58-106 560-601 (717)
366 KOG0964 Structural maintenance 68.9 23 0.0005 37.7 8.2 54 89-142 263-316 (1200)
367 KOG1853 LIS1-interacting prote 68.8 37 0.0008 31.2 8.6 17 123-139 95-111 (333)
368 PRK03947 prefoldin subunit alp 68.8 26 0.00057 27.6 7.0 48 95-142 91-138 (140)
369 TIGR02977 phageshock_pspA phag 68.8 54 0.0012 28.0 9.4 60 85-144 86-145 (219)
370 KOG0982 Centrosomal protein Nu 68.6 73 0.0016 31.2 10.9 52 93-144 299-350 (502)
371 PRK12715 flgK flagellar hook-a 68.6 40 0.00087 33.8 9.7 75 60-135 108-182 (649)
372 PF03954 Lectin_N: Hepatic lec 68.5 14 0.0003 30.5 5.4 51 94-144 58-112 (138)
373 PF05700 BCAS2: Breast carcino 68.4 68 0.0015 27.6 9.9 18 127-144 190-207 (221)
374 PF06216 RTBV_P46: Rice tungro 68.3 36 0.00077 31.4 8.4 51 89-139 62-112 (389)
375 TIGR00606 rad50 rad50. This fa 68.1 87 0.0019 33.7 12.5 60 85-144 306-365 (1311)
376 PF08286 Spc24: Spc24 subunit 68.1 1.8 3.9E-05 33.8 0.2 42 103-144 4-45 (118)
377 PF09432 THP2: Tho complex sub 68.1 41 0.00088 27.6 7.9 52 80-131 52-104 (132)
378 PF06698 DUF1192: Protein of u 68.0 10 0.00022 27.0 3.9 22 122-143 24-45 (59)
379 PF13600 DUF4140: N-terminal d 67.8 14 0.00031 27.6 5.0 27 110-136 75-101 (104)
380 KOG0161 Myosin class II heavy 67.7 33 0.00071 38.8 9.5 36 109-144 1502-1537(1930)
381 KOG4673 Transcription factor T 67.6 28 0.00061 35.9 8.3 53 92-144 867-922 (961)
382 TIGR01843 type_I_hlyD type I s 67.6 93 0.002 27.9 12.2 31 123-153 250-282 (423)
383 PF12252 SidE: Dot/Icm substra 67.5 38 0.00082 36.6 9.4 61 85-145 1104-1172(1439)
384 PF05701 WEMBL: Weak chloropla 66.8 43 0.00093 32.5 9.3 10 133-142 344-353 (522)
385 PF11068 YlqD: YlqD protein; 66.8 67 0.0015 26.0 10.4 67 79-145 15-86 (131)
386 PRK09343 prefoldin subunit bet 66.8 38 0.00083 26.6 7.5 7 65-71 44-50 (121)
387 PF04859 DUF641: Plant protein 66.7 31 0.00067 28.1 7.1 73 52-131 51-127 (131)
388 PRK00736 hypothetical protein; 66.7 45 0.00097 23.9 8.3 50 91-140 5-54 (68)
389 PF09726 Macoilin: Transmembra 66.6 29 0.00063 35.2 8.3 35 92-126 546-580 (697)
390 TIGR03185 DNA_S_dndD DNA sulfu 66.5 28 0.00061 34.3 8.1 12 80-91 165-176 (650)
391 PF10481 CENP-F_N: Cenp-F N-te 66.5 26 0.00056 32.3 7.2 37 82-118 9-45 (307)
392 COG1196 Smc Chromosome segrega 66.4 72 0.0016 33.9 11.4 19 113-131 461-479 (1163)
393 PF07412 Geminin: Geminin; In 66.4 22 0.00049 30.9 6.5 46 91-136 107-156 (200)
394 COG2919 Septum formation initi 66.4 60 0.0013 25.4 8.5 35 107-141 52-86 (117)
395 PF10482 CtIP_N: Tumour-suppre 66.4 69 0.0015 25.9 9.5 75 50-135 45-119 (120)
396 PRK14011 prefoldin subunit alp 66.3 40 0.00087 27.7 7.7 51 86-142 86-136 (144)
397 PF07407 Seadorna_VP6: Seadorn 65.7 10 0.00022 35.8 4.6 32 112-143 32-63 (420)
398 PF07352 Phage_Mu_Gam: Bacteri 65.7 59 0.0013 26.1 8.6 54 86-145 5-58 (149)
399 PF11853 DUF3373: Protein of u 65.6 6.4 0.00014 38.4 3.4 28 113-140 32-59 (489)
400 PF00261 Tropomyosin: Tropomyo 65.5 85 0.0018 27.1 10.0 11 133-143 176-186 (237)
401 KOG2077 JNK/SAPK-associated pr 65.3 18 0.00039 36.6 6.4 30 95-124 326-355 (832)
402 PF04859 DUF641: Plant protein 65.2 30 0.00065 28.2 6.7 36 109-144 84-119 (131)
403 KOG3192 Mitochondrial J-type c 65.2 9.6 0.00021 32.4 3.9 56 59-129 59-116 (168)
404 TIGR00634 recN DNA repair prot 65.2 24 0.00053 34.2 7.3 35 82-117 146-180 (563)
405 PLN02320 seryl-tRNA synthetase 65.1 1E+02 0.0023 30.2 11.5 52 94-145 103-163 (502)
406 COG3879 Uncharacterized protei 65.0 41 0.00088 30.3 8.0 43 95-137 54-96 (247)
407 KOG3584 cAMP response element 65.0 6.9 0.00015 36.2 3.3 29 91-119 312-340 (348)
408 COG4467 Regulator of replicati 64.9 43 0.00093 26.8 7.3 50 80-133 1-50 (114)
409 cd00890 Prefoldin Prefoldin is 64.8 34 0.00073 25.9 6.7 36 94-129 90-125 (129)
410 COG1842 PspA Phage shock prote 64.7 68 0.0015 28.1 9.3 57 83-139 84-140 (225)
411 PF08781 DP: Transcription fac 64.5 31 0.00066 28.6 6.7 45 99-143 2-46 (142)
412 cd07666 BAR_SNX7 The Bin/Amphi 64.5 52 0.0011 29.2 8.7 34 110-143 161-194 (243)
413 KOG0243 Kinesin-like protein [ 64.4 19 0.0004 38.3 6.6 28 77-104 397-424 (1041)
414 PF08286 Spc24: Spc24 subunit 64.3 2.4 5.1E-05 33.1 0.2 42 94-135 2-43 (118)
415 KOG0979 Structural maintenance 64.2 52 0.0011 35.1 9.7 84 51-148 624-707 (1072)
416 KOG4360 Uncharacterized coiled 64.0 92 0.002 31.1 10.8 82 60-145 209-301 (596)
417 PF10498 IFT57: Intra-flagella 63.9 68 0.0015 30.0 9.7 22 123-144 298-319 (359)
418 PF05103 DivIVA: DivIVA protei 63.9 4.1 8.8E-05 31.3 1.4 42 85-126 26-67 (131)
419 PF10779 XhlA: Haemolysin XhlA 63.7 51 0.0011 23.5 7.6 23 95-117 3-25 (71)
420 KOG4370 Ral-GTPase effector RL 63.6 27 0.00058 34.1 7.0 45 95-139 410-454 (514)
421 PF08647 BRE1: BRE1 E3 ubiquit 63.4 44 0.00095 25.2 7.0 14 109-122 28-41 (96)
422 PF09738 DUF2051: Double stran 63.4 46 0.001 30.5 8.3 59 83-144 114-172 (302)
423 TIGR01843 type_I_hlyD type I s 63.4 49 0.0011 29.7 8.4 7 66-72 98-104 (423)
424 PF15058 Speriolin_N: Sperioli 63.3 29 0.00064 30.3 6.6 19 96-114 10-28 (200)
425 PF13600 DUF4140: N-terminal d 63.2 13 0.00028 27.8 4.0 29 114-142 72-100 (104)
426 KOG1029 Endocytic adaptor prot 63.2 53 0.0012 34.5 9.4 58 81-138 528-589 (1118)
427 PF13514 AAA_27: AAA domain 63.2 62 0.0013 34.1 10.2 61 80-140 146-209 (1111)
428 PLN02678 seryl-tRNA synthetase 63.1 67 0.0015 30.9 9.7 30 109-138 75-104 (448)
429 PF15458 NTR2: Nineteen comple 63.0 38 0.00083 29.9 7.6 43 85-130 205-247 (254)
430 TIGR02338 gimC_beta prefoldin, 62.9 36 0.00078 26.1 6.5 42 80-121 63-104 (110)
431 PF10267 Tmemb_cc2: Predicted 62.9 66 0.0014 30.7 9.5 22 51-72 204-225 (395)
432 TIGR02680 conserved hypothetic 62.8 60 0.0013 35.2 10.2 22 83-104 222-243 (1353)
433 PF04420 CHD5: CHD5-like prote 62.5 50 0.0011 27.1 7.7 7 175-181 151-157 (161)
434 PRK01156 chromosome segregatio 62.4 61 0.0013 32.9 9.7 26 115-140 214-239 (895)
435 KOG2991 Splicing regulator [RN 62.3 36 0.00078 31.3 7.3 51 93-143 238-288 (330)
436 COG5509 Uncharacterized small 62.2 14 0.0003 26.8 3.7 36 82-122 14-49 (65)
437 PRK14160 heat shock protein Gr 62.2 41 0.0009 29.4 7.5 7 191-197 198-204 (211)
438 COG5509 Uncharacterized small 62.2 20 0.00044 25.9 4.6 24 121-144 27-50 (65)
439 KOG1937 Uncharacterized conser 62.1 78 0.0017 31.2 9.8 43 87-129 289-335 (521)
440 PF10267 Tmemb_cc2: Predicted 62.1 48 0.001 31.6 8.4 28 84-111 212-239 (395)
441 PF05600 DUF773: Protein of un 62.0 68 0.0015 31.3 9.6 58 86-143 434-491 (507)
442 PHA03247 large tegument protei 62.0 74 0.0016 37.5 10.8 92 63-154 917-1030(3151)
443 PF03993 DUF349: Domain of Unk 61.9 35 0.00076 23.7 5.9 17 129-145 53-69 (77)
444 PF10549 ORF11CD3: ORF11CD3 do 61.9 54 0.0012 23.1 7.0 29 116-144 24-52 (57)
445 PRK04863 mukB cell division pr 61.8 55 0.0012 36.1 9.8 16 57-72 308-323 (1486)
446 PF15397 DUF4618: Domain of un 61.7 56 0.0012 29.5 8.4 28 105-132 81-108 (258)
447 PF03980 Nnf1: Nnf1 ; InterPr 61.6 21 0.00045 27.1 4.9 13 60-72 31-43 (109)
448 PF08961 DUF1875: Domain of un 61.5 2.7 5.8E-05 37.4 0.0 43 89-131 120-162 (243)
449 PF09730 BicD: Microtubule-ass 61.5 66 0.0014 33.0 9.7 54 91-144 34-87 (717)
450 PF07334 IFP_35_N: Interferon- 61.3 18 0.0004 27.0 4.4 21 102-122 4-24 (76)
451 PF08912 Rho_Binding: Rho Bind 61.2 54 0.0012 24.1 6.8 29 98-126 3-31 (69)
452 PLN02320 seryl-tRNA synthetase 61.1 60 0.0013 31.9 9.1 32 109-140 134-165 (502)
453 PRK14161 heat shock protein Gr 61.1 43 0.00093 28.4 7.2 44 82-125 10-53 (178)
454 PF02996 Prefoldin: Prefoldin 61.1 39 0.00084 25.5 6.4 45 96-140 75-119 (120)
455 TIGR00020 prfB peptide chain r 61.0 1.1E+02 0.0023 29.0 10.4 17 123-139 96-112 (364)
456 KOG4603 TBP-1 interacting prot 61.0 60 0.0013 28.2 8.0 24 108-131 119-142 (201)
457 COG3352 FlaC Putative archaeal 60.8 59 0.0013 27.4 7.8 63 59-128 47-109 (157)
458 KOG0804 Cytoplasmic Zn-finger 60.8 1.7E+02 0.0036 28.9 11.8 11 128-138 437-447 (493)
459 PF06705 SF-assemblin: SF-asse 60.7 98 0.0021 26.8 9.6 22 90-111 84-105 (247)
460 PHA02557 22 prohead core prote 60.7 1.4E+02 0.0029 27.4 10.7 61 85-145 135-202 (271)
461 TIGR03007 pepcterm_ChnLen poly 60.6 63 0.0014 30.3 9.0 10 175-184 453-462 (498)
462 PF05546 She9_MDM33: She9 / Md 60.6 54 0.0012 28.8 7.8 49 91-139 32-80 (207)
463 smart00340 HALZ homeobox assoc 60.3 23 0.00051 23.9 4.3 20 104-123 11-30 (44)
464 cd00632 Prefoldin_beta Prefold 60.2 72 0.0016 24.1 10.1 45 94-138 59-103 (105)
465 TIGR03545 conserved hypothetic 60.2 89 0.0019 30.9 10.2 22 124-145 235-256 (555)
466 KOG0837 Transcriptional activa 60.1 22 0.00048 32.4 5.5 71 82-152 197-274 (279)
467 PF09731 Mitofilin: Mitochondr 60.0 1.3E+02 0.0029 29.0 11.2 48 59-106 226-273 (582)
468 COG1345 FliD Flagellar capping 59.9 48 0.001 32.2 8.2 91 52-146 372-481 (483)
469 PF11180 DUF2968: Protein of u 59.7 94 0.002 27.0 9.1 82 56-144 105-186 (192)
470 PF05557 MAD: Mitotic checkpoi 59.7 62 0.0014 32.4 9.2 56 90-145 502-585 (722)
471 KOG3863 bZIP transcription fac 59.6 33 0.00072 34.5 7.1 35 90-124 510-544 (604)
472 PRK04778 septation ring format 59.6 63 0.0014 31.6 9.0 50 96-145 381-430 (569)
473 PRK14126 cell division protein 59.4 39 0.00085 25.1 6.0 19 124-142 63-81 (85)
474 KOG1854 Mitochondrial inner me 59.2 1.3E+02 0.0028 30.6 11.1 50 50-104 281-338 (657)
475 PRK10865 protein disaggregatio 59.1 1.3E+02 0.0028 31.1 11.5 25 81-105 407-431 (857)
476 PF15035 Rootletin: Ciliary ro 59.0 74 0.0016 27.0 8.3 33 96-128 86-118 (182)
477 COG1792 MreC Cell shape-determ 59.0 41 0.0009 30.2 7.1 46 86-135 61-106 (284)
478 PRK11020 hypothetical protein; 59.0 66 0.0014 26.0 7.4 48 62-111 4-51 (118)
479 TIGR01005 eps_transp_fam exopo 58.9 1.5E+02 0.0032 29.6 11.7 18 55-72 294-311 (754)
480 PRK00578 prfB peptide chain re 58.7 1.3E+02 0.0029 28.3 10.6 11 175-185 195-205 (367)
481 PF09766 FimP: Fms-interacting 58.7 54 0.0012 30.3 8.0 39 107-145 103-141 (355)
482 PF05791 Bacillus_HBL: Bacillu 58.6 92 0.002 26.0 8.8 36 110-145 140-175 (184)
483 KOG2751 Beclin-like protein [S 58.5 35 0.00075 33.1 6.8 51 93-143 178-228 (447)
484 KOG0971 Microtubule-associated 58.4 49 0.0011 35.3 8.2 32 112-143 410-441 (1243)
485 PF08657 DASH_Spc34: DASH comp 58.3 86 0.0019 28.1 9.0 60 86-145 175-258 (259)
486 PF05929 Phage_GPO: Phage caps 58.1 96 0.0021 28.2 9.3 89 54-145 165-254 (276)
487 PF02994 Transposase_22: L1 tr 58.0 48 0.001 30.8 7.6 50 95-144 141-190 (370)
488 PF14645 Chibby: Chibby family 58.0 53 0.0012 26.0 6.8 19 96-114 76-94 (116)
489 PRK14153 heat shock protein Gr 57.9 32 0.00069 29.7 5.9 46 98-143 24-71 (194)
490 COG4238 Murein lipoprotein [Ce 57.8 79 0.0017 23.8 7.4 49 97-145 24-72 (78)
491 COG1382 GimC Prefoldin, chaper 57.6 65 0.0014 25.9 7.3 55 65-124 56-110 (119)
492 PF10883 DUF2681: Protein of u 57.5 83 0.0018 24.0 9.1 58 83-140 8-65 (87)
493 PRK13182 racA polar chromosome 57.5 92 0.002 26.3 8.6 57 86-142 87-148 (175)
494 KOG2685 Cystoskeletal protein 57.3 1.1E+02 0.0023 29.7 9.8 61 85-145 49-110 (421)
495 PRK14148 heat shock protein Gr 57.3 46 0.00099 28.7 6.8 63 81-143 11-78 (195)
496 TIGR02231 conserved hypothetic 57.2 93 0.002 29.8 9.6 76 55-131 91-171 (525)
497 TIGR00019 prfA peptide chain r 57.2 1.7E+02 0.0038 27.5 12.0 94 59-152 10-108 (360)
498 KOG0979 Structural maintenance 57.1 1.2E+02 0.0025 32.6 10.7 91 57-154 277-367 (1072)
499 PF10046 BLOC1_2: Biogenesis o 56.9 83 0.0018 23.8 7.6 58 81-138 42-99 (99)
500 TIGR00293 prefoldin, archaeal 56.9 41 0.0009 25.8 6.0 41 93-133 1-41 (126)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.53 E-value=6.7e-15 Score=100.17 Aligned_cols=51 Identities=33% Similarity=0.483 Sum_probs=47.2
Q ss_pred CCchhHHHHHHHHHHHHhHHHHhhhcCCC---CCCCCChhhHHHHHHHHHHHHH
Q 028999 47 PGSKACREKLRRERLNDRFLDLSCILEPG---RPARTDKPAILDDAIRVLNQLR 97 (200)
Q Consensus 47 ~~sH~~~ER~RRekiNe~F~~Lr~lLpP~---~~~K~dKasIL~dAI~YIk~L~ 97 (200)
+.+|+.+||+||++||++|.+|+.+||++ ...|.||++||..||+||++|+
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999876 4578999999999999999996
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.51 E-value=2.6e-14 Score=97.35 Aligned_cols=56 Identities=32% Similarity=0.447 Sum_probs=50.3
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhhcCCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 028999 45 SRPGSKACREKLRRERLNDRFLDLSCILEPGR-PARTDKPAILDDAIRVLNQLRTES 100 (200)
Q Consensus 45 ~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~-~~K~dKasIL~dAI~YIk~L~~~v 100 (200)
.++.+|+.+||+||++||+.|.+|+++||+.. ..|.||++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999996652 479999999999999999999875
No 3
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.50 E-value=5.5e-14 Score=130.74 Aligned_cols=85 Identities=24% Similarity=0.340 Sum_probs=70.3
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAE 120 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~--~~K~dKasIL~dAI~YIk~L~~~v~~L~~---~~~~L~~ei~~L~~e 120 (200)
+|..|+++|||||++||++|.+|+.|||.+. ..|..|.+||..+++||+.|++..++..+ ....|+..+++|..+
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~r 312 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALR 312 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Confidence 6799999999999999999999999997764 24778999999999999999998774333 445677777888888
Q ss_pred HHHHHHHHHH
Q 028999 121 KNELREEKLI 130 (200)
Q Consensus 121 knELr~Ek~~ 130 (200)
+.||..+...
T Consensus 313 ieeLk~~~~~ 322 (411)
T KOG1318|consen 313 IEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHH
Confidence 8887776653
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.46 E-value=1.4e-13 Score=92.17 Aligned_cols=51 Identities=31% Similarity=0.444 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHhHHHHhhhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 028999 51 ACREKLRRERLNDRFLDLSCILEPGR-PARTDKPAILDDAIRVLNQLRTESQ 101 (200)
Q Consensus 51 ~~~ER~RRekiNe~F~~Lr~lLpP~~-~~K~dKasIL~dAI~YIk~L~~~v~ 101 (200)
+..||+||++||++|..|+++||++. ..|.||++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999997653 5789999999999999999998875
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.18 E-value=7.1e-11 Score=100.91 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGRP-----ARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 120 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~-----~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~e 120 (200)
|+..|-..|++|||.||..+..|..|||-|.+ .|++||.||.++|+||.+|+.+..+-+++..+|+.++..|+.=
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iI 141 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKII 141 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999976642 3889999999999999999999999999999999998888887
Q ss_pred HHHHH
Q 028999 121 KNELR 125 (200)
Q Consensus 121 knELr 125 (200)
+++..
T Consensus 142 k~~YE 146 (229)
T KOG1319|consen 142 KVNYE 146 (229)
T ss_pred HHHHH
Confidence 77753
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=99.08 E-value=1e-09 Score=95.90 Aligned_cols=84 Identities=26% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 42 DSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTD-KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 120 (200)
Q Consensus 42 ~~~~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~d-KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~e 120 (200)
.+.+.+.+||.-||+||+.|.++|..|+..||.+...+.. -++||.+|++||+.|+..........+.|..+-..|+++
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~r 134 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKAR 134 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999776654444 599999999999999998888877777777777777777
Q ss_pred HHHHH
Q 028999 121 KNELR 125 (200)
Q Consensus 121 knELr 125 (200)
+++|.
T Consensus 135 l~ql~ 139 (232)
T KOG2483|consen 135 LEQLS 139 (232)
T ss_pred HHHhc
Confidence 77665
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.55 E-value=3.6e-08 Score=86.92 Aligned_cols=60 Identities=28% Similarity=0.344 Sum_probs=51.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhHHHHhhhcCCC------CCCCCChhhHHHHHHHHHHHHHHHHH
Q 028999 42 DSCSRPGSKACREKLRRERLNDRFLDLSCILEPG------RPARTDKPAILDDAIRVLNQLRTESQ 101 (200)
Q Consensus 42 ~~~~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~------~~~K~dKasIL~dAI~YIk~L~~~v~ 101 (200)
..+.|+..|-..||+||++||+++.+|+.||+-. ..+|.+||-||.-|++|+++|+....
T Consensus 28 ~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 28 TRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3356899999999999999999999999999432 23689999999999999999998543
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.44 E-value=2.2e-07 Score=92.95 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHHHhHHHHhhhcCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 028999 47 PGSKACREKLRRERLNDRFLDLSCILEPGRP---ARTDKPAILDDAIRVLNQLRTE 99 (200)
Q Consensus 47 ~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~---~K~dKasIL~dAI~YIk~L~~~ 99 (200)
+..|+..||||||++|.-|+||+++| |.+. .|.||-+||..||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mv-p~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMV-PTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhh-hcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 78999999999999999999999999 5555 7999999999999999998885
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.35 E-value=4.7e-07 Score=91.46 Aligned_cols=76 Identities=29% Similarity=0.424 Sum_probs=68.2
Q ss_pred CCccCCCCCCCCCCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 34 NTRKRARSDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 34 ~~~kR~r~~~~~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~ 111 (200)
-+.+|..+| ..+|..||..||+=|..|||++.+|+.+| |+...|..|.+.|..||+||++|+...+.++.++..++
T Consensus 265 ~Pi~rl~~G-~~kRtAHN~IEKRYRsSINDKI~eLk~lV-~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 265 KPIKRLLPG-GEKRTAHNIIEKRYRSSINDKIIELKDLV-PGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CchhhcCCC-CcccchhhHHHHHhhcchhHHHHHHHHhc-CccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 456777666 67899999999999999999999999999 54567999999999999999999999999999888776
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.26 E-value=7.3e-07 Score=81.10 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=56.3
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei 114 (200)
|+.--|+-||+|=.-||-.|..||+|||-...-|.+||+||..+.+||.+|+.+--+|--+|.+|+..+
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~ 128 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLK 128 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHH
Confidence 455678899999999999999999999554457899999999999999999987666665555544433
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.06 E-value=1e-05 Score=71.97 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=51.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028999 41 SDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 41 ~~~~~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~ 104 (200)
.-..+|+..--.+||+|=.|+|+.|+.|.----+.-....-|+.||-.||+||..|+.-++++.
T Consensus 113 s~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~ 176 (284)
T KOG3960|consen 113 STSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQD 176 (284)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345677788899999999999999999877633223578999999999999999987655433
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.76 E-value=6.8e-05 Score=57.15 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=45.3
Q ss_pred HHHHHHhHHHHhhhcCCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRP----ARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEE 113 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~----~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~e 113 (200)
-|.|||.+..|+.+||..+. .|.+-+-+|.+++.||+.|+.+|+.|.+...+|.+-
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999966432 334444599999999999999999999888777643
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.72 E-value=3.7e-05 Score=66.09 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=50.0
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHH
Q 028999 45 SRPGSKACREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTESQE 102 (200)
Q Consensus 45 ~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~--~~K~dKasIL~dAI~YIk~L~~~v~~ 102 (200)
..+..++.+||.|=..+|..|.+||..||..- ..|.+|+.+|.-||.||..|..-++.
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~ 167 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLAT 167 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcc
Confidence 35677888899999999999999999997654 35799999999999999999886543
No 14
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.45 E-value=0.0015 Score=48.87 Aligned_cols=60 Identities=28% Similarity=0.493 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..||+-|.=|+-++++|+..|..|.+++..++....+|.+|+..||.|-...+..|.++
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999988888777764
No 15
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.0026 Score=47.11 Aligned_cols=60 Identities=27% Similarity=0.492 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..||+-|.=|+-++++|++.|.+|..+..++......|+.|+..||.|-...+..++++
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999988888777764
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.29 E-value=0.0034 Score=46.00 Aligned_cols=45 Identities=36% Similarity=0.567 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.||+-|..|+.++++|+.+|..|.++...|+.+.+.|++|....+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444444444444444444444443333
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.20 E-value=0.0062 Score=44.64 Aligned_cols=56 Identities=38% Similarity=0.446 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++.+.+|+.+++.+-.++..|+.++.+|+.+.++|.+++..|+.+.++|+++-..+
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999998888888888888888888766553
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.82 E-value=0.01 Score=49.73 Aligned_cols=61 Identities=30% Similarity=0.475 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 85 ILDDAIRVLNQLRTE---SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 85 IL~dAI~YIk~L~~~---v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
-|.+.|.|+..|+.. .+.++.++..|+.++.+|..++.+|..|+..|+.+...++..++++
T Consensus 81 tl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 81 TLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999974 6677788888888888888888888888888888888887777764
No 19
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=96.54 E-value=0.036 Score=49.61 Aligned_cols=88 Identities=26% Similarity=0.360 Sum_probs=67.2
Q ss_pred CCch-hHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 47 PGSK-ACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 47 ~~sH-~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
+..| ..-||.-|.||+.+..+=-+ .-.|-+-..+-=..|++|.++.+.|..+|+.|++..+.|-.+.+||+
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQta--------RDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~ 131 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQTA--------RDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD 131 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3455 67888889899888765322 23344444454566899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 126 EEKLILKADKEKLEQQL 142 (200)
Q Consensus 126 ~Ek~~Lk~e~e~L~~ql 142 (200)
.+...+..++-.|.+|-
T Consensus 132 ~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 132 SELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 99888888888886543
No 20
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.43 E-value=0.0024 Score=61.77 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=51.0
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~--~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
||...+.+||.|=..||+.|.||+.+.=-.. .....|..||..|+..|-.|+++|.+- .|.-+...|+...+
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER-----NLNPKaaclkRRee 599 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER-----NLNPKAACLKRREE 599 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc-----cCChhhhhhhccch
Confidence 5677788888888899999999999862211 112568889999999999999988531 23344445554433
No 21
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.11 E-value=0.064 Score=40.30 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI-------LKADKEKLEQQLKVM 145 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~-------Lk~e~e~L~~qlk~~ 145 (200)
.+.+.+|+.+|+..-++..-|+.+|++|+.+.+.|.+|... |..+.+.|+++...+
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988888766 666666666665544
No 22
>smart00338 BRLZ basic region leucin zipper.
Probab=96.03 E-value=0.028 Score=39.36 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
.||..|+.+++.|+.+|..|..++..|..++..|++++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888888888888888888888877777777776643
No 23
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=95.85 E-value=0.042 Score=38.39 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
.||.+|+.++..|+.+|..|..++..|+.+...|..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666666666666665555555555554443
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.77 E-value=0.077 Score=41.55 Aligned_cols=52 Identities=29% Similarity=0.424 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
+|=..+.+|+.....|..++.+|+..+.+|-+||+.|+.|.+.|...|....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667777777777778888888888888888888888887777653
No 25
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.75 E-value=0.0095 Score=49.99 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=45.5
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~ 98 (200)
.+.-|+.+||+|=..||+.|..|+.++|---..|.+|.-.|.-|..||-.|-.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 45679999999999999999999999954334688899999999999998854
No 26
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.75 E-value=0.12 Score=49.89 Aligned_cols=55 Identities=15% Similarity=0.336 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.-+.+-+..+.+|+++.+.|+.+.+.|.+...++.++...|+.|+..|+.|++.+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566667777777777766666777777777778888888888888654
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.31 E-value=0.14 Score=40.49 Aligned_cols=51 Identities=25% Similarity=0.398 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+|=..+.+|+.....|..++.+|+..+.+|-+||..|+.|.+.|...|...
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677777777778888888888888888888888888888877765
No 28
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=95.31 E-value=0.18 Score=50.23 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|+...-.-+.+|+.+.++|.++.+++...+++|++++..-+.|...||.++|..+.|++++
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 3333445677888888889999999999999999999988999999999999999999886
No 29
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=95.20 E-value=0.16 Score=48.92 Aligned_cols=60 Identities=25% Similarity=0.365 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA----------------------EKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~----------------------eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
|..-|--+++|+.+++.|..+|+.|.+|.+.|++ +..+|.+|.+.|+..+..|+.||+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444566778888888888888777777766655 445555556666666666667775
Q ss_pred Hh
Q 028999 144 VM 145 (200)
Q Consensus 144 ~~ 145 (200)
.+
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
Confidence 54
No 30
>PRK11637 AmiB activator; Provisional
Probab=95.18 E-value=0.33 Score=45.23 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
-+.++...|..|..++..+......++.++..+..+++++..+...++.+++.++.+|+.
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666666666666666666666666666666555554
No 31
>PRK04406 hypothetical protein; Provisional
Probab=94.97 E-value=0.47 Score=34.95 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
+..|..++..|+....-++.-|.+|...+.+.+.+...|+.++..|.++++++.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346777888888888888888888888888888888888889999988888874
No 32
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.79 E-value=0.13 Score=42.20 Aligned_cols=54 Identities=39% Similarity=0.545 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEK--NELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ek--nELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
|.+|+.++..|+.++..|..++..|.... .||+++...|+.+++.|+..|..+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777765 6788888899999999998888764
No 33
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.70 E-value=0.32 Score=38.84 Aligned_cols=47 Identities=34% Similarity=0.564 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
+..|..|..++..++.+...|+.++..|..+++++++|...|-.+.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555554443333
No 34
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.65 E-value=0.3 Score=38.24 Aligned_cols=50 Identities=34% Similarity=0.419 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+-|.+|..++..|-.+...|+..+.+|-.|..+|+-|+..|+..+..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888888888888889999999999999999999999888887766
No 35
>PRK02119 hypothetical protein; Provisional
Probab=94.65 E-value=0.65 Score=33.96 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
+..+..++..|+....-.+.-+.+|...+.+.+.+...|+.++..|.++++.+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777888888888888888888888888888888899999999999998874
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=0.58 Score=49.61 Aligned_cols=83 Identities=27% Similarity=0.385 Sum_probs=52.8
Q ss_pred HHHhHHHHhhhcCCCCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCILEPGRPARTDKP-AILDDAIRVLNQLRTESQELKET----------NEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 61 iNe~F~~Lr~lLpP~~~~K~dKa-sIL~dAI~YIk~L~~~v~~L~~~----------~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+++++.+||..+ +..-....|. +=+.+.+..|..|..++.+++.. ...+++.|.+++.|+++++++..
T Consensus 804 ~ee~~~~lr~~~-~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~ 882 (1293)
T KOG0996|consen 804 LEERVRKLRERI-PELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAA 882 (1293)
T ss_pred HHHHHHHHHHhh-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566677777777 3221111222 12345566777777777777754 24456778889999999886556
Q ss_pred HHHHHHHHHHHHHHHh
Q 028999 130 ILKADKEKLEQQLKVM 145 (200)
Q Consensus 130 ~Lk~e~e~L~~qlk~~ 145 (200)
. |++++.|+.++..+
T Consensus 883 K-k~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 883 K-KARIKELQNKIDEI 897 (1293)
T ss_pred H-HHHHHHHHHHHHHh
Confidence 6 78888888777654
No 37
>PRK00846 hypothetical protein; Provisional
Probab=94.50 E-value=0.64 Score=34.69 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
.|..++..|+....-.+.-|.+|...+.+.+.+...|+.++..|..+|+++.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777777777777778888888888888888888888888898873
No 38
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.44 E-value=0.46 Score=35.35 Aligned_cols=51 Identities=31% Similarity=0.412 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.+.+.+|+..+++.-....-|+-+|.+|+...|.|..|.+.++...|.|++
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 356778888888888888889999999998888888888766666666653
No 39
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.37 E-value=0.31 Score=34.96 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
|...+.+|+....-++..+.+|...+.+...+...|+.++..|..+++.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777777777777777888888888888888888888888875
No 40
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.29 E-value=0.54 Score=34.06 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|.+|-...++|+.+|..|.++...+..|...|.+.+....+.+|.+=..|++|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444555555555555555555555555555555555555555555544
No 41
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.28 E-value=0.89 Score=41.18 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHhhhc
Q 028999 56 LRRERLNDRFLDLSCIL 72 (200)
Q Consensus 56 ~RRekiNe~F~~Lr~lL 72 (200)
.|...|...+..|+.+.
T Consensus 184 ~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 184 ERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666667777777766
No 42
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.16 E-value=0.51 Score=39.63 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=36.1
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 56 LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 56 ~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
+.+..+..++..+..-+ - .+-..+..--.-|..|+.++..|+..+..|..++++....+..|+||...|+.+.
T Consensus 88 r~~~el~~~L~~~~~~l-~------~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 88 RSKGELAQQLVELNDEL-Q------ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc-c------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444 1 1112233333456666666777776666666666666666666677766666666
Q ss_pred HHHHHHHHH
Q 028999 136 EKLEQQLKV 144 (200)
Q Consensus 136 e~L~~qlk~ 144 (200)
.-++..+..
T Consensus 161 ~~~e~k~~~ 169 (194)
T PF08614_consen 161 NMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555544
No 43
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.16 E-value=0.45 Score=42.58 Aligned_cols=52 Identities=31% Similarity=0.495 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..+++...+++..+++.|..+..+|..+.++++++...|..|+.+|+..++.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777888888888888888888888888888887777766654
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.13 E-value=0.41 Score=41.33 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=43.4
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 55 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
|.|=.++...+.+|++-| -. |-++.-+...+|+..+++.+.....|+++.++|+.++.+++.|+..|+++
T Consensus 92 ~~rlp~le~el~~l~~~l-~~---------~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKL-NN---------IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHH-HH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467788888888777 21 11222344445555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 028999 135 KEKLEQQL 142 (200)
Q Consensus 135 ~e~L~~ql 142 (200)
++.++...
T Consensus 162 ~~~~~~~~ 169 (206)
T PRK10884 162 LDDKQRTI 169 (206)
T ss_pred HHHHHHHH
Confidence 55555443
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.06 E-value=0.23 Score=33.35 Aligned_cols=39 Identities=31% Similarity=0.484 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 103 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
|+...+.|...-+.|+.+..-|..|+..|++++..|...
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555555555555555555555443
No 46
>PRK00295 hypothetical protein; Provisional
Probab=94.00 E-value=0.94 Score=32.64 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
|..++..|+....-++.-|.+|...+.+.+.+...|+.++..|..+++.+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666667777777777777777888888888888888774
No 47
>PRK02793 phi X174 lysis protein; Provisional
Probab=93.97 E-value=1 Score=32.73 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
.+..++..|+....-.+.-|.+|...+.+.+.+...|+.++..|..+++.+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3666777777777777777788888888888888888888888888888873
No 48
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=93.95 E-value=0.85 Score=38.66 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHhhhc
Q 028999 56 LRRERLNDRFLDLSCIL 72 (200)
Q Consensus 56 ~RRekiNe~F~~Lr~lL 72 (200)
-|++-.|.+|.+|---|
T Consensus 59 vr~~ly~~~F~ELIRQV 75 (189)
T PF10211_consen 59 VREELYSQCFDELIRQV 75 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777888876666
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.95 E-value=1.4 Score=38.09 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 117 LKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 117 L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
|+.+..+|++|...++++.+.|++++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333433333
No 50
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.57 E-value=0.84 Score=33.34 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+-|.+|..+-+.|....-.+...|+.|++...++..+...|+..++.++..+..+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999888777778888888888887777777777777777666554
No 51
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.56 E-value=1.3 Score=32.01 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++.|..+++.|-..++.|+.+...|+.+...+..|...|....+--.+.+.+|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999988888888888887
No 52
>PRK11637 AmiB activator; Provisional
Probab=93.55 E-value=0.9 Score=42.31 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+..+...++.++..+..+++++..+...++.++..++.++..
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444555555544443
No 53
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=0.76 Score=41.44 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+-+.|.++-.-.+.++.+++.|....+.++.++.+++.+++++..|...|+.+|+.|+..+..
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555566666666666666666666666666666666666666666665544443
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.42 E-value=1.3 Score=40.37 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=43.6
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 55 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
+.|.+.|+..+..|+.+.... ..-..+.|..+-+=|..+..++.........++.+..+++..+++..++++.+..+
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~---~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~ 254 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDEL---EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTE 254 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776332 12235555555555555555555555555555555555555555555555544444
Q ss_pred HHHHHH
Q 028999 135 KEKLEQ 140 (200)
Q Consensus 135 ~e~L~~ 140 (200)
|..++.
T Consensus 255 I~~ae~ 260 (312)
T smart00787 255 IAEAEK 260 (312)
T ss_pred HHHHHH
Confidence 444443
No 55
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=93.41 E-value=0.14 Score=43.18 Aligned_cols=43 Identities=35% Similarity=0.466 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
++....+--+.|.-|+.|+ .|++.|+.+.++||-|+.+|.+++
T Consensus 5 ~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 5 FESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444 334444444444444444443333
No 56
>PRK04325 hypothetical protein; Provisional
Probab=93.36 E-value=1.3 Score=32.39 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
..+..++..|+....-++.-|.+|...+.+.+.+...|+.++..|..+++.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777777777777888888888888888888888888888888874
No 57
>PRK00736 hypothetical protein; Provisional
Probab=93.34 E-value=1.4 Score=31.69 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 97 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
..++..|+....-++.-|++|...+.+...+...|+.++..|..+++.+.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556555566666666666777777777777778888888887763
No 58
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.30 E-value=0.056 Score=53.20 Aligned_cols=60 Identities=30% Similarity=0.385 Sum_probs=44.8
Q ss_pred CccCCCCCCCCCC----CchhHHHHHHHHHHHHhHHHHhhhcC--CCCCCCCChhhHHHHHHHHHH
Q 028999 35 TRKRARSDSCSRP----GSKACREKLRRERLNDRFLDLSCILE--PGRPARTDKPAILDDAIRVLN 94 (200)
Q Consensus 35 ~~kR~r~~~~~r~----~sH~~~ER~RRekiNe~F~~Lr~lLp--P~~~~K~dKasIL~dAI~YIk 94 (200)
+|||.|....-++ .++.-=-||-||+||.-+.-|.+||| ++.++|.||.|||-=++.|++
T Consensus 10 srkRrrp~qk~rpp~~a~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 10 SRKRRRPLQKQRPPPKALTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhhccCCccccCCCccccccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3555554443332 34444557889999999999999994 345689999999999999986
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.22 E-value=0.53 Score=42.44 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+...=.-|..|+.+...++.+.+.|..++.++-.+.++++.+...+++++.+|+.+++..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677788888888888888888888888888888888888888888888887765
No 60
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.07 E-value=1 Score=38.52 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|..+=++.|+.|+.++.+++..-......+.++.+|...|.+-...+..+++.|+.+|+.
T Consensus 21 IT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 21 ITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666778899999999998887766666666667777666666666666666666666554
No 61
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=92.92 E-value=1.2 Score=36.56 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++.++. -.+|+.++..|..+++.|+.|..+++.|...++...+.|..-.-
T Consensus 70 ~KRv~Q-k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 70 VKRVQQ-KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344443 34677888888888888888888888888888888888877443
No 62
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=92.88 E-value=1.2 Score=31.00 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
+.|+..+..|..+...|+.++..|+.++..|..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444445555555555555555443
No 63
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.86 E-value=1 Score=35.57 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+-|.+|..++..|-.+...|+..+.+|-.|...|+-||..|+..++.+++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55677888888888888888888888888888899999888888887744
No 64
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.85 E-value=0.95 Score=43.85 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
-|.+.=.-..+|+++++.|+.+.+.+..+..++...+++|.+|+..|+.+.+-+..+.-
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 34555566778888888888888877788888888899999999999988876665543
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.82 E-value=1.2 Score=42.00 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=54.4
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 57 RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
++..+..++.+|+..+ - .+-+-|.+.++-+..|+.++++|+.....+.+++.+|..+++++..++..+..+..
T Consensus 331 ~~~~~~~~i~el~~~i-~------~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 331 EFNEQSKKLLELKNKI-S------TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666 1 11222677888888899999999888888888888888888888888877776665
Q ss_pred HH
Q 028999 137 KL 138 (200)
Q Consensus 137 ~L 138 (200)
..
T Consensus 404 ~~ 405 (562)
T PHA02562 404 HR 405 (562)
T ss_pred HH
Confidence 54
No 66
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=92.51 E-value=1.2 Score=34.90 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+++=+|+|+-..++ .|...+..|+++++.+..+..+++.+...++.++..|..++
T Consensus 63 LaQl~ieYLl~~q~---~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 63 LAQLSIEYLLHCQE---YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677888877665 34455566666666666666666666666666666665554
No 67
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.47 E-value=0.68 Score=42.11 Aligned_cols=16 Identities=31% Similarity=0.133 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQQLKV 144 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk~ 144 (200)
..++.+++...++|..
T Consensus 116 ~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 68
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.28 E-value=2.1 Score=34.15 Aligned_cols=65 Identities=29% Similarity=0.336 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL---KADKEKLEQQLKV 144 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L---k~e~e~L~~qlk~ 144 (200)
..-.+++..=-.-|+++..++..|+.++..|..+-+.+..|+-.|..++..+ ..++..|+.+++.
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEE 79 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777777777777777766666666666665555333 3444444444444
No 69
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.15 E-value=2.2 Score=35.06 Aligned_cols=63 Identities=27% Similarity=0.441 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
.+.++.-+..+++....+..++..+..++.........++++...++.+.+++..+...+...
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888888888899999999999999999999999999999999988887555
No 70
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.14 E-value=1.8 Score=35.56 Aligned_cols=44 Identities=34% Similarity=0.463 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.-+.++..|++++..|+.+++.|..|...+..+++.|.++++.+
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677777777777777777777777777776666554
No 71
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.14 E-value=0.64 Score=31.19 Aligned_cols=37 Identities=38% Similarity=0.487 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
|+..-+.|+...+.|..+-+.|..|+..|+.|...|+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 72
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.09 E-value=1.2 Score=37.58 Aligned_cols=54 Identities=26% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+.-...|+.+.+.|+.++..|+.+++.|..+++.|..+...++.+.+-|-+-+.
T Consensus 96 ~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 96 NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888888888888888888888888888777777665443
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.05 E-value=1.1 Score=39.00 Aligned_cols=6 Identities=67% Similarity=1.769 Sum_probs=3.8
Q ss_pred ccccCC
Q 028999 179 WQYLPP 184 (200)
Q Consensus 179 wq~~pp 184 (200)
|+|+|.
T Consensus 214 W~~l~~ 219 (251)
T PF11932_consen 214 WQWLPD 219 (251)
T ss_pred CeECCH
Confidence 666665
No 74
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=91.93 E-value=1.8 Score=30.58 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
|.+|-.+|+.|.....+|..++..|+.+....++|-.+...-++.+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566667777777666666666666666666666665555444443
No 75
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.87 E-value=0.83 Score=40.50 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
-=+..+-+..+..|.+|++|++.+..++..|+.|...|+++..+|...++-+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667777777778888888888888888888888888888888777766
No 76
>smart00338 BRLZ basic region leucin zipper.
Probab=91.68 E-value=2.3 Score=29.53 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
.|+.++..|..+..+|+.+...|..++..|.++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 77
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.49 E-value=2.5 Score=35.08 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++++.+...|+.|+++|+++|+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 78
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.43 E-value=1.3 Score=35.25 Aligned_cols=49 Identities=29% Similarity=0.353 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+=.++..|+.....|..++..|++.+.+|-+|+..|+-|.++|..-|-.
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4456677777788888899999999999999999999999999886654
No 79
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.42 E-value=2 Score=31.12 Aligned_cols=52 Identities=29% Similarity=0.380 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEK-------NELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ek-------nELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|..|+.....+...++..+.+.+.|..|. .....++..|+.|++.|.++++.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444443 45566777788888888777765
No 80
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.37 E-value=2.6 Score=30.58 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
+.+-+...+.....|..+++.....+...-.+.++|++|+..|+.|.+.+.
T Consensus 17 ~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 17 LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444555556666666666677777778888888888887766654
No 81
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.33 E-value=1.9 Score=34.20 Aligned_cols=59 Identities=36% Similarity=0.463 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 028999 87 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN----ELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 87 ~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn----ELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++|.-|..|+.+.+.++.....|+.+....+..+. .+..++..|..+++.++..+..+
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777887777777777666666544444333 23344455555555555444443
No 82
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=91.26 E-value=3.7 Score=29.47 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
.+.....+..+...++.++++++.+.++|+.|...|.. .++++.--
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~A 67 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHH
Confidence 33445555556666666666666666666666665543 44454433
No 83
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=91.23 E-value=1.8 Score=41.37 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=58.5
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTE---------------SQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 57 RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~---------------v~~L~~~~~~L~~ei~~L~~ek 121 (200)
+-..|.+.+.+|...+ - .-.++.+.+..-+.||..+... +.++.+......+++.++..++
T Consensus 72 ~~~~l~~~l~~l~~~~-~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 72 RLAELRKQIRELEAEL-R---DLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777666 2 1256777777778888877642 3445555566667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 122 NELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
.++..+...++.++++|+++|..++
T Consensus 148 ~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 148 REAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777777777788877776654
No 84
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=91.22 E-value=2 Score=34.22 Aligned_cols=62 Identities=27% Similarity=0.357 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAM 147 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~ 147 (200)
+.+....+..|..++..|.+.|-.++.++.+++.++.++.++...|+.+...++++++.++.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566667777777778787778888888888888888889999999999888887743
No 85
>COG5570 Uncharacterized small protein [Function unknown]
Probab=91.17 E-value=0.74 Score=32.43 Aligned_cols=46 Identities=33% Similarity=0.451 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 97 RTESQELKETNEKLQEEIKSLK-------AEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~-------~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
...+..|++....|+++|.+-. -.+.+|...+..||.+||+|..|+
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445556666666666654433 257788889999999999998753
No 86
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=90.86 E-value=2.3 Score=37.98 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+|....+.....+++..++-+....++...+.+|..|+..|+.+++.|++++..
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444
No 87
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.85 E-value=3.6 Score=36.13 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
......=+..|+.++++.+.+.+.++.+...|+.+..++.+|-.+|..|-.+|+.|+..
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 34444556667777777777777777777777777777777777777777778777753
No 88
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=90.81 E-value=0.76 Score=31.17 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.-...+.+|..++.+|..++..|+.++..|++
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555566666666666666666666554
No 89
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=90.72 E-value=4.5 Score=38.02 Aligned_cols=87 Identities=28% Similarity=0.387 Sum_probs=53.4
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA----EK-NELREEKLILK 132 (200)
Q Consensus 59 ekiNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~----ek-nELr~Ek~~Lk 132 (200)
+.|-++|.+|..+| .|...+..++..-|++-..+|..+-....+++...+.|..--.-|.. |. ....+|...++
T Consensus 10 ~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~ 89 (363)
T COG0216 10 ESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELE 89 (363)
T ss_pred HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45778999999988 22222344565566666555555555555554444443332222221 22 22577889999
Q ss_pred HHHHHHHHHHHHh
Q 028999 133 ADKEKLEQQLKVM 145 (200)
Q Consensus 133 ~e~e~L~~qlk~~ 145 (200)
.+++.|+.+|+.+
T Consensus 90 ~~~~~le~~L~~l 102 (363)
T COG0216 90 AKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999988
No 90
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.65 E-value=1.2 Score=36.49 Aligned_cols=53 Identities=36% Similarity=0.518 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK--LILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek--~~Lk~e~e~L~~qlk~~ 145 (200)
+..|..++.+|+.+...|..+++.|+.++..|..+. ..|..+++.|++++..+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443332 34444444454444443
No 91
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=1.5 Score=41.12 Aligned_cols=42 Identities=48% Similarity=0.493 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 104 KETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 104 ~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+++.+.++.+...|++-.+||+.-++.|+.++++|+||+..+
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555666666666666665554
No 92
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.60 E-value=1.3 Score=39.98 Aligned_cols=57 Identities=14% Similarity=0.336 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCC
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM-AMPTGGYM 153 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~-~~~p~g~~ 153 (200)
|+..++.+..+.++++..+..|..+...|.....+-++|.||.+..|+++ ++-|+ ||
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPA-fm 224 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPA-FM 224 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-HH
Confidence 33444444555555555555555555556555666667777777777776 34444 54
No 93
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=90.48 E-value=1 Score=31.28 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
|..|++-..+|+.+.+.-..+....+.++.+|+.||..|+.++++++
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556667766654444556777888889999999988888765
No 94
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=90.46 E-value=1.5 Score=39.15 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
.+++.++..|+++|+.|+.++.+|+.|+..|++
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777766666655
No 95
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=90.41 E-value=0.26 Score=43.73 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~-~~~K~dKasIL~dAI~YIk~L~~ 98 (200)
++..=|.+||.|=-.||+.|..||.+||.. ...|..|...|.-|-.||-.|..
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 567778999999999999999999999632 34689999999989999887754
No 96
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.38 E-value=2.9 Score=36.29 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 115 KSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+.|+.....+......++.+++.|++|+..
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444445444444
No 97
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=90.34 E-value=2.4 Score=29.69 Aligned_cols=42 Identities=38% Similarity=0.518 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.++.+...|+.++.+++.+..+|+.+...|+.+.+.++...+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 444444455555555555555555555555545555555444
No 98
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.22 E-value=6.7 Score=31.37 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=6.0
Q ss_pred HHHHhHHHHhhh
Q 028999 60 RLNDRFLDLSCI 71 (200)
Q Consensus 60 kiNe~F~~Lr~l 71 (200)
-||..+..++-+
T Consensus 6 yiN~~L~s~G~~ 17 (151)
T PF11559_consen 6 YINQQLLSRGYP 17 (151)
T ss_pred HHHHHHHHCCCC
Confidence 355555554433
No 99
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.22 E-value=2 Score=42.94 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
.-..-|+.|..+++.|+.+|..|+.++.+|+.++.+|+.+...+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777777777777777777776666655433
No 100
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=90.11 E-value=0.13 Score=51.84 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=64.3
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhhcCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 45 SRPGSKACREKLRRERLNDRFLDLSCILEPGR----PARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 120 (200)
Q Consensus 45 ~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~----~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~e 120 (200)
.+.++|..+|.+||..+.-+|..|-++. .+. .-|+.++.-+...+.||..+..+...+.++-..|..++.+|++-
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~-Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~ 728 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLS-SNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAV 728 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhc-cCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHH
Confidence 5789999999999999999999999887 432 23677777899999999998888777777777777777777666
Q ss_pred HHHHHH
Q 028999 121 KNELRE 126 (200)
Q Consensus 121 knELr~ 126 (200)
++-++.
T Consensus 729 ~~~~~q 734 (856)
T KOG3582|consen 729 ISACQQ 734 (856)
T ss_pred HHHhhc
Confidence 665443
No 101
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.06 E-value=2.5 Score=37.52 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=54.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.+-.+||.=.+.-=...+.++.+|++++..+..++..|+.|++.|+.+|.+|.-.+--|+.
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667788877777788999999999999999999999999999999999999888877765
No 102
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.88 E-value=2.8 Score=36.32 Aligned_cols=40 Identities=35% Similarity=0.433 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
+..+..+...|..++..|++|+..|..+.+.|+.+.+.++
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 3444455556666667777777777777777776666653
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.76 E-value=3.5 Score=36.25 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei 114 (200)
-.+|.+++++.+.|..+.....+++
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655544443333
No 104
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.63 E-value=3.5 Score=37.56 Aligned_cols=37 Identities=38% Similarity=0.475 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
-+..|+.+...|..+...|+.+..+|.+|+.+|..|.
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333333333333333
No 105
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.48 E-value=2.4 Score=32.80 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 97 RTESQELKETNEKL--QEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 97 ~~~v~~L~~~~~~L--~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
..+++.++.+.+.| ..++..|+.++.+++-+...+..+++-+.++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444443 3344444444444444444444444444333
No 106
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=89.44 E-value=3.4 Score=34.33 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 117 LKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 117 L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+..|+.+|++|....+.|++.|+.|.+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=89.42 E-value=2.6 Score=37.72 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 101 QELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 101 ~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+|.+||++|++++.+|+++.+.+ ...|+.|.++|++.|...
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCc
Confidence 345566667766666554444432 223677777777755543
No 108
>PRK09039 hypothetical protein; Validated
Probab=89.27 E-value=3 Score=38.33 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
+.+++-.-|..|+.+++.|+.+...|+.++..++.+..+.+.....|+.+++.+
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667778888888888777777777777776666666666666555554
No 109
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=89.19 E-value=2.7 Score=31.50 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 103 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|..+...||..+..|...+.+.++|+..|+.|.+-|++=+..
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444455555555555555544444
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.98 E-value=1.3 Score=31.13 Aligned_cols=31 Identities=39% Similarity=0.456 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
.+++.++++|+.+++.++.+.++|+.++..|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555
No 111
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.89 E-value=11 Score=30.23 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhc
Q 028999 52 CREKLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lL 72 (200)
.++...|+.+++.+..|.+-+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~ 68 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDI 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 455666777777777766655
No 112
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.78 E-value=1.2 Score=34.50 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+|+.+++.++.+++.|+ ++..+|+.|...|+...+-++...+.
T Consensus 31 ~l~~q~~~~~~e~~~l~-------~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLK-------ARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 34444444444444444 44444444444444444555555544
No 113
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=88.75 E-value=4.1 Score=29.98 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei 114 (200)
++...+++.|+.+|-.|.=.|
T Consensus 3 rEqe~~i~~L~KENF~LKLrI 23 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRI 23 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 444555555555554444333
No 114
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.69 E-value=3.8 Score=35.77 Aligned_cols=39 Identities=33% Similarity=0.563 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++.++|+.|++|+.+|+.+..++ ..++.|.++|...|..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQEL----EQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 34444444444444444444433 2456777777776654
No 115
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.67 E-value=2.7 Score=44.37 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
=+++|+.+|++++..+..|.++..+++.+.-+-++|+...+.++..|...+...+
T Consensus 402 k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444445555555555554443
No 116
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.63 E-value=2.2 Score=42.28 Aligned_cols=59 Identities=34% Similarity=0.464 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 87 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 87 ~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
...-.-+.+|+.+++.|..+.+.+..+++.|+.++.++.+|....+.+.++|+++++-.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788889999999999999999999999999999999999999999999888753
No 117
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.33 E-value=7.7 Score=35.92 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=39.9
Q ss_pred HHHHHHHhHHHHhhh--------cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCI--------LEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 57 RRekiNe~F~~Lr~l--------LpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
|...++....+|--. ++|.. .+.+=+.+|.++-+-.+.|+.++..|+.....++-+++-|+..++
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~-~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEK-ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 446666666665521 12221 233445688899888888888888888766666655555555444
No 118
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.33 E-value=11 Score=32.30 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 128 KLILKADKEKLEQQL 142 (200)
Q Consensus 128 k~~Lk~e~e~L~~ql 142 (200)
..+|+++.+.+.+++
T Consensus 161 i~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 161 ISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 119
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.29 E-value=2.8 Score=37.08 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
+-+|+.+++.|+.+...|+-+++++.-+++++.++...+..+++++-.+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466777777777777777777777777777777777777777776543
No 120
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.25 E-value=4 Score=30.74 Aligned_cols=50 Identities=38% Similarity=0.533 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKA---EKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~---eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.|+.+++.|+.+...+..++..++. +..+|..+...++.++..++.+++.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555565555555555544444 2344444444555555444444443
No 121
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.11 E-value=3.7 Score=40.55 Aligned_cols=50 Identities=32% Similarity=0.456 Sum_probs=20.9
Q ss_pred CChhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLN----QLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 80 ~dKasIL~dAI~YIk----~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+.|+.+|..-++.+. +|......|+.++..|+.++..|..+++..+++..
T Consensus 135 ~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e 188 (546)
T PF07888_consen 135 TTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEME 188 (546)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666655544432 22223333444444444444444444433333333
No 122
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.87 E-value=5.7 Score=35.90 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK-------ADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk-------~e~e~L~~qlk~~ 145 (200)
+..+..-|.+++..+..+..+...|..+|+.-+.|+.-.+.+...|+ .|-|+|+.+|+.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 34444556666666777777777788888888888887777777776 6888888888764
No 123
>PRK09039 hypothetical protein; Validated
Probab=87.75 E-value=4.5 Score=37.23 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+|..|+.+.+.|+.++..|..++..+..+....+.+++.|++.|..
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555544
No 124
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.64 E-value=6.3 Score=35.06 Aligned_cols=43 Identities=33% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
..|..+++.+++...+|..++.+|..++.+|.++...|+.++.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333333
No 125
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.64 E-value=3.4 Score=36.09 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei 114 (200)
+..+.+|+++.++|++++..|+.+.
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544443
No 126
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=87.61 E-value=7.1 Score=33.82 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
...|+..++-....-......-+..+.|...|+.|+..++.++..|+.|+..+..+
T Consensus 128 a~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 128 ANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333345555666666667777777777777777776544
No 127
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=87.59 E-value=5.9 Score=33.61 Aligned_cols=60 Identities=27% Similarity=0.414 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.=|.+++..+.+=+...+.|..-|..|.++.+..+.....|.++..+|..+.+++..+|.
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666777788888888888888888888888888888888888765554
No 128
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.48 E-value=9.2 Score=37.91 Aligned_cols=90 Identities=26% Similarity=0.436 Sum_probs=63.7
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCChhhH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 56 LRRERLNDRFLDLSCILEPGRPARTDKPAI-LDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 56 ~RRekiNe~F~~Lr~lLpP~~~~K~dKasI-L~dAI~YIk~L~~~v~~L~~---~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
.|=+.+.+|+..|..+- .|-.. +.+.++|..+++.+.+.|.. ..+.|+.++..+..+..+.-...+..
T Consensus 297 ~~L~~ve~Rl~~L~~l~--------RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~ 368 (557)
T COG0497 297 NRLEEVEERLFALKSLA--------RKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAI 368 (557)
T ss_pred HHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777775 24444 78999999999999999885 45678888888888888777766655
Q ss_pred HHHH-----HHHHHHHHHhcCCCCCCC
Q 028999 132 KADK-----EKLEQQLKVMAMPTGGYM 153 (200)
Q Consensus 132 k~e~-----e~L~~qlk~~~~~p~g~~ 153 (200)
+... ..+.++|+.+....+-|.
T Consensus 369 R~~~A~~L~~~v~~eL~~L~Me~a~F~ 395 (557)
T COG0497 369 RKKAAKELEKEVTAELKALAMEKARFT 395 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 4333 235677777766555453
No 129
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.41 E-value=6.3 Score=37.80 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr 125 (200)
+..+|+.++++++.+++.+.
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~ 79 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLE 79 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 130
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.35 E-value=6.1 Score=32.42 Aligned_cols=50 Identities=26% Similarity=0.436 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLK-------AEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~-------~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..+.+++.++.....+.+++.++. .+..+++.+...++.+.+++.+.++.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444 44444555555555555555544443
No 131
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=87.14 E-value=4.5 Score=28.76 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=34.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.+|-+.|.++-.+|.+....+.+|+-+...+.. .+++.+.......+.++.+|+.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666666666666666666666555444321 4555666666666666666666664
No 132
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.04 E-value=7.2 Score=30.92 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
|+..++.|+.++..+...+.+|.+++++++
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 133
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.04 E-value=4.8 Score=35.42 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKE 105 (200)
Q Consensus 93 Ik~L~~~v~~L~~ 105 (200)
+..++..++.|..
T Consensus 218 ~~~~r~~~~~l~~ 230 (312)
T PF00038_consen 218 LKELRRQIQSLQA 230 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhh
Confidence 3333333333333
No 134
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.98 E-value=4.2 Score=33.85 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.+.+|+++|+.|+.+...|...||.|.+.|+.++
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567777777777777777777777777776543
No 135
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.94 E-value=4.5 Score=40.36 Aligned_cols=55 Identities=31% Similarity=0.430 Sum_probs=30.9
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 91 RVLNQLRTE----SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~----v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++|++|+.+ ++.|+.+...|++.+..|..+.+.|+.|+......+..|+.+|..+
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445443 3334455555666666666666666666666666666666555554
No 136
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=2.9 Score=41.81 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
..++.|+.+++.|+..++.|+.++..|+.++.+++
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554443
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.84 E-value=7.3 Score=31.98 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+..+..++....+.+..+.+..+..+++.+...++.+.+.+..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 165 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRS 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555333333333333333
No 138
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=86.78 E-value=8 Score=34.91 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=52.4
Q ss_pred HHHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 60 kiNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
.||+-|..|.++- .|. ....+.++|..|-.....++.--..|.........+++..-.++|.|-++...|..+|..
T Consensus 108 ~l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 108 YLNNFFNALQELAKNPD--SEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554 121 235678888888888888888777777777777777777777777777777777666654
No 139
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=86.76 E-value=8.3 Score=34.12 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=15.7
Q ss_pred CCchhHHHHHHHHHHHHhHHH
Q 028999 47 PGSKACREKLRRERLNDRFLD 67 (200)
Q Consensus 47 ~~sH~~~ER~RRekiNe~F~~ 67 (200)
+.......++||..|-+.|.+
T Consensus 140 ~ka~~~~~~~rR~~i~e~I~~ 160 (254)
T PF15458_consen 140 KKAEREQKRRRREEIEEAIND 160 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344566777888889888887
No 140
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=86.72 E-value=1.1 Score=40.47 Aligned_cols=54 Identities=24% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHH
Q 028999 45 SRPGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 45 ~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~-~~~K~dKasIL~dAI~YIk~L~~ 98 (200)
.|+..-+.+||+|=..||..|..|+..+|-. ...|.+|-..|.-|-.||.-|-.
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHH
Confidence 3567778999999999999999999999543 23578899999999999987644
No 141
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=86.70 E-value=0.92 Score=44.82 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+|+..|+..+++|..+|+.|+.|...|++++.+|-.|+.
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQ 340 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCc
Confidence 344444444444444444444444444444444444333
No 142
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.65 E-value=12 Score=40.24 Aligned_cols=10 Identities=30% Similarity=0.856 Sum_probs=7.8
Q ss_pred CCCccccccc
Q 028999 1 MPLIEFNFCV 10 (200)
Q Consensus 1 ~~~~~~~~~~ 10 (200)
+|.|||.|..
T Consensus 395 LPFIGfTy~~ 404 (1317)
T KOG0612|consen 395 LPFIGFTYTH 404 (1317)
T ss_pred CCeeeeeecc
Confidence 6888998874
No 143
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.47 E-value=7.4 Score=27.50 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..+++|.....+|..++..|..+.+-++.+....|.|-.|-.+-|...
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888888999999999999999999999988888888777766543
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.46 E-value=3.5 Score=38.63 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPT 149 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p 149 (200)
-.+.|.....+++.++..|+.+.+.+..+.+.++. |+++++.+++.+..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKR-------ELIRAKEEVKRIQSVP 66 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCC
Confidence 34445455555555555555555555444444444 4444555555554443
No 145
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.43 E-value=6.7 Score=34.01 Aligned_cols=60 Identities=30% Similarity=0.377 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++..|...=+.|.++++.|+.....|+++.+.|-++-.++..|+..|-++++.|+.+-..
T Consensus 54 s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 54 SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445666666666666666666666666666666666666666666666666666655443
No 146
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=86.40 E-value=6.5 Score=38.72 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=54.2
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
+..||+-|..|..+. -.-..-.-|.+||++|=....++...-..|+........+|...-.++|.|-.+...|..+|-+
T Consensus 110 ~~~L~~ff~s~q~la-~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~ 188 (552)
T COG1256 110 STLLNDFFNSLQELA-SNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRK 188 (552)
T ss_pred HHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777776 2111236677888888888888887777777777777777777777777776666655555544
Q ss_pred H
Q 028999 138 L 138 (200)
Q Consensus 138 L 138 (200)
.
T Consensus 189 ~ 189 (552)
T COG1256 189 V 189 (552)
T ss_pred h
Confidence 3
No 147
>PF14282 FlxA: FlxA-like protein
Probab=86.38 E-value=5 Score=30.97 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEE----IKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~e----i~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
-..|..|+.++..|..+...|... .++-......|..+...|.++|..|+.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888887777776652 2333344445566666666666666555443
No 148
>PHA03011 hypothetical protein; Provisional
Probab=86.33 E-value=8.6 Score=30.60 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
...-++-+..|+.+-.+|-.+..-+..+++.+..=+.+-.+|.--|.+|+++|..++..
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 34456677777777778888887888888888888888888888899999999887654
No 149
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.29 E-value=13 Score=35.78 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHhhh
Q 028999 54 EKLRRERLNDRFLDLSCI 71 (200)
Q Consensus 54 ER~RRekiNe~F~~Lr~l 71 (200)
||.||+.|-+.+..+.-.
T Consensus 110 ~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 110 EREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 367888888888887763
No 150
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.20 E-value=4.2 Score=36.58 Aligned_cols=83 Identities=25% Similarity=0.290 Sum_probs=58.5
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQ-LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 59 ekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~-L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
+.+++.+...+.-+ -.. -...|-.||+.++.-+.. .+..+-..-.+|..++.++..-+.++++|.++...|++|++.
T Consensus 141 del~e~~~~el~~l-~~~-~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASL-SRK-IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555 211 135566788877655444 555565566788888888888889999999999999999998
Q ss_pred HHHHHH
Q 028999 138 LEQQLK 143 (200)
Q Consensus 138 L~~qlk 143 (200)
|..+..
T Consensus 219 L~~~~~ 224 (258)
T PF15397_consen 219 LQAQAQ 224 (258)
T ss_pred HHHhhc
Confidence 888766
No 151
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.14 E-value=10 Score=27.07 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
|..=|+-=..|+.++.+.+..+-.+...+++-.....+|..+...|+.+++.++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555666666666666666666666666666666666666666555543
No 152
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.12 E-value=0.53 Score=47.52 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=40.6
Q ss_pred CCchhHHHHHHHHHHHHhHHHHhhhcCC--CCCCCCChhhHHHHHHHHHHHHHH
Q 028999 47 PGSKACREKLRRERLNDRFLDLSCILEP--GRPARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 47 ~~sH~~~ER~RRekiNe~F~~Lr~lLpP--~~~~K~dKasIL~dAI~YIk~L~~ 98 (200)
|.+-.-+-|-||.|=|+-|.+|..+||- +..+..|||||+-=||-|++ |++
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk 99 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRK 99 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHH
Confidence 4444456688999999999999999952 12367999999999999998 554
No 153
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.00 E-value=5.5 Score=28.50 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
+.|.+|+.++.-++...+.|...+-+...++..|+.+...|...+..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666666666666666666666666666666555
No 154
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=85.95 E-value=6.8 Score=29.39 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
=..|..++..|+.....|-..+..++.|-..|+.||..|+.=|..|-.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888889999999999999999999999999998855
No 155
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.93 E-value=3.7 Score=31.79 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
...++.++.+++.++.+|++++..|+.|+++|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456666777777777777777777777777765
No 156
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.90 E-value=5.6 Score=37.59 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=7.2
Q ss_pred HHHHHHHhHHHHhhhc
Q 028999 57 RRERLNDRFLDLSCIL 72 (200)
Q Consensus 57 RRekiNe~F~~Lr~lL 72 (200)
.+..|...+..|...+
T Consensus 307 ~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 307 KLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 157
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.88 E-value=9.6 Score=40.43 Aligned_cols=88 Identities=24% Similarity=0.339 Sum_probs=52.7
Q ss_pred HHHHHHHHHhHHHHhhhcCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 55 KLRRERLNDRFLDLSCILEPGR----PARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 130 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lLpP~~----~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~ 130 (200)
|.+.+.++..+..+..-+--.. ..--+|..-|...|+ .|+.++..|..+...+.+++.....++...+.+...
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve---k~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE---KLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455566666666665551100 011355555555544 455577778877777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHh
Q 028999 131 LKADKEKLEQQLKVM 145 (200)
Q Consensus 131 Lk~e~e~L~~qlk~~ 145 (200)
|+..++....+|+.+
T Consensus 448 l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 448 LRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766666666555553
No 158
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=85.75 E-value=7.1 Score=36.32 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+|.-+++-+..|+.+++.|..+++.|+.+...+..++.++-.+|.
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667778888888888887777777777776666555444
No 159
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=85.64 E-value=0.75 Score=35.42 Aligned_cols=48 Identities=35% Similarity=0.484 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
+.=+||..|..++..|..++..|..++.+|..++.+++.+...|+..+
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 455889999998888888888888888888888888777666665444
No 160
>PRK04406 hypothetical protein; Provisional
Probab=85.52 E-value=6.7 Score=28.83 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
+.|.+|+.++.-++...+.|...+-+...++..|+.+...|...+..+
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777777777777777777777777776666665444433
No 161
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.49 E-value=5.4 Score=40.21 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
||.+-.+.......++.+|+...++|+.+|.++...++||+.+...-+.|.+.|+..+.....+
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 3444444444444555566666666666666666666666666666666666666655554433
No 162
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=85.42 E-value=5.5 Score=37.03 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
-+.+|..+.+.|+.+...+..+++++-.+|+++..+.
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777765554
No 163
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.39 E-value=4.8 Score=39.09 Aligned_cols=36 Identities=36% Similarity=0.460 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
+-|+.|-.++.+++.+..+|..+.+.|+.|.+.|+.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777777765
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.36 E-value=3.9 Score=36.18 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+|....+.|+.|+.+|+-+++++..+...++..-..+.++|...
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777777777766666666677664
No 165
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=85.30 E-value=13 Score=30.12 Aligned_cols=66 Identities=18% Similarity=0.087 Sum_probs=44.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+...-...+++....|+.++.......+.|+++++.....+..-.+....|+..+..++.+++..
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888877777777777777666666555555566666666666555553
No 166
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.29 E-value=2.8 Score=39.22 Aligned_cols=43 Identities=30% Similarity=0.302 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.++++.|+.+++.|+.++..|..+.+.++.+++.+++|...|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888999999999999999999999998888776664
No 167
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.26 E-value=22 Score=30.12 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCchhHHHH-----HHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 47 PGSKACREK-----LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRV---LNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 47 ~~sH~~~ER-----~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~Y---Ik~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
-++=.|.|| +=|+.+...|.+...+. +.+.+-.+..+++. ..+|+.++..|+.++..|..++.+|+
T Consensus 74 QVTi~C~ERGlLL~rvrde~~~~l~~y~~l~------~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~ 147 (189)
T PF10211_consen 74 QVTIDCPERGLLLLRVRDEYRMTLDAYQTLY------ESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELK 147 (189)
T ss_pred HHHhCcHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567776 33667777777766666 22333333333333 33444455555555554444444443
Q ss_pred H
Q 028999 119 A 119 (200)
Q Consensus 119 ~ 119 (200)
.
T Consensus 148 ~ 148 (189)
T PF10211_consen 148 N 148 (189)
T ss_pred H
Confidence 3
No 168
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.24 E-value=7.6 Score=34.96 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+.+.+++.++.|..|+..|.+....|-.+..+|+..+..
T Consensus 163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3333333334444444443333333333444445444433
No 169
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=85.07 E-value=7.2 Score=30.56 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
|..+++.++.+++.|..+...|+++++.|+++
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444445555555554444444444444443
No 170
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.05 E-value=14 Score=30.91 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
-|++|..++.+....++.|+.|+..|..+.|-+.+....|+.|...|-+.
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666667777777777777777777777777777776543
No 171
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=85.03 E-value=6.6 Score=31.24 Aligned_cols=53 Identities=32% Similarity=0.400 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
-++.++..++.+..+|..|-+..-.+..+++++|.+...+..+...|+.++..
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555543
No 172
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.02 E-value=14 Score=27.49 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..|+.++.+|+.....-..-|.+|...+.|.+-...+++.+...|-..++.+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777777777766566678888888888888888888888888888876
No 173
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=84.96 E-value=9.6 Score=25.71 Aligned_cols=29 Identities=41% Similarity=0.569 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
.|+.+|+.++..|+.+|..|..++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666666666666655555555543
No 174
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=7.3 Score=30.92 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNE-KLQEEIKSLKAEKN--------ELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~-~L~~ei~~L~~ekn--------ELr~Ek~~Lk~e~e~L~~qlk 143 (200)
..+|-+|+.+|-.+.+.-+.+.+ +.+..++++....+ +|+.+...|+.++.+|+++++
T Consensus 41 ~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 41 AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888887775444332 34555555555444 566666666666666666554
No 175
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.82 E-value=11 Score=30.63 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
+-+..|+.++..|+..+..+..+|..|.
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~ 41 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQ 41 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333333
No 176
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.75 E-value=8.9 Score=35.20 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.-++.|+.+++.+....+.+.+++.+|+.+.+++....+.|..+...+.....
T Consensus 48 ~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 48 AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666777777777777777777777777776666666666666555444
No 177
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.73 E-value=9.6 Score=37.72 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=31.2
Q ss_pred CChhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILD----DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 80 ~dKasIL~----dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
++++.+++ .-++-+..++++..+|..+...++.+++++..|++|+.+-..
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45666552 223334445566666777777777888888888887655443
No 178
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.65 E-value=8.4 Score=41.12 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=53.3
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 55 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
...++++++.+..|...+ ... +..|.. |..++.-..+|+.++++|..++..+..++.+++.++..|..+...++.+
T Consensus 849 ~~e~e~~~~eI~~Lq~ki-~el--~~~klk-l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKT-NEL--KSEKLQ-IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 455566677777776656 211 233333 3336777778888888888888888777777777777777776666666
Q ss_pred HHHHHH
Q 028999 135 KEKLEQ 140 (200)
Q Consensus 135 ~e~L~~ 140 (200)
.+++.+
T Consensus 925 ~~~~~~ 930 (1311)
T TIGR00606 925 KEELIS 930 (1311)
T ss_pred HHHHHH
Confidence 655543
No 179
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.57 E-value=7.2 Score=35.68 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELK 104 (200)
Q Consensus 90 I~YIk~L~~~v~~L~ 104 (200)
.++...|+.++..|+
T Consensus 178 ~~~~~~L~~e~~~L~ 192 (312)
T smart00787 178 RDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 180
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.40 E-value=19 Score=36.57 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=13.5
Q ss_pred HHHHHHHHHhHHHHhhhc
Q 028999 55 KLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lL 72 (200)
|.||..|..-+..|+.-|
T Consensus 544 r~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 544 RQRRRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777777777
No 181
>PRK15396 murein lipoprotein; Provisional
Probab=84.32 E-value=8.5 Score=28.74 Aligned_cols=45 Identities=11% Similarity=0.362 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
|.+|..+|+.|..+.++|..++..++...+.-.+|-.+-...++.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666666666666555555554444433
No 182
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=84.22 E-value=6.2 Score=32.56 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQE---EIKSLKAEKNELREEK 128 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~---ei~~L~~eknELr~Ek 128 (200)
..|+.++.....+...|+. .+.+|+.++.+|+.++
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3344444433333333333 3344444444444433
No 183
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=84.17 E-value=19 Score=30.12 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
-+..++.+++.|+.+...|...++.+-.++.+.+.+...+
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777777777777777777777777777766444
No 184
>PRK02224 chromosome segregation protein; Provisional
Probab=84.12 E-value=13 Score=37.40 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.+..|...+..++.....+..++..+...++.++.+...++.+++.+..++
T Consensus 349 ~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444
No 185
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.11 E-value=10 Score=32.36 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 120 EKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++..|..+...++.+++..+.++++.
T Consensus 160 ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555544444
No 186
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.86 E-value=6.7 Score=36.99 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
|+.++=..+.+|++-+..++++|..|+-+.+++.+|.+|-.+|.+.|..|...
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 55566667788888899999999999999999999999999998888666554
No 187
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.74 E-value=15 Score=30.24 Aligned_cols=72 Identities=26% Similarity=0.362 Sum_probs=33.3
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCChhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRPARTDKPAILDDA---IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~~K~dKasIL~dA---I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.+-|.+++..|-.=|.- ...++..+.-+| =..|..|+.++..+..+...|..+...|+.++..|..+....+
T Consensus 19 ~dsle~~v~~LEreLe~---~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 19 KDSLEDHVESLERELEM---SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HhhHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777666622 234444444333 2334444444444444444444444444444444433333333
No 188
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=83.70 E-value=5.8 Score=31.46 Aligned_cols=39 Identities=33% Similarity=0.435 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 100 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 100 v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
|-+|+...+.|-+.++.++.|.=.||.|++.|-+=||.|
T Consensus 65 VLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 65 VLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 334444444444444444444444455555544444433
No 189
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=83.55 E-value=12 Score=35.94 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=53.0
Q ss_pred HHHhHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 61 iNe~F~~Lr~lLp-P~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
|++-|..|..+-- |. ...-+..+|..|-.....++.....|+.....+..++...-.++|.|-.+...|..+|..
T Consensus 121 l~~ff~a~~~la~~P~--~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 121 LDQFWNSLQELSKNPE--NLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555541 21 245678889988888888877777777777777777877778888888877777776654
No 190
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.55 E-value=12 Score=28.85 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSL--KAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L--~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
|..|...+.........++.+++.| +.+.+.|+-+...++.++..+..+++.++
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555555666777777777777 77777777777777777777777777664
No 191
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=83.49 E-value=4.5 Score=29.03 Aligned_cols=30 Identities=43% Similarity=0.501 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
++..+++.++.+.+.++.+..+|+.|.+.|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 192
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=83.49 E-value=15 Score=37.30 Aligned_cols=6 Identities=0% Similarity=-0.246 Sum_probs=2.7
Q ss_pred eeeccC
Q 028999 18 ADNDIS 23 (200)
Q Consensus 18 ~~~~~~ 23 (200)
|.+|+.
T Consensus 642 vTldG~ 647 (1164)
T TIGR02169 642 VTLEGE 647 (1164)
T ss_pred EEeCce
Confidence 444443
No 193
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=83.48 E-value=7.3 Score=31.27 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 104 KETNEKLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 104 ~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
.++.+.|+++|++|....+.|+.|+..||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777888888888888888888874
No 194
>PRK02224 chromosome segregation protein; Provisional
Probab=83.46 E-value=14 Score=37.06 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELK 104 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~ 104 (200)
+.+-+..|+.+++.|+
T Consensus 535 ~~~~~~~l~~e~~~l~ 550 (880)
T PRK02224 535 KRERAEELRERAAELE 550 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 195
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.42 E-value=15 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
.+..+++|..+++.|.+|+..|+.++
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 196
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.41 E-value=7.5 Score=39.96 Aligned_cols=42 Identities=31% Similarity=0.512 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 104 KETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 104 ~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+..+.|.++.+.++..+.+++.++.+|..++|+|.++++.+
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345567888888899999999999999999999998888776
No 197
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=83.40 E-value=1.3 Score=42.81 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 028999 52 CREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lLpP~~--~~K~dKasIL~dAI~YIk~L~~ 98 (200)
-.-|.||++=|--|.+|..+||-.. .+..||++|+.=|+.||| |+.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlK-mr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLK-MRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHH-HHH
Confidence 3458999999999999999996432 245999999999999998 443
No 198
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.27 E-value=8.6 Score=32.57 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 127 EKLILKADKEKLEQQLK 143 (200)
Q Consensus 127 Ek~~Lk~e~e~L~~qlk 143 (200)
+...|+.+++.|+.+|.
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 199
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=83.20 E-value=1.4 Score=37.13 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
-|..||+.---|+.+++ +.+.|+.+++.|+.|.-+|+.|.
T Consensus 8 klN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 8 KLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888773 34455555555555555554444
No 200
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.12 E-value=9.2 Score=31.08 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 103 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++..+..|..+...+..++..|...+..|..+++.++.+|+.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444443
No 201
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=82.87 E-value=13 Score=35.38 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 61 iNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
|++-|..|.++- -.-....-+..+|..|-..+..++.-...|......+..++...-.++|.|-++...|..+|...
T Consensus 109 l~~ff~a~~~la-~~P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~ 185 (456)
T PRK07191 109 LNNFFSALSAAT-QLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILKN 185 (456)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666677776665 11112466888999998888888887777877777777777777778888877777777766543
No 202
>PRK04325 hypothetical protein; Provisional
Probab=82.80 E-value=8.4 Score=28.11 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
+.|.+|+.++.-++...+.|...+-+-..++..|+.+...|...+..++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788777777777777777777777777777777666655554443
No 203
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=82.74 E-value=12 Score=31.18 Aligned_cols=46 Identities=26% Similarity=0.462 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.++|..+++.|+.++..|....+.+......|.+....|+.+...+
T Consensus 91 ~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 91 RKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence 3455555555555555555444444444444444444444444444
No 204
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=82.39 E-value=12 Score=35.70 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=53.2
Q ss_pred HHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 61 iNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
|++-|..|.++- .|. ...-+..+|+.|-..+..++.-..+|+.....+..++...-.++|.+-++...|..+|-.
T Consensus 104 l~~ff~a~~~la~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 104 LSDFQAALQTAASSPD--NTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554 121 235577899999888888888888888777777778877778888887777777766654
No 205
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=82.38 E-value=14 Score=30.39 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..|+.+-.+|.++++.|++|++.+..|.+-+...++.+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555544443
No 206
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=82.37 E-value=13 Score=32.08 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
|+-.|.-|+ ++.|-.-...+..+|..|..++..|..+...|+..+..|..++..|.++
T Consensus 142 k~~ale~~A--~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 142 KAQALELAA--KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 3334444555566666666666666666666666666666666665543
No 207
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.34 E-value=9.7 Score=38.79 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 130 ILKADKEKLEQQLKV 144 (200)
Q Consensus 130 ~Lk~e~e~L~~qlk~ 144 (200)
.++.+.+.+-.+++.
T Consensus 576 ~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 576 ALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344455555555554
No 208
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=82.34 E-value=11 Score=33.29 Aligned_cols=38 Identities=37% Similarity=0.473 Sum_probs=26.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSL-KAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 107 ~~~L~~ei~~L-~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..+++.++..+ +.|-.-||.|+.+|+.|+|++.++|..
T Consensus 103 f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 103 FAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443222 234445899999999999999998865
No 209
>PF14282 FlxA: FlxA-like protein
Probab=82.27 E-value=6.8 Score=30.24 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELKE----TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~----~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
.+.+..--.-|+.|+.++.+|.. ..+.-+..+..|..++..|..+...|+.+...-..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666777888888888877 224566777777788888887777777666555443
No 210
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.20 E-value=11 Score=37.25 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+......|+.|++.|..++..+...+..|+..++.
T Consensus 197 l~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 197 LTESSEELKEERESLKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443
No 211
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.01 E-value=9 Score=39.83 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|.++=-+.|+.|..+++.|+.....|+-+.++|..++.++-.+.+.|+.+.+.|+.||...
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333344455555555555555566666666666666666666777788888888888743
No 212
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.96 E-value=19 Score=30.81 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
|..+=.-++.++.++..|+-+++.|......|..|.++|.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555555555554443
No 213
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.94 E-value=6.4 Score=34.64 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQE---LKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~---L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
.+...+.-....+|++...+ ++.....|+.+++++..|.+.|-+|.+.|+.+++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444444444444443333 3345566666667777777777777666666654
No 214
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.93 E-value=12 Score=39.07 Aligned_cols=50 Identities=34% Similarity=0.450 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 97 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
+.+++.+....+....++.+|.+++.|+++-+..|-.|+..|.+|+|.+.
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 33444445555666677888888888888888888899999999998774
No 215
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=81.79 E-value=19 Score=26.68 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
+...+..+...++.+...|..|.+.|+-|.+.|
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444
No 216
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.78 E-value=30 Score=29.09 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.+-..|+.-+.+++.++..|+...+.+...+..|+..+.+|......++.+.+-|.
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666555555555555555555555555544444443
No 217
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=81.74 E-value=16 Score=25.89 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELK-ETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~-~~~~~L~~ei~~L~~eknELr 125 (200)
|.+|-+.|++|.-++..+- .....+...++..+.+++.|+
T Consensus 34 l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 34 LDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655554 233444444444444444443
No 218
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=81.69 E-value=7.7 Score=35.09 Aligned_cols=89 Identities=27% Similarity=0.339 Sum_probs=60.6
Q ss_pred CccCCCCCCCC------C-CCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 35 TRKRARSDSCS------R-PGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETN 107 (200)
Q Consensus 35 ~~kR~r~~~~~------r-~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~ 107 (200)
.+||.|..--+ | |...-.+-.--||+=+.+..++-..| + |-++--..|+.+.+.|...|
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i---~-----------dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEI---K-----------DLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHHHHHH
Confidence 36666654332 2 33333444455666677777776665 1 22345566888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
+.|-.+..+|..++.++++|...|+.+...
T Consensus 121 ~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 121 ESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999989999999999999998888766543
No 219
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=81.68 E-value=5.6 Score=39.14 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 55 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
.++.+++++.+..|+...+-.. ..+.. ...+++. .+.+-.+..+...+.+.+++.++..++++|++|...++.+
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~~---~~~~~--~~~~~~~-~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKLN---PLREE--KKKVSVK-SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHhccccc---cchhh--hcccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888763211 10000 0011111 0111112333444555555666666666666666666666
Q ss_pred HHHHHH
Q 028999 135 KEKLEQ 140 (200)
Q Consensus 135 ~e~L~~ 140 (200)
++.|+.
T Consensus 123 ~~~l~~ 128 (646)
T PRK05771 123 IERLEP 128 (646)
T ss_pred HHHhhh
Confidence 665553
No 220
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.68 E-value=9.7 Score=34.88 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=39.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++|.+.+- -|.-|+..+..|++.+..|+.+.++...+.+.++.....|+.+...|+.+|+.
T Consensus 105 Nek~~l~y----qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 105 NEKSALMY----QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666543 24556667777777777777776666666666666666666666666666654
No 221
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=81.51 E-value=15 Score=36.48 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=45.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 79 RTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 79 K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
-.-+.++|..|-.....++.-...|+.....+..++...-.++|.|-++.+.|..+|-..
T Consensus 138 ~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~ 197 (627)
T PRK06665 138 LAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKS 197 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778899888888888887777777777777777777777888777777777666553
No 222
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.41 E-value=2.5 Score=30.19 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 112 EEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+|++.|+..+.+|.+++..|+.|...|.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555
No 223
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.41 E-value=20 Score=35.81 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++.+..|+|+|..+...++.++++|.+.+..
T Consensus 334 ve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 334 VERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777777777777777654443
No 224
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=81.36 E-value=20 Score=32.93 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.|++|=+.=|.+-+ .|..+...|..+..+|+++...|..||..|.|-+-+
T Consensus 238 AAtRYRqKkRae~E-------~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 238 AATRYRQKKRAEKE-------ALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777655444443 344444555556666666666666666666665544
No 225
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.34 E-value=9.5 Score=38.10 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.|...|+.+...++..+..|.+++..|+.++.........|...+.+|+.|+...
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5999999999999999999999999999999999999999999999998887754
No 226
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=81.29 E-value=7.8 Score=35.33 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
|+++++.=.+.++++. . +..+..=+.+.-+-+++|+...++++.+.+.+..+++++..
T Consensus 5 ~~~~~~~~~~~r~l~~-~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 5 KEQREEIVAEIRSLLD-K---AEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHh-h---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777773 1 11111111222222334555555555555555544444433
No 227
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=81.17 E-value=14 Score=37.30 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=53.7
Q ss_pred HHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 61 iNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
|++-|..|.++- -.-..-.-+..+|+.|-....+++.--..|......+..+++..-.++|.|-++.+.|..+|.+.
T Consensus 109 L~~Ff~alq~la-~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 109 LQRFFTALQTAA-ANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444 11112356788999998888888888888888777778888888888888888777777777543
No 228
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.17 E-value=6.9 Score=36.18 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
.|...+.+++.++++|+...++|. .+...++.++++++.+++.+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 51 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLE-------AENEKLERELERLKSELEKLKSP 51 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444 44444444555555555554443
No 229
>PRK10869 recombination and repair protein; Provisional
Probab=80.99 E-value=21 Score=34.85 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=61.3
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 56 LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 56 ~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~---~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.|=+.|++++..|..+- + |=. .-+.+.+.|..+++.+.+.|.. ..+.|+.++..++.+..++..+.+..+
T Consensus 296 ~~l~~ie~Rl~~l~~L~---r--Kyg--~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R 368 (553)
T PRK10869 296 NRLAELEQRLSKQISLA---R--KHH--VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSR 368 (553)
T ss_pred HHHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776 2 222 2478899999999999888764 567788888888888888777776554
Q ss_pred HH-H----HHHHHHHHHhcCCCC
Q 028999 133 AD-K----EKLEQQLKVMAMPTG 150 (200)
Q Consensus 133 ~e-~----e~L~~qlk~~~~~p~ 150 (200)
.+ - +.+..+|+.++.+..
T Consensus 369 ~~aA~~l~~~v~~~L~~L~m~~a 391 (553)
T PRK10869 369 QRYAKELAQLITESMHELSMPHG 391 (553)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCc
Confidence 33 2 334566777766655
No 230
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.95 E-value=18 Score=30.99 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
...+.+++.++.+++..+..|+..+..++.++.+.+++...++.+++....
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666666666665555555555544444433
No 231
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.94 E-value=12 Score=28.13 Aligned_cols=56 Identities=36% Similarity=0.490 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 90 IRVLNQLRTESQELKETNEKLQE---EIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~---ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+.-+..|+.+...+.++...+.. +..+|..+..++.++...+..+...++.++...
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666655543 466777777777777777777777777777664
No 232
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.86 E-value=9.7 Score=33.50 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|-.-+..|+.+......+...|..++.++..++..|.++...-..+.+.|+.++..
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555566677777777777777777777777777777776655
No 233
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=80.86 E-value=7.1 Score=36.08 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
.++++.|+.++++|+..+..|..+.+.++.++.++++++..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45677788899999999999999999999999998888876654
No 234
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=80.77 E-value=15 Score=25.86 Aligned_cols=49 Identities=33% Similarity=0.435 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Q 028999 97 RTESQELKETNEKLQEEIKSLKAEKN--------------ELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~~ekn--------------ELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..++..|+.+.+.++.++..+..-++ .-++....++.++++|+..|..+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555544444443322 23445566777778887777654
No 235
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=80.70 E-value=12 Score=34.39 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKE-TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~-~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+||+|=..|-+-.++|++ ...+|...+..+...+.++.+....|+.+++.|+.+++
T Consensus 49 ~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 49 EAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665555555555554 23344444444444444444444444555555544443
No 236
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.64 E-value=24 Score=27.88 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 115 KSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..|..++.++......|..+..-|.+||..
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444455443
No 237
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.56 E-value=20 Score=26.22 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
++.|+..++++....+.+++++..+..|.+++-++...+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l 59 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNEL 59 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333
No 238
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=9.1 Score=31.62 Aligned_cols=45 Identities=31% Similarity=0.454 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
..+||+| |++++++|++..+.|+..+.+|.....+++.+...+.+
T Consensus 92 ~~eAie~---l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 92 ADEAIEF---LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 56778888888889999999999998888887776643
No 239
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.28 E-value=9.9 Score=38.77 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=3.8
Q ss_pred CCCCccc
Q 028999 174 GLMPMWQ 180 (200)
Q Consensus 174 ~~~~mwq 180 (200)
|||-||-
T Consensus 668 g~~k~~v 674 (782)
T PRK00409 668 GIMKMKV 674 (782)
T ss_pred CCEEEEE
Confidence 4566653
No 240
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.25 E-value=13 Score=29.98 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|..+++.|....++..+-++..+.+..++++.....+.+++.+++-+..
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555666666666666666666666665554443
No 241
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.23 E-value=14 Score=36.69 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=3.4
Q ss_pred HhHHHHhhh
Q 028999 63 DRFLDLSCI 71 (200)
Q Consensus 63 e~F~~Lr~l 71 (200)
+-+.+|+..
T Consensus 120 ~e~~elr~~ 128 (546)
T KOG0977|consen 120 EELKELRKK 128 (546)
T ss_pred HHHHHHHHH
Confidence 333333333
No 242
>PRK03918 chromosome segregation protein; Provisional
Probab=80.22 E-value=30 Score=34.68 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
.+.+.++.....+..++..++.+++++..+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 695 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKT 695 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 243
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=80.16 E-value=9.2 Score=25.49 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 120 EKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~ 140 (200)
++..|+.++..||-++.++..
T Consensus 28 ~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 28 ELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666666666554
No 244
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.15 E-value=10 Score=33.28 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEK 109 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~ 109 (200)
|.+|+..+..+..++..
T Consensus 56 l~~lr~~id~~~~eka~ 72 (312)
T PF00038_consen 56 LRELRRQIDDLSKEKAR 72 (312)
T ss_dssp HHCHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhhH
Confidence 33444444444433333
No 245
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.93 E-value=23 Score=29.04 Aligned_cols=66 Identities=26% Similarity=0.331 Sum_probs=44.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
...-+|+..=+=+..+..+...++.+.......+..++.++..+..+...++.++.+|.++.-.+.
T Consensus 74 ~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~ 139 (177)
T PF13870_consen 74 KTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLG 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 445566666666666777777777777777777777777777777777777777777766555443
No 246
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=79.85 E-value=17 Score=27.24 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.|+--++|+.++..-+.+.+.|..-+..|+..+-.+-+-+..|+.+...++.
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666666666666666665555555555555555554444
No 247
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=79.65 E-value=33 Score=28.20 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=61.0
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVL-NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YI-k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.|++.|..|-.+++.+ . .....+.++++-| .++...++..-.-...++.+++.++.|+..|.+.+...+..+++|
T Consensus 5 el~~~~~~l~~~~e~~---~-~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 5 ELTDEYLELLELLEEG---D-LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999998443 2 3345666776663 345666777777778888899999999999999998888888888
Q ss_pred HHHHHH
Q 028999 139 EQQLKV 144 (200)
Q Consensus 139 ~~qlk~ 144 (200)
.+-|..
T Consensus 81 k~yL~~ 86 (162)
T PF05565_consen 81 KEYLLD 86 (162)
T ss_pred HHHHHH
Confidence 876654
No 248
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.64 E-value=26 Score=34.59 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 87 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 87 ~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
..-.+.+..++.++.+++.+...++.++..++.++++++.
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555554444444444444444444433
No 249
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.62 E-value=7.1 Score=38.44 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK----LILKADKEKLEQQLKVMA 146 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek----~~Lk~e~e~L~~qlk~~~ 146 (200)
+|.=-|.++|+-++.+ +.+|...+..+..+..+.-.+.+++++++ ..-+.|+|+|+.+|..++
T Consensus 480 nksi~Lee~i~~~~~~---i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 480 NKSITLEEDIKNLKHD---INELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred ccceeHHHHhhhHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3433388888777666 44555566666666555555555555544 456789999999988764
No 250
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.40 E-value=22 Score=25.92 Aligned_cols=53 Identities=30% Similarity=0.396 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+--..|-.....+...+..|+..+.++..++.+|......+..+++.|+..++
T Consensus 19 eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 19 EEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33345555555556666666666666666666666666666667777666554
No 251
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.33 E-value=11 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
...+...+..++.|.++++++...++.-+.+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444433333
No 252
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.19 E-value=13 Score=26.45 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+....+...-.+...+.+-...+..|..++++|+.++..
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555556666666666666544
No 253
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=79.16 E-value=27 Score=27.18 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCC---CCCCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEP---GRPARTDKPAILD-DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP---~~~~K~dKasIL~-dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
+..+-.-.+|..|+ .=|..|...|+. +.....+..-+.. ..+.+++=+|-.++=|-...+.|...+..|..++
T Consensus 13 r~i~~iDvd~i~~~---~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~ 89 (118)
T PF13815_consen 13 RLISAIDVDRIVRE---LDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERL 89 (118)
T ss_pred HHHhccCHHHHHhc---cCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777773 345555555532 1111222222222 3357777777888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 122 NELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..+..+...|+....++..+++.+
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 90 QELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888875
No 254
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=79.14 E-value=17 Score=35.88 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
...+..++..+.+++.++...|+++++++++++..+
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666666666554
No 255
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=79.03 E-value=15 Score=34.22 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKS---LKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~---L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+|+..|+.++++++.+.++|.+.+.+ .+..+.++.++..++..+++.+++-++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888887777777665433 3445666777777777777777765443
No 256
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=79.00 E-value=22 Score=34.40 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=52.2
Q ss_pred HHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 61 iNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
|++-|..|..+. .|. ...-+..+|..|-..+..++.-...|......+..+++..-.++|.|-++...|..+|-.
T Consensus 110 l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 110 MQDFFTSLQTLVSNAE--DPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 121 235678899998888888888777777777777777777777888877777777666644
No 257
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=78.99 E-value=3.1 Score=31.10 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 122 NELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++|.+|+..||.++.+|+.+|+.+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544443
No 258
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=78.67 E-value=6.4 Score=38.42 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 028999 134 DKEKLEQQLKVMAMPTGGY 152 (200)
Q Consensus 134 e~e~L~~qlk~~~~~p~g~ 152 (200)
++++|..||..+..||.+|
T Consensus 30 ~~~~~~~~~~~~~~p~~~~ 48 (512)
T TIGR03689 30 KLSKLKSQLEQLAQPPSTY 48 (512)
T ss_pred HHHHHHHHHHHhcCCCcce
Confidence 3344444566666677766
No 259
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.66 E-value=11 Score=33.04 Aligned_cols=50 Identities=28% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|..++..+......|..++..-..|.++|+.+....+...++....|..+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666666666666666666666666666666554
No 260
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=78.62 E-value=23 Score=25.86 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
+.-+-++++...++.++++.+.+..|+.++-.+-|++-+....-....+
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~ 71 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVD 71 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444555556666666666666666666666666665554443333333
No 261
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.49 E-value=36 Score=33.21 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
..+...+-+.+|..++..++.+...+.+.+..|+....+.++....++..+..++..+...+.|
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lp 440 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLP 440 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3677777777888888888888888888888888888888887778877777777777665554
No 262
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.47 E-value=13 Score=34.98 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+|..+.+.|+...+.|..-..+|+.++..|..+...|+..++-|....
T Consensus 229 ~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 229 RLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444445555555555555555555555555555554433
No 263
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=78.37 E-value=22 Score=26.67 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 120 EKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
...+|-.|.+.|..|+-+|++++..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666554
No 264
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=78.29 E-value=27 Score=28.88 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=3.4
Q ss_pred hHHHHhhhc
Q 028999 64 RFLDLSCIL 72 (200)
Q Consensus 64 ~F~~Lr~lL 72 (200)
.|.+|+.-+
T Consensus 59 ~~~eLr~el 67 (177)
T PF07798_consen 59 AIAELRSEL 67 (177)
T ss_pred HHHHHHHHH
Confidence 333343333
No 265
>PRK14127 cell division protein GpsB; Provisional
Probab=78.16 E-value=6.3 Score=31.13 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 117 LKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 117 L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|..|+.+|++|+..|+.+++.++.++..
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444555555555555555555543
No 266
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.15 E-value=14 Score=40.60 Aligned_cols=89 Identities=13% Similarity=0.229 Sum_probs=68.5
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 55 KLRRERLNDRFLDLSCILEPGRP--ARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lLpP~~~--~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
..++..++.+..+|..++ ..+. .=.|-..+|++.-+....|+.++..+++....+.++.++...+.++...+...++
T Consensus 948 ~~~~~~~~~~~~~l~~~~-~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slk 1026 (1486)
T PRK04863 948 QQTQRDAKQQAFALTEVV-QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLK 1026 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999998 3221 1256677899999999999999999999999999999888888888888777766
Q ss_pred HHHHHHHHHHHH
Q 028999 133 ADKEKLEQQLKV 144 (200)
Q Consensus 133 ~e~e~L~~qlk~ 144 (200)
..++.++++++.
T Consensus 1027 sslq~~~e~L~E 1038 (1486)
T PRK04863 1027 SSYDAKRQMLQE 1038 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 666655555444
No 267
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.94 E-value=11 Score=37.41 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
..|+.+++..-+.+....+.|..++.+...|+.-|+.++.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d 318 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKEND 318 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544444444444444443333333333333333
No 268
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.92 E-value=25 Score=30.93 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELK-------ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~-------~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
-.|.+-..-+..|..+-.... .....|+..|+.++.+++..++...++..|+..|..++..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554422222 2333445555555555555444444444444444444444
No 269
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=77.90 E-value=12 Score=28.64 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 61 iNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
++..-.+|..+- .+. --.|++.|.+. |=..-+.++.+|+.++..|..++..|+.+++--+.|+..|
T Consensus 17 ve~vA~eLh~~Y-ssK--HE~KV~~LKks--Ye~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 17 VEKVARELHALY-SSK--HETKVKALKKS--YEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHH-hhH--HHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555 222 35677777653 3344556666666666666666666666666666665544
No 270
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=77.89 E-value=18 Score=31.44 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKETNEK--LQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~~~~~--L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|...=..|.-..|+.|+.+.+.|.+-.++ --+++-++..++++.+.|...++.++..|.+++.-
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 33333333333444444444444432221 12334455555555555555555555555555543
No 271
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=77.85 E-value=25 Score=25.74 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 95 QLRTESQELKE----TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 95 ~L~~~v~~L~~----~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
+|....+.|+. ....++.....|......-..++..|..++..|.+|+..++.+
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 3344556666666667777777778888888888888777543
No 272
>PRK04654 sec-independent translocase; Provisional
Probab=77.82 E-value=24 Score=31.06 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKET 106 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~ 106 (200)
++|+++|......+.+
T Consensus 34 k~irk~R~~~~~vk~E 49 (214)
T PRK04654 34 LWVRRARMQWDSVKQE 49 (214)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 273
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.69 E-value=22 Score=25.08 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|+.++..+...++-++.|+..++.+++++++-++.
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555544444443
No 274
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=77.64 E-value=23 Score=35.20 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=48.1
Q ss_pred HHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 61 iNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
|++-|..|.++- .|. ...-+..+|..|-.....++.-...|+.....+..++...-.++|.|-++.+.|..+|.+
T Consensus 114 l~~ff~al~~ls~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~ 189 (613)
T PRK08471 114 LQDYFNAWNDFASNPK--DSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKE 189 (613)
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444 121 234577788888777777777777777766667777777777777777776666666544
No 275
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.63 E-value=27 Score=29.37 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+.-..+..|+.+++.+......|...+..|+..+.+++.+...|+......+.+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~ 150 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK 150 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777888888888888888888888888888888888777666555443
No 276
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=77.57 E-value=27 Score=29.23 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.|+.++|+-|..=+.++=...+ ....+...|+.|+.+++.+....-.+.++|+...+
T Consensus 2 ~Ii~~ti~~ie~sK~qIf~I~E---~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er 58 (159)
T PF05384_consen 2 KIIKKTIDTIESSKEQIFEIAE---QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRER 58 (159)
T ss_pred hHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888887777655443 33445555666666666666666666666655443
No 277
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.49 E-value=11 Score=40.14 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|..++..+++.+..|+.+.++-...+-+|+.|...|++|+++|.|+...
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e 223 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEE 223 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444445677777777777777766654
No 278
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.33 E-value=15 Score=38.44 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=16.3
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCChhhHHH
Q 028999 59 ERLNDRFLDLSCILEPGRPARTDKPAILD 87 (200)
Q Consensus 59 ekiNe~F~~Lr~lLpP~~~~K~dKasIL~ 87 (200)
|.+|+.|.-|.+.+.- ..+..-=.|||+
T Consensus 382 Dd~~~~f~lL~n~vkd-T~aE~yfLSILQ 409 (1102)
T KOG1924|consen 382 DDANEVFELLANTVKD-TGAEPYFLSILQ 409 (1102)
T ss_pred ccHHHHHHHHHHhhhh-ccccchHHHHHH
Confidence 5678888888888732 222333345554
No 279
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=77.29 E-value=14 Score=37.70 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 028999 136 EKLEQQLKVM 145 (200)
Q Consensus 136 e~L~~qlk~~ 145 (200)
.+..++++.+
T Consensus 599 ~~~~~~~~~~ 608 (771)
T TIGR01069 599 IKSIEDLVKL 608 (771)
T ss_pred HHHHHHHHHH
Confidence 3344445544
No 280
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=77.01 E-value=26 Score=27.67 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
+|+..+.+|...| -.. =.+...-|-.=+.-++.++..++.++...+.|+...+.|+.++-+=-++...+....++|+
T Consensus 37 kL~~~i~eld~~i-~~~--v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 37 KLNFDIQELDKRI-RSQ--VTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHH-HHH--HHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555666665555 111 0222222333334455555555555555666666666666666655555555555555555
Q ss_pred H
Q 028999 140 Q 140 (200)
Q Consensus 140 ~ 140 (200)
+
T Consensus 114 ~ 114 (132)
T PF10392_consen 114 Q 114 (132)
T ss_pred H
Confidence 4
No 281
>PRK14127 cell division protein GpsB; Provisional
Probab=76.99 E-value=17 Score=28.69 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+|+.++-...+.|..++..|++++..|+.++.+++.+..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555555555555555555555555554443
No 282
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=76.96 E-value=25 Score=27.09 Aligned_cols=52 Identities=31% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
-|.+++.+.-.+...|..|-.++.+|+.+....++ ...+..++++++..++.
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555544443333 33455666666666654
No 283
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=76.89 E-value=16 Score=27.06 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
....+..++..+..+..+|++|+..|+.|+.+|.
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666667777777777777766666664
No 284
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=76.88 E-value=35 Score=27.05 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.+-+.|+..+.+|+.+...+.+.+++|+.+...+.
T Consensus 37 kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 37 KQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 285
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=76.65 E-value=28 Score=26.04 Aligned_cols=51 Identities=29% Similarity=0.335 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.|-.+..+|+......++||..|+.-...||.+..+.-.-..+|+.+....
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~ 52 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNL 52 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888888888888888887777777788777654
No 286
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.63 E-value=28 Score=29.76 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
..+..|+.++..++.....|+..+.+|+..+.+++..+..|.+.....+.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555444444443
No 287
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=76.60 E-value=22 Score=34.50 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=37.9
Q ss_pred CCCccCCCCCCCCCCCchhHHHHH-HHHHHHHhHHHHhhhcCCC-------CCCCCCh--hhHHHHHHHHHHHHHHHHHH
Q 028999 33 ENTRKRARSDSCSRPGSKACREKL-RRERLNDRFLDLSCILEPG-------RPARTDK--PAILDDAIRVLNQLRTESQE 102 (200)
Q Consensus 33 ~~~~kR~r~~~~~r~~sH~~~ER~-RRekiNe~F~~Lr~lLpP~-------~~~K~dK--asIL~dAI~YIk~L~~~v~~ 102 (200)
.|++|++|......+...-..+|. ==.-||+.+.-++.---+. ...+.+| ..-|-+.-+-|++|+....+
T Consensus 352 ~gkrk~~rkrk~~aKa~~ree~r~dvF~fiNekl~g~~~~~~~~~rkkt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~k 431 (486)
T KOG2185|consen 352 GGKRKRGRKRKEAAKAAKREEERKDVFSFINEKLFGTRHEKVHSERKKTRENAGPSDKTLGAALVEYEDEIRRLKRDMLK 431 (486)
T ss_pred cccccchhhhhhhccccCCccccccHHHHHHHHhcccccccccchhhhhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455666665555555444444443 2345566655543322221 1234666 12344555667777777777
Q ss_pred HHHH
Q 028999 103 LKET 106 (200)
Q Consensus 103 L~~~ 106 (200)
|+..
T Consensus 432 lkq~ 435 (486)
T KOG2185|consen 432 LKQM 435 (486)
T ss_pred HHHH
Confidence 6653
No 288
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.48 E-value=20 Score=31.22 Aligned_cols=29 Identities=28% Similarity=0.341 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
-|.+.|..+.+.+.....+|.+.+...+.
T Consensus 81 s~~qeLe~~L~~~~qk~~tl~e~~en~K~ 109 (203)
T KOG3433|consen 81 SVLQELESQLATGSQKKATLGESIENRKA 109 (203)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 35566666666666555555555444333
No 289
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=76.37 E-value=19 Score=27.44 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei 114 (200)
+++++.++++|..+|++|..|.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 290
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.29 E-value=21 Score=27.05 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
+.-+.+..|..+++.++.....+..++.++..+.+++
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333333333333
No 291
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.16 E-value=15 Score=34.06 Aligned_cols=54 Identities=30% Similarity=0.484 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+=-++|.+| +++...+.+|+.+++.+.-|+.|+..|....+-..+||.++|.-+
T Consensus 127 ere~lV~qL----Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 127 EREDLVEQL----EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445444 556666777777777777777777777777777777777777553
No 292
>PRK00846 hypothetical protein; Provisional
Probab=76.05 E-value=26 Score=26.15 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.+.|.+|+.++.-.+...+.|...+-....++..|+.+...|......++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777777777777777777777777777776666655554444
No 293
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=75.70 E-value=33 Score=32.47 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=47.5
Q ss_pred HHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 61 iNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
|++-|..|.++- .|. ...-+..+|..|-.....+..-...|......+..++...-.++|.+-++...|..+|.
T Consensus 114 l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 188 (431)
T PRK06799 114 MDGFFNAFREVAKNPE--QANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIG 188 (431)
T ss_pred HHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 121 23557778888877777777777777776666667777777777777777777666654
No 294
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=75.58 E-value=22 Score=33.21 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=5.0
Q ss_pred HHHhHHHHhhh
Q 028999 61 LNDRFLDLSCI 71 (200)
Q Consensus 61 iNe~F~~Lr~l 71 (200)
|-+.|.+|..+
T Consensus 10 i~~li~~la~~ 20 (328)
T PF15369_consen 10 IANLIKELARV 20 (328)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 295
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=75.54 E-value=3.3 Score=35.02 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCCC-CCCChhhHHHHHHHHHHHHHH
Q 028999 53 REKLRRERLNDRFLDLSCILEPGRP-ARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 53 ~ER~RRekiNe~F~~Lr~lLpP~~~-~K~dKasIL~dAI~YIk~L~~ 98 (200)
.|+.|-.++|+.|.-|+.++ |+.+ .++.+---|..+.+||..|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~-pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLE-PGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccC-CCCCCcccccccccccCCCchhhHHH
Confidence 58888889999999999999 5432 333333336666677766654
No 296
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.45 E-value=22 Score=33.20 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHhhhc
Q 028999 55 KLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lL 72 (200)
|.+=+.|+..-..+.+.+
T Consensus 219 R~hleqm~~~~~~I~~~~ 236 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESAL 236 (359)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444445555555555555
No 297
>PRK15396 murein lipoprotein; Provisional
Probab=75.39 E-value=23 Score=26.43 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++++|..+.+.|..++..+..+.+.++.....-+.|-+|-.+.|..+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888888888888888888888877777666543
No 298
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=75.34 E-value=13 Score=34.20 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++....+.+++...+..+..+.++|.....+-|.|.|++++.|..+
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444455444455555555555555554
No 299
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=75.30 E-value=0.92 Score=40.27 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
+||.+=.--|.+|+.-|+-|-.+|+.|+.+.+.|++
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~a 157 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKA 157 (243)
T ss_dssp ------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444445555555555555555554444333333
No 300
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=75.28 E-value=34 Score=26.10 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 115 KSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+...++..|..+...|++++.+++..++.
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666555544
No 301
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=75.26 E-value=21 Score=33.16 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELKETN-EK----LQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~~~-~~----L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+.|.++.|+-.-+|+.+.+++-+.. .. .+.+++++-..+.||+.|...|+.+++.|+.
T Consensus 255 ak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 255 AKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3466777777777777666655432 22 3677888888888888888888888777764
No 302
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.14 E-value=16 Score=36.26 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++.++..++..+..|.+|+..|+.|+.+|..+|+.+
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345556666666667777777777777777766654
No 303
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.13 E-value=21 Score=36.53 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 028999 131 LKADKEKLEQQLKV 144 (200)
Q Consensus 131 Lk~e~e~L~~qlk~ 144 (200)
.+.+.+.+-.+++.
T Consensus 582 a~~~~~~~i~~lk~ 595 (782)
T PRK00409 582 AKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445455554
No 304
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.05 E-value=27 Score=31.90 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.8
Q ss_pred CCCCCC
Q 028999 170 YPSYGL 175 (200)
Q Consensus 170 ~~~y~~ 175 (200)
|.+|-|
T Consensus 320 ~isY~G 325 (344)
T PF12777_consen 320 FISYLG 325 (344)
T ss_dssp HHHCCC
T ss_pred HHHHcC
Confidence 444444
No 305
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.00 E-value=18 Score=36.92 Aligned_cols=84 Identities=29% Similarity=0.391 Sum_probs=46.9
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLK-------AEKNELREEKL 129 (200)
Q Consensus 57 RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~-------~eknELr~Ek~ 129 (200)
|-..++.++.+|..-|-..+..-...-+=..+-...+.+|+...+.++.+...|+++++++| +++.||.+||.
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33456666666666551100000111112223334455556666666666666777766655 46778888888
Q ss_pred HHHHHHHHHHH
Q 028999 130 ILKADKEKLEQ 140 (200)
Q Consensus 130 ~Lk~e~e~L~~ 140 (200)
.|+.++.-|.+
T Consensus 108 slQKqvs~Lk~ 118 (717)
T PF09730_consen 108 SLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHH
Confidence 88888888754
No 306
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=74.96 E-value=18 Score=31.32 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAE--KNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~e--knELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|..|+++++.|+.+......||++|..- ..|++++.+.|+.++......|+..
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443 2356666677776666555555544
No 307
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=74.85 E-value=45 Score=32.12 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 120 EKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~q 141 (200)
|++-||.|+..|..|.|..+.+
T Consensus 350 EKaaLrkerd~L~keLeekkre 371 (442)
T PF06637_consen 350 EKAALRKERDSLAKELEEKKRE 371 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444433
No 308
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=74.71 E-value=14 Score=34.87 Aligned_cols=29 Identities=38% Similarity=0.416 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 116 SLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 116 ~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+|+.+..+|+++...|+.+...++.++..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555544
No 309
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=74.70 E-value=28 Score=34.56 Aligned_cols=77 Identities=10% Similarity=0.191 Sum_probs=53.6
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
.|++-|..|.++- -.-..-..+..+|..|-....+++.--..|......+..++...-.++|.|-++.+.|..+|..
T Consensus 108 ~l~~ff~alq~la-~~P~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~ 184 (624)
T PRK12714 108 LWSNFFDSTSALS-SNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGS 184 (624)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555 1111235677888888888888888777777777777777777777888887777777777654
No 310
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=74.41 E-value=28 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~ 98 (200)
-+.||+++.++++-- |.. ..++..|| -|+.+..++..
T Consensus 27 a~~i~~~i~~~~~~~-~~~--~~~~~~vl-aaLnla~e~~~ 63 (89)
T PF05164_consen 27 AELINEKINEIKKKY-PKL--SPERLAVL-AALNLADELLK 63 (89)
T ss_dssp HHHHHHHHHHHCTTC-CTS--SHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCC--CHHHHHHH-HHHHHHHHHHH
Confidence 367899999999987 422 46666666 45555555444
No 311
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=74.31 E-value=18 Score=28.56 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
+.+|+++++ ..++.|....+.|..++..++.+++++.+....+..
T Consensus 92 ~~eA~~~l~---~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILD---KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776654 445566666666666666666666666655554443
No 312
>PF15294 Leu_zip: Leucine zipper
Probab=74.14 E-value=14 Score=33.74 Aligned_cols=45 Identities=38% Similarity=0.511 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
|..++..|+.+|++|+..+..+...-...-+|+..|+.++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555444
No 313
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=74.13 E-value=24 Score=33.42 Aligned_cols=52 Identities=38% Similarity=0.532 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEIK----------SLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~----------~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++|+.+++.|+.+...+..++. +|..+..+|+++...|+.+...++.++...
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444444443 344555555556666666666666666553
No 314
>PRK10698 phage shock protein PspA; Provisional
Probab=74.12 E-value=35 Score=29.58 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
..-+..|+.+.+......+.|+..+..|+..+.+++..+..|.+....-+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666667777777777777777777777666555444443
No 315
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.96 E-value=23 Score=27.15 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
-|..+--+.+..|..+++.++...+.|......|.....+++.
T Consensus 60 lv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 60 LVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred hheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555554444444444444433
No 316
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.94 E-value=23 Score=32.65 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhc
Q 028999 133 ADKEKLEQQLKVMA 146 (200)
Q Consensus 133 ~e~e~L~~qlk~~~ 146 (200)
.|..+|+.-|+.|-
T Consensus 156 iQN~KLEsLLqsME 169 (305)
T PF15290_consen 156 IQNKKLESLLQSME 169 (305)
T ss_pred hhHhHHHHHHHHHH
Confidence 34455777788774
No 317
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=73.92 E-value=13 Score=34.21 Aligned_cols=71 Identities=27% Similarity=0.290 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 48 GSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 48 ~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
-.+...++.||.+.+....+.|-.= -|-+=-.++..-++.|..+.++|+.+...|..||++||+-+-|...
T Consensus 220 ~~~~~~~~~~rkr~qnk~AAtRYRq--------KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 220 PYKTPEKKLRRKRQQNKAAATRYRQ--------KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred CCCCchHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888887777653 1223334445556667777777777777777777776666655443
No 318
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=73.47 E-value=21 Score=30.47 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=24.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
++-+.|+. +|.+.++.+.+..+.-....++-+.+-+..+.++..++..|+.++...++
T Consensus 117 N~C~e~~~--~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 117 NTCAELGK--EYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred cHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444443 23333333333333333333333344444455555555555555554443
No 319
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=73.46 E-value=5 Score=28.70 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
+.+.|++.|.+|....++|..||..||+-
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666677777777777643
No 320
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=73.45 E-value=29 Score=27.79 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=5.5
Q ss_pred HHHHHHHHH
Q 028999 85 ILDDAIRVL 93 (200)
Q Consensus 85 IL~dAI~YI 93 (200)
+|++++=|.
T Consensus 78 ll~E~fiF~ 86 (134)
T PF07047_consen 78 LLGEAFIFS 86 (134)
T ss_pred HHHHHHHHH
Confidence 666665554
No 321
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.44 E-value=24 Score=37.69 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+|.+++.-+..|.....+|++++.+.......+.....+|+.++..|+.|...|..|+..+
T Consensus 495 k~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 495 KSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46777788888888888777777776666666666666666666666666666665555543
No 322
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.41 E-value=21 Score=31.95 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
-+..+.+|++|.++|++++..|..+. .....+++.|+.+|+.-.
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~---~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQL---EILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 33444556788888888877764433 333445677777776533
No 323
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=73.30 E-value=16 Score=35.36 Aligned_cols=21 Identities=19% Similarity=-0.097 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHhhhc
Q 028999 52 CREKLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lL 72 (200)
..|-.+=..++..|..+++--
T Consensus 110 ~~~s~~~~~~~~~f~i~~~qt 130 (447)
T KOG2751|consen 110 KTLSATINVLTRLFDILSSQT 130 (447)
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 344444445566677666655
No 324
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=73.25 E-value=11 Score=29.89 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGY 152 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~ 152 (200)
|++.-.+.+++-..|-.+.-.|+...+.|.+...-.++|+.+|++|..-|-|-+..+-...+-|
T Consensus 47 a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVF 110 (120)
T KOG3650|consen 47 AVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVF 110 (120)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhh
Confidence 4444555667777777778888999999999999999999999999999988887753333334
No 325
>PRK02119 hypothetical protein; Provisional
Probab=73.21 E-value=33 Score=24.96 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
..-+.|.+|+.++.-.+...+.|...+-+...++..|+.+...|...+..++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345677777777777777777777777777777777777776665555544
No 326
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=73.20 E-value=29 Score=34.76 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=53.0
Q ss_pred HHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 61 iNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
|++-|..|..+- -.-..-..+..+|+.|=....+++.--..|.........++...-.++|.|-++...|..+|.+.
T Consensus 110 L~~Ff~alq~la-~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 110 ITSFFTGLQNVA-NNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666554 11112355777888888888887777777777777777777777778888877777777666554
No 327
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.16 E-value=30 Score=35.24 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=22.8
Q ss_pred hhHHHHHHH-----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIR-----VLNQLRTESQE-------LKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 83 asIL~dAI~-----YIk~L~~~v~~-------L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
..+|.+|++ ||..+..-..+ |+.+.+.-..++.+|+.+++.|++....|.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La 599 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA 599 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777765 33333332223 333333333444445555555544444443
No 328
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=73.07 E-value=30 Score=26.37 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=4.7
Q ss_pred HhHHHHhhhc
Q 028999 63 DRFLDLSCIL 72 (200)
Q Consensus 63 e~F~~Lr~lL 72 (200)
+.+.-|-+++
T Consensus 3 dkI~rLE~~~ 12 (86)
T PF12711_consen 3 DKIKRLEKLL 12 (86)
T ss_pred hHHHHHHHHh
Confidence 3444455554
No 329
>PRK11415 hypothetical protein; Provisional
Probab=72.99 E-value=24 Score=25.63 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKA--------EKNELREEKLILKADKEKLE 139 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~--------eknELr~Ek~~Lk~e~e~L~ 139 (200)
...+|.++...|..+|..+.. ++.+|+-++..||-++.++-
T Consensus 18 ~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L 66 (74)
T PRK11415 18 RFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKIL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444555555555544433 45556666666665555543
No 330
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=72.82 E-value=24 Score=32.60 Aligned_cols=52 Identities=33% Similarity=0.415 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|..|..++..-.+++...+++|..|..++-.|+.....+-.|.|.|.+.|..
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3334444444444455556666666666666666555555666666655544
No 331
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.39 E-value=34 Score=29.64 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSL--KAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L--~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
-+-+|+ +++.+++.|+.+.+.|++-.+.- ..++-++..|....+.|+|.++.|++.+...
T Consensus 130 vT~~y~-D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 130 VTEQYV-DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444 78888888888777776654422 2345578889999999999999999998544
No 332
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=72.36 E-value=20 Score=27.06 Aligned_cols=40 Identities=35% Similarity=0.539 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
+.+|++|+. .++..|+...+.+..++..++.+++.+.+..
T Consensus 75 ~~eA~~~l~---~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 75 LEEAIEFLK---KRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777754 3444555555555555555555554444433
No 333
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.28 E-value=33 Score=24.83 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
-+.|.+|+.++.=.+...+.|.+.+-+...++..|+.+...|...+..++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35777888888888888888887777777778888777777766655554
No 334
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=72.20 E-value=27 Score=31.90 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
+...+.++.+++.....|+.+.++...+++
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~ 266 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQ 266 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 335
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=71.83 E-value=49 Score=26.92 Aligned_cols=62 Identities=26% Similarity=0.269 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 84 AILDDAIRVLNQLRTESQE-LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~-L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.....+|.-|-.|.+.+=. ..+....|+.+.+-|+..+-.+++--..=+..++.|+.||+.+
T Consensus 63 ~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 63 MFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3777888888888887544 3345666777777777777777666666678899999999864
No 336
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=71.77 E-value=36 Score=32.15 Aligned_cols=30 Identities=40% Similarity=0.418 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.|.+++++|+.++.+|.++...++.++..+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444443
No 337
>PRK00295 hypothetical protein; Provisional
Probab=71.67 E-value=34 Score=24.50 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
-|.+|+.++.-++...+.|...+-+...++..|+.+...|...+..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888888888888888888888888888888887777766666655
No 338
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=71.64 E-value=36 Score=31.29 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 028999 85 ILDDAIRVLN 94 (200)
Q Consensus 85 IL~dAI~YIk 94 (200)
+|.+.+.-+.
T Consensus 17 ~lk~~~~e~~ 26 (294)
T COG1340 17 QLKEEIEELK 26 (294)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 339
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.59 E-value=24 Score=34.39 Aligned_cols=33 Identities=36% Similarity=0.366 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
++.|+..++.|..|..+||...+.||+.+++|.
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666654
No 340
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=71.21 E-value=33 Score=34.26 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=50.6
Q ss_pred HHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 61 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 61 iNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
|++-|..|..+- -.-.....+.++|..|=....+++.--+.|......+..+++..-.++|.|-++.+.|..+|.
T Consensus 112 L~~Ff~alq~la-~~P~~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~ 186 (626)
T PRK08871 112 LNEWFDAVKTLA-DSPNDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMM 186 (626)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554 111123567788998888888777777777777777777777777777777777777776664
No 341
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=71.15 E-value=24 Score=34.36 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
-+|+..|-..+++.....+++...+..|.....|++++...+.-+++.|.++
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~ 482 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER 482 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555555544444444555555555555555555555555444444433
No 342
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.94 E-value=35 Score=28.92 Aligned_cols=19 Identities=37% Similarity=0.344 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 118 KAEKNELREEKLILKADKE 136 (200)
Q Consensus 118 ~~eknELr~Ek~~Lk~e~e 136 (200)
-.++++|+.++..|+.+++
T Consensus 109 l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 109 LEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 343
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=70.82 E-value=37 Score=24.88 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=7.5
Q ss_pred HHHHhHHHHhhhc
Q 028999 60 RLNDRFLDLSCIL 72 (200)
Q Consensus 60 kiNe~F~~Lr~lL 72 (200)
+||..+..|..++
T Consensus 7 ~in~~v~~l~k~~ 19 (102)
T PF14523_consen 7 KINQNVSQLEKLV 19 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666555
No 344
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.70 E-value=29 Score=33.88 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028999 128 KLILKADKEKLEQQLKVM 145 (200)
Q Consensus 128 k~~Lk~e~e~L~~qlk~~ 145 (200)
+.....+|..|+.||+.+
T Consensus 430 ~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 344556777788888764
No 345
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.65 E-value=23 Score=37.59 Aligned_cols=10 Identities=40% Similarity=0.571 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 028999 95 QLRTESQELK 104 (200)
Q Consensus 95 ~L~~~v~~L~ 104 (200)
+|+.+.+.|+
T Consensus 372 qlEqqN~rLK 381 (1243)
T KOG0971|consen 372 QLEQQNARLK 381 (1243)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 346
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.62 E-value=42 Score=35.14 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=38.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEI-------KSLKAEKNELREEKLILKADKEKLEQQLKVMAM 147 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei-------~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~ 147 (200)
++=-.+=.-|-+|+.+|...++.++.....+..++ ++|+.|..+|.++.....+++..|..|+..+-.
T Consensus 639 ~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 639 TEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566788877777777776555444444 444445555555555555555556666655533
No 347
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.51 E-value=58 Score=31.61 Aligned_cols=88 Identities=20% Similarity=0.409 Sum_probs=53.4
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 56 LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 56 ~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~---~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.|-+.|++++..+..+. + |-. .-+.+-++|+.+++.+++.+.. ..+.|+.++..++.+..++-.+....+
T Consensus 301 ~~L~ele~RL~~l~~Lk---r--Kyg--~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLK---R--KYG--ASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777776665 2 211 2466778888888888877664 456677777777777776666555543
Q ss_pred HH-----HHHHHHHHHHhcCCCC
Q 028999 133 AD-----KEKLEQQLKVMAMPTG 150 (200)
Q Consensus 133 ~e-----~e~L~~qlk~~~~~p~ 150 (200)
.+ .+.+..+|+.+..+..
T Consensus 374 ~~~a~~l~~~v~~~l~~L~m~~~ 396 (563)
T TIGR00634 374 RKAAERLAKRVEQELKALAMEKA 396 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc
Confidence 22 2334556666554433
No 348
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=70.46 E-value=30 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
=+.+|..+|+.|....+++..++..++.....-.+|-.+-.+.++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777777777776666666666665555555444333
No 349
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=70.46 E-value=18 Score=34.90 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHhHHHHhhhc
Q 028999 49 SKACREKLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 49 sH~~~ER~RRekiNe~F~~Lr~lL 72 (200)
+|-..+.+....+...+.-|+..+
T Consensus 207 ~~~~~~l~~~~e~~~~l~l~~~~~ 230 (511)
T PF09787_consen 207 RHYIEYLRESGELQEQLELLKAEG 230 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355556666666666666666665
No 350
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=70.37 E-value=13 Score=33.57 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028999 124 LREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++.|...++.|+++++.+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 18 LEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444
No 351
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=70.36 E-value=35 Score=34.44 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 112 EEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+++++-.....+|..|...++.++.+|..++..
T Consensus 38 ~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k 70 (732)
T KOG0614|consen 38 AELRQRQTILEELIKEISKLEGEIAKLTNELDK 70 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 333333334444555555555555555555544
No 352
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=70.31 E-value=16 Score=36.29 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
+|.+-=-+||+++=.+++.|+++|+.+..++++++.++..++++
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555567888888888888888888888888887777777665
No 353
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.16 E-value=19 Score=26.39 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=38.4
Q ss_pred HHHHhHHHHhhhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRP--ARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~--~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
.+..-..+|..+- ++.. ....++=|+.+.-+++..|....+.++.+.+.|..+...+..++++++..
T Consensus 30 ~~~~~~~eL~~l~-~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 30 ELELTLEELEKLD-DDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHTSS-TT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666653 4321 12344445555556666677777666666666666666666666665543
No 354
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=70.08 E-value=34 Score=29.50 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.+|-..+..+...|......|-.+...|...+..|.+.+..|+.+...+
T Consensus 155 ~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~ 203 (206)
T PF14988_consen 155 DEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYL 203 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555556555555655555555555444
No 355
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=69.96 E-value=38 Score=31.89 Aligned_cols=32 Identities=38% Similarity=0.519 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
...+...+.+|.++...|+.++..|+.++...
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555666666555544
No 356
>PLN02678 seryl-tRNA synthetase
Probab=69.87 E-value=36 Score=32.76 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 116 SLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 116 ~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+|..+..+|.+|...|..+...++.++...
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666666553
No 357
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=69.82 E-value=20 Score=29.45 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 87 DDAIRVLNQLRTESQELKETN 107 (200)
Q Consensus 87 ~dAI~YIk~L~~~v~~L~~~~ 107 (200)
.....-.++|+.|+.+|++|.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~ 56 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKREL 56 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 344455566777777766654
No 358
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.81 E-value=34 Score=33.15 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
.|....+.|+.++...+.+++.+++
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 359
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.71 E-value=70 Score=31.31 Aligned_cols=83 Identities=22% Similarity=0.424 Sum_probs=60.2
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 59 ekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
+.|...|..+...+ .++...-+...+-+.++..++..++++...+.+.+..|+.+-.+.|+....++.++..+
T Consensus 354 ~~l~~~~~~~~~~i-------~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 354 KELEKRYEDLEERI-------EEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHH-------HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 23344555666677777778888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC
Q 028999 139 EQQLKVMAMP 148 (200)
Q Consensus 139 ~~qlk~~~~~ 148 (200)
...++..+.|
T Consensus 427 kR~lek~nLP 436 (560)
T PF06160_consen 427 KRRLEKSNLP 436 (560)
T ss_pred HHHHHHcCCC
Confidence 8888877666
No 360
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=69.68 E-value=36 Score=32.11 Aligned_cols=29 Identities=45% Similarity=0.503 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
+......|..++++|.++...|+.++++.
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444444433
No 361
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=69.31 E-value=12 Score=33.83 Aligned_cols=31 Identities=39% Similarity=0.510 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
++|+++.+++..|.++++.|...++.+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 9 RKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444455444
No 362
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.30 E-value=40 Score=31.99 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~ 111 (200)
|..-.+-|++-+.+.++|+..+++|.
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~ 112 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLK 112 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444444444444444443
No 363
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=68.98 E-value=44 Score=25.14 Aligned_cols=46 Identities=13% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
|.+|-..++.|....++|...++.++.++.--.+|..+-+++++..
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555544443
No 364
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=68.98 E-value=55 Score=25.75 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 100 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 100 v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
...|++....-...++.+.+|+.-|.=.|..|-..++.|+.++..
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555666666666666666777777777777664
No 365
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.97 E-value=62 Score=32.98 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=20.7
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKET 106 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~ 106 (200)
|+.|..+...|.... ..-...|.+.-+.++.|+...+.|.+.
T Consensus 560 r~ei~~rv~~Lk~~~-------e~Ql~~L~~l~e~~~~l~~~ae~LaeR 601 (717)
T PF10168_consen 560 REEIQRRVKLLKQQK-------EQQLKELQELQEERKSLRESAEKLAER 601 (717)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554 233344444555555555544444433
No 366
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=68.91 E-value=23 Score=37.70 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.+-+.+|..++.+|+.....|..+-..+.++..+.-.++..|+-++..|++|+
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i 316 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQI 316 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Confidence 344444444444444444333333333333333333333444444455555444
No 367
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.83 E-value=37 Score=31.20 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 123 ELREEKLILKADKEKLE 139 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~ 139 (200)
.|+++++.+++.+|.|.
T Consensus 95 ~Leddlsqt~aikeql~ 111 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555554444443
No 368
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=68.83 E-value=26 Score=27.56 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
.+.+.+.-|++..+.|...++.|..++.+++++...+...+..+.++.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777778888888888888888888888777777777777776643
No 369
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.82 E-value=54 Score=27.98 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+=..|+.-....+..+..|+.+...+...+..|+..+.+|+.+...++....-|....+.
T Consensus 86 LAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 86 LARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666667777777777777777777777777777777777777666655544
No 370
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.61 E-value=73 Score=31.16 Aligned_cols=52 Identities=31% Similarity=0.305 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+..|+..+++|+.++..|+..+..|+....+|..+.+++-.++|.|.-|+..
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4456667888889999999999999999999999888888888877655543
No 371
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=68.57 E-value=40 Score=33.84 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
.|++-|..|.++- -.-..-.-+..+|..|-..+.+++.--..|......+..+|...-.++|.|-++...|..+|
T Consensus 108 ~l~~ff~a~q~la-~~P~~~~~Rq~vl~~A~~L~~~fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~~qIA~LN~qI 182 (649)
T PRK12715 108 PLQTFFDSIGQLN-STPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNGKL 182 (649)
T ss_pred HHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444 10012355777888888888777777777777666677777766677777776666665554
No 372
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=68.51 E-value=14 Score=30.53 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNE----KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 94 k~L~~~v~~L~~~~~----~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+|+.+...|++... ....|++.|...-..+.+-...|+++.|+-++++++
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA 112 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA 112 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh
Confidence 467777777776553 566778888877777777778888888888888876
No 373
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.42 E-value=68 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 127 EKLILKADKEKLEQQLKV 144 (200)
Q Consensus 127 Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+..+...+..|+++++.
T Consensus 190 kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 190 KNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445555555444
No 374
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=68.34 E-value=36 Score=31.38 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
-.+||--++.+.+..+.+..+|.+++..|+....++|.+....+.-+|-|.
T Consensus 62 ~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 62 ISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666666677777777777777777777777777766665554444443
No 375
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.14 E-value=87 Score=33.70 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+...-..+.+++.+...++.+...+..++..|+.+++++..+...|+.+.+..+.++..
T Consensus 306 ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~ 365 (1311)
T TIGR00606 306 LYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRA 365 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556777777777777888888888888888888888887777776666555544
No 376
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=68.13 E-value=1.8 Score=33.76 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 103 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|+.++-.+-.++..|..+++.|+.|...|+.+.+.|+.+...
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ---------------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444444555555555555555555555555554443
No 377
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=68.11 E-value=41 Score=27.63 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=41.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNE-KLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~-~L~~ei~~L~~eknELr~Ek~~L 131 (200)
.|-..+=..--+|+.+++-+..+..-+|. .|++...+|+.|.|.+|.|-..+
T Consensus 52 ~d~~~lr~~L~~YLD~IKm~RAkY~lENky~L~~tL~~LtkEVn~Wr~ewd~i 104 (132)
T PF09432_consen 52 TDTEELRAQLDRYLDDIKMERAKYSLENKYSLQDTLNQLTKEVNYWRKEWDNI 104 (132)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556677899999998888887776 58888999999999999887654
No 378
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=67.95 E-value=10 Score=27.01 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+||.+....|++||+|+++.+.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 379
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=67.76 E-value=14 Score=27.57 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
|+++++.|+.++..+++++..+++++.
T Consensus 75 l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433
No 380
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.74 E-value=33 Score=38.83 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.|...+.++..-+.||...+-.|..+++.|+.+|..
T Consensus 1502 dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1502 DLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444455555544443
No 381
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=67.61 E-value=28 Score=35.93 Aligned_cols=53 Identities=36% Similarity=0.429 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK---LILKADKEKLEQQLKV 144 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek---~~Lk~e~e~L~~qlk~ 144 (200)
-|..|+-++..|+.....|-+++-.|+.|..+|+++. ..++++.+.|.|.+.+
T Consensus 867 Elthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a 922 (961)
T KOG4673|consen 867 ELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAA 922 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777776654 3567777777765544
No 382
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.58 E-value=93 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCC
Q 028999 123 ELREEKLILKADKEKLEQQLKVM--AMPTGGYM 153 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~~qlk~~--~~~p~g~~ 153 (200)
+++.+...++.+++.++.++... .+|-.|.+
T Consensus 250 ~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 250 EAQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 33444445555555555555543 35555654
No 383
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=67.51 E-value=38 Score=36.56 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL--------KADKEKLEQQLKVM 145 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L--------k~e~e~L~~qlk~~ 145 (200)
.|.+..+-|..|+.....--....+.-.....|.+|+.-||.|+.++ .++||+|++||+.+
T Consensus 1104 LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~ 1172 (1439)
T PF12252_consen 1104 LITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVI 1172 (1439)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHh
Confidence 55555666666654211111112222223334444445555555544 38999999999875
No 384
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=66.83 E-value=43 Score=32.49 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 028999 133 ADKEKLEQQL 142 (200)
Q Consensus 133 ~e~e~L~~ql 142 (200)
.++.++..+|
T Consensus 344 ~eL~~~r~eL 353 (522)
T PF05701_consen 344 AELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 385
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=66.80 E-value=67 Score=25.98 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=41.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 79 RTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIK-----SLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 79 K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~-----~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
...|..++..--.-|.+|..+.++|+-+...+..+.. .+..=...+..|++.+...+..|.+|++.+
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666777777776665555554443 233333445666777777777777777665
No 386
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.78 E-value=38 Score=26.61 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=2.9
Q ss_pred HHHHhhh
Q 028999 65 FLDLSCI 71 (200)
Q Consensus 65 F~~Lr~l 71 (200)
+.+|..+
T Consensus 44 ~~EL~~L 50 (121)
T PRK09343 44 LEELEKL 50 (121)
T ss_pred HHHHHcC
Confidence 3444433
No 387
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=66.74 E-value=31 Score=28.07 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 52 CREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIR----VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~----YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
..|=+|=..|+.+|..=..... -+.++|..-|+ .|+..+..+++|+.+...-..+|..|+.++.++...
T Consensus 51 VsEL~~Ls~LK~~y~~~~~~~~-------~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 51 VSELRRLSELKRRYRKKQSDPS-------PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554333221 22334443333 333334444444444444444455555554444444
Q ss_pred HHHH
Q 028999 128 KLIL 131 (200)
Q Consensus 128 k~~L 131 (200)
|..|
T Consensus 124 n~~L 127 (131)
T PF04859_consen 124 NKSL 127 (131)
T ss_pred HHHh
Confidence 4433
No 388
>PRK00736 hypothetical protein; Provisional
Probab=66.66 E-value=45 Score=23.89 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+.|.+|+.++.-++...+.|...+-+-..++..|+.+...|...+..++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788888888888888888888877778888888777777665555443
No 389
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=66.56 E-value=29 Score=35.24 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
.+++|+.++.+|+.+....++++..|..+..+||.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554443
No 390
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.53 E-value=28 Score=34.31 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=6.2
Q ss_pred CChhhHHHHHHH
Q 028999 80 TDKPAILDDAIR 91 (200)
Q Consensus 80 ~dKasIL~dAI~ 91 (200)
.+...+|.+||.
T Consensus 165 ~~~~~~l~~Ai~ 176 (650)
T TIGR03185 165 DRLASLLKEAIE 176 (650)
T ss_pred ccchHHHHHHHH
Confidence 344455666643
No 391
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=66.47 E-value=26 Score=32.28 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
|.++=++|..-|.+|+.++++|++++.+-+-+++.|.
T Consensus 9 KeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlE 45 (307)
T PF10481_consen 9 KEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLE 45 (307)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445568899999999999999988765444443333
No 392
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.43 E-value=72 Score=33.88 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~L 131 (200)
.+.++..++.+++++...+
T Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (1163)
T COG1196 461 RLKELERELAELQEELQRL 479 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 393
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=66.39 E-value=22 Score=30.95 Aligned_cols=46 Identities=37% Similarity=0.447 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQE-LK---ETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 91 ~YIk~L~~~v~~-L~---~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
.|=+.|-++.+. |. .+|+.|..+|..+..|++.|++|+..|+.-.+
T Consensus 107 ~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 107 NYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666443322 22 35566666666666666666666666654333
No 394
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=66.37 E-value=60 Score=25.37 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
...++.++..+.++..+|..++..|++++++|+..
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444555555555555555555555444
No 395
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=66.36 E-value=69 Score=25.91 Aligned_cols=75 Identities=24% Similarity=0.321 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 50 KACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 50 H~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
|-.+|..+ -+++.+..|-+.| ++.--|.-+|..+. .+..-++++....+-..-|-.|+.|+|-|.+|+-
T Consensus 45 qqLreQqk--~L~e~i~~LE~RL---RaGlCDRC~VtqE~------akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~ 113 (120)
T PF10482_consen 45 QQLREQQK--TLHENIKVLENRL---RAGLCDRCTVTQEL------AKKKQQEFESSHLQSLQHIFELTNEMNTLKEENK 113 (120)
T ss_pred HHHHHHHH--HHHHHHHHHHHHH---hcccchHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44444443 4666666676666 22234555554433 2344556666665555667888888888888888
Q ss_pred HHHHHH
Q 028999 130 ILKADK 135 (200)
Q Consensus 130 ~Lk~e~ 135 (200)
.|+.|+
T Consensus 114 ~L~eEl 119 (120)
T PF10482_consen 114 KLKEEL 119 (120)
T ss_pred HHHHHh
Confidence 887664
No 396
>PRK14011 prefoldin subunit alpha; Provisional
Probab=66.35 E-value=40 Score=27.65 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.+|++|+ +.+++.|++..++|...+.++..+.++++.+. +...+.++++.
T Consensus 86 ~~eA~~~~---~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L---~~k~~~~~~~~ 136 (144)
T PRK14011 86 VSEVIEDF---KKSVEELDKTKKEGNKKIEELNKEITKLRKEL---EKRAQAIEQRQ 136 (144)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 56777764 56778888888888888888888888887763 33344444433
No 397
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=65.75 E-value=10 Score=35.80 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 112 EEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.|.-.|++|...|+.|+..|+.+.++|+..++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
No 398
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=65.70 E-value=59 Score=26.11 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..|++-|..|+.++..++.. +..+|..++. .+..+...|+.+++.|+..|+..
T Consensus 5 a~~al~ki~~l~~~~~~i~~~---~~~~I~~i~~---~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAE---ANDEIARIKE---WYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777776666653 3445544433 34456678888999999888875
No 399
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=65.62 E-value=6.4 Score=38.40 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+|++|++|+++|+++...|+..+++.++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 4555555555555555555544555443
No 400
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.55 E-value=85 Score=27.08 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 028999 133 ADKEKLEQQLK 143 (200)
Q Consensus 133 ~e~e~L~~qlk 143 (200)
..|..|.++|+
T Consensus 176 ~~i~~L~~~lk 186 (237)
T PF00261_consen 176 EKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 401
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=65.29 E-value=18 Score=36.62 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
+|-.+|++|..+++-|+-|....++.+-.|
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Kl 355 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKL 355 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHH
Confidence 455555555555555554444444433333
No 402
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=65.21 E-value=30 Score=28.16 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.++..++....-.++|+.|...=.+|+..|..+|..
T Consensus 84 e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555554445555555555544
No 403
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=65.18 E-value=9.6 Score=32.35 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=38.6
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETN--EKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 59 ekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~--~~L~~ei~~L~~eknELr~Ek~ 129 (200)
.++|+.+.+|.+.| - + .+||-.|..+..--+..+ -++..++-++..++.+.+++..
T Consensus 59 a~lnkAY~TLk~pL-~-R-------------A~Yilkl~g~e~~sne~stDpe~Lmevle~~E~IS~~~De~~ 116 (168)
T KOG3192|consen 59 AELNKAYDTLKDPL-A-R-------------ARYLLKLKGQEQTSNELSTDPEFLMEVLEYHEAISEMDDEED 116 (168)
T ss_pred HHHHHHHHHHHhHH-H-H-------------HHHHHHHhCCCCchhhhccCHHHHHHHHHHHHHHHhccCcHH
Confidence 46899999999988 2 1 278888887433322222 2677778888888888777665
No 404
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.16 E-value=24 Score=34.19 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L 117 (200)
...||.+.+. +..|+.+.+++..+...++.+++++
T Consensus 146 ~~~lLD~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l 180 (563)
T TIGR00634 146 QRQLLDTFAG-ANEKVKAYRELYQAWLKARQQLKDR 180 (563)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444 3344444444333333333333333
No 405
>PLN02320 seryl-tRNA synthetase
Probab=65.15 E-value=1e+02 Score=30.24 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEI---------KSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei---------~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++|+.++++|+.+...+-.++ .+|..+..+|+++...|+.+...++.++..+
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555444333333 3455555566666666666666666666553
No 406
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.00 E-value=41 Score=30.27 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
.|+.++..+++...+|+.|++.+....+..+.+-..-.+++|+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 5677777777777777788877777777777333444445554
No 407
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=64.98 E-value=6.9 Score=36.24 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
+|||=|+.+|.=|+.+|..|-+|++.||.
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 89999999999999999999888777753
No 408
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=64.90 E-value=43 Score=26.83 Aligned_cols=50 Identities=28% Similarity=0.346 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
+||-.|... |-.|..++..|-.+...|.+.+.+|-.|.+-|+-|+..|+.
T Consensus 1 mdKkeiFd~----v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 1 MDKKEIFDQ----VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred CCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 355555533 33445555555555555555555555555555555555543
No 409
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.76 E-value=34 Score=25.93 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+.|...++.|+...+.|+.++..+..++++++...+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666666655433
No 410
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=64.69 E-value=68 Score=28.11 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
-..-..|+.-+..|+..+..++..+..+.+.+..|+..+.+|......+++.++-|.
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777766666666655555555555555555544444444444443
No 411
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=64.50 E-value=31 Score=28.55 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++++|+.+...+.+.|+.-+.++.||..+...+|.=+.|=++-..
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567888888888889998899999998888888766666554333
No 412
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.46 E-value=52 Score=29.22 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++.+.+.+...++-.+.++..++.|++.++.++.
T Consensus 161 ~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve 194 (243)
T cd07666 161 IQAELDSKVEALANKKADRDLLKEEIEKLEDKVE 194 (243)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333344444455555555554443
No 413
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.40 E-value=19 Score=38.29 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028999 77 PARTDKPAILDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 77 ~~K~dKasIL~dAI~YIk~L~~~v~~L~ 104 (200)
+.|+.|.++|.|=+.-|..|+..+...+
T Consensus 397 NQkl~K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 397 NQKLMKKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678999999999998888888765444
No 414
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=64.29 E-value=2.4 Score=33.08 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
.+|..+...+.++...|+.++..|+.++.+|+++...|..+.
T Consensus 2 ~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 2 QELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp -----------------------------------------H
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555555555555554443
No 415
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.24 E-value=52 Score=35.08 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 51 ACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 130 (200)
Q Consensus 51 ~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~ 130 (200)
......++..+-+.+..|++.+.-.. .-+..|+++++.....++.++.++..++.+..++..+...
T Consensus 624 ~~~l~~~~~~~ee~~~~~~~~~~~~~--------------~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~ 689 (1072)
T KOG0979|consen 624 SPVLEELDNRIEEEIQKLKAEIDIRS--------------STLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKS 689 (1072)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 028999 131 LKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 131 Lk~e~e~L~~qlk~~~~~ 148 (200)
.++..++++.+...+.++
T Consensus 690 ~~~r~~~ie~~~~~l~~q 707 (1072)
T KOG0979|consen 690 YQQRKERIENLVVDLDRQ 707 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH
No 416
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.96 E-value=92 Score=31.13 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=49.1
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAIL-----------DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL-----------~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
..|+....+...| . .|++-.+.+ .|+=.-|+.+.-++++|..........-++|++|..|+.|..
T Consensus 209 dtN~q~~s~~eel-~---~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 209 DTNTQARSGQEEL-Q---SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566666666666 2 244444433 333333344444444444433333444577888888888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028999 129 LILKADKEKLEQQLKVM 145 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk~~ 145 (200)
+.+-+..+.-+.+||.+
T Consensus 285 AE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 285 AECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88877778788888775
No 417
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.91 E-value=68 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 123 ELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++..+.+.+..++|..++++..
T Consensus 298 ~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554
No 418
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=63.86 E-value=4.1 Score=31.30 Aligned_cols=42 Identities=36% Similarity=0.574 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
.|...+..+..|..++..|+.++..|+.++..++.....|+.
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 344444444555555555555554444444444444444433
No 419
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=63.73 E-value=51 Score=23.47 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L 117 (200)
++++++..++...+.+.+.+..|
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~l 25 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKL 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333
No 420
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=63.59 E-value=27 Score=34.11 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.|+...+.|+.+++.|.+.+..|++.+.|+|.+...||+..+-++
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q 454 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQ 454 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667778888888888888888888888888888887776554
No 421
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.42 E-value=44 Score=25.23 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKN 122 (200)
Q Consensus 109 ~L~~ei~~L~~ekn 122 (200)
.+++.+..|..|++
T Consensus 28 ~lE~k~~rl~~Ek~ 41 (96)
T PF08647_consen 28 ILEQKKLRLEAEKA 41 (96)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 422
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.41 E-value=46 Score=30.52 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+-.|.|. |.+|++.+.+++.++.....+...++.....|+.|...|+.++.....-+..
T Consensus 114 vd~Lkd~---lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 114 VDLLKDK---LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345444 4566666777777766666667777777777888888888888777776655
No 423
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.39 E-value=49 Score=29.66 Aligned_cols=7 Identities=14% Similarity=-0.050 Sum_probs=2.7
Q ss_pred HHHhhhc
Q 028999 66 LDLSCIL 72 (200)
Q Consensus 66 ~~Lr~lL 72 (200)
..|.+.+
T Consensus 98 ~~l~~~~ 104 (423)
T TIGR01843 98 ARLRAEA 104 (423)
T ss_pred HHHHHHH
Confidence 3443333
No 424
>PF15058 Speriolin_N: Speriolin N terminus
Probab=63.28 E-value=29 Score=30.26 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEI 114 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei 114 (200)
|+.+++.|-.+|+.|+..+
T Consensus 10 lrhqierLv~ENeeLKKlV 28 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLV 28 (200)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 4555666666666655544
No 425
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=63.19 E-value=13 Score=27.78 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.+|+.++.+|+++...+..+++-++.++
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333333
No 426
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.18 E-value=53 Score=34.50 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=40.4
Q ss_pred ChhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIR----VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 81 dKasIL~dAI~----YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
...+.|..|.. .++.|+.++.+|..+.+.-..+++-+..++.||+++...+...++.|
T Consensus 528 ~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 528 QRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556665543 35677888888998888888888888888888888776555444433
No 427
>PF13514 AAA_27: AAA domain
Probab=63.18 E-value=62 Score=34.10 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=46.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~---~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
..+...|..++.-+++++.++.+... ....+..+...+..++++++.+...++.+..+|+.
T Consensus 146 rg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler 209 (1111)
T PF13514_consen 146 RGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLER 209 (1111)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666899999999999999888774 44566777777777777777777777766666654
No 428
>PLN02678 seryl-tRNA synthetase
Probab=63.14 E-value=67 Score=30.93 Aligned_cols=30 Identities=33% Similarity=0.226 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.|.+++++|+.++.+|..+...++.++..+
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555443
No 429
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=63.00 E-value=38 Score=29.94 Aligned_cols=43 Identities=28% Similarity=0.513 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 130 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~ 130 (200)
+|..++ ..|+..+..|+.....+...+..|..|+.+|..+...
T Consensus 205 ~L~~~~---~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~e 247 (254)
T PF15458_consen 205 SLSECL---ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKE 247 (254)
T ss_pred chhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 4455555555555555555555555554444443333
No 430
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.94 E-value=36 Score=26.05 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
.|+..++.+--+-|..+...+..|+.....|+.++.++...+
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333344444444444444444444444333
No 431
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.91 E-value=66 Score=30.66 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhHHHHhhhc
Q 028999 51 ACREKLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 51 ~~~ER~RRekiNe~F~~Lr~lL 72 (200)
.......+..+...+.+|.++-
T Consensus 204 ~~~~~~~~~~l~~~~~el~eik 225 (395)
T PF10267_consen 204 SSVSSQQNLGLQKILEELREIK 225 (395)
T ss_pred ccccccccchHHHHHHHHHHHH
Confidence 4556666666776767766654
No 432
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=62.82 E-value=60 Score=35.23 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~ 104 (200)
..-|.++++-+.+++..++.|+
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~ 243 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLE 243 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 433
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=62.50 E-value=50 Score=27.13 Aligned_cols=7 Identities=14% Similarity=0.942 Sum_probs=0.0
Q ss_pred CCCcccc
Q 028999 175 LMPMWQY 181 (200)
Q Consensus 175 ~~~mwq~ 181 (200)
|++.|.|
T Consensus 151 si~~W~~ 157 (161)
T PF04420_consen 151 SITVWLF 157 (161)
T ss_dssp -------
T ss_pred ehHHHHH
Confidence 4567875
No 434
>PRK01156 chromosome segregation protein; Provisional
Probab=62.38 E-value=61 Score=32.93 Aligned_cols=26 Identities=19% Similarity=0.014 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 115 KSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
..+..+++++..+...++.+++.|+.
T Consensus 214 ~~l~~~i~~~~~el~~~~~~l~~l~~ 239 (895)
T PRK01156 214 SITLKEIERLSIEYNNAMDDYNNLKS 239 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444443
No 435
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=62.35 E-value=36 Score=31.29 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
|.+|..++.--++.++.|.....+|-.-+.||.++...++..|--|+++|+
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lk 288 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLK 288 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 333443333333444455544445544455555544444433333444433
No 436
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=62.19 E-value=14 Score=26.79 Aligned_cols=36 Identities=42% Similarity=0.447 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
-.-|..|+...+. |.+|.+...-|+.||..|++|.+
T Consensus 14 ~~~i~~d~Lslls-----V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 14 GHEIGNDALSLLS-----VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred ccccchhHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666644433 45555555555555555555544
No 437
>PRK14160 heat shock protein GrpE; Provisional
Probab=62.18 E-value=41 Score=29.37 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.5
Q ss_pred cCcccCC
Q 028999 191 RDHELRP 197 (200)
Q Consensus 191 ~d~~~~p 197 (200)
.|-+|||
T Consensus 198 ~dRVLRp 204 (211)
T PRK14160 198 GDKVIRY 204 (211)
T ss_pred CCEeeec
Confidence 3445555
No 438
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=62.17 E-value=20 Score=25.91 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 121 KNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 121 knELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..||.+....|+.||+||+.|+..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888888888888888864
No 439
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.13 E-value=78 Score=31.16 Aligned_cols=43 Identities=30% Similarity=0.323 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 028999 87 DDAIRVLNQLRTESQELKETNEKLQEEIKSL----KAEKNELREEKL 129 (200)
Q Consensus 87 ~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L----~~eknELr~Ek~ 129 (200)
.+.-.|+.+|...+..+......|..+.+.. .+++-.|++++.
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~ 335 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELK 335 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444788888888887777666665554333 334444555443
No 440
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.13 E-value=48 Score=31.60 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~ 111 (200)
..|...-+-+++++.....|+...+.|+
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554444444
No 441
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=62.02 E-value=68 Score=31.33 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+.+-+.-+++.+..++++......+.+.+.++..+..+++.....|..+.-.|+.++.
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555444444443
No 442
>PHA03247 large tegument protein UL36; Provisional
Probab=61.98 E-value=74 Score=37.48 Aligned_cols=92 Identities=20% Similarity=0.301 Sum_probs=65.4
Q ss_pred HhHHHHhhhcCCC------------CCCCCChhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 028999 63 DRFLDLSCILEPG------------RPARTDKPAILDDAIRVLNQLRTESQELK----------ETNEKLQEEIKSLKAE 120 (200)
Q Consensus 63 e~F~~Lr~lLpP~------------~~~K~dKasIL~dAI~YIk~L~~~v~~L~----------~~~~~L~~ei~~L~~e 120 (200)
++|++|.+.|..- ...-.|-..++..+|+--.+|-.++.-|. +..+.|....++++.-
T Consensus 917 ~RF~~LsAAv~qa~~~~~~~~p~~~~~~~~~~~~l~~~~~r~aed~vrqak~l~~~~~~~~Ls~e~r~rl~~r~~evEt~ 996 (3151)
T PHA03247 917 ERFEALDAALRQELESEAAFVPAPGAAPYADAGGLSPETRRLAEDALRQAKAMAAAKLTDELSPEARERLRARARAIEAM 996 (3151)
T ss_pred HHHHHHHHHHHHHhhhhhhcCcccccccccccccchHHHHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHHHH
Confidence 5788888877321 01123334455666666666655555554 3456778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 028999 121 KNELREEKLILKADKEKLEQQLKVMAMPTGGYMP 154 (200)
Q Consensus 121 knELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~~ 154 (200)
.+++|.....+|.-.+++.+.|+.+-.|-.||.-
T Consensus 997 ~~~aR~r~~~i~~~r~~~y~~L~~lLrPl~~FvG 1030 (3151)
T PHA03247 997 LEEARERAEAARAARERFFQKLQGVLRPLPDFGG 1030 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999998777777743
No 443
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=61.91 E-value=35 Score=23.68 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028999 129 LILKADKEKLEQQLKVM 145 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk~~ 145 (200)
..+-.++..|+++.+.+
T Consensus 53 ~~~~~~~k~l~~~Wk~i 69 (77)
T PF03993_consen 53 KEAAEEIKELQQEWKEI 69 (77)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 45556677777787766
No 444
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=61.89 E-value=54 Score=23.13 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 116 SLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 116 ~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
---..+|+++..+..|.+.++.|++|++-
T Consensus 24 ~~GrgL~~Wk~~Kp~l~~ki~~l~~~~Q~ 52 (57)
T PF10549_consen 24 LCGRGLNRWKWKKPQLEQKIEELEEQLQI 52 (57)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 34457889999999999999999998873
No 445
>PRK04863 mukB cell division protein MukB; Provisional
Probab=61.81 E-value=55 Score=36.14 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=7.3
Q ss_pred HHHHHHHhHHHHhhhc
Q 028999 57 RRERLNDRFLDLSCIL 72 (200)
Q Consensus 57 RRekiNe~F~~Lr~lL 72 (200)
+..+|++.+.+|..-+
T Consensus 308 nL~rI~diL~ELe~rL 323 (1486)
T PRK04863 308 RLVEMARELAELNEAE 323 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 446
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.67 E-value=56 Score=29.49 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.....|+.++.+|.+.+...++|...|.
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666655443
No 447
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.56 E-value=21 Score=27.12 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=8.0
Q ss_pred HHHHhHHHHhhhc
Q 028999 60 RLNDRFLDLSCIL 72 (200)
Q Consensus 60 kiNe~F~~Lr~lL 72 (200)
.|..+|++|-.|+
T Consensus 31 ~v~~kLneLd~Li 43 (109)
T PF03980_consen 31 DVVEKLNELDKLI 43 (109)
T ss_pred hHHHHHHHHHHHH
Confidence 3556666666666
No 448
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=61.46 E-value=2.7 Score=37.40 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
.=..|.+...++..|+...+.|..+.+.|+.|+..|+.||++|
T Consensus 120 dKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 120 DKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666555555555555555555555
No 449
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.46 E-value=66 Score=33.03 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.-|.+|+.++..++......+.+.+.|....++|+.++..+..+..+|..++|.
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555555666666666666666665555555555555444
No 450
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=61.33 E-value=18 Score=26.97 Aligned_cols=21 Identities=48% Similarity=0.730 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 102 ELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~ekn 122 (200)
+|.++|..|+.+++.|++|+.
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 451
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=61.20 E-value=54 Score=24.11 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
..+..|..+++.|..+.+.+..++..+++
T Consensus 3 kdv~~l~~EkeeL~~klk~~qeel~~~k~ 31 (69)
T PF08912_consen 3 KDVANLAKEKEELNNKLKKQQEELQKLKE 31 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 452
>PLN02320 seryl-tRNA synthetase
Probab=61.12 E-value=60 Score=31.89 Aligned_cols=32 Identities=31% Similarity=0.242 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.|.++.++|+.++.+|.++...++.++..+-.
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666665555555555544433
No 453
>PRK14161 heat shock protein GrpE; Provisional
Probab=61.12 E-value=43 Score=28.38 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
-.+|..=+-+-+..++.+++.|+.+.+.|+.....+.++..-+|
T Consensus 10 ~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 10 EQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433344444555555555555555555544444444443
No 454
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=61.09 E-value=39 Score=25.45 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+.+.++-++.....|+..++.+..++.++.++...+...++.+.+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555666666666666666666666666665555555544
No 455
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=60.98 E-value=1.1e+02 Score=28.96 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 123 ELREEKLILKADKEKLE 139 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~ 139 (200)
++.+|...|..+++.|+
T Consensus 96 ~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 96 ELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666666666
No 456
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.96 E-value=60 Score=28.15 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
+++++++.+|+.+..+.++....+
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 457
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=60.84 E-value=59 Score=27.44 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=28.3
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 59 ekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
+.|++++.....-|+--...=-.=.-+++++-+-|..|..++ +.|......+.++.|-+++++
T Consensus 47 d~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~i-------Kdl~~lye~Vs~d~Npf~s~~ 109 (157)
T COG3352 47 DAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENI-------KDLVSLYELVSRDFNPFMSKT 109 (157)
T ss_pred HHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHhhh
Confidence 456677777766663110000011113444444444444444 444444444555555444443
No 458
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.79 E-value=1.7e+02 Score=28.86 Aligned_cols=11 Identities=18% Similarity=0.063 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 028999 128 KLILKADKEKL 138 (200)
Q Consensus 128 k~~Lk~e~e~L 138 (200)
...|+.|+.+|
T Consensus 437 I~dLqEQlrDl 447 (493)
T KOG0804|consen 437 ITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHhH
Confidence 34444444443
No 459
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=60.75 E-value=98 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~ 111 (200)
..++.++...++.|......|.
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~ 105 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALE 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 460
>PHA02557 22 prohead core protein; Provisional
Probab=60.73 E-value=1.4e+02 Score=27.39 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL-------ILKADKEKLEQQLKVM 145 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~-------~Lk~e~e~L~~qlk~~ 145 (200)
|=.+.++.|..|..++++.+.+...|..+...|+..++++..+.. ...+|++++..-+..+
T Consensus 135 vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egv 202 (271)
T PHA02557 135 VPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGL 202 (271)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhcc
Confidence 334556777777777777777777777777777777776654443 2347777776655544
No 461
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=60.63 E-value=63 Score=30.34 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=5.3
Q ss_pred CCCcccccCC
Q 028999 175 LMPMWQYLPP 184 (200)
Q Consensus 175 ~~~mwq~~pp 184 (200)
|+|++-.+|-
T Consensus 453 glpvLg~iP~ 462 (498)
T TIGR03007 453 GLPVLGVIPM 462 (498)
T ss_pred CCCeEEecCC
Confidence 4555555553
No 462
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=60.55 E-value=54 Score=28.79 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.-|..|+..+..++......+.++++.+..+...-...+..+.|+..|-
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888888888888888888887777776666555555555555543
No 463
>smart00340 HALZ homeobox associated leucin zipper.
Probab=60.31 E-value=23 Score=23.89 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 104 KETNEKLQEEIKSLKAEKNE 123 (200)
Q Consensus 104 ~~~~~~L~~ei~~L~~eknE 123 (200)
+...++|.++.+.|..|+.|
T Consensus 11 Krcce~LteeNrRL~ke~~e 30 (44)
T smart00340 11 KRCCESLTEENRRLQKEVQE 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444443334333333
No 464
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.23 E-value=72 Score=24.06 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.....-+..|+...+.+..+++.+..++.++..+...++.++..+
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555444
No 465
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.18 E-value=89 Score=30.94 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028999 124 LREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+.-+..|+.+++.+++++..+
T Consensus 235 i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 235 IKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444555555555555554
No 466
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=60.05 E-value=22 Score=32.37 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028999 82 KPAILDDAIRVLN-QLRTESQELK------ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGY 152 (200)
Q Consensus 82 KasIL~dAI~YIk-~L~~~v~~L~------~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~ 152 (200)
=..++++=|...+ .|+.+++.-+ +...+|++.+..|+.+..+|..+...|+...+.+.|++-......++.
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~~ 274 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQL 274 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445555555544 3444333222 234567777777777777888888888888888888776654444443
No 467
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=60.01 E-value=1.3e+02 Score=29.00 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKET 106 (200)
Q Consensus 59 ekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~ 106 (200)
..|...|..|-..+.-+.....+..+++..+..-|..|..++.+|+..
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~ 273 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEE 273 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544442222224567789999999999999988777653
No 468
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=59.93 E-value=48 Score=32.25 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCCCCCCChh---------------hHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 52 CREKLRRERLNDRFLDLSCILEPGRPARTDKP---------------AILDDA----IRVLNQLRTESQELKETNEKLQE 112 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKa---------------sIL~dA----I~YIk~L~~~v~~L~~~~~~L~~ 112 (200)
.-|.+=...||+-+...+.++ -+....+.=+ .++... -.+|+.|..++..+...++.
T Consensus 372 iDe~KL~~al~~~p~~v~~~F-~gd~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~--- 447 (483)
T COG1345 372 IDEAKLKAALNEDPDSVREFF-GGDGKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEA--- 447 (483)
T ss_pred ECHHHHHHHHHhChHHHHHHh-cCCccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHH---
Confidence 345555556777777777766 4311111111 222222 24555565555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 113 EIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
..+.++.+.+.|.+-...++++...|.||+..++
T Consensus 448 ~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~~ 481 (483)
T COG1345 448 AEERYKTQFNTLDDMMTQMNSQSSYLTQQLVSVS 481 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456788899999999999999999999988763
No 469
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=59.71 E-value=94 Score=27.01 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=58.4
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 56 LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 56 ~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
.||-+|.-.-.-+..+| - --.+++.-|.-.++.-..-+.+|..-+ ...+.+...|..++.+.+.+...|+.++
T Consensus 105 irR~~LeAQka~~eR~i-a---~~~~ra~~LqaDl~~~~~Q~~~va~~Q---~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLI-A---ESEARANRLQADLQIARQQQQQVAARQ---QQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777 2 135777777777776665555554433 3567778888888888888888888888
Q ss_pred HHHHHHHHH
Q 028999 136 EKLEQQLKV 144 (200)
Q Consensus 136 e~L~~qlk~ 144 (200)
..|+.|...
T Consensus 178 ~~Lq~q~~~ 186 (192)
T PF11180_consen 178 RQLQRQANE 186 (192)
T ss_pred HHHHHHhcC
Confidence 888887764
No 470
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=59.67 E-value=62 Score=32.42 Aligned_cols=56 Identities=30% Similarity=0.483 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE----------------------------LREEKLILKADKEKLEQQ 141 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknE----------------------------Lr~Ek~~Lk~e~e~L~~q 141 (200)
-+.+..|+.++..|+.++..|+.++..|..++.. -+.+...|++|+++|..+
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888887777777777755542 234556788899999888
Q ss_pred HHHh
Q 028999 142 LKVM 145 (200)
Q Consensus 142 lk~~ 145 (200)
++.+
T Consensus 582 l~~l 585 (722)
T PF05557_consen 582 LRSL 585 (722)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 471
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=59.64 E-value=33 Score=34.45 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
.+-|..|+.++..|+++.++|..|..++..++.++
T Consensus 510 Ld~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~ 544 (604)
T KOG3863|consen 510 LDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVM 544 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444433333333333
No 472
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.61 E-value=63 Score=31.56 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++.+.+.+.+..+.+..+..++...++.|+.+-...+..++++...+...
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444445555555555443
No 473
>PRK14126 cell division protein ZapA; Provisional
Probab=59.36 E-value=39 Score=25.14 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 124 LREEKLILKADKEKLEQQL 142 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~ql 142 (200)
+-+|...++.+.+.|++++
T Consensus 63 ia~El~k~~~~~~~l~~~~ 81 (85)
T PRK14126 63 VIHDYIKLKEEYEKLKESM 81 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 474
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=59.23 E-value=1.3e+02 Score=30.63 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhHHHHhhhcCCCC--------CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028999 50 KACREKLRRERLNDRFLDLSCILEPGR--------PARTDKPAILDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 50 H~~~ER~RRekiNe~F~~Lr~lLpP~~--------~~K~dKasIL~dAI~YIk~L~~~v~~L~ 104 (200)
|-..|+.|+ .--.+|.+++ |+. .++.|=-+++.-|+..|.+|+.+++.++
T Consensus 281 ~~~ve~ar~----~F~~EL~si~-p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 281 SELVEKARH----QFEQELESIL-PGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred HHHHHHHHH----HHHHHHHHhc-CCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666 3346899999 532 2234444789999999999999888855
No 475
>PRK10865 protein disaggregation chaperone; Provisional
Probab=59.07 E-value=1.3e+02 Score=31.10 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=14.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKE 105 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~ 105 (200)
+|-.+|.+.-+.|..|+.+.+.++.
T Consensus 407 ~kp~~L~rLer~l~~L~~E~e~l~~ 431 (857)
T PRK10865 407 SKPEELDRLDRRIIQLKLEQQALMK 431 (857)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445565555566666666555544
No 476
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=59.03 E-value=74 Score=26.96 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
|+.++++....|+.|..++..|+.+.+.+++|.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666666666555555544
No 477
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=58.98 E-value=41 Score=30.22 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
+.+-+.+..+|..+.+.|+.++..+.. +..+.+.|++|+.+|+...
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l~~~~~----~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKELAELEQ----LLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
No 478
>PRK11020 hypothetical protein; Provisional
Probab=58.96 E-value=66 Score=25.97 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=23.7
Q ss_pred HHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 62 NDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 62 Ne~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~ 111 (200)
+.-+..|.+.|+-++ ...-+++.....+.|.++..+++.|..+...|.
T Consensus 4 K~Eiq~L~drLD~~~--~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 4 KNEIKRLSDRLDAIR--HKLAAASLRGDAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554432 222344444445555555555555555555544
No 479
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.93 E-value=1.5e+02 Score=29.61 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHHhhhc
Q 028999 55 KLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lL 72 (200)
|.+...+...+.+|+...
T Consensus 294 ~~~l~~l~~~~~~l~~~y 311 (754)
T TIGR01005 294 RERQAELRATIADLSTTM 311 (754)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334445555555666655
No 480
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=58.69 E-value=1.3e+02 Score=28.32 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=8.2
Q ss_pred CCCcccccCCC
Q 028999 175 LMPMWQYLPPS 185 (200)
Q Consensus 175 ~~~mwq~~pp~ 185 (200)
|+-=||..||+
T Consensus 195 GvHrvqrvs~~ 205 (367)
T PRK00578 195 GVHRLVRISPF 205 (367)
T ss_pred ceEEEEecCCC
Confidence 66668888886
No 481
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=58.66 E-value=54 Score=30.34 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
...|..+.++|+.++..|..++...+..+..|..+|+.+
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345666667777777777777777777777777666664
No 482
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=58.56 E-value=92 Score=26.03 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|....+.|+...+++..-...-..+++.|+.++...
T Consensus 140 l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 140 LQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENL 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 344445555555555554444446666666666654
No 483
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=58.47 E-value=35 Score=33.10 Aligned_cols=51 Identities=27% Similarity=0.392 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+.+|..+.++++.+.+.|.+++++|..+-.++..+...++.+.+++.++..
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~ 228 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEED 228 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777777777777777777777777777777777765443
No 484
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.40 E-value=49 Score=35.28 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 112 EEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.|+.+|+..++.|..+...+...|..|+.|+.
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444443
No 485
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=58.34 E-value=86 Score=28.09 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL------------------------REEKLILKADKEKLEQQ 141 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL------------------------r~Ek~~Lk~e~e~L~~q 141 (200)
+..|.+.|..|+.+-+.|..+.+.|+.++.+-+.+++.+ .+...+=+.||..|+.+
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k 254 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERK 254 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 028999 142 LKVM 145 (200)
Q Consensus 142 lk~~ 145 (200)
++.+
T Consensus 255 ~~~L 258 (259)
T PF08657_consen 255 KREL 258 (259)
T ss_pred HHhc
No 486
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=58.11 E-value=96 Score=28.22 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 54 EKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKET-NEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 54 ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~-~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
|-.+.+.....|..+.+++.-.........+-|..||+-|.+-.. .+... .++|.+....+.....++......|.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ave~ia~~~~---~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~ 241 (276)
T PF05929_consen 165 EEEQEEEGKSLFSKVKALFKKKEASDDEQFADLQQAVEAIAEQQQ---ELEEAFEEQLSEQETQVAELKQELKEQHEALT 241 (276)
T ss_pred hhhcccchhhhhHHhhhhhcCCcCcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 334445567788888888833222222333456666665544333 22221 22343444444445556666667777
Q ss_pred HHHHHHHHHHHHh
Q 028999 133 ADKEKLEQQLKVM 145 (200)
Q Consensus 133 ~e~e~L~~qlk~~ 145 (200)
.+...|.++|...
T Consensus 242 ~~f~~L~~~L~~~ 254 (276)
T PF05929_consen 242 EDFAALKEKLSST 254 (276)
T ss_pred HHHHHHHHHhhCC
Confidence 7777777777643
No 487
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.00 E-value=48 Score=30.83 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.|..+++++++....|+..+.++.....++..+...|...++.|+...+.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45555555555555555555555555555555555555566666555444
No 488
>PF14645 Chibby: Chibby family
Probab=57.96 E-value=53 Score=25.97 Aligned_cols=19 Identities=47% Similarity=0.648 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEI 114 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei 114 (200)
|+++.++|+++|.-|+-++
T Consensus 76 l~~~n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKI 94 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 489
>PRK14153 heat shock protein GrpE; Provisional
Probab=57.87 E-value=32 Score=29.68 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKE--TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 98 ~~v~~L~~--~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.+.++|+. ++..+..++..|+.++.+|++...++++|.+.+...+.
T Consensus 24 ~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 24 EEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=57.85 E-value=79 Score=23.79 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 97 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..+++|.....+|...+..|....+.++.+++.-+.|-.+-.+.+...
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
No 491
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.59 E-value=65 Score=25.94 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 65 FLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 65 F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
|...+.+| -|++|-..+.+-=+-+..|..++..|++.-+.+++++++|+.+++.+
T Consensus 56 Yk~VG~ll-----vk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 56 YKKVGNLL-----VKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHhhhHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=57.54 E-value=83 Score=23.97 Aligned_cols=58 Identities=24% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+++++-.+-++-.+.=++.++++++++|+++...|+.|+.--..+.-.-+.....-+.
T Consensus 8 ~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
No 493
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=57.49 E-value=92 Score=26.27 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEI-----KSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei-----~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.-....+..|..++++|+...+.+..++ -.-+.|++|+......|.+-+.++++.+
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
No 494
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=57.34 E-value=1.1e+02 Score=29.70 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 85 ILDDAIRVLNQLRTESQELKE-TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~-~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|-.++-..+.++...+...+. .++.|-+.+.++.-.++||..|...|..|+..|..+-..+
T Consensus 49 ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rl 110 (421)
T KOG2685|consen 49 IRRESRLLVNETNALTDKMQRDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRL 110 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK14148 heat shock protein GrpE; Provisional
Probab=57.32 E-value=46 Score=28.70 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKET-----NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~~-----~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
||.--+..|...-..-..+...+++. .+.|++++..|+.+..+|++...++++|.+.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 11 DKSLDIETAAQVETAQESASGALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred ccccchHHHHHhhhcchhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.16 E-value=93 Score=29.79 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 55 KLRRERLNDRFLDLSCILEPGRPARTDK-----PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 55 R~RRekiNe~F~~Lr~lLpP~~~~K~dK-----asIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+-+++.+..++.-|.++- ........+ ..-+.+-.+++..+.++..++......|..++++++.++.+|+.+..
T Consensus 91 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 91 EDRGDALKALAKFLEDIR-EGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 028999 130 IL 131 (200)
Q Consensus 130 ~L 131 (200)
.|
T Consensus 170 ~l 171 (525)
T TIGR02231 170 AL 171 (525)
T ss_pred hh
No 497
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=57.16 E-value=1.7e+02 Score=27.52 Aligned_cols=94 Identities=27% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA----EKNELREEKLILKA 133 (200)
Q Consensus 59 ekiNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~----eknELr~Ek~~Lk~ 133 (200)
+.+...|.+|...+ .|+.-....|+..+..-+..++.+-...++++.....+.+-..-+.. -..++.+|...|..
T Consensus 10 ~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~~D~e~~~~a~~e~~~l~~ 89 (360)
T TIGR00019 10 ESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEE 89 (360)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 028999 134 DKEKLEQQLKVMAMPTGGY 152 (200)
Q Consensus 134 e~e~L~~qlk~~~~~p~g~ 152 (200)
++++++.+|+.+-.+..-+
T Consensus 90 ~~~~~e~~l~~~ll~~~~~ 108 (360)
T TIGR00019 90 KIEELEEQLKVLLLPKDPN 108 (360)
T ss_pred HHHHHHHHHHHHhCCCCCC
No 498
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.13 E-value=1.2e+02 Score=32.64 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 57 RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
+++.|-+...++.+-+ ..|+.++..+-.-+.++.......+.+...+..+...|+.+-+..+.+...++.++.
T Consensus 277 ~~eeLe~~~~et~~~~-------s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~ 349 (1072)
T KOG0979|consen 277 KKEELESEKKETRSKI-------SQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMIL 349 (1072)
T ss_pred hhhhHHhHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcCCCCCCCC
Q 028999 137 KLEQQLKVMAMPTGGYMP 154 (200)
Q Consensus 137 ~L~~qlk~~~~~p~g~~~ 154 (200)
.++..|+....++.+..+
T Consensus 350 ~~q~el~~~~~~e~~~~~ 367 (1072)
T KOG0979|consen 350 DAQAELQETEDPENPVEE 367 (1072)
T ss_pred HHHhhhhhcCCccccchh
No 499
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=56.93 E-value=83 Score=23.78 Aligned_cols=58 Identities=28% Similarity=0.287 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
+.++-|...++.++++-.+.+..-.....+..++..|..-.++|..=...|.....+|
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 500
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=56.92 E-value=41 Score=25.83 Aligned_cols=41 Identities=37% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
|.+|..+.+.|+.+.+.|+..+..|...+++++.=+..|+.
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~ 41 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLED 41 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!