Query 028999
Match_columns 200
No_of_seqs 200 out of 706
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkp_B MAX protein, MYC proto- 99.8 2.6E-19 8.9E-24 131.1 7.4 76 46-121 2-77 (83)
2 1am9_A Srebp-1A, protein (ster 99.8 5.8E-19 2E-23 129.8 8.4 71 46-117 6-76 (82)
3 1nkp_A C-MYC, MYC proto-oncoge 99.8 1.7E-18 6E-23 129.1 8.0 79 46-124 6-85 (88)
4 1nlw_A MAD protein, MAX dimeri 99.7 5.7E-18 1.9E-22 124.5 9.2 77 47-123 2-79 (80)
5 1hlo_A Protein (transcription 99.7 1.8E-17 6.1E-22 120.8 6.2 69 45-113 11-79 (80)
6 4ati_A MITF, microphthalmia-as 99.7 4.6E-17 1.6E-21 127.2 7.9 61 46-106 27-89 (118)
7 1an4_A Protein (upstream stimu 99.6 1.4E-16 5E-21 111.6 3.3 56 45-100 4-63 (65)
8 4h10_B Circadian locomoter out 99.6 2.9E-16 9.8E-21 113.6 4.7 58 46-104 8-65 (71)
9 1a0a_A BHLH, protein (phosphat 99.6 7.2E-16 2.4E-20 108.7 2.6 55 46-100 2-61 (63)
10 3u5v_A Protein MAX, transcript 99.5 4.1E-15 1.4E-19 108.4 3.8 60 45-104 4-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.5 3.8E-15 1.3E-19 108.0 1.3 54 46-99 9-64 (73)
12 1mdy_A Protein (MYOD BHLH doma 99.3 2.1E-13 7.1E-18 97.6 2.3 57 44-100 10-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 5.7E-12 2E-16 88.0 4.6 55 46-100 2-57 (60)
14 4ath_A MITF, microphthalmia-as 99.1 4.6E-10 1.6E-14 83.3 11.2 51 58-108 4-56 (83)
15 4f3l_A Mclock, circadian locom 99.1 5E-11 1.7E-15 105.1 5.6 53 46-99 12-64 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 5.6E-10 1.9E-14 99.7 3.3 54 46-99 13-68 (387)
17 2lfh_A DNA-binding protein inh 98.8 1.5E-09 5.2E-14 77.9 1.4 49 50-98 18-67 (68)
18 4aya_A DNA-binding protein inh 98.1 5E-06 1.7E-10 63.2 5.4 51 52-102 31-82 (97)
19 2jee_A YIIU; FTSZ, septum, coi 97.6 0.00053 1.8E-08 50.5 10.0 60 86-145 15-74 (81)
20 2jee_A YIIU; FTSZ, septum, coi 96.8 0.011 3.8E-07 43.5 9.2 56 90-145 5-67 (81)
21 3hnw_A Uncharacterized protein 96.6 0.021 7.3E-07 45.2 10.8 65 59-126 35-103 (138)
22 2wt7_A Proto-oncogene protein 96.6 0.017 5.7E-07 39.9 8.5 58 54-126 1-58 (63)
23 1gd2_E Transcription factor PA 96.4 0.0065 2.2E-07 43.4 5.6 42 90-131 28-69 (70)
24 2yy0_A C-MYC-binding protein; 95.7 0.019 6.4E-07 38.8 5.1 37 88-124 2-45 (53)
25 3hnw_A Uncharacterized protein 95.5 0.074 2.5E-06 42.1 8.8 52 93-144 84-135 (138)
26 1t2k_D Cyclic-AMP-dependent tr 95.5 0.045 1.5E-06 37.3 6.5 35 91-125 22-56 (61)
27 1go4_E MAD1 (mitotic arrest de 95.4 0.081 2.8E-06 40.2 8.3 56 91-146 12-95 (100)
28 3s9g_A Protein hexim1; cyclin 95.3 0.17 5.8E-06 38.6 9.5 63 79-145 29-91 (104)
29 3qh9_A Liprin-beta-2; coiled-c 95.2 0.19 6.4E-06 36.9 9.4 56 89-144 24-79 (81)
30 3a7p_A Autophagy protein 16; c 95.1 0.18 6.1E-06 40.9 10.0 86 57-144 36-121 (152)
31 1jnm_A Proto-oncogene C-JUN; B 94.7 0.037 1.3E-06 37.9 4.2 34 91-124 22-55 (62)
32 3nmd_A CGMP dependent protein 94.5 0.14 4.7E-06 36.9 7.0 49 92-140 20-68 (72)
33 1ci6_A Transcription factor AT 94.3 0.13 4.4E-06 35.5 6.2 19 94-112 26-44 (63)
34 3s4r_A Vimentin; alpha-helix, 94.1 0.44 1.5E-05 35.2 9.4 54 91-144 23-88 (93)
35 1gu4_A CAAT/enhancer binding p 94.1 0.46 1.6E-05 34.3 9.1 55 91-145 15-69 (78)
36 2oqq_A Transcription factor HY 93.9 0.2 6.7E-06 32.6 6.0 36 91-126 3-38 (42)
37 1hjb_A Ccaat/enhancer binding 93.5 0.67 2.3E-05 34.1 9.2 54 91-144 15-68 (87)
38 3oja_B Anopheles plasmodium-re 93.4 0.44 1.5E-05 43.5 10.1 37 109-145 541-577 (597)
39 1t2k_D Cyclic-AMP-dependent tr 93.4 0.28 9.5E-06 33.3 6.6 36 107-142 24-59 (61)
40 3cve_A Homer protein homolog 1 93.4 0.45 1.5E-05 34.1 7.9 49 95-143 4-52 (72)
41 1dh3_A Transcription factor CR 92.9 0.071 2.4E-06 36.0 2.9 28 91-118 22-49 (55)
42 3i00_A HIP-I, huntingtin-inter 92.7 1.6 5.4E-05 33.8 10.7 67 79-145 10-80 (120)
43 2dgc_A Protein (GCN4); basic d 92.5 0.16 5.4E-06 35.2 4.4 32 111-142 29-60 (63)
44 1ci6_A Transcription factor AT 92.5 0.98 3.3E-05 31.0 8.4 44 89-132 14-57 (63)
45 2wt7_A Proto-oncogene protein 92.1 0.6 2.1E-05 31.9 6.9 36 107-142 25-60 (63)
46 3i00_A HIP-I, huntingtin-inter 91.8 0.84 2.9E-05 35.4 8.2 50 82-131 31-80 (120)
47 4etp_A Kinesin-like protein KA 91.7 0.53 1.8E-05 42.7 8.1 53 93-145 5-57 (403)
48 2v66_B Nuclear distribution pr 91.7 1.2 4.1E-05 34.3 8.8 32 93-124 37-68 (111)
49 3q8t_A Beclin-1; autophagy, AT 91.7 1.1 3.7E-05 33.3 8.4 45 94-138 7-51 (96)
50 2wt7_B Transcription factor MA 91.6 1.5 5.1E-05 32.6 9.0 40 106-145 49-88 (90)
51 1jnm_A Proto-oncogene C-JUN; B 91.6 0.23 7.9E-06 33.8 4.3 32 109-140 26-57 (62)
52 3cvf_A Homer-3, homer protein 91.5 0.79 2.7E-05 33.3 7.3 48 96-143 11-58 (79)
53 3m91_A Proteasome-associated A 91.4 1 3.4E-05 30.2 7.1 40 92-138 10-49 (51)
54 3efg_A Protein SLYX homolog; x 91.1 0.79 2.7E-05 32.9 6.9 52 95-146 11-62 (78)
55 3htk_A Structural maintenance 90.9 2.4 8.1E-05 28.1 9.2 51 93-143 7-57 (60)
56 4h22_A Leucine-rich repeat fli 90.9 1.6 5.3E-05 33.3 8.6 53 93-145 32-84 (103)
57 3oja_B Anopheles plasmodium-re 90.8 5.5 0.00019 36.2 14.0 46 98-143 537-582 (597)
58 3m91_A Proteasome-associated A 90.8 1.1 3.9E-05 29.9 7.0 38 108-145 12-49 (51)
59 2fxo_A Myosin heavy chain, car 90.8 2.8 9.4E-05 32.2 10.2 62 84-145 62-123 (129)
60 2v71_A Nuclear distribution pr 90.8 2 7E-05 35.7 10.0 16 93-108 58-73 (189)
61 3he5_A Synzip1; heterodimeric 90.7 1.4 4.8E-05 28.7 7.1 44 91-134 3-46 (49)
62 2dfs_A Myosin-5A; myosin-V, in 90.5 0.85 2.9E-05 46.3 9.0 15 130-144 1027-1041(1080)
63 1gd2_E Transcription factor PA 90.5 0.65 2.2E-05 32.9 5.9 39 106-144 30-68 (70)
64 3m9b_A Proteasome-associated A 90.5 0.32 1.1E-05 42.3 5.1 36 105-140 61-96 (251)
65 3m9b_A Proteasome-associated A 90.4 0.33 1.1E-05 42.2 5.1 46 107-152 56-101 (251)
66 3he5_B Synzip2; heterodimeric 90.4 1.1 3.7E-05 29.6 6.4 41 95-135 7-47 (52)
67 3s9g_A Protein hexim1; cyclin 90.2 1.5 5.1E-05 33.4 7.9 50 92-141 45-94 (104)
68 1hjb_A Ccaat/enhancer binding 89.9 0.65 2.2E-05 34.2 5.7 31 95-125 40-70 (87)
69 3mq7_A Bone marrow stromal ant 89.9 0.97 3.3E-05 35.3 6.8 34 107-140 73-106 (121)
70 1ik9_A DNA repair protein XRCC 89.7 2.2 7.6E-05 35.8 9.6 41 86-126 127-167 (213)
71 2xdj_A Uncharacterized protein 89.6 2.2 7.7E-05 31.0 8.3 31 96-126 25-55 (83)
72 2eqb_B RAB guanine nucleotide 89.6 2 7E-05 32.3 8.3 48 92-139 13-60 (97)
73 3swy_A Cyclic nucleotide-gated 89.5 1.7 6E-05 28.5 6.9 44 95-141 2-45 (46)
74 3swf_A CGMP-gated cation chann 89.5 1.5 5E-05 31.7 7.0 49 94-145 3-51 (74)
75 2eqb_B RAB guanine nucleotide 89.4 4 0.00014 30.7 9.7 15 129-143 79-93 (97)
76 3o0z_A RHO-associated protein 89.3 3.1 0.00011 34.1 9.9 52 88-139 87-138 (168)
77 2yy0_A C-MYC-binding protein; 89.2 0.75 2.6E-05 30.8 5.1 29 114-142 21-49 (53)
78 3htk_A Structural maintenance 89.1 2.8 9.7E-05 27.6 8.0 51 88-138 9-59 (60)
79 3u06_A Protein claret segregat 89.1 1.6 5.4E-05 39.8 8.8 52 94-145 6-57 (412)
80 1deb_A APC protein, adenomatou 88.9 2.8 9.6E-05 28.3 7.7 45 94-138 6-50 (54)
81 2dfs_A Myosin-5A; myosin-V, in 88.6 2.1 7E-05 43.6 10.0 24 119-142 1023-1046(1080)
82 1m1j_C Fibrinogen gamma chain; 87.8 4.1 0.00014 37.3 10.7 59 82-140 75-133 (409)
83 1gu4_A CAAT/enhancer binding p 87.7 1.6 5.5E-05 31.4 6.3 33 93-125 38-70 (78)
84 2wt7_B Transcription factor MA 87.6 1.3 4.5E-05 32.9 5.9 37 101-137 51-87 (90)
85 3ghg_A Fibrinogen alpha chain; 87.3 2.9 9.8E-05 39.9 9.4 43 94-136 113-155 (562)
86 3ol1_A Vimentin; structural ge 87.2 4.8 0.00017 30.6 9.2 20 92-111 21-40 (119)
87 2fxo_A Myosin heavy chain, car 87.0 6.8 0.00023 29.9 10.0 48 97-144 68-115 (129)
88 1dh3_A Transcription factor CR 87.0 2.7 9.3E-05 28.1 6.8 33 110-142 20-52 (55)
89 3v86_A De novo design helix; c 87.0 0.64 2.2E-05 27.0 3.1 26 92-117 1-26 (27)
90 3tnu_B Keratin, type II cytosk 86.8 7.1 0.00024 29.7 10.0 58 86-143 38-106 (129)
91 1kd8_A GABH AIV, GCN4 acid bas 86.8 1.2 4.2E-05 27.9 4.5 26 94-119 4-29 (36)
92 2dgc_A Protein (GCN4); basic d 86.7 2 7E-05 29.5 6.2 32 90-121 29-60 (63)
93 3oja_A Leucine-rich immune mol 86.6 16 0.00055 32.6 13.8 39 106-144 429-467 (487)
94 2w6a_A ARF GTPase-activating p 86.6 2.1 7.3E-05 29.8 6.1 36 97-132 26-61 (63)
95 3a7p_A Autophagy protein 16; c 86.6 5.9 0.0002 32.0 9.7 50 91-140 82-131 (152)
96 1go4_E MAD1 (mitotic arrest de 86.3 1.5 5.2E-05 33.1 5.8 34 113-146 13-46 (100)
97 3mq7_A Bone marrow stromal ant 86.2 6 0.00021 30.8 9.2 34 111-144 70-103 (121)
98 1kd8_B GABH BLL, GCN4 acid bas 86.1 2.1 7.1E-05 26.9 5.3 26 93-118 3-28 (36)
99 3iv1_A Tumor susceptibility ge 86.1 7.9 0.00027 28.0 9.4 46 94-139 28-73 (78)
100 1nkp_B MAX protein, MYC proto- 85.9 1.7 5.8E-05 30.8 5.6 32 114-145 49-80 (83)
101 1jcd_A Major outer membrane li 85.7 4.1 0.00014 27.3 7.1 36 93-128 6-41 (52)
102 3u1c_A Tropomyosin alpha-1 cha 85.5 9.1 0.00031 28.2 10.0 44 88-131 20-63 (101)
103 2v66_B Nuclear distribution pr 85.4 9.2 0.00031 29.3 9.9 19 94-112 6-24 (111)
104 2v71_A Nuclear distribution pr 85.4 4.4 0.00015 33.7 8.7 22 99-120 50-71 (189)
105 3m48_A General control protein 85.2 1.1 3.8E-05 27.7 3.7 10 96-105 5-14 (33)
106 2xdj_A Uncharacterized protein 85.2 6.4 0.00022 28.5 8.5 43 102-144 24-66 (83)
107 4b4t_K 26S protease regulatory 85.1 1.7 5.8E-05 39.7 6.6 44 106-149 50-93 (428)
108 3u59_A Tropomyosin beta chain; 84.7 9.8 0.00033 27.9 9.9 45 88-132 20-64 (101)
109 3na7_A HP0958; flagellar bioge 84.6 5.3 0.00018 33.5 9.1 51 93-143 34-84 (256)
110 3gpv_A Transcriptional regulat 84.4 2.3 7.9E-05 33.0 6.2 43 108-150 98-140 (148)
111 1zbt_A RF-1, peptide chain rel 84.3 4.6 0.00016 36.7 9.0 87 57-146 18-114 (371)
112 3oja_A Leucine-rich immune mol 84.2 6.4 0.00022 35.2 9.9 54 92-145 422-475 (487)
113 2ocy_A RAB guanine nucleotide 84.1 7.2 0.00025 31.4 9.2 23 86-108 8-30 (154)
114 3efg_A Protein SLYX homolog; x 84.0 4.1 0.00014 29.1 6.9 44 102-145 11-54 (78)
115 3s4r_A Vimentin; alpha-helix, 83.6 3.1 0.00011 30.5 6.4 33 107-139 58-90 (93)
116 1lwu_C Fibrinogen gamma chain; 83.2 3.2 0.00011 37.0 7.4 53 90-142 4-56 (323)
117 3iv1_A Tumor susceptibility ge 83.2 11 0.00037 27.3 9.2 51 95-145 22-72 (78)
118 1wt6_A Myotonin-protein kinase 83.2 11 0.00038 27.4 9.4 42 96-137 29-70 (81)
119 2oxj_A Hybrid alpha/beta pepti 83.2 2.4 8.3E-05 26.2 4.6 19 110-128 6-24 (34)
120 3m48_A General control protein 82.9 2.1 7.1E-05 26.4 4.2 21 120-140 8-28 (33)
121 3tnu_A Keratin, type I cytoske 82.9 9.3 0.00032 29.2 9.1 56 88-143 42-108 (131)
122 2d4y_A HAP1, flagellar HOOK-as 82.7 6.2 0.00021 35.7 9.3 77 59-137 44-121 (463)
123 1gk6_A Vimentin; intermediate 82.7 3.7 0.00013 27.7 5.9 49 94-142 3-51 (59)
124 2oxj_A Hybrid alpha/beta pepti 82.6 2.6 8.8E-05 26.1 4.6 26 93-118 3-28 (34)
125 3nmd_A CGMP dependent protein 82.5 3.5 0.00012 29.5 6.0 45 100-144 21-65 (72)
126 3na7_A HP0958; flagellar bioge 82.5 8.2 0.00028 32.4 9.4 11 130-140 101-111 (256)
127 4dzn_A Coiled-coil peptide CC- 82.4 3 0.0001 25.2 4.7 27 114-140 4-30 (33)
128 1ic2_A Tropomyosin alpha chain 82.3 11 0.00037 26.6 10.0 56 88-143 17-72 (81)
129 2w83_C C-JUN-amino-terminal ki 82.2 9.4 0.00032 27.6 8.2 38 108-145 33-70 (77)
130 3trt_A Vimentin; cytoskeleton, 82.0 6.7 0.00023 27.0 7.3 24 114-137 51-74 (77)
131 1jcd_A Major outer membrane li 81.8 9.3 0.00032 25.5 7.9 46 98-143 4-49 (52)
132 3c3g_A Alpha/beta peptide with 81.6 3 0.0001 25.7 4.6 22 110-131 5-26 (33)
133 3c3g_A Alpha/beta peptide with 81.4 3.2 0.00011 25.6 4.6 27 93-119 2-28 (33)
134 1nkp_A C-MYC, MYC proto-oncoge 81.4 3.9 0.00013 29.6 6.0 31 108-138 55-85 (88)
135 4h22_A Leucine-rich repeat fli 80.9 11 0.00039 28.5 8.7 51 95-145 27-77 (103)
136 3ni0_A Bone marrow stromal ant 80.5 16 0.00055 27.5 10.0 60 86-145 27-86 (99)
137 2ve7_C Kinetochore protein NUF 80.4 1.8 6.3E-05 36.9 4.6 59 83-145 123-181 (250)
138 2wq1_A General control protein 80.3 3.5 0.00012 25.4 4.6 23 109-131 4-26 (33)
139 1ik9_A DNA repair protein XRCC 80.3 9.1 0.00031 32.0 8.8 52 91-142 125-176 (213)
140 3tnu_B Keratin, type II cytosk 80.1 2.7 9.4E-05 32.1 5.1 76 62-144 14-93 (129)
141 3c3f_A Alpha/beta peptide with 80.1 3.6 0.00012 25.5 4.6 22 110-131 6-27 (34)
142 2w83_C C-JUN-amino-terminal ki 80.1 14 0.0005 26.6 9.0 47 94-140 12-58 (77)
143 1kd8_B GABH BLL, GCN4 acid bas 80.0 3.5 0.00012 25.8 4.6 25 108-132 4-28 (36)
144 3d5a_X RF1, peptide chain rele 79.6 19 0.00066 32.5 11.2 92 57-148 4-98 (354)
145 3c3f_A Alpha/beta peptide with 79.4 4 0.00014 25.3 4.6 27 93-119 3-29 (34)
146 3k29_A Putative uncharacterize 78.8 22 0.00075 29.1 10.3 45 63-112 55-99 (169)
147 2v4h_A NF-kappa-B essential mo 78.8 15 0.00052 28.1 8.8 16 130-145 87-102 (110)
148 2wq1_A General control protein 78.5 4.5 0.00015 24.9 4.6 26 93-118 2-27 (33)
149 2v4h_A NF-kappa-B essential mo 78.5 20 0.0007 27.4 10.0 23 122-144 86-108 (110)
150 1lwu_C Fibrinogen gamma chain; 78.5 5.4 0.00019 35.5 7.2 47 99-145 6-52 (323)
151 2oto_A M protein; helical coil 78.2 13 0.00044 29.0 8.7 18 100-117 59-76 (155)
152 1uix_A RHO-associated kinase; 78.2 16 0.00054 26.0 8.3 31 98-128 4-34 (71)
153 3q0x_A Centriole protein; cent 78.1 13 0.00044 31.6 9.1 63 80-142 160-222 (228)
154 1uii_A Geminin; human, DNA rep 78.0 9.1 0.00031 28.0 7.0 26 114-139 48-73 (83)
155 3ibp_A Chromosome partition pr 77.8 17 0.0006 32.2 10.1 75 54-140 22-104 (302)
156 2zvf_A Alanyl-tRNA synthetase; 77.7 3.6 0.00012 31.9 5.3 9 90-98 6-14 (171)
157 1deq_A Fibrinogen (alpha chain 77.5 8.1 0.00028 35.4 8.1 45 91-135 113-157 (390)
158 1gk4_A Vimentin; intermediate 77.4 12 0.0004 26.7 7.5 44 94-137 29-72 (84)
159 3ghg_A Fibrinogen alpha chain; 77.3 2.8 9.7E-05 40.0 5.2 12 61-72 62-73 (562)
160 2oqq_A Transcription factor HY 77.2 9 0.00031 24.7 6.0 35 108-142 6-40 (42)
161 3he4_B Synzip5; heterodimeric 77.0 12 0.0004 24.1 6.5 35 93-127 5-39 (46)
162 3w03_C DNA repair protein XRCC 76.7 6 0.00021 32.7 6.5 33 92-124 146-178 (184)
163 2zqm_A Prefoldin beta subunit 76.5 19 0.00065 26.0 10.3 25 121-145 86-110 (117)
164 1uo4_A General control protein 76.3 5.1 0.00017 24.8 4.5 21 94-114 4-24 (34)
165 1nlw_A MAD protein, MAX dimeri 76.3 8.7 0.0003 27.3 6.5 17 116-132 58-74 (80)
166 2xv5_A Lamin-A/C; structural p 76.2 14 0.00047 26.2 7.5 49 94-142 8-56 (74)
167 1i84_S Smooth muscle myosin he 76.2 9.9 0.00034 38.6 9.2 14 49-62 779-792 (1184)
168 2hy6_A General control protein 76.1 3.7 0.00013 25.4 3.8 22 94-115 4-25 (34)
169 1wle_A Seryl-tRNA synthetase; 76.1 16 0.00056 34.0 10.0 53 93-145 79-149 (501)
170 1uo4_A General control protein 76.0 5.1 0.00017 24.8 4.4 25 108-132 4-28 (34)
171 1a93_B MAX protein, coiled coi 76.0 4.4 0.00015 25.1 4.1 12 120-131 15-26 (34)
172 3bas_A Myosin heavy chain, str 75.6 20 0.00068 25.8 9.8 21 125-145 62-82 (89)
173 3tnu_A Keratin, type I cytoske 75.5 14 0.00046 28.2 7.9 31 93-123 40-70 (131)
174 1fmh_A General control protein 75.2 7.1 0.00024 23.5 4.8 23 95-117 5-27 (33)
175 1kd8_A GABH AIV, GCN4 acid bas 75.2 6.4 0.00022 24.7 4.7 25 109-133 5-29 (36)
176 4emc_A Monopolin complex subun 75.1 5.5 0.00019 33.3 5.8 38 91-128 20-57 (190)
177 2zxx_A Geminin; coiled-coil, c 75.0 15 0.0005 26.7 7.4 28 105-132 34-61 (79)
178 3vmx_A Voltage-gated hydrogen 74.8 16 0.00054 24.2 6.9 39 99-144 5-43 (48)
179 2bni_A General control protein 74.8 5.7 0.0002 24.6 4.4 22 110-131 6-27 (34)
180 3u59_A Tropomyosin beta chain; 74.6 22 0.00076 25.9 8.7 6 63-68 9-14 (101)
181 2bni_A General control protein 74.6 4.4 0.00015 25.1 3.9 27 93-119 3-29 (34)
182 1gmj_A ATPase inhibitor; coile 74.5 15 0.00053 26.8 7.5 47 91-139 32-78 (84)
183 3a7o_A Autophagy protein 16; c 74.5 7.4 0.00025 27.9 5.6 53 92-144 19-71 (75)
184 3bas_A Myosin heavy chain, str 74.4 16 0.00055 26.2 7.7 17 91-107 14-30 (89)
185 2j5u_A MREC protein; bacterial 74.3 1.5 5E-05 37.4 2.3 35 105-143 26-60 (255)
186 1gk4_A Vimentin; intermediate 74.1 21 0.00071 25.3 8.8 30 114-143 28-57 (84)
187 1dip_A Delta-sleep-inducing pe 74.0 1.9 6.7E-05 31.2 2.5 22 110-131 20-41 (78)
188 3swk_A Vimentin; cytoskeleton, 73.3 22 0.00074 25.6 8.1 38 108-145 45-82 (86)
189 2zqm_A Prefoldin beta subunit 73.0 13 0.00045 26.9 7.0 47 82-128 61-107 (117)
190 1m1j_B Fibrinogen beta chain; 73.0 61 0.0021 30.2 13.0 18 88-105 118-135 (464)
191 2hy6_A General control protein 72.9 6.8 0.00023 24.2 4.4 24 109-132 5-28 (34)
192 4etp_A Kinesin-like protein KA 72.9 12 0.0004 33.8 8.0 55 91-145 10-64 (403)
193 2j5u_A MREC protein; bacterial 72.5 2 6.7E-05 36.6 2.6 43 88-134 16-58 (255)
194 3w03_C DNA repair protein XRCC 72.4 8.1 0.00028 32.0 6.2 37 85-121 146-182 (184)
195 3a7o_A Autophagy protein 16; c 72.0 24 0.00083 25.2 8.2 44 91-134 32-75 (75)
196 1ic2_A Tropomyosin alpha chain 71.9 23 0.00078 24.9 8.7 20 124-143 46-65 (81)
197 1deb_A APC protein, adenomatou 71.7 16 0.00056 24.5 6.4 36 107-142 5-40 (54)
198 1wle_A Seryl-tRNA synthetase; 71.7 22 0.00074 33.2 9.7 28 109-136 120-147 (501)
199 1x8y_A Lamin A/C; structural p 71.7 25 0.00084 25.1 8.8 47 93-139 30-76 (86)
200 1l8d_A DNA double-strand break 71.3 11 0.00037 27.4 6.2 36 111-146 9-44 (112)
201 3vkg_A Dynein heavy chain, cyt 71.1 17 0.00057 41.4 10.0 39 89-127 2026-2064(3245)
202 3mq9_A Bone marrow stromal ant 71.0 54 0.0019 28.9 11.8 21 123-143 447-467 (471)
203 4dzn_A Coiled-coil peptide CC- 70.4 11 0.00036 22.8 4.7 19 96-114 7-25 (33)
204 1wt6_A Myotonin-protein kinase 70.4 13 0.00046 27.0 6.3 40 106-145 32-71 (81)
205 3gp4_A Transcriptional regulat 70.2 34 0.0012 26.2 9.2 43 103-145 86-128 (142)
206 2dq0_A Seryl-tRNA synthetase; 70.2 25 0.00087 32.2 9.7 53 93-145 40-102 (455)
207 3vmx_A Voltage-gated hydrogen 70.2 18 0.00061 24.0 6.3 29 93-121 6-34 (48)
208 3jsv_C NF-kappa-B essential mo 69.7 32 0.0011 25.6 8.8 17 129-145 64-80 (94)
209 3u06_A Protein claret segregat 69.7 13 0.00043 33.8 7.5 54 92-145 11-64 (412)
210 3q8t_A Beclin-1; autophagy, AT 69.6 30 0.001 25.3 9.9 23 93-115 27-49 (96)
211 3qne_A Seryl-tRNA synthetase, 69.3 27 0.00091 32.7 9.7 52 94-145 43-104 (485)
212 3ghg_C Fibrinogen gamma chain; 69.2 55 0.0019 30.0 11.6 73 63-138 59-131 (411)
213 3qne_A Seryl-tRNA synthetase, 69.2 30 0.001 32.3 10.0 30 109-138 75-104 (485)
214 1wlq_A Geminin; coiled-coil; 2 68.6 26 0.00088 25.6 7.5 27 106-132 39-65 (83)
215 1t6f_A Geminin; coiled-coil, c 68.3 9.8 0.00033 23.9 4.5 25 100-124 9-33 (37)
216 2dq0_A Seryl-tRNA synthetase; 67.8 34 0.0012 31.3 10.0 26 110-135 74-99 (455)
217 2wuj_A Septum site-determining 67.5 6.7 0.00023 26.2 3.9 22 91-112 27-48 (57)
218 1s94_A S-syntaxin; three helix 67.5 21 0.00073 28.0 7.6 12 60-71 6-17 (180)
219 1zme_C Proline utilization tra 67.5 4.1 0.00014 26.9 2.9 24 91-114 44-67 (70)
220 3trt_A Vimentin; cytoskeleton, 67.4 22 0.00076 24.3 6.8 26 120-145 50-75 (77)
221 1uii_A Geminin; human, DNA rep 67.4 26 0.00089 25.6 7.3 33 105-137 46-78 (83)
222 1a93_B MAX protein, coiled coi 67.3 11 0.00038 23.3 4.5 21 107-127 9-29 (34)
223 2zxx_A Geminin; coiled-coil, c 67.3 23 0.00078 25.6 7.0 37 86-122 29-65 (79)
224 1dip_A Delta-sleep-inducing pe 66.8 4.2 0.00014 29.4 2.9 30 111-140 14-43 (78)
225 4dyl_A Tyrosine-protein kinase 66.6 63 0.0021 28.6 11.3 31 115-145 362-392 (406)
226 3mq9_A Bone marrow stromal ant 66.3 34 0.0012 30.3 9.5 17 129-145 446-462 (471)
227 4b4t_K 26S protease regulatory 66.3 9.8 0.00033 34.7 6.0 44 96-139 47-90 (428)
228 2wuj_A Septum site-determining 66.2 5.4 0.00019 26.7 3.3 22 119-140 34-55 (57)
229 3oa7_A Head morphogenesis prot 66.2 24 0.00082 29.7 7.9 46 87-132 26-71 (206)
230 2r2v_A GCN4 leucine zipper; co 66.1 13 0.00044 23.0 4.6 22 110-131 6-27 (34)
231 3rrk_A V-type ATPase 116 kDa s 66.1 52 0.0018 28.1 10.4 19 54-72 61-79 (357)
232 2lw1_A ABC transporter ATP-bin 65.9 33 0.0011 24.3 8.5 18 123-140 60-77 (89)
233 1fxk_C Protein (prefoldin); ar 65.8 32 0.0011 25.6 8.0 41 86-129 86-126 (133)
234 4emc_A Monopolin complex subun 65.8 29 0.001 28.9 8.3 33 93-125 29-61 (190)
235 3a2a_A Voltage-gated hydrogen 65.2 21 0.00071 24.4 6.0 41 98-145 11-51 (58)
236 1fxk_A Prefoldin; archaeal pro 65.1 20 0.00068 25.5 6.5 44 83-126 57-100 (107)
237 1s1c_X RHO-associated, coiled- 65.1 34 0.0012 24.2 7.6 31 95-125 3-33 (71)
238 1wlq_A Geminin; coiled-coil; 2 65.0 30 0.001 25.2 7.3 25 114-138 40-64 (83)
239 2wvr_A Geminin; DNA replicatio 64.9 23 0.00078 29.9 7.5 49 91-139 97-149 (209)
240 2r2v_A GCN4 leucine zipper; co 64.6 14 0.00048 22.8 4.6 26 93-118 3-28 (34)
241 2w6a_A ARF GTPase-activating p 64.6 30 0.001 23.9 6.8 36 106-141 21-56 (63)
242 2ve7_C Kinetochore protein NUF 64.5 3.3 0.00011 35.3 2.4 66 80-145 137-202 (250)
243 1gqe_A Release factor 2, RF2; 64.3 28 0.00097 31.5 8.6 80 58-140 27-115 (365)
244 3mov_A Lamin-B1; LMNB1, B-type 64.0 33 0.0011 25.2 7.5 40 98-137 44-83 (95)
245 2e7s_A RAB guanine nucleotide 64.0 25 0.00087 27.7 7.2 11 129-139 70-80 (135)
246 3vkg_A Dynein heavy chain, cyt 62.9 29 0.00099 39.5 9.8 43 97-139 2027-2069(3245)
247 1hs7_A Syntaxin VAM3; UP-and-D 62.8 13 0.00043 27.7 5.0 37 108-144 36-75 (97)
248 1joc_A EEA1, early endosomal a 62.7 47 0.0016 25.1 8.7 51 80-134 4-54 (125)
249 1fxk_C Protein (prefoldin); ar 62.5 33 0.0011 25.6 7.5 46 96-141 86-131 (133)
250 1zhc_A Hypothetical protein HP 62.3 18 0.00063 25.4 5.6 24 120-143 45-68 (76)
251 1m1j_A Fibrinogen alpha subuni 62.1 39 0.0013 31.8 9.2 55 49-104 52-106 (491)
252 1t3u_A Conserved hypothetical 62.0 42 0.0014 24.2 8.2 62 58-123 32-93 (104)
253 2wvr_A Geminin; DNA replicatio 61.7 37 0.0013 28.6 8.2 33 85-117 109-141 (209)
254 3jsv_C NF-kappa-B essential mo 61.5 16 0.00055 27.3 5.4 23 123-145 65-87 (94)
255 1ses_A Seryl-tRNA synthetase; 61.4 44 0.0015 30.2 9.4 53 93-145 37-97 (421)
256 1ses_A Seryl-tRNA synthetase; 61.2 94 0.0032 28.0 11.9 17 112-128 71-87 (421)
257 4e61_A Protein BIM1; EB1-like 61.2 21 0.00073 27.1 6.1 48 96-144 9-60 (106)
258 1j1d_B Troponin T, TNT; THIN f 61.2 49 0.0017 24.9 8.1 12 57-68 26-37 (106)
259 3cvf_A Homer-3, homer protein 61.1 18 0.00063 26.0 5.5 43 89-131 11-53 (79)
260 3a2a_A Voltage-gated hydrogen 60.9 28 0.00094 23.8 6.0 39 85-123 5-43 (58)
261 1ytz_T Troponin T; muscle, THI 60.8 51 0.0017 24.8 10.4 26 120-145 64-89 (107)
262 2zvf_A Alanyl-tRNA synthetase; 60.3 7 0.00024 30.3 3.4 11 62-72 13-23 (171)
263 2ocy_A RAB guanine nucleotide 60.3 64 0.0022 25.8 9.8 8 137-144 133-140 (154)
264 1m1j_C Fibrinogen gamma chain; 60.1 44 0.0015 30.5 9.2 43 103-145 89-131 (409)
265 3qh9_A Liprin-beta-2; coiled-c 59.9 47 0.0016 24.1 8.0 43 102-144 23-65 (81)
266 2p22_A Suppressor protein STP2 59.6 30 0.001 28.3 7.1 35 106-140 50-84 (174)
267 1vcs_A Vesicle transport throu 59.6 42 0.0014 24.5 7.4 28 80-107 34-61 (102)
268 1l8d_A DNA double-strand break 59.3 47 0.0016 23.9 9.9 30 93-122 66-95 (112)
269 1deq_A Fibrinogen (alpha chain 59.1 27 0.00093 32.0 7.5 13 60-72 64-76 (390)
270 2ve7_A Kinetochore protein HEC 58.9 18 0.00061 31.6 6.1 28 99-126 186-213 (315)
271 3onj_A T-snare VTI1; helix, HA 58.6 44 0.0015 24.2 7.3 25 81-105 31-55 (97)
272 1x79_B RAB GTPase binding effe 58.6 59 0.002 24.8 8.9 14 94-107 9-22 (112)
273 1zxa_A CGMP-dependent protein 58.5 16 0.00053 25.7 4.6 31 110-140 23-53 (67)
274 3lay_A Zinc resistance-associa 58.4 57 0.0019 26.4 8.6 17 112-128 113-129 (175)
275 3oa7_A Head morphogenesis prot 57.6 32 0.0011 28.9 7.1 41 99-139 31-71 (206)
276 1ytz_T Troponin T; muscle, THI 57.4 36 0.0012 25.7 6.8 60 68-131 30-89 (107)
277 4b4t_M 26S protease regulatory 57.0 12 0.00041 34.2 4.9 42 107-148 34-75 (434)
278 1t3j_A Mitofusin 1; coiled coi 57.0 57 0.002 24.3 7.7 46 91-140 47-92 (96)
279 3a5t_A Transcription factor MA 56.6 0.3 1E-05 37.4 -4.9 30 113-142 59-88 (107)
280 2c5k_T Syntaxin TLG1, T-snare 56.6 42 0.0014 24.5 6.9 53 91-143 36-92 (95)
281 3rrk_A V-type ATPase 116 kDa s 56.6 27 0.00091 30.0 6.8 22 51-74 64-85 (357)
282 1lrz_A FEMA, factor essential 56.6 46 0.0016 29.4 8.5 47 91-137 247-299 (426)
283 3lay_A Zinc resistance-associa 56.5 74 0.0025 25.7 9.1 14 122-135 116-129 (175)
284 2zdi_C Prefoldin subunit alpha 56.5 29 0.001 26.7 6.4 46 86-141 96-141 (151)
285 3mud_A DNA repair protein XRCC 56.2 39 0.0013 27.7 7.3 30 98-127 135-164 (175)
286 3cve_A Homer protein homolog 1 56.1 51 0.0017 23.3 9.7 44 88-131 4-47 (72)
287 2l5g_A GPS2 protein, G protein 56.1 27 0.00093 22.0 4.9 21 111-131 14-34 (38)
288 3sja_C Golgi to ER traffic pro 55.9 49 0.0017 23.0 6.7 21 124-144 37-57 (65)
289 2dnx_A Syntaxin-12; snare, HAB 55.5 56 0.0019 24.7 7.8 13 60-72 25-37 (130)
290 1j1d_B Troponin T, TNT; THIN f 55.5 32 0.0011 25.9 6.3 44 102-145 46-89 (106)
291 2qyw_A Vesicle transport throu 55.4 44 0.0015 24.4 6.9 14 129-142 88-101 (102)
292 3ol1_A Vimentin; structural ge 55.0 64 0.0022 24.2 10.0 19 65-86 22-40 (119)
293 2aze_B Transcription factor E2 54.9 31 0.001 25.8 6.0 36 92-127 7-42 (106)
294 2p22_A Suppressor protein STP2 54.7 22 0.00076 29.0 5.6 47 96-142 47-93 (174)
295 3onj_A T-snare VTI1; helix, HA 54.5 58 0.002 23.5 8.7 55 91-145 34-92 (97)
296 1avy_A Fibritin, gpwac M; bact 54.4 56 0.0019 23.3 7.2 42 107-157 10-51 (74)
297 3swk_A Vimentin; cytoskeleton, 53.8 58 0.002 23.3 9.0 30 93-122 2-31 (86)
298 3viq_B Mating-type switching p 53.4 63 0.0021 23.6 7.3 26 95-120 5-30 (85)
299 3l4q_C Phosphatidylinositol 3- 53.4 90 0.0031 25.3 9.7 66 80-145 89-157 (170)
300 3a5t_A Transcription factor MA 53.2 0.19 6.5E-06 38.5 -6.6 40 106-145 59-98 (107)
301 3lss_A Seryl-tRNA synthetase; 53.0 66 0.0022 30.0 9.2 28 118-145 109-137 (484)
302 3q4f_C DNA repair protein XRCC 52.6 20 0.00068 29.8 5.0 17 98-114 161-177 (186)
303 4e61_A Protein BIM1; EB1-like 51.8 41 0.0014 25.5 6.3 30 93-122 13-42 (106)
304 2pnv_A Small conductance calci 51.6 24 0.00083 22.6 4.3 32 89-120 7-38 (43)
305 2lf0_A Uncharacterized protein 51.5 37 0.0013 26.4 6.1 8 151-158 96-103 (123)
306 2l5g_A GPS2 protein, G protein 51.5 34 0.0012 21.5 4.8 16 86-101 10-25 (38)
307 2dq3_A Seryl-tRNA synthetase; 51.2 38 0.0013 30.6 7.2 52 94-145 40-101 (425)
308 2wg5_A General control protein 51.1 18 0.00062 26.9 4.2 23 117-139 12-34 (109)
309 3s84_A Apolipoprotein A-IV; fo 51.0 99 0.0034 26.3 9.4 17 58-74 17-33 (273)
310 4b4t_J 26S protease regulatory 50.9 18 0.00063 32.8 5.0 38 99-136 26-63 (405)
311 1fmh_A General control protein 50.7 28 0.00096 20.9 4.1 13 127-139 16-28 (33)
312 4ani_A Protein GRPE; chaperone 50.7 36 0.0012 28.5 6.4 33 94-126 62-94 (213)
313 2dq3_A Seryl-tRNA synthetase; 50.4 31 0.0011 31.2 6.4 56 90-145 29-94 (425)
314 2wg5_A General control protein 50.2 20 0.00067 26.7 4.3 28 123-150 11-38 (109)
315 1zhc_A Hypothetical protein HP 50.2 9 0.00031 27.0 2.3 21 113-133 45-65 (76)
316 2aze_B Transcription factor E2 49.8 32 0.0011 25.7 5.4 11 134-144 28-38 (106)
317 4fla_A Regulation of nuclear P 49.8 94 0.0032 24.5 8.9 55 91-145 86-147 (152)
318 2xv5_A Lamin-A/C; structural p 49.2 66 0.0022 22.6 8.3 50 96-145 3-52 (74)
319 1vcs_A Vesicle transport throu 48.5 19 0.00066 26.4 4.0 53 92-144 39-92 (102)
320 3mud_A DNA repair protein XRCC 48.4 75 0.0026 26.0 7.8 39 85-123 129-167 (175)
321 3sjb_C Golgi to ER traffic pro 48.1 47 0.0016 24.6 6.0 18 90-107 22-39 (93)
322 3plt_A Sphingolipid long chain 47.3 99 0.0034 26.4 8.7 49 94-142 100-154 (234)
323 2aze_A Transcription factor DP 47.2 99 0.0034 24.8 8.2 41 99-139 6-46 (155)
324 1fxk_A Prefoldin; archaeal pro 47.2 72 0.0025 22.5 9.9 30 114-143 74-103 (107)
325 4dci_A Uncharacterized protein 47.1 1.1E+02 0.0036 24.4 10.4 67 79-145 24-103 (150)
326 1fzc_C Fibrin; blood coagulati 46.8 10 0.00035 33.6 2.6 33 111-143 17-49 (319)
327 2qyw_A Vesicle transport throu 46.5 39 0.0013 24.7 5.4 26 80-105 45-70 (102)
328 3ra3_A P1C; coiled coil domain 46.1 15 0.0005 21.4 2.3 20 103-122 5-24 (28)
329 2p4v_A Transcription elongatio 45.4 1.1E+02 0.0037 23.9 8.3 55 92-146 10-73 (158)
330 3l4q_C Phosphatidylinositol 3- 45.0 1.1E+02 0.0036 24.9 8.2 15 58-72 33-47 (170)
331 1p9i_A Cortexillin I/GCN4 hybr 44.9 21 0.00072 21.2 2.9 19 99-117 7-25 (31)
332 3lss_A Seryl-tRNA synthetase; 44.8 1.5E+02 0.0051 27.5 10.2 15 129-143 114-128 (484)
333 3f1i_H Hepatocyte growth facto 44.6 90 0.0031 23.4 7.1 16 113-128 73-88 (98)
334 3bbp_D GRIP and coiled-coil do 43.9 24 0.00082 25.1 3.6 16 124-139 48-63 (71)
335 3hhm_B NISH2 P85alpha; PI3KCA, 43.8 85 0.0029 28.1 8.2 14 59-72 143-156 (373)
336 4dyl_A Tyrosine-protein kinase 43.5 1.1E+02 0.0039 26.9 9.0 25 121-145 361-385 (406)
337 1use_A VAsp, vasodilator-stimu 43.3 38 0.0013 22.1 4.2 14 122-135 18-31 (45)
338 1m1j_B Fibrinogen beta chain; 43.2 1E+02 0.0036 28.6 8.8 23 122-144 171-193 (464)
339 1pd7_B MAD1; PAH2, SIN3, eukar 43.1 30 0.001 20.2 3.3 20 80-99 2-21 (26)
340 1j1d_C Troponin I, TNI; THIN f 43.0 1.2E+02 0.004 23.7 10.4 70 52-125 30-99 (133)
341 4b4t_J 26S protease regulatory 42.9 36 0.0012 30.9 5.6 42 107-148 27-68 (405)
342 3muj_A Transcription factor CO 42.6 36 0.0012 27.0 4.9 38 59-96 94-133 (138)
343 2no2_A HIP-I, huntingtin-inter 42.6 1E+02 0.0035 22.9 9.9 19 86-104 24-42 (107)
344 1grj_A GREA protein; transcrip 42.4 1.2E+02 0.004 23.6 8.7 55 92-146 10-73 (158)
345 1gmj_A ATPase inhibitor; coile 42.4 97 0.0033 22.5 6.9 24 121-144 53-76 (84)
346 2ve7_A Kinetochore protein HEC 41.9 26 0.00089 30.5 4.4 26 106-131 186-211 (315)
347 2j69_A Bacterial dynamin-like 41.8 60 0.002 30.9 7.2 34 105-138 359-392 (695)
348 1lwu_B Fibrinogen beta chain; 41.7 49 0.0017 29.2 6.2 24 113-136 29-52 (323)
349 2zdi_C Prefoldin subunit alpha 41.5 77 0.0026 24.2 6.7 39 107-145 100-138 (151)
350 1hs7_A Syntaxin VAM3; UP-and-D 41.5 79 0.0027 23.3 6.4 48 96-143 38-88 (97)
351 2ke4_A CDC42-interacting prote 41.3 1E+02 0.0035 22.6 8.7 25 47-72 7-31 (98)
352 3kin_B Kinesin heavy chain; mo 41.0 44 0.0015 25.1 5.0 23 122-144 92-114 (117)
353 1a93_A Coiled coil, LZ, MYC pr 40.8 46 0.0016 20.4 4.1 23 114-136 9-31 (34)
354 3vp9_A General transcriptional 40.7 98 0.0034 22.8 6.7 42 60-105 11-54 (92)
355 1j1e_C Troponin I, TNI; THIN f 40.5 1.5E+02 0.0052 24.3 10.4 24 53-76 31-54 (180)
356 1joc_A EEA1, early endosomal a 40.2 91 0.0031 23.4 6.8 26 99-124 12-37 (125)
357 2efr_A General control protein 40.0 1.4E+02 0.0048 23.7 10.0 54 91-144 56-116 (155)
358 3csx_A Putative uncharacterize 39.4 1.1E+02 0.0036 22.2 6.7 54 92-145 16-76 (81)
359 1j1d_C Troponin I, TNI; THIN f 39.3 1.4E+02 0.0046 23.3 12.1 44 102-145 62-105 (133)
360 1m1j_A Fibrinogen alpha subuni 39.2 95 0.0032 29.2 7.8 47 90-136 110-156 (491)
361 3viq_B Mating-type switching p 39.1 77 0.0026 23.1 5.9 18 93-110 10-27 (85)
362 2er8_A Regulatory protein Leu3 38.9 15 0.00052 24.3 1.9 20 91-110 49-68 (72)
363 2e50_A Protein SET; histone ch 38.3 1.3E+02 0.0045 24.9 8.0 39 85-126 27-65 (225)
364 2i1j_A Moesin; FERM, coiled-co 38.3 7.7 0.00026 36.6 0.4 8 2-9 236-243 (575)
365 2gpe_A Bifunctional protein PU 38.2 58 0.002 20.2 4.6 32 60-97 13-45 (52)
366 2xzr_A Immunoglobulin-binding 37.7 1.3E+02 0.0045 22.7 11.0 80 58-143 22-107 (114)
367 2xzr_A Immunoglobulin-binding 37.5 1.3E+02 0.0045 22.7 8.5 36 108-143 65-100 (114)
368 2js5_A Uncharacterized protein 36.9 1.1E+02 0.0037 21.6 8.4 53 93-145 5-64 (71)
369 3azd_A Short alpha-tropomyosin 36.8 7.2 0.00024 24.2 -0.0 26 92-117 5-30 (37)
370 1g73_A SMAC/diablo, second mit 36.3 1.6E+02 0.0055 23.8 7.9 60 84-143 40-103 (162)
371 1am9_A Srebp-1A, protein (ster 36.1 62 0.0021 22.6 4.9 20 115-134 53-72 (82)
372 1g6u_A Domain swapped dimer; d 36.0 86 0.003 20.1 6.0 11 95-105 4-14 (48)
373 4b4t_M 26S protease regulatory 35.7 26 0.00089 31.9 3.5 24 103-126 44-67 (434)
374 2p2u_A HOST-nuclease inhibitor 34.5 1.7E+02 0.0058 23.1 9.5 54 86-145 18-71 (171)
375 2no2_A HIP-I, huntingtin-inter 34.3 1.4E+02 0.0048 22.1 9.0 24 117-140 73-96 (107)
376 1aa0_A Fibritin, gpwac E; bact 34.3 1.5E+02 0.0052 22.5 7.0 46 103-157 48-93 (113)
377 1t3j_A Mitofusin 1; coiled coi 34.2 65 0.0022 24.0 4.9 35 109-143 51-88 (96)
378 3he5_B Synzip2; heterodimeric 34.1 97 0.0033 20.2 6.8 12 130-141 35-46 (52)
379 1zxa_A CGMP-dependent protein 33.6 69 0.0023 22.3 4.6 26 99-124 26-51 (67)
380 3gpv_A Transcriptional regulat 33.5 1.3E+02 0.0044 22.9 6.8 34 112-145 95-128 (148)
381 2gyq_A YCFI, putative structur 33.4 1.8E+02 0.0062 23.1 8.0 61 89-152 17-79 (173)
382 3hiu_A Uncharacterized protein 33.4 1.8E+02 0.006 23.2 7.7 29 124-152 42-70 (166)
383 4ad8_A DNA repair protein RECN 33.3 1.9E+02 0.0063 26.0 8.8 14 113-126 208-221 (517)
384 1j1e_C Troponin I, TNI; THIN f 32.7 2E+02 0.007 23.5 10.9 34 112-145 72-105 (180)
385 1cii_A Colicin IA; bacteriocin 32.6 2E+02 0.0068 27.4 8.9 30 81-110 374-403 (602)
386 3pe0_A Plectin; cytoskeleton, 32.5 2.1E+02 0.0073 24.0 8.6 22 124-145 162-183 (283)
387 1a93_A Coiled coil, LZ, MYC pr 32.3 79 0.0027 19.4 4.2 30 95-124 4-33 (34)
388 1g1e_B SIN3A; four-helix bundl 32.3 1.3E+02 0.0044 21.5 6.1 17 85-101 9-25 (89)
389 2xnx_M M protein, M1-BC1; cell 32.2 1.6E+02 0.0055 23.4 7.2 13 130-142 91-103 (146)
390 3t97_B Nuclear pore complex pr 32.1 1.3E+02 0.0043 20.9 7.8 39 91-129 10-48 (65)
391 3gp4_A Transcriptional regulat 32.0 1.7E+02 0.0056 22.2 7.8 16 43-58 36-51 (142)
392 3he4_B Synzip5; heterodimeric 31.9 1E+02 0.0034 19.7 6.2 22 90-111 9-30 (46)
393 4ani_A Protein GRPE; chaperone 31.8 1.7E+02 0.0058 24.3 7.7 24 91-114 66-89 (213)
394 3edu_A Beta-I spectrin, spectr 31.6 73 0.0025 24.9 5.2 34 52-92 77-110 (218)
395 3f6n_A Virion-associated prote 31.3 69 0.0024 25.0 4.7 27 94-120 5-31 (129)
396 1xkm_B Distinctin chain B; por 31.2 58 0.002 18.6 3.2 19 83-101 3-21 (26)
397 2xu6_A MDV1 coiled coil; prote 31.0 1.4E+02 0.0048 21.1 6.4 48 89-136 19-66 (72)
398 3q4f_C DNA repair protein XRCC 30.5 87 0.003 25.9 5.5 29 85-113 155-183 (186)
399 3hhm_B NISH2 P85alpha; PI3KCA, 30.3 1.1E+02 0.0039 27.2 6.7 38 96-133 210-254 (373)
400 1x79_B RAB GTPase binding effe 30.2 1.8E+02 0.0061 22.1 7.6 45 94-138 16-64 (112)
401 1hlo_A Protein (transcription 30.2 53 0.0018 22.7 3.7 18 123-140 61-78 (80)
402 2yko_A LINE-1 ORF1P; RNA-bindi 30.1 1.2E+02 0.0042 25.8 6.6 37 88-124 10-46 (233)
403 3q0x_A Centriole protein; cent 30.0 2.5E+02 0.0085 23.6 9.0 41 95-135 168-208 (228)
404 3ogh_B Protein YCIE; iron-bind 29.7 1.6E+02 0.0055 23.6 6.9 28 124-151 45-72 (171)
405 3fx0_A NF-kappa-B essential mo 29.3 63 0.0022 24.1 4.1 14 129-142 79-92 (96)
406 3vlc_E Golgi to ER traffic pro 29.3 52 0.0018 24.4 3.6 17 91-107 30-46 (94)
407 2gs4_A Protein YCIF; stress pr 29.2 1.9E+02 0.0065 22.8 7.3 29 124-152 44-73 (166)
408 1yhn_B RILP, RAB interacting l 29.2 78 0.0027 22.0 4.2 23 115-137 6-28 (65)
409 3mtu_E Head morphogenesis prot 29.1 1.6E+02 0.0054 21.1 8.4 39 88-126 27-65 (77)
410 3fx0_A NF-kappa-B essential mo 28.9 44 0.0015 25.0 3.1 13 124-136 81-93 (96)
411 3ibp_A Chromosome partition pr 28.4 3.1E+02 0.011 24.2 10.1 33 122-154 79-111 (302)
412 3kqg_A Langerin, C-type lectin 28.4 79 0.0027 23.8 4.7 10 96-105 4-13 (182)
413 2pms_C Pneumococcal surface pr 28.4 1.6E+02 0.0054 22.8 6.4 14 130-143 107-120 (125)
414 4gkw_A Spindle assembly abnorm 28.4 2.3E+02 0.0077 22.6 9.8 18 100-117 48-65 (167)
415 3he5_A Synzip1; heterodimeric 28.3 1.2E+02 0.0042 19.5 7.3 41 100-140 5-45 (49)
416 1s94_A S-syntaxin; three helix 28.2 1.7E+02 0.0058 22.7 6.7 14 116-129 78-91 (180)
417 3fs3_A Nucleosome assembly pro 28.1 2.1E+02 0.0071 25.8 8.0 37 86-125 51-87 (359)
418 1few_A Second mitochondria-der 28.0 2.5E+02 0.0087 23.1 8.4 60 84-143 40-103 (184)
419 2l5g_B Putative uncharacterize 27.9 1.2E+02 0.0042 19.4 5.5 15 103-117 14-28 (42)
420 3mtu_A Tropomyosin alpha-1 cha 27.9 1.5E+02 0.0052 20.5 7.8 60 96-155 7-74 (75)
421 1f5n_A Interferon-induced guan 27.9 3.9E+02 0.013 25.2 11.3 13 129-141 570-582 (592)
422 1nfn_A Apolipoprotein E3; lipi 27.8 2.3E+02 0.008 22.6 11.4 82 60-143 70-160 (191)
423 1t6f_A Geminin; coiled-coil, c 27.8 1.1E+02 0.0039 19.0 5.7 20 119-138 14-33 (37)
424 2pnv_A Small conductance calci 27.7 1.1E+02 0.0039 19.4 4.6 22 122-143 19-40 (43)
425 1e91_A Paired amphipathic heli 27.6 66 0.0023 22.8 3.8 19 84-102 5-23 (85)
426 2pms_C Pneumococcal surface pr 27.6 78 0.0027 24.6 4.5 16 117-132 66-81 (125)
427 2d8d_A Aroag, phospho-2-dehydr 27.5 85 0.0029 21.8 4.4 36 93-128 5-40 (90)
428 2de0_X Alpha-(1,6)-fucosyltran 27.4 2.3E+02 0.008 26.3 8.6 60 51-112 48-110 (526)
429 3uux_B Mitochondrial division 27.2 2.7E+02 0.0092 23.8 8.2 15 110-124 175-189 (242)
430 2p22_C Protein SRN2; endosome, 27.1 2.5E+02 0.0086 22.8 8.4 33 110-142 84-116 (192)
431 1gax_A Valrs, valyl-tRNA synth 27.1 1.1E+02 0.0037 30.3 6.5 47 99-145 801-861 (862)
432 1lq7_A Alpha3W; three helix bu 27.1 1.5E+02 0.0051 20.2 6.4 35 109-143 29-65 (67)
433 3m0d_C TNF receptor-associated 27.0 1.4E+02 0.0049 20.0 9.2 33 92-124 7-39 (65)
434 3ni0_A Bone marrow stromal ant 26.4 2E+02 0.007 21.4 7.5 9 124-132 72-80 (99)
435 2aze_A Transcription factor DP 26.2 1.2E+02 0.0042 24.3 5.6 32 90-121 4-35 (155)
436 4i0x_B ESAT-6-like protein MAB 26.1 1.7E+02 0.0058 20.4 8.3 15 129-143 70-84 (103)
437 3tul_A Cell invasion protein S 26.0 2.6E+02 0.0088 22.5 7.4 30 85-114 63-92 (158)
438 2lem_A Apolipoprotein A-I; lip 25.8 2.5E+02 0.0085 22.7 7.6 59 81-139 55-115 (216)
439 2f23_A Anti-cleavage anti-GREA 25.7 2.3E+02 0.0078 21.8 8.1 55 93-147 12-74 (156)
440 4afl_A P29ING4, inhibitor of g 25.3 1.4E+02 0.0048 21.3 5.4 38 84-121 4-41 (104)
441 1z0k_B FYVE-finger-containing 25.3 1.3E+02 0.0045 21.0 4.9 17 107-123 48-64 (69)
442 4b4t_L 26S protease subunit RP 25.2 75 0.0026 28.9 4.7 19 128-146 81-99 (437)
443 2f05_A Paired amphipathic heli 24.9 1.5E+02 0.0052 21.9 5.6 59 85-143 6-77 (105)
444 1tu3_F RAB GTPase binding effe 24.9 1.1E+02 0.0037 22.0 4.5 11 129-139 43-53 (79)
445 1ytz_I Troponin I; muscle, THI 24.9 2.9E+02 0.0098 22.6 9.6 35 111-145 68-102 (182)
446 1lwu_B Fibrinogen beta chain; 24.4 1.3E+02 0.0044 26.5 5.9 24 120-143 29-52 (323)
447 2gkw_A TNF receptor-associated 24.3 1.4E+02 0.0048 23.4 5.7 21 95-115 4-24 (192)
448 1z0k_B FYVE-finger-containing 24.3 1.3E+02 0.0046 21.0 4.8 22 111-132 45-66 (69)
449 2p90_A Hypothetical protein CG 24.2 81 0.0028 27.4 4.5 38 107-144 231-268 (319)
450 1no4_A Late, head morphogenesi 24.2 2.1E+02 0.0072 20.9 7.7 45 98-142 26-70 (97)
451 3p01_A Two-component response 24.2 58 0.002 24.0 3.2 29 83-111 2-30 (184)
452 3ghg_B Fibrinogen beta chain; 24.1 1.7E+02 0.0059 27.2 6.9 12 61-72 93-104 (461)
453 1x4t_A Hypothetical protein LO 24.0 2.2E+02 0.0075 21.0 8.5 63 76-138 13-78 (92)
454 1pyi_A Protein (pyrimidine pat 23.8 1.8E+02 0.0061 19.9 5.9 10 91-100 48-57 (96)
455 3lvg_A Clathrin heavy chain 1; 23.7 23 0.00078 34.3 0.9 20 90-109 549-568 (624)
456 1zbt_A RF-1, peptide chain rel 23.7 1.9E+02 0.0064 26.2 6.9 16 130-145 91-106 (371)
457 2e7s_A RAB guanine nucleotide 23.7 42 0.0014 26.4 2.3 40 105-144 67-114 (135)
458 2vkl_A RV0948C/MT0975; helical 23.7 1.1E+02 0.0038 21.7 4.5 35 93-127 14-48 (90)
459 2a01_A Apolipoprotein A-I; fou 23.6 2.5E+02 0.0086 23.1 7.3 17 58-74 127-143 (243)
460 2q12_A DIP13 alpha, DCC-intera 23.6 2.9E+02 0.01 22.3 9.1 37 109-145 221-257 (265)
461 3err_A Fusion protein of micro 22.7 3.6E+02 0.012 25.1 8.9 59 88-150 29-88 (536)
462 2b3t_B RF-1, peptide chain rel 22.6 30 0.001 31.3 1.4 86 60-145 11-99 (360)
463 1zvu_A Topoisomerase IV subuni 22.6 1.8E+02 0.0062 28.5 7.0 34 109-142 406-446 (716)
464 2a01_A Apolipoprotein A-I; fou 22.5 3.2E+02 0.011 22.4 8.9 17 58-74 105-121 (243)
465 3vlc_E Golgi to ER traffic pro 22.5 48 0.0016 24.7 2.3 15 108-122 33-47 (94)
466 2j69_A Bacterial dynamin-like 22.4 1.4E+02 0.0048 28.3 6.2 28 115-142 362-389 (695)
467 3gwk_C SAG1039, putative uncha 22.4 1.9E+02 0.0064 19.6 5.8 20 124-143 60-79 (98)
468 1ybz_A Chorismate mutase; cons 22.4 1.4E+02 0.0049 21.2 4.9 34 93-126 19-52 (91)
469 3d5a_X RF1, peptide chain rele 22.3 2.6E+02 0.0089 25.1 7.5 11 175-185 176-186 (354)
470 1nfn_A Apolipoprotein E3; lipi 22.2 77 0.0026 25.5 3.8 19 109-127 103-121 (191)
471 2oa5_A Hypothetical protein BQ 21.8 54 0.0018 25.1 2.5 23 93-115 10-32 (110)
472 3mtu_E Head morphogenesis prot 21.7 2.2E+02 0.0077 20.3 7.9 19 101-119 33-51 (77)
473 3rmi_A Chorismate mutase prote 21.7 2E+02 0.0069 21.2 5.7 39 89-127 10-48 (114)
474 2p32_A Heat shock 70 kDa prote 21.7 2.3E+02 0.008 20.5 7.4 12 61-72 23-34 (120)
475 1yzm_A FYVE-finger-containing 21.5 1.8E+02 0.0062 19.2 5.7 18 113-130 29-46 (51)
476 2bzb_A Conserved domain protei 21.2 2E+02 0.0067 19.4 5.5 20 129-148 32-51 (62)
477 1jad_A PLC-beta, phospholipase 21.1 3.9E+02 0.013 22.8 9.8 16 57-72 102-117 (251)
478 3pxg_A Negative regulator of g 20.7 93 0.0032 27.8 4.3 15 124-138 425-439 (468)
479 1gk6_A Vimentin; intermediate 20.7 1.9E+02 0.0065 19.0 6.1 16 93-108 9-24 (59)
480 2gd5_A Charged multivesicular 20.7 1.9E+02 0.0064 22.7 5.7 15 131-145 76-90 (179)
481 3sjb_C Golgi to ER traffic pro 20.6 2.6E+02 0.0089 20.6 8.4 40 105-144 23-74 (93)
482 2lw9_A Unconventionnal myosin- 20.5 76 0.0026 21.1 2.7 16 126-141 6-21 (51)
483 1cxz_B Protein (PKN); protein- 20.3 2.5E+02 0.0086 20.3 7.2 63 86-148 23-85 (86)
484 1dn1_B Syntaxin 1A, syntaxin b 20.3 2.6E+02 0.0088 23.3 6.8 81 61-144 1-91 (267)
485 1gs9_A Apolipoprotein E, APOE4 20.2 3.2E+02 0.011 21.4 11.6 82 59-142 69-159 (165)
486 3anw_A GINS51, putative unchar 20.1 2.8E+02 0.0097 22.1 6.7 43 84-126 25-72 (188)
487 3aei_A Prefoldin beta subunit 20.0 2.4E+02 0.0081 20.6 5.6 37 87-133 60-96 (99)
No 1
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.78 E-value=2.6e-19 Score=131.12 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=62.6
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
++.+|+.+||+||+.||++|.+|+++||.....|.||++||..||+||+.|+.+++.|+.+.+.|..+...|.+++
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999997655579999999999999999999988887766555555444444443
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.77 E-value=5.8e-19 Score=129.79 Aligned_cols=71 Identities=25% Similarity=0.384 Sum_probs=63.8
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L 117 (200)
++.+|+.+||+||++||++|.+|+++||+ ...|.||++||.+||+||++|+.+++.|+.+++.|+..+++.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~-~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVG-TEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999955 447999999999999999999999999999888888766544
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.75 E-value=1.7e-18 Score=129.07 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=67.1
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGR-PARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~-~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
++.+|+.+||+||+.||++|..|+++||... ..|.||++||.+||+||+.|+.+.+.+..+.+.|+.+...|+.++.+|
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999995431 369999999999999999999999988887777776666666666655
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.74 E-value=5.7e-18 Score=124.49 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=67.4
Q ss_pred CCchhHHHHHHHHHHHHhHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 47 PGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 123 (200)
Q Consensus 47 ~~sH~~~ER~RRekiNe~F~~Lr~lLpP~-~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknE 123 (200)
+.+|+..||+||+.||++|..|+++||.. ...|.+|++||.+||+||++|+.+.++|..+++.|+.+...|++++++
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999643 346899999999999999999999999998888888877777776654
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.70 E-value=1.8e-17 Score=120.83 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=61.4
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 45 SRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEE 113 (200)
Q Consensus 45 ~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~e 113 (200)
.++.+|+.+||+||+.||++|.+|+++||.....|.+|++||..||+||+.|+.+++.|+.+++.|+.+
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999976555699999999999999999999999888888777653
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.69 E-value=4.6e-17 Score=127.17 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=51.7
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTESQELKET 106 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~--~~K~dKasIL~dAI~YIk~L~~~v~~L~~~ 106 (200)
++.+|+..||+||++||++|.+|+++||++. ..|.||++||.+||+||+.|+.+++.|+.+
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999997664 248899999999999999999999998864
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=1.4e-16 Score=111.64 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=50.4
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhhcCCCCC----CCCChhhHHHHHHHHHHHHHHHH
Q 028999 45 SRPGSKACREKLRRERLNDRFLDLSCILEPGRP----ARTDKPAILDDAIRVLNQLRTES 100 (200)
Q Consensus 45 ~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~----~K~dKasIL~dAI~YIk~L~~~v 100 (200)
.++.+|+..||+||++||++|.+|+++||++.. .|.||++||.+||+||++|+.++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999977653 37899999999999999998764
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=113.58 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=51.8
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~ 104 (200)
++.+|+..||+||++||++|.+|+++|| +...|.||++||..||+||++|+.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP-~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLP-GNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCC-CCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4679999999999999999999999995 445799999999999999999999876543
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.56 E-value=7.2e-16 Score=108.65 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=48.9
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCC-----CCCCChhhHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGR-----PARTDKPAILDDAIRVLNQLRTES 100 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~-----~~K~dKasIL~dAI~YIk~L~~~v 100 (200)
++.+|+.+||+||++||++|.+|+++||++. ..|.+||+||..||+||++|+.++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999996431 357899999999999999998765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.52 E-value=4.1e-15 Score=108.44 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=48.6
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhhcCCC-CCCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 028999 45 SRPGSKACREKLRRERLNDRFLDLSCILEPG-RPART-DKPAILDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 45 ~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~-~~~K~-dKasIL~dAI~YIk~L~~~v~~L~ 104 (200)
.++..|+.+||+||+.||++|.+|+.+||++ ...|. +|++||..||+||+.|+.++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999632 33465 799999999999999999988764
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=3.8e-15 Score=107.97 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTE 99 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~--~~K~dKasIL~dAI~YIk~L~~~ 99 (200)
++.+|+..||+||++||++|.+|+++||.+. ..|.||++||..||+||+.|+.-
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999999996542 36999999999999999999753
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.35 E-value=2.1e-13 Score=97.60 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=50.2
Q ss_pred CCCCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 028999 44 CSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTES 100 (200)
Q Consensus 44 ~~r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v 100 (200)
..++..|+.+||+|+..||+.|..|+.+||.....|.+|+.||..||+||..|+..+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999996543468999999999999999998754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.24 E-value=5.7e-12 Score=87.97 Aligned_cols=55 Identities=20% Similarity=0.091 Sum_probs=48.2
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGR-PARTDKPAILDDAIRVLNQLRTES 100 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~-~~K~dKasIL~dAI~YIk~L~~~v 100 (200)
++..|+.+||+|+..||+.|..|+.+||... ..|.+|+.||..||+||..|+..+
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999995422 358999999999999999998765
No 14
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.15 E-value=4.6e-10 Score=83.35 Aligned_cols=51 Identities=25% Similarity=0.426 Sum_probs=44.7
Q ss_pred HHHHHHhHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTESQELKETNE 108 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~--~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~ 108 (200)
|..||++|.+|+.+||++. ..|.+|++||..||+||+.|+.+++.+.++..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999997653 36899999999999999999999888776544
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.11 E-value=5e-11 Score=105.12 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=42.5
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTE 99 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~ 99 (200)
++.+|+..||+||++||+.|.+|+++|| +...|.||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p-~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLP-GNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCC-SSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCC-CCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999995 4557999999999999999999764
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=5.6e-10 Score=99.74 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=47.7
Q ss_pred CCCchhHHHHHHHHHHHHhHHHHhhhcCCC--CCCCCChhhHHHHHHHHHHHHHHH
Q 028999 46 RPGSKACREKLRRERLNDRFLDLSCILEPG--RPARTDKPAILDDAIRVLNQLRTE 99 (200)
Q Consensus 46 r~~sH~~~ER~RRekiNe~F~~Lr~lLpP~--~~~K~dKasIL~dAI~YIk~L~~~ 99 (200)
++.+|+..||+||++||+.|.+|+.+||.+ ...|.||++||..||+||+.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 378999999999999999999999999632 236999999999999999999853
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.77 E-value=1.5e-09 Score=77.86 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHhHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHH
Q 028999 50 KACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRT 98 (200)
Q Consensus 50 H~~~ER~RRekiNe~F~~Lr~lLpP~-~~~K~dKasIL~dAI~YIk~L~~ 98 (200)
=+.+||+|+..||+.|..||.+||.. ...|.+|..||.-||+||..|+.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34789999999999999999999532 12589999999999999999974
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.06 E-value=5e-06 Score=63.22 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHHHHHH
Q 028999 52 CREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRTESQE 102 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lLpP~-~~~K~dKasIL~dAI~YIk~L~~~v~~ 102 (200)
..||.|=..||+.|..||..||.. ...|.+|..||.-||+||..|+..++.
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 345778889999999999999532 235899999999999999999886653
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.64 E-value=0.00053 Score=50.52 Aligned_cols=60 Identities=28% Similarity=0.493 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..||+-|.-|+-++++|+.+|..|.++..+++.....|+.|+..|+.|....+..|.++
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999988888888888888888888777766653
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.77 E-value=0.011 Score=43.48 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI-------LKADKEKLEQQLKVM 145 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~-------Lk~e~e~L~~qlk~~ 145 (200)
.+.+.+|..+|+.+-.+..-|+.++++|+.+.+.|.+++.. |..++++|+++...+
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 36788899999998888888888888888888887777776 666777777776654
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.64 E-value=0.021 Score=45.23 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=36.8
Q ss_pred HHHHHhHHHHhhh--cCCCCCCCCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCI--LEPGRPARTDKPAILDD--AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 59 ekiNe~F~~Lr~l--LpP~~~~K~dKasIL~d--AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
..+|+++.+++.. - |.. -.++.+||.- .++=+-+++.+.+.|+.+.+.+..++..|+.++.+++.
T Consensus 35 ~~vd~km~ei~~~~~~-~~l--~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 35 SYINNKITEFNKEESY-RRM--SAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHTTCHHH-HTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999966 6 422 4788888872 33333335555555555555444444444444433333
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=96.55 E-value=0.017 Score=39.89 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 54 EKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 54 ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
||++|....++..+.+.-- .-.+|+.+|+.+++.|+.+|..|..++..|+.++..|+.
T Consensus 1 Ekr~rrrerNR~AA~rcR~---------------rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRN---------------RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666543 234788889999988888888888877777777666654
No 23
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=96.36 E-value=0.0065 Score=43.38 Aligned_cols=42 Identities=31% Similarity=0.298 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
-.||++|+.++..|+..+..|..+...|+.++..|+.|+..|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478888888888888877777666666666666666555443
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=95.71 E-value=0.019 Score=38.84 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=10.9
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRT-------ESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 88 dAI~YIk~L~~-------~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
+|++||++--. .++.|+.+++.|+.++.+|+.+..||
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899987643 34444444444444444444443333
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.52 E-value=0.074 Score=42.09 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|.++..++..|+.+...++.++++++.++.+|++++..|+.++-+|+..++.
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666667777777777777777777777777777776653
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.49 E-value=0.045 Score=37.28 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
.|+.+|+.++..|+.+|..|..++..|+.|+..|+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655555555554443
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.40 E-value=0.081 Score=40.19 Aligned_cols=56 Identities=32% Similarity=0.472 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKN----------------------------ELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn----------------------------ELr~Ek~~Lk~e~e~L~~ql 142 (200)
+-+..|+.+++.|+.+++.|.+++..|..++. +...+...|++|+++|...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777666554 35566678888888888888
Q ss_pred HHhc
Q 028999 143 KVMA 146 (200)
Q Consensus 143 k~~~ 146 (200)
+.|-
T Consensus 92 ~~lE 95 (100)
T 1go4_E 92 RAME 95 (100)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 7663
No 28
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.26 E-value=0.17 Score=38.58 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=39.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 79 RTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 79 K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++|..++.+ ||. |...++.|++++..|+......-..+.+|..|...|+.|..+|.++-+.+
T Consensus 29 ~mSKqELIqE---Yl~-LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 29 NMSKQELIKE---YLE-LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp TSCHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3778877764 554 88888888888888877555555555555555555555555555444433
No 29
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=95.24 E-value=0.19 Score=36.91 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
-|.-|++|+-.|.+|+.+.-+-+..++..+.|+..|+.....=.+++++|+.||.+
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 45789999999999999888888888888888888988888888999999988753
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.18 Score=40.91 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=39.0
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 57 RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
=|+.+-.+|.+|-.-+ .+.+. ..=+|=+..-+.-|..|+.+...|+..+..|.+++++-......+++|...|+.+..
T Consensus 36 ~Rd~~E~~~~~l~~e~-~~~~~-~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 36 DRNDKEAHLNELFQDN-SGAIG-GNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHhh-ccCCC-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666665554 21111 112223334455677777777777776666666666666666666777776666666
Q ss_pred HHHHHHHH
Q 028999 137 KLEQQLKV 144 (200)
Q Consensus 137 ~L~~qlk~ 144 (200)
-++..++.
T Consensus 114 ~lE~kl~k 121 (152)
T 3a7p_A 114 VLQQKLSD 121 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 31
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=94.68 E-value=0.037 Score=37.88 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
+||.+|+.++..|+.+|..|..++..|+.|+..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666555554444444433
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.51 E-value=0.14 Score=36.86 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
-|.+|+..+++-.++....++.|++|..++.|..++...|+.++++++.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3888888888888888888888999999999999999999988888743
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.25 E-value=0.13 Score=35.51 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQE 112 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ 112 (200)
..|..+++.|+.+|..|..
T Consensus 26 ~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.15 E-value=0.44 Score=35.20 Aligned_cols=54 Identities=19% Similarity=0.375 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKL------------QEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L------------~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+-|+.|+.+...|+.+...+ +.+|.+|+.++.++..++..|..|++.|+..+..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555443333 4557777777777878888888888877766654
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=94.10 E-value=0.46 Score=34.33 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+|...-+......+.+.+.-.....++.....+|..||..|+.+++.|+.++..+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666555555555556666566666677777777777777777777777777665
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.87 E-value=0.2 Score=32.60 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
.|+.+|+.++..|+..+..|++.+..|..|..=||+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 489999999999988888888777666666555543
No 37
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.47 E-value=0.67 Score=34.15 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+|...-+.....-+...+.-.....++..+..+|..||..|+.+++.|+.++..
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355544444444444444444445555555666666666666666666555544
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.45 E-value=0.44 Score=43.51 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++.++.+++....+.++....+++|.+.+.++++.+
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555666666666666554
No 39
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.44 E-value=0.28 Score=33.26 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
...|+.++..|..+..+|+.+...|+.|+..|.++|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666666666666666666554
No 40
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.40 E-value=0.45 Score=34.12 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.+..+++.++..|..|+..+..|...+++-+.+...++.|+.++-++|.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888888888888888888888888888877776654
No 41
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=92.88 E-value=0.071 Score=36.01 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
.||.+|+.+|..|+.+|..|..++..|+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666655555554444
No 42
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.68 E-value=1.6 Score=33.81 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=34.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 79 RTDKPAILDDAIRVLNQLRTESQELKET----NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 79 K~dKasIL~dAI~YIk~L~~~v~~L~~~----~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+.+|-.++..=-.-|..|+.+++.+..+ ..+|+..+..|..++.+-+.+++....|.+.|..++..+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333333444444444322 234555566666666666666666666777777766654
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=92.54 E-value=0.16 Score=35.16 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 111 QEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+..+.+|..+..+|..++..|+.+++.|.+++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555665555544
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.47 E-value=0.98 Score=30.97 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
|.+|=..=+...+.|+.+.+.|..+..+|+.+++.|+.|+..|+
T Consensus 14 A~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 14 ATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555544444444444444444443
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.13 E-value=0.6 Score=31.90 Aligned_cols=36 Identities=42% Similarity=0.469 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
...|+.++..|..+..+|+.+...|+.++..|...|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555544
No 46
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.83 E-value=0.84 Score=35.37 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
--.|..++=.||.+|+.++..|+.+++.-+........+.+.|+.|+..|
T Consensus 31 le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 31 LENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999988776655555555555555555444
No 47
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.53 Score=42.69 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|..|+.++..|+++...|++++++++.++.++.++.........+|..+++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788888888888889999999999999888888777777777888888775
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.69 E-value=1.2 Score=34.25 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
|..|+.++..|...++.|+..+++|.+....|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 33333333333333333333333333333333
No 49
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.67 E-value=1.1 Score=33.26 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
..|+.++..|+.+-..|..++..|..+...+..+...++.+.++|
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444
No 50
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=91.64 E-value=1.5 Score=32.59 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+...|+.+...|..+++.|+.|+..+..|++.+.+.+..+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777788888888888888888887777655
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.61 E-value=0.23 Score=33.82 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.|+.++..|..+..+|..+...|+.|+..|.+
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 52
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=91.52 E-value=0.79 Score=33.32 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+..+++.++..|..|+..++.|...+++-+.+...++.|+.++-++|.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777888877777777777777777777766554
No 53
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=91.41 E-value=1 Score=30.21 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
-+.+|+.++..|...|..|.+ .+.+.|++...|+.++++|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~-------~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLME-------TLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 344566666666666666554 4555555555556666655
No 54
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.10 E-value=0.79 Score=32.93 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
+|..++.+|+....-+..-|.+|...+.+.+.+...|+.++..|..+++.+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666666666666666666677777777766666653
No 55
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.93 E-value=2.4 Score=28.05 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+..|+..+..++.....+..+...++..++++..+......+|..++.|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555556666655554
No 56
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=90.86 E-value=1.6 Score=33.32 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|.-|+..++++++...+++.+.++...+.+.++.....|+.++..|+.||+..
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777778888888888888888888888888888888888763
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.84 E-value=5.5 Score=36.20 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++.++++.+...++..+++.+....|+++|++.+++|+..|++.+.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455667777777777777777777777777777777666554
No 58
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=90.82 E-value=1.1 Score=29.91 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..|+.++..|......|-+-....+.++.+|..+|..+
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566666666666666777777777776654
No 59
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.79 E-value=2.8 Score=32.18 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..+.+|-+....|...-..|+.....+.+.+.+.....++|..++-.|..++..|+.++...
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666777776666554
No 60
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.77 E-value=2 Score=35.70 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNE 108 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~ 108 (200)
+++|+..+..|..+.+
T Consensus 58 ~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 58 NRDLQADNQRLKYEVE 73 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 61
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.67 E-value=1.4 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
..+.+|+.++..|+.+|++|....-.-+.-+..|..|.+.|+..
T Consensus 3 nlvaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999988765433333333344444444433
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.53 E-value=0.85 Score=46.33 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 130 ILKADKEKLEQQLKV 144 (200)
Q Consensus 130 ~Lk~e~e~L~~qlk~ 144 (200)
.|+.|+.+|++|+..
T Consensus 1027 ~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=90.51 E-value=0.65 Score=32.92 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
....|+.++.+|......|..|+..|+.+++.|..+++.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666667777777777777766654
No 64
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.48 E-value=0.32 Score=42.28 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.++..|..+.+.|+.++++++.|...||.|+++|.+
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333334444555555555555555555443
No 65
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.38 E-value=0.33 Score=42.18 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGY 152 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~ 152 (200)
...|+.++..|......|.++...++.|+++|+.|++.+..||..|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~i 101 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGY 101 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4467777777766666678888888888888888888887776643
No 66
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.36 E-value=1.1 Score=29.61 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
.|+..+..|++.|-+|+..-..|..-+..||+|.++|..|.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888877766667666777777766665544
No 67
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=90.21 E-value=1.5 Score=33.36 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
-+.+|+.+...|+......-..+++|..++..|+.||+.|..|.+-..++
T Consensus 45 ~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 45 SLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34456666666666666667888888888888999998888888877665
No 68
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.92 E-value=0.65 Score=34.20 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
+++.++..|+.+|..|+.+|..|+.|+..|+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444444443
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.90 E-value=0.97 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.+.|+.||..|++++.+...|...|+.+++.|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 4444445555555554444444445444444443
No 70
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=89.74 E-value=2.2 Score=35.77 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
+.=+++-+..|+.++..|..+++.|+.++..|..++.++-.
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555565655555555555555555444433
No 71
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=89.64 E-value=2.2 Score=30.96 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
|..+++.|+.+...|+-.++++.-+++++..
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333443433333333333333333333333
No 72
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.63 E-value=2 Score=32.30 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
-|.+|+.++...+.+...|..++.+-+...-+...++..+..|+|.|-
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333333333333333333333333333344444444443
No 73
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=89.51 E-value=1.7 Score=28.52 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
+|++.|+.|+...+.|+.....|-+|.+ .-..+||+-+.+|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 5788899999999999988888866554 4456888888888875
No 74
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=89.48 E-value=1.5 Score=31.65 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++|++.|+.|+...+.|+.....|-+|.+ .-..+||+-+.+|+.+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc
Confidence 35888999999999999998888866555 45678999999999999874
No 75
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.40 E-value=4 Score=30.70 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQQLK 143 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk 143 (200)
..++...+.|+.||+
T Consensus 79 ~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 79 YAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444445555544
No 76
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.35 E-value=3.1 Score=34.07 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.+-+.|.+|+.++..|..+.+.+......+..++..|.+....|..++..++
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445666666666666666666666666666666666666666666655555
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.20 E-value=0.75 Score=30.83 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+..|+.|+.+|+.+...|+.+++.|..+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 78
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.13 E-value=2.8 Score=27.64 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
..-+++..+...+..++.....+...+..+...++..+++...++.+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344667777778888888888888899999999999999999998888653
No 79
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=89.11 E-value=1.6 Score=39.81 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..|+.++.+|++..++|++++++++.++.++.++......+..+|..++..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688899999999999999999999999998888877777778888888876
No 80
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=88.92 E-value=2.8 Score=28.28 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.+|-.+|+.|+.+|..|+.|.+.=...++.|..|...+|.=...|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 467778889999998888888777777777777777666544433
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.61 E-value=2.1 Score=43.57 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 119 AEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 119 ~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
..++.|..|++.|+++++.|+.++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456677777777777776443
No 82
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=87.77 E-value=4.1 Score=37.33 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+......++++++.+..++.+|+.......++++.|+..++.++.....|+..+..|+.
T Consensus 75 ~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 75 LPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44445666899999999999988877777777777777776665555555555555543
No 83
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.73 E-value=1.6 Score=31.44 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
..+++.++..|+.+|..|+.+|..|+.|+..|+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777766666666655555543
No 84
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=87.58 E-value=1.3 Score=32.89 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 101 QELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 101 ~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
..|+.++..|..++..|+.|+.++..|...+|...+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555544444443
No 85
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.25 E-value=2.9 Score=39.95 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
.+|+.+++-|+++...-...|+.|+.-+.+++.+.++|..+|+
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888877765557788888888888888888875553
No 86
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.16 E-value=4.8 Score=30.57 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~ 111 (200)
||.+|+.++..+..++..|.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~ 40 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 87
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.04 E-value=6.8 Score=29.95 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 97 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
......|......|...+.++...+.+..+.+..|..++.+|++++..
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555566666666666666666666666666666665544
No 88
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=87.00 E-value=2.7 Score=28.08 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
-+..+.+|..+..+|..|+..|+.+++.|++++
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577777777888888888888888777643
No 89
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=86.98 E-value=0.64 Score=27.04 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L 117 (200)
|+-+|+.++-+|+-+...|..++++|
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 44556666665555555555554443
No 90
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.81 E-value=7.1 Score=29.71 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA-----------EKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~-----------eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+.+.-.-|..|+.+++.++..+..|+..+.++.. .+..|..+...++.+.++.-++++
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666666655544433 233444444555555554444333
No 91
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.80 E-value=1.2 Score=27.91 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
+||+.+|++|-.++..|+.++..|+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555555544444443
No 92
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.73 E-value=2 Score=29.45 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
.+|+.+|+.++..|+.+|..|..++..|+.++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888877777777666665544
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.62 E-value=16 Score=32.55 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+.+....+.+....+.+.|++|+.+++.+++.+..++..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 333344444555555555666666666665555554443
No 94
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=86.58 E-value=2.1 Score=29.77 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 97 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
+.++++|-+-|..|.+|++-|..+++.|+.|+..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 445677777777777777777777888877777765
No 95
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.55 E-value=5.9 Score=31.97 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.-|++|..++..-...++.|+.|+..|..+.|.+.+....|+.|...|-+
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444667788899999999999998888999888877643
No 96
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.31 E-value=1.5 Score=33.15 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 113 EIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
++..|+.++.+|+.|+..|+.+++.|+-+|-...
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666667777776665543
No 97
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.21 E-value=6 Score=30.81 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 111 QEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+..+++|.-|+..|.++......++|+|..+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 3345555555555555555555555655554443
No 98
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.12 E-value=2.1 Score=26.88 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
++||+..|++|-.++..|+.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555555444444444444443
No 99
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=86.07 E-value=7.9 Score=28.00 Aligned_cols=46 Identities=30% Similarity=0.480 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
..|+..-++|..-..+|+.-+..|..|.+++......|+...+.|+
T Consensus 28 ~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 28 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666655555444
No 100
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.91 E-value=1.7 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|+.|..+..+|..|+..|+.+++.|+++|..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666666666666666654
No 101
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=85.70 E-value=4.1 Score=27.32 Aligned_cols=36 Identities=6% Similarity=0.276 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
|.+|-.+|+.|......|..++..|+.+...-.+|-
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544444433333
No 102
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.48 E-value=9.1 Score=28.22 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
.|++-..+++..+..++..+.++..++..|...+..+.++...+
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666555555555555555555555555444444333
No 103
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.42 E-value=9.2 Score=29.27 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQE 112 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ 112 (200)
++|+..+..|..+++.++.
T Consensus 6 rdL~~~~~~L~~E~e~~k~ 24 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKE 24 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 104
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.39 E-value=4.4 Score=33.70 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAE 120 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~e 120 (200)
++..++..+..|+..+..|+.+
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344333333333
No 105
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.18 E-value=1.1 Score=27.66 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 028999 96 LRTESQELKE 105 (200)
Q Consensus 96 L~~~v~~L~~ 105 (200)
|+.+|++|-.
T Consensus 5 LE~kVEeLl~ 14 (33)
T 3m48_A 5 LEAKVEELLS 14 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 106
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.18 E-value=6.4 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+|....+.|+.++..|+-.++++..+...++..-..+.+.|..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544444444543
No 107
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.06 E-value=1.7 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPT 149 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p 149 (200)
....|+.+++.|..+.+.+++|...++.++.+++.+++.+..+|
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~ 93 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVP 93 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33445555566666666777777777778888888887765543
No 108
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.70 E-value=9.8 Score=27.88 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.|++-..+++.++..++..+.++..++..|+..+..+.++...+.
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666555555555444333
No 109
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.62 E-value=5.3 Score=33.50 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
|..|+.++..++.....++.++.++..++..+..+...++..+++.+.++.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444443
No 110
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=84.37 E-value=2.3 Score=33.05 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTG 150 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~ 150 (200)
+.|.+...+|..++.+|+.-...|...++.+++.++.......
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~ 140 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANATTK 140 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3455555556666666666566666666666665554433333
No 111
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=84.31 E-value=4.6 Score=36.75 Aligned_cols=87 Identities=20% Similarity=0.340 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHhhhc-CCCCCCC-------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCIL-EPGRPAR-------TDKPAILDDAIRVLNQLRTESQELKETNEKLQE-E-IKSLKAEKNELRE 126 (200)
Q Consensus 57 RRekiNe~F~~Lr~lL-pP~~~~K-------~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~-e-i~~L~~eknELr~ 126 (200)
+-+.+.++|.+|...+ .|+.... +...+-|...++.+..|+...+.++...+-+.+ + -.+| +.++.+
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~---~~~a~~ 94 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPEL---EEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH---HHHHHH
Confidence 4456888999998876 2321111 233456666677777776666666654444332 1 1111 345677
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 028999 127 EKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 127 Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
|...|+.+++.|+.+|+.+-
T Consensus 95 e~~~l~~~l~~le~~l~~lL 114 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLRFLL 114 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999998763
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.18 E-value=6.4 Score=35.17 Aligned_cols=54 Identities=9% Similarity=0.050 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..++++.+.+.++...+..+++++.|+.+++.++.+...+..+++...+.++.+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 444555555556667777788888888888888888888888888877777764
No 113
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.12 E-value=7.2 Score=31.43 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNE 108 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~ 108 (200)
|-.||++...|..++..+..+++
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 44566666666665555554444
No 114
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.97 E-value=4.1 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.|+.....|+..+.....-+++|-+.......+|++|+.+++.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555554455555555555555444
No 115
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.63 E-value=3.1 Score=30.53 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
...|+.++..+..++..|.-|...|..+++++.
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 116
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=83.24 E-value=3.2 Score=36.96 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.=++.|..++.+|+.......+++..|+..+..++.....|+.++..|+..+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666666666666666666666665544
No 117
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=83.21 E-value=11 Score=27.25 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+-+.+++.|+...+.|..-...|..=+++|..|...|...++.|+...+.+
T Consensus 22 q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 22 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555556667777777777777777666555
No 118
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.20 E-value=11 Score=27.43 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
+.+++.+.+..|-.++.+.++......+|..|...|+.+.+.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 119
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=83.18 E-value=2.4 Score=26.25 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek 128 (200)
|+..+.+|-.++.+|.+|.
T Consensus 6 LE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 3333333333344433333
No 120
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=82.92 E-value=2.1 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 120 EKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~ 140 (200)
...||..+|..|+.|++||..
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 344444455555555555544
No 121
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.89 E-value=9.3 Score=29.17 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKA-----------EKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~-----------eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+.-.-|..|+.+++.++..+..|+..+.++.. .+.+|..+...++.++++.-++++
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666556555555444433 233444444455555444443333
No 122
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=82.74 E-value=6.2 Score=35.75 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=57.3
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 59 ekiNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
..|++-|..|.++- -|. .-.-+..+|+.|-.....++.--..|+.....+..+|+..-.++|.|-.+.+.|..+|-+
T Consensus 44 ~~l~~ff~alq~la~~P~--~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~ 121 (463)
T 2d4y_A 44 GSLQSFFTSLQTLVSNAE--DPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISR 121 (463)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887 232 235678899999888888888888888777777777777777777777776666666644
No 123
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=82.72 E-value=3.7 Score=27.70 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
++++..+..|+.+...++.++.....|..+|.+=|..|..||..-..-|
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677778888888888888888888899999999999988886654433
No 124
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.61 E-value=2.6 Score=26.13 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
+.||+..|++|-.++..|+.++..|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45666666666666666666665554
No 125
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.51 E-value=3.5 Score=29.46 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 100 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 100 v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
+.+|+.......++++.....+.+|..+......++..|+.+|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555555543
No 126
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.48 E-value=8.2 Score=32.36 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 028999 130 ILKADKEKLEQ 140 (200)
Q Consensus 130 ~Lk~e~e~L~~ 140 (200)
.++.++..|+.
T Consensus 101 ~~~~~i~~lE~ 111 (256)
T 3na7_A 101 IAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 127
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=82.41 E-value=3 Score=25.18 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+..|++|+.-|..|...||-|+.-|.|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444455555555555554444
No 128
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.32 E-value=11 Score=26.59 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.|.+-+.++...+...+.....+..++..|...+..|.++...+.......+..|.
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666666666666666666555555555554443
No 129
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=82.22 E-value=9.4 Score=27.60 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..|-..+++|+-|+.-|+.|...++.-+.+++..++.+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666665555443
No 130
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=81.99 E-value=6.7 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
+...+.|+.||+...+.|..|++.
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555555555554443
No 131
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=81.81 E-value=9.3 Score=25.53 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.++++|.....+|-.++..|..+.+.|+.+....|.|-.|-.+.|.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577888888888888888888888888888888877777666554
No 132
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=81.61 E-value=3 Score=25.68 Aligned_cols=22 Identities=0% Similarity=0.149 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~L 131 (200)
|+..+++|-.++.+|.+|..+|
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333434444444433333
No 133
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=81.43 E-value=3.2 Score=25.59 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
++||+..|++|-.++..|+.++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356666677666666666666665543
No 134
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=81.36 E-value=3.9 Score=29.62 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
..|+.+...+..++++|+.++..|+.+++.|
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555444
No 135
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.94 E-value=11 Score=28.51 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.|.-+|+-|+...+.+++...+++.+..|...+...+|-.+..|+.++..+
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777777777777777777777777778888888888777664
No 136
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=80.53 E-value=16 Score=27.46 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|+.|-+.+.+-+.++.--......|..-.+.-+..-.+.+.+...|+.||..|.++|+..
T Consensus 27 LT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 27 LTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333334444444333333333333445566777777777777664
No 137
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=80.44 E-value=1.8 Score=36.91 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 83 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.-||+--|.|++.-+...... +.+..+.+++..+.+.|+.|+..+++++++|++++...
T Consensus 123 ~~iLSalINF~~FRE~~~~~~----~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 123 SRFLSGIINFIHFREACRETY----MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHTTHHHHHHHHHHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 448888889988655554433 34455566667777777777777777777777766654
No 138
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.28 E-value=3.5 Score=25.35 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~L 131 (200)
+|+..+++|..++.+|.+|..+|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444333
No 139
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=80.26 E-value=9.1 Score=31.99 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+++..+-..+..++.++..|.++...|..+.++|..+...+-.+++.++.+|
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677777777777777777777777666666666665555444
No 140
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.12 E-value=2.7 Score=32.08 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=41.2
Q ss_pred HHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028999 62 NDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE----KLILKADKEK 137 (200)
Q Consensus 62 Ne~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E----k~~Lk~e~e~ 137 (200)
+.+|.+|...+ . +. ..-|..+-.-|.+|+..++.|+.+.+.|+.....|...+.++... ...++..+..
T Consensus 14 ~~K~eel~~~~-~----~~--~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~ 86 (129)
T 3tnu_B 14 QTKYEELQQTA-G----RH--GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAE 86 (129)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-H----hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655 1 11 123455667788899999999999988888888888888776543 3345556666
Q ss_pred HHHHHHH
Q 028999 138 LEQQLKV 144 (200)
Q Consensus 138 L~~qlk~ 144 (200)
|+.+|..
T Consensus 87 lE~eL~~ 93 (129)
T 3tnu_B 87 LEEALQK 93 (129)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 6665544
No 141
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=80.07 E-value=3.6 Score=25.47 Aligned_cols=22 Identities=5% Similarity=0.199 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~L 131 (200)
|+..+++|-.++.+|.+|..+|
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 3333344444444444433333
No 142
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=80.05 E-value=14 Score=26.61 Aligned_cols=47 Identities=32% Similarity=0.345 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
..|-.+..+|......|.---++|-+...||--|+..|+.|++.+++
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444444555666666666666666666666654
No 143
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.99 E-value=3.5 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.+|+..+++|..++.+|.+|..+|+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455556566556655555555544
No 144
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=79.56 E-value=19 Score=32.45 Aligned_cols=92 Identities=23% Similarity=0.342 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHH
Q 028999 57 RRERLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSL-KAE-KNELREEKLILKA 133 (200)
Q Consensus 57 RRekiNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L-~~e-knELr~Ek~~Lk~ 133 (200)
|=+.+.++|.+|...+ .|+.....+++.-|.+-...|+.+-....+++...+.+.+-..-+ -.+ +.++.+|...|+.
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3456788999998877 232222234444333333333333333333333222222211111 112 2445778888999
Q ss_pred HHHHHHHHHHHhcCC
Q 028999 134 DKEKLEQQLKVMAMP 148 (200)
Q Consensus 134 e~e~L~~qlk~~~~~ 148 (200)
+++.|+.+|+.+-.|
T Consensus 84 ~~~~le~~l~~lLlp 98 (354)
T 3d5a_X 84 RKEALEKELERHLLP 98 (354)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999998887433
No 145
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.36 E-value=4 Score=25.25 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
+.||+..|++|-.++..|+.++..|+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456666677666666666666665543
No 146
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=78.83 E-value=22 Score=29.13 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=29.6
Q ss_pred HhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 63 DRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQE 112 (200)
Q Consensus 63 e~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ 112 (200)
+.+..|+..++-|. -+||.-+.. .||+=|+.+...++.......+
T Consensus 55 ~k~~qlre~~d~gt--t~~~i~~m~---~yI~llrErea~lEqkVaeq~e 99 (169)
T 3k29_A 55 QKIRQLREQLDDGT--TSDAILKMK---AYIKVVAIQLSEEEEKVNKQKE 99 (169)
T ss_dssp HHHHHHHHHHHHCC--CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999995553 456655544 5777788877777765544333
No 147
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.80 E-value=15 Score=28.13 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 028999 130 ILKADKEKLEQQLKVM 145 (200)
Q Consensus 130 ~Lk~e~e~L~~qlk~~ 145 (200)
++..+|+.|+.||..+
T Consensus 87 kl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3445555555555443
No 148
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=78.53 E-value=4.5 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
++||+..|++|-.++..|+.++..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35666666666666666666655554
No 149
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.50 E-value=20 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..+..|+..|+.+++.|+.|+..
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777776643
No 150
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=78.48 E-value=5.4 Score=35.48 Aligned_cols=47 Identities=26% Similarity=0.138 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+.+|.++..+|+..+.....++..|+.....++..+..|++++..+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555666666666666666666666555443
No 151
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=78.25 E-value=13 Score=29.01 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 100 SQELKETNEKLQEEIKSL 117 (200)
Q Consensus 100 v~~L~~~~~~L~~ei~~L 117 (200)
++.|+..+..|+...+++
T Consensus 59 ~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 59 KQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 152
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=78.22 E-value=16 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
..++.|..+++.|...++.+..++..+++|-
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee 34 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 153
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=78.07 E-value=13 Score=31.62 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=52.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
.+...|..-....++.++++...|....++++.|+..+++.+.+-|...+.++.+.+++--++
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 566778888888889999999999999999999999999999999888888887777765433
No 154
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=78.04 E-value=9.1 Score=28.04 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.+.|..++..|++|+..||.+.+.|.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455554444443
No 155
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=77.78 E-value=17 Score=32.21 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHH
Q 028999 54 EKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTES-------QELKETN-EKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 54 ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v-------~~L~~~~-~~L~~ei~~L~~eknELr 125 (200)
-|++++.|+..+..|.+.. | +-..|-.-+..|+++. +.+.... ..|..+ ++++.+++++-
T Consensus 22 lr~~~eql~~~i~~L~~~a-p----------~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a 89 (302)
T 3ibp_A 22 LRQEQEQLQSRIQSLMQRA-P----------VWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEVG 89 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-h----------HHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4566677777777776665 3 3334445555555543 2333333 445555 78888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 126 EEKLILKADKEKLEQ 140 (200)
Q Consensus 126 ~Ek~~Lk~e~e~L~~ 140 (200)
.++..|..+|++|.+
T Consensus 90 ~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 90 ARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 888888888888765
No 156
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=77.71 E-value=3.6 Score=31.95 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 028999 90 IRVLNQLRT 98 (200)
Q Consensus 90 I~YIk~L~~ 98 (200)
++|+.+.+.
T Consensus 6 ~~~~~~~~~ 14 (171)
T 2zvf_A 6 IEAVEEMER 14 (171)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 157
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.50 E-value=8.1 Score=35.42 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
+|..+|+.++.-|++....--..++.|+.-+.+++-+.++|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443222255666666666666666665444
No 158
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=77.43 E-value=12 Score=26.70 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
.+++..+..|+.+...++.++.....|..+|-+=|..|..||..
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444455555555555555555555555555555555555543
No 159
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.26 E-value=2.8 Score=39.97 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=7.8
Q ss_pred HHHhHHHHhhhc
Q 028999 61 LNDRFLDLSCIL 72 (200)
Q Consensus 61 iNe~F~~Lr~lL 72 (200)
+..++++|+..|
T Consensus 62 ltkrINELKnqL 73 (562)
T 3ghg_A 62 FTNRINKLKNSL 73 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666677776
No 160
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=77.16 E-value=9 Score=24.73 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
..|+...++|....+||.+..+.|+.|..-|.|-+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34445555555555555555555555555555443
No 161
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=77.04 E-value=12 Score=24.07 Aligned_cols=35 Identities=37% Similarity=0.429 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
+++|+.-+++|++.|..|..--+.|+-.+.||.=|
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaelefe 39 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELEFE 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Confidence 34455555555555554444333444445554433
No 162
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=76.68 E-value=6 Score=32.73 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
||..|-..++.|+.+|..|+.+.+.|+.|-|+.
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556655555555555555555544
No 163
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=76.51 E-value=19 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 121 KNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 121 knELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..|......+..+.+.|+.+|..+
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444455554
No 164
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=76.32 E-value=5.1 Score=24.83 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei 114 (200)
+||+.++++|-.++..|+.|+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444433333
No 165
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.32 E-value=8.7 Score=27.32 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 116 SLKAEKNELREEKLILK 132 (200)
Q Consensus 116 ~L~~eknELr~Ek~~Lk 132 (200)
.|..++..|+.|+..|+
T Consensus 58 ~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 166
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=76.24 E-value=14 Score=26.15 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
.+++..+..|+.+...++.++.....|..+|.+=|..|..||..-..-|
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777788888888888888876654433
No 167
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.20 E-value=9.9 Score=38.57 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHH
Q 028999 49 SKACREKLRRERLN 62 (200)
Q Consensus 49 sH~~~ER~RRekiN 62 (200)
.....|..|.++++
T Consensus 779 ~l~~LE~~r~~~l~ 792 (1184)
T 1i84_S 779 VLAHLEEERDLKIT 792 (1184)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455655554443
No 168
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=76.12 E-value=3.7 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIK 115 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~ 115 (200)
+||...|++|-.++..|+.++.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444444443333
No 169
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.07 E-value=16 Score=34.04 Aligned_cols=53 Identities=32% Similarity=0.522 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIK------------------SLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~------------------~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
-++|+.++++|+.+...+..+|. +|+.+..+|+++...|+.+...++.++...
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444 444444555555555555555566666553
No 170
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=76.01 E-value=5.1 Score=24.82 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.+|++.+++|-.++.+|.+|..+||
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3566666666666666666665554
No 171
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.98 E-value=4.4 Score=25.12 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 028999 120 EKNELREEKLIL 131 (200)
Q Consensus 120 eknELr~Ek~~L 131 (200)
++++|+.++..|
T Consensus 15 DIddlkrQN~~L 26 (34)
T 1a93_B 15 DIDDLKRQNALL 26 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 172
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.60 E-value=20 Score=25.78 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028999 125 REEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 125 r~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+....|...+..|+.+++.+
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666654
No 173
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.50 E-value=14 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNE 123 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknE 123 (200)
|.+|+..++.|+.+.+.++.....|...+.+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 174
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=75.21 E-value=7.1 Score=23.54 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L 117 (200)
+|++++.+.+.+|-+|+.++..|
T Consensus 5 qlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 44555554444444444444333
No 175
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=75.18 E-value=6.4 Score=24.65 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
+|+.++.+|-.++.+|.+|..+|+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555566666666666555555543
No 176
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=75.06 E-value=5.5 Score=33.25 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
..|..|..++..|..+++....+++.|+.++..++...
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666666666555555555555555555444433
No 177
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=74.96 E-value=15 Score=26.65 Aligned_cols=28 Identities=39% Similarity=0.480 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
.+|..|..++..+..+++.|++|+..|+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666665554
No 178
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=74.78 E-value=16 Score=24.23 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++.+|++.|..|-. ...+|...-..+.+||+||..-|+.
T Consensus 5 ~l~kLKe~n~~L~~-------kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 5 QILRLKQINIQLAT-------KIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45556666666544 4455555556667888888887765
No 179
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=74.75 E-value=5.7 Score=24.58 Aligned_cols=22 Identities=5% Similarity=0.279 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~L 131 (200)
|+..+++|-.++.+|.+|..+|
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHH
Confidence 3444444444444444444443
No 180
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=74.58 E-value=22 Score=25.90 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.2
Q ss_pred HhHHHH
Q 028999 63 DRFLDL 68 (200)
Q Consensus 63 e~F~~L 68 (200)
..+..|
T Consensus 9 kKm~~l 14 (101)
T 3u59_A 9 KKMQML 14 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 181
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=74.58 E-value=4.4 Score=25.09 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ 119 (200)
++||+..|++|-.++..|+.++..|+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 456777777777777777666666543
No 182
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=74.51 E-value=15 Score=26.83 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.|+++.+. ++|..-.+.|.+++..-..++.+|.++..+.+.-|..|.
T Consensus 32 ~Yfrqkek--EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 32 RYFRARAK--EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35543332 233333334444444444455555444444444444443
No 183
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.45 E-value=7.4 Score=27.90 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.|..|+++...-+.+...|++.+.--....+.|-||...|..|..-|++.|..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 44445555544444555555544444444445666666666666666655543
No 184
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=74.45 E-value=16 Score=26.24 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETN 107 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~ 107 (200)
+.+..+..++..|+...
T Consensus 14 eEm~~~eeel~~lke~l 30 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDL 30 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 185
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=74.32 E-value=1.5 Score=37.40 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++|+.|++++.+|+.+..++ ..|+.|.++|+..|.
T Consensus 26 ~eN~~Lk~e~~~l~~~~~~~----~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 26 TENQHLKERLEELAQLESEV----ADLKKENKDLKESLD 60 (255)
T ss_dssp CTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 34444444444443333332 345556666666555
No 186
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=74.14 E-value=21 Score=25.34 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+..+...+..|..+...++.+.++.-++++
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555666666666655544444
No 187
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.03 E-value=1.9 Score=31.16 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~L 131 (200)
|++.|.+|....++|..||..|
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 188
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=73.34 E-value=22 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..++.++..|+....++---+..|..+++.|..++.-+
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555666667777777666543
No 189
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.00 E-value=13 Score=26.92 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 82 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 82 KasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
.+-|..+--+.+..|....+.++...+.|..++..+..+.++++...
T Consensus 61 ~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 61 TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566666666666666666666666666666655544
No 190
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=72.96 E-value=61 Score=30.18 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKE 105 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~ 105 (200)
.|-+||+.|+......+.
T Consensus 118 ~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 555666666555444443
No 191
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.93 E-value=6.8 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
+|...+++|-.++.+|.+|..+|+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456666666666666655555553
No 192
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.88 E-value=12 Score=33.81 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+-|..|+++..+|+.+.+.++.++++|+.++.+...+.-.|..++..|.-.++-.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4567788899999999999999999998887777766677777777766555554
No 193
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=72.48 E-value=2 Score=36.59 Aligned_cols=43 Identities=35% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
+.+..+..|+++.++|++++..|+.+. .+..+|+.|+.+|+..
T Consensus 16 ~~~~~~~~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 16 DGVVDLKNTYTENQHLKERLEELAQLE----SEVADLKKENKDLKES 58 (255)
T ss_dssp ----------CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344455556667777777777666543 3445555566666544
No 194
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=72.38 E-value=8.1 Score=31.96 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
|+.-+++-+..|+.+++.|+++|+.|+.+-.+...+.
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777788888888888888888887776665543
No 195
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=72.04 E-value=24 Score=25.21 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
.-|.+|++.+.--.+..+.|..++=.|..|.|-|++..+.|++|
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 45666666554333455778888888888888888887777654
No 196
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.93 E-value=23 Score=24.85 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 124 LREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk 143 (200)
|......|..+.++.+.+|.
T Consensus 46 L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 46 LQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 197
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=71.71 E-value=16 Score=24.54 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
.++|-.+++.|+.|..-||.|...=-.++.+|+.+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 456666677777777777766665555556665543
No 198
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=71.69 E-value=22 Score=33.22 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
.|.++.++|+.++.+|.++...++.+++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 199
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=71.66 E-value=25 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
+.+++..+..|+.+...++.++.....|..+|-+=|..|..||..-.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455556666666666666666666677777777777777765433
No 200
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.32 E-value=11 Score=27.43 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 111 QEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
..++.++..++.+|+.+...++++++.++..+..+.
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555566666666666666666666666653
No 201
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.11 E-value=17 Score=41.36 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
|-+-+..++.+++++++..+.|+++.+++..|+++|++|
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 202
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.98 E-value=54 Score=28.91 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 123 ELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~~qlk 143 (200)
||..|...|..+++.++.|++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444333
No 203
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=70.42 E-value=11 Score=22.79 Aligned_cols=19 Identities=37% Similarity=0.398 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEI 114 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei 114 (200)
|+.++..|+++...|.-++
T Consensus 7 lkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 204
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=70.37 E-value=13 Score=27.03 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+....+.....+..++.+....+..|..|+++|+.+++.+
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444556666667778888888888888775
No 205
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=70.24 E-value=34 Score=26.16 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 103 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|+...+.|++++.+|...+..|.......+..+...++++...
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444555555555555555444444444444444444443
No 206
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=70.22 E-value=25 Score=32.17 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIK----------SLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~----------~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
-++|+.++++|+.+...+..+|. +|+.+..+|+++...|+.+...++.++...
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566655555555544 455566666666667777777777777664
No 207
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=70.19 E-value=18 Score=23.95 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
|..|+.-...|-.....|+..-.++.+|+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEi 34 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEI 34 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 33444443344333333433333333333
No 208
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=69.71 E-value=32 Score=25.63 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028999 129 LILKADKEKLEQQLKVM 145 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk~~ 145 (200)
.++..+++.|+.++..+
T Consensus 64 Ekl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 64 EKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHTTSHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 34555555565555554
No 209
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.66 E-value=13 Score=33.82 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
-+.+|++++++|+.++++++.++++++.++.+...+.-.|..++..|...++-.
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 356777888888888888888888888887776666677777777666555543
No 210
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=69.61 E-value=30 Score=25.29 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIK 115 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~ 115 (200)
|..|..+...+..+...++.+..
T Consensus 27 L~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 211
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.30 E-value=27 Score=32.65 Aligned_cols=52 Identities=29% Similarity=0.371 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEI----------KSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei----------~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++|+.++++|+.+...+..+| .+|..+..+|+++...|+.+...++.++...
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444444 4456666677777777777777777777654
No 212
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=69.21 E-value=55 Score=30.04 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=40.5
Q ss_pred HhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 63 DRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 63 e~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
+.+..|+....+...++.+ -...+++|-+.+.+++..++.........|++|+...+-.+.....|+..+..|
T Consensus 59 ~~v~~ik~~~~~~q~~~~~---n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 59 QLIKAIQLTYNPDESSKPN---MIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHCTTTCCCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCCCCc---chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555343322222 255677777777777777776666666666666665555544444444444433
No 213
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.20 E-value=30 Score=32.29 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.|.++.++|+.++.+|.++...+..+++.+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665555543
No 214
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=68.64 E-value=26 Score=25.61 Aligned_cols=27 Identities=41% Similarity=0.482 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
+|++|...+..+..|++.|+.|+..|+
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554443
No 215
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=68.35 E-value=9.8 Score=23.87 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 100 SQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 100 v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
.++|..+.+.-+++|..|+.+..||
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445555555555555555555544
No 216
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=67.84 E-value=34 Score=31.28 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
|.+++++|+.++.+|.++...+..++
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 217
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=67.53 E-value=6.7 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQE 112 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ 112 (200)
+|+.++....+.|..++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~ 48 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEA 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333333
No 218
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=67.52 E-value=21 Score=27.97 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHhHHHHhhh
Q 028999 60 RLNDRFLDLSCI 71 (200)
Q Consensus 60 kiNe~F~~Lr~l 71 (200)
+|+|++.+|+..
T Consensus 6 ~mkDRl~eL~~~ 17 (180)
T 1s94_A 6 RTKDRLAALKAA 17 (180)
T ss_dssp ------------
T ss_pred chhHHHHHHhcc
Confidence 466777777764
No 219
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.46 E-value=4.1 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei 114 (200)
.||.+|+.+++.|+..+..|+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888887777766543
No 220
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=67.39 E-value=22 Score=24.33 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 120 EKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++...+.|...|+..+..|+-+|.++
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444556666666666666666543
No 221
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=67.36 E-value=26 Score=25.58 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
.+|..|...+..|.-|++.|+.++..|+.=.+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666544443
No 222
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=67.32 E-value=11 Score=23.29 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~E 127 (200)
+...+.+|++|+.+.+-|+++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 223
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=67.25 E-value=23 Score=25.61 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
|.+|.+--.+|+.++..++.+...|+++.+.|+.-.+
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666665555555555555543333
No 224
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.84 E-value=4.2 Score=29.39 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 111 QEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
++|++.||..+.||.+.+..|+.|...|.+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777776664
No 225
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=66.59 E-value=63 Score=28.63 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 115 KSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++.+++..|+=.-.+|.++++-|++-|..+
T Consensus 362 ~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 362 QEALQGLQVALCSQAKLQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4556666677777778888888888888876
No 226
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.32 E-value=34 Score=30.28 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028999 129 LILKADKEKLEQQLKVM 145 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk~~ 145 (200)
..|..|+-.|+++|+..
T Consensus 446 ~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555543
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.30 E-value=9.8 Score=34.66 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
|..++.+|+.+.+-|+.+.+.++.+.+.++.|...++.|+++|+
T Consensus 47 l~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 47 IYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444444444444455555555555555555555554
No 228
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.22 E-value=5.4 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 119 AEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 119 ~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
.++..|..|+..|+.++++|+.
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 229
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=66.19 E-value=24 Score=29.70 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 87 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 87 ~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk 132 (200)
++-++.+++|+.+.-..-++...|+.....|.+|+++|+.....|+
T Consensus 26 ~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 26 SERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3455677777776666666666666666666666666655555444
No 230
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=66.09 E-value=13 Score=22.98 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~L 131 (200)
|..++++|-.++.+|.+|..+|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333444444444444444333
No 231
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=66.08 E-value=52 Score=28.11 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHHhhhc
Q 028999 54 EKLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 54 ER~RRekiNe~F~~Lr~lL 72 (200)
+.+|=+.+-.++..+.+.|
T Consensus 61 ~~~~~~~~~~k~~~~~~~L 79 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVV 79 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHh
Confidence 3344444444555555555
No 232
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.94 E-value=33 Score=24.35 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 123 ELREEKLILKADKEKLEQ 140 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~~ 140 (200)
+|..+...++.+++.+..
T Consensus 60 ~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 60 KVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455555544443
No 233
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=65.81 E-value=32 Score=25.63 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
+.+|++|++ .+++.|+...+.|+..+..++.+++.+.++..
T Consensus 86 ~~eA~~~l~---~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 86 FEDAMESIK---SQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666644 45556666666666655555555555544443
No 234
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=65.81 E-value=29 Score=28.87 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
+..|..+++....+++.|++++..++.......
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444444444444445544444444443333
No 235
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=65.17 E-value=21 Score=24.39 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++.+|+..|.+|-.++ ++|....+...+||+||..-|+.-
T Consensus 11 ~q~~kLKq~n~~L~~kv-------~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKI-------QHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666666665544 445555555667888888777754
No 236
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.09 E-value=20 Score=25.54 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
+-|..+--+.+..|....+.++...+.|..++..+..+.++++.
T Consensus 57 vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 57 ILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666665655555555555555555555544
No 237
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=65.06 E-value=34 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
.|...++.|..+++.|...++.+..+...++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444443
No 238
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=64.97 E-value=30 Score=25.23 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.+.|..+++.+++|...||.+.+.|
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 239
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=64.85 E-value=23 Score=29.90 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQE-LK---ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 91 ~YIk~L~~~v~~-L~---~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
.|-+.|-++.+. |. .+|+.|..+|..|.-|++.|++|+..|+.=.+.++
T Consensus 97 ~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443222 22 46677777777777777777777776665444443
No 240
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.62 E-value=14 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLK 118 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~ 118 (200)
++||...+++|-.++..|+.|+..|+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666666666666666666655554
No 241
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=64.56 E-value=30 Score=23.93 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
-...-+..|..|-.-.|.|.+|...++.++.+|+.+
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 333445566667777777777777777777777654
No 242
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=64.50 E-value=3.3 Score=35.29 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.++..+..+.+.-..++..+.+.|..++..++.+++.|+.++.+...+..-.+.....|...+...
T Consensus 137 E~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i 202 (250)
T 2ve7_C 137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKI 202 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhc
Confidence 477777777777777777777777777777777777776666655554444445555555555543
No 243
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=64.32 E-value=28 Score=31.48 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHhhhc-CCCCCCCCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCIL-EPGRPARTDKPA-------ILDDAIRVLNQLRTESQELKETNEKLQEEI-KSLKAEKNELREEK 128 (200)
Q Consensus 58 RekiNe~F~~Lr~lL-pP~~~~K~dKas-------IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei-~~L~~eknELr~Ek 128 (200)
-+.+.++|.+|...+ .|+.....+|+. -|...++.+++|+..++.++.-.+-+.++. .++ ..++.+|.
T Consensus 27 l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~e~---~~~a~~e~ 103 (365)
T 1gqe_A 27 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEET---FNEAVAEL 103 (365)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---HHHHHHHH
Confidence 456677788887766 232211223332 333444444444444444333332222210 011 23345555
Q ss_pred HHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQ 140 (200)
Q Consensus 129 ~~Lk~e~e~L~~ 140 (200)
..|+.+++.|+.
T Consensus 104 ~~l~~~l~~le~ 115 (365)
T 1gqe_A 104 DALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH
Confidence 566666666654
No 244
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=64.03 E-value=33 Score=25.16 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
..+..|+.+...++.++.....+..+|.+=|..|..||..
T Consensus 44 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 44 RMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444555555555555443
No 245
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.99 E-value=25 Score=27.70 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 028999 129 LILKADKEKLE 139 (200)
Q Consensus 129 ~~Lk~e~e~L~ 139 (200)
..+..|+|.|-
T Consensus 70 ~~ie~ElE~LT 80 (135)
T 2e7s_A 70 DKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 246
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.90 E-value=29 Score=39.51 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 97 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 97 ~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
+++.++.+.+...|++++..|+.+.+++..|+..|+.+.+..+
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555555544433
No 247
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=62.81 E-value=13 Score=27.73 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 028999 108 EKLQEEIK-SLKAEKNELREEKLILKA--DKEKLEQQLKV 144 (200)
Q Consensus 108 ~~L~~ei~-~L~~eknELr~Ek~~Lk~--e~e~L~~qlk~ 144 (200)
..|+..++ +|....+.|..+...|-. ++|||-.++..
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~ 75 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKN 75 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 34455555 555555555444443333 45555544443
No 248
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=62.67 E-value=47 Score=25.06 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=27.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e 134 (200)
.+|.++|.+.+. .+.+++.|+.++..|+..+.+......++-.++..|+.+
T Consensus 4 ~e~~~~~~~~~~----~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 4 DERRALLERCLK----GEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 455566655443 334455555555555555555555555565555555443
No 249
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=62.48 E-value=33 Score=25.58 Aligned_cols=46 Identities=11% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
+.+.++-|++..+.|...++.|...+.+++++...+..+++.+.++
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455556666777777777777777777777666666666666554
No 250
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=62.26 E-value=18 Score=25.36 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 120 EKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++.+|+-++..||-++.++-.+.+
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~~~~ 68 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMIIEYR 68 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566666666667666666655443
No 251
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.13 E-value=39 Score=31.81 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028999 49 SKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 49 sH~~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~ 104 (200)
-.-...+..| .++.++.+|+..|....-.-.+=-.......+|+++-+.+++..+
T Consensus 52 LqglL~kqer-dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dnd 106 (491)
T 1m1j_A 52 MQGIIDDTDQ-NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLD 106 (491)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhh-hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccch
Confidence 3334444444 345566677766622110112223344455555555444444333
No 252
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=61.97 E-value=42 Score=24.18 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 123 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknE 123 (200)
-..+|+++.+++.-. +.. ..+|.+||. |+..-.+|....++.......+.+.+..|...+++
T Consensus 32 A~~vd~~~~~i~~~~-~~~--~~~r~~vma-ALnladel~~~~~~~~~~~~~~~~~i~~L~~~le~ 93 (104)
T 1t3u_A 32 ARYLDGKMREIRSSG-KVI--GADRVAVMA-ALNITHDLLHRKERLDQESSSTRERVRELLDRVDR 93 (104)
T ss_dssp HHHHHHHHHHHHTTT-CSC--SHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCC--CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999987 432 356655543 44544444433333333333444444444444433
No 253
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=61.68 E-value=37 Score=28.63 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L 117 (200)
-|.+|++--++|+.+++.|+.++..|+++..+|
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666555555555544444
No 254
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.51 E-value=16 Score=27.28 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028999 123 ELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+..|+..|..+++.|+.|+..+
T Consensus 65 kl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443
No 255
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.44 E-value=44 Score=30.19 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQE--------EIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~--------ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
-++|+.++++|+.+...+.. +..+|+.+..+|+++...|+.+...++.++...
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655544443 345667777777777777777777777777664
No 256
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.23 E-value=94 Score=27.99 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 112 EEIKSLKAEKNELREEK 128 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek 128 (200)
+++++|+.++.+|.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 71 ARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 257
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=61.18 E-value=21 Score=27.08 Aligned_cols=48 Identities=29% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKL----ILKADKEKLEQQLKV 144 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~----~Lk~e~e~L~~qlk~ 144 (200)
|+.++.+.+.+...|..++.+|+.....|..|.. +| .+||-|=|....
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL-RdIEiLcQe~~~ 60 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL-RDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444444444444444444444444433332 22 345556555443
No 258
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=61.16 E-value=49 Score=24.90 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHH
Q 028999 57 RRERLNDRFLDL 68 (200)
Q Consensus 57 RRekiNe~F~~L 68 (200)
||.-|.++..-|
T Consensus 26 KkkiLaER~kpL 37 (106)
T 1j1d_B 26 KKKILAERRKVL 37 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC
Confidence 444566666544
No 259
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=61.06 E-value=18 Score=26.03 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
+..-|+.++.+.+.|+.....|+..+.+-+.+-+.++.|...+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888888777777777776666666665443
No 260
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=60.86 E-value=28 Score=23.79 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 123 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknE 123 (200)
+-++|=+-+..|++...+|-.....|+..-.+..+|+..
T Consensus 5 VktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieR 43 (58)
T 3a2a_A 5 SKTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIER 43 (58)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556665555555555554444444444443
No 261
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=60.81 E-value=51 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 120 EKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|+.+|......-.-||+.|..++..+
T Consensus 64 EKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 64 EKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34444444444444555555555555
No 262
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=60.30 E-value=7 Score=30.28 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=5.9
Q ss_pred HHhHHHHhhhc
Q 028999 62 NDRFLDLSCIL 72 (200)
Q Consensus 62 Ne~F~~Lr~lL 72 (200)
.+.+.++..+|
T Consensus 13 ~~~l~~~a~~L 23 (171)
T 2zvf_A 13 ERLLREASSIL 23 (171)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 34555555555
No 263
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.25 E-value=64 Score=25.81 Aligned_cols=8 Identities=50% Similarity=0.422 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 028999 137 KLEQQLKV 144 (200)
Q Consensus 137 ~L~~qlk~ 144 (200)
.|+.||..
T Consensus 133 ~lq~ql~~ 140 (154)
T 2ocy_A 133 TLTLQLKN 140 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 264
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.06 E-value=44 Score=30.49 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 103 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+.++...|+..+.....++.+|+.....++..++.|++++..+
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444455555577778877778888888888877665
No 265
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.86 E-value=47 Score=24.12 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.|-.+...|+-.+.+|..|+.+..-..-..|.|+.-|++||..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3334444444445555555544443334555666667776654
No 266
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=59.59 E-value=30 Score=28.27 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
..+.|......|..+++.|..+...|..+++.|+.
T Consensus 50 ~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 50 FHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444
No 267
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=59.56 E-value=42 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=14.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKETN 107 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~~~ 107 (200)
..|-..|.++-..|.+..+-+++|+-+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555555555555555554443
No 268
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.33 E-value=47 Score=23.90 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
|...+.++..+......|..++..+..++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 269
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.14 E-value=27 Score=31.98 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHhHHHHhhhc
Q 028999 60 RLNDRFLDLSCIL 72 (200)
Q Consensus 60 kiNe~F~~Lr~lL 72 (200)
.+..+|.+|+..|
T Consensus 64 ~~~~rIe~L~~~L 76 (390)
T 1deq_A 64 DFTSRINKLRDSL 76 (390)
T ss_pred hHHHHHHHHHHHH
Confidence 4555666666666
No 270
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=58.90 E-value=18 Score=31.58 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
+++.|+.+++.|++++.+|+.+++.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555555555555555544443
No 271
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=58.61 E-value=44 Score=24.18 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=9.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKE 105 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~ 105 (200)
.|-+.|.++=..|.+...-+++++-
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMel 55 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDV 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333333333333
No 272
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.59 E-value=59 Score=24.81 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETN 107 (200)
Q Consensus 94 k~L~~~v~~L~~~~ 107 (200)
+.|+.+..+|+++.
T Consensus 9 ~~lq~~~~ql~~qL 22 (112)
T 1x79_B 9 KKLQLMLRQANDQL 22 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444443343333
No 273
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=58.46 E-value=16 Score=25.68 Aligned_cols=31 Identities=32% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
-.+.+++|..++++-.+|...|+.++.+.+.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777776766667666666554
No 274
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=58.39 E-value=57 Score=26.39 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 112 EEIKSLKAEKNELREEK 128 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek 128 (200)
..|+.|..|+.+|+.+.
T Consensus 113 akI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 113 AKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 275
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=57.63 E-value=32 Score=28.91 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
..++|+.+....-.+..+|+.-.++|+.|+..|+..+++|+
T Consensus 31 ~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 31 ALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 35666677777777777777777777777777777777775
No 276
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=57.45 E-value=36 Score=25.67 Aligned_cols=60 Identities=18% Similarity=0.077 Sum_probs=37.4
Q ss_pred HhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 68 LSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 68 Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
|....||-+....+-..+ -+.+++|...+..|+++.=.|+..+..-.-|+++|+.....|
T Consensus 30 LaER~~pL~id~l~~~~L----~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 30 LAERRKPLNIDHLNEDKL----RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHTCCCCCCSSSCSSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 444445544333333332 366777888888888887777777777777777776655444
No 277
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.96 E-value=12 Score=34.17 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
...|+.+++.|+.|...+..|+..++.++..++.+++.....
T Consensus 34 ~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~ 75 (434)
T 4b4t_M 34 AKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQL 75 (434)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 333444455555555555555555555555555555554433
No 278
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=56.95 E-value=57 Score=24.26 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
....+|+.++.+|+.+...|+.-...+ .-||..-.-|..|.++-..
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs~a----K~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQNNS----KLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555544333222 2244444455555555444
No 279
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=56.65 E-value=0.3 Score=37.37 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
++.+|..++..|..|...|+.|...|..++
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~ 88 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLEL 88 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 280
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=56.62 E-value=42 Score=24.51 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKA----EKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~----eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.+.++|+.-++.|+.....|.+-|.-.+. |+..=+.-...++.+++.|+.++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666555544221 111222223455666666666554
No 281
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=56.62 E-value=27 Score=29.99 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHhHHHHhhhcCC
Q 028999 51 ACREKLRRERLNDRFLDLSCILEP 74 (200)
Q Consensus 51 ~~~ER~RRekiNe~F~~Lr~lLpP 74 (200)
.+.|..+ +++..+..|....++
T Consensus 64 ~~~~~~~--k~~~~~~~L~~~~~~ 85 (357)
T 3rrk_A 64 RWEAVVS--QAEQSLTVVGLATVP 85 (357)
T ss_dssp HHHHHHH--HHHHHHHHHTCCCCC
T ss_pred HHHHHHH--HHHHHHHHhcccccc
Confidence 3444443 467778888877643
No 282
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=56.57 E-value=46 Score=29.40 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIK------SLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~------~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
+|+..|++++++|..+.++++..++ ..+..+.++.++...++..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666655543331 1133344444444444444443
No 283
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.51 E-value=74 Score=25.67 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADK 135 (200)
Q Consensus 122 nELr~Ek~~Lk~e~ 135 (200)
++|.+|...|++++
T Consensus 116 ~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 116 NAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 284
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=56.48 E-value=29 Score=26.66 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 141 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~q 141 (200)
+.+|++|++ .+++.|+...+.|+..+ .++++....+...+..+.++
T Consensus 96 ~~eA~~~l~---~ri~~l~~~l~~l~~~l-------~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 96 IDEAISFLE---KRLKEYDEAIKKTQGAL-------AELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 566776654 44555555555544444 44444444444455555543
No 285
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=56.25 E-value=39 Score=27.75 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
..+++|+.+++.|++++...+.+...++++
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444444444
No 286
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.15 E-value=51 Score=23.31 Aligned_cols=44 Identities=11% Similarity=0.301 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
.+..-++.++.+.+.|+.....|+..+.+-+.+-+.++.|...+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888777777666666665443
No 287
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.13 E-value=27 Score=21.98 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 111 QEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~L 131 (200)
+++|..|..++..|++|+..|
T Consensus 14 keQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555544443
No 288
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=55.88 E-value=49 Score=23.04 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 124 LREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
|+....+|..|++.+..+|.+
T Consensus 37 L~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 37 NNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444445555566666555554
No 289
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.52 E-value=56 Score=24.72 Aligned_cols=13 Identities=8% Similarity=0.332 Sum_probs=7.0
Q ss_pred HHHHhHHHHhhhc
Q 028999 60 RLNDRFLDLSCIL 72 (200)
Q Consensus 60 kiNe~F~~Lr~lL 72 (200)
+||.....|..+|
T Consensus 25 ~In~~vs~l~r~v 37 (130)
T 2dnx_A 25 RISQATAQIKNLM 37 (130)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555555
No 290
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=55.48 E-value=32 Score=25.89 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+|++....|-+.|..|..|+.+|......-.-||+.|..++..+
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444555555555556666555555556666676666655
No 291
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=55.43 E-value=44 Score=24.43 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQQL 142 (200)
Q Consensus 129 ~~Lk~e~e~L~~ql 142 (200)
-.-|+++++|+.++
T Consensus 88 r~Yk~dL~~lk~el 101 (102)
T 2qyw_A 88 RNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 33344444444443
No 292
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=55.03 E-value=64 Score=24.18 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=9.3
Q ss_pred HHHHhhhcCCCCCCCCChhhHH
Q 028999 65 FLDLSCILEPGRPARTDKPAIL 86 (200)
Q Consensus 65 F~~Lr~lLpP~~~~K~dKasIL 86 (200)
+.+||..| -+ ...+|+.|.
T Consensus 22 I~~LR~qi-d~--~~~e~a~l~ 40 (119)
T 3ol1_A 22 MRELRRQV-DQ--LTNDKARVE 40 (119)
T ss_dssp HHHHHHHH-HH--HHHHHHHHH
T ss_pred HHHHHHHH-HH--HHHHHHHHH
Confidence 44566665 21 235565554
No 293
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=54.92 E-value=31 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
-+..|+.++..|..+-..|.+.++.+.+.+..+.++
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355677777777776667777777776666666554
No 294
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=54.72 E-value=22 Score=29.02 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
|+..-+.|......|+.++..|..++++|..+...|+....+++.-.
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777888888888888888888888888777765533
No 295
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=54.48 E-value=58 Score=23.51 Aligned_cols=55 Identities=13% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSL--K-AEKNELREEKLILKADKEK-LEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L--~-~eknELr~Ek~~Lk~e~e~-L~~qlk~~ 145 (200)
..|++.+..+++..+-..++.-|++.+ - ..+..+....-.-|+++++ |+.+++.+
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555 1 2334444444444556666 66666543
No 296
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=54.35 E-value=56 Score=23.28 Aligned_cols=42 Identities=26% Similarity=0.523 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPTHP 157 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~~~~p 157 (200)
...++..|..++.|.+-+......++.++.-|+. +|+.|-.|
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~---------ag~ip~AP 51 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQE---------AGYIPEAP 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCCCCCCC
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHHh---------cCCCCCCC
Confidence 4456666777777777777777777777766665 57766444
No 297
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=53.76 E-value=58 Score=23.26 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
|++|+.++..+..++..|.-+++.++...+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345666666666555555555554444433
No 298
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=53.37 E-value=63 Score=23.56 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAE 120 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~e 120 (200)
+|+.+++.|+.+..+|..++.+++.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555543
No 299
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=53.35 E-value=90 Score=25.34 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=42.0
Q ss_pred CChhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 80 TDKPAILDDA---IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 80 ~dKasIL~dA---I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..+.+|+... ...|..|+..-++|...........++|..+.|.|+-+...|...+++.-.-|+..
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 3444554432 34455555566666666666667777888888888888888877777655445443
No 300
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=53.17 E-value=0.19 Score=38.50 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+...|+.++..|..+++.|..|+..|+.|++.+.+.++.+
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666665555544443
No 301
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=52.96 E-value=66 Score=29.96 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=17.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 118 KAE-KNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 118 ~~e-knELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
..+ ..+|+++...|+.+...++.++...
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5556666666667777777777553
No 302
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=52.56 E-value=20 Score=29.79 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEI 114 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei 114 (200)
.++.+|+.+|..|++|.
T Consensus 161 ~~i~~L~a~N~hLqkEN 177 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKEN 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 303
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=51.79 E-value=41 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~ekn 122 (200)
+.+.+.++.+|..+...|...+..|..|.+
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666555
No 304
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=51.58 E-value=24 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAE 120 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~e 120 (200)
..+.+.+|...-+.|++....|+.++..|...
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555555443
No 305
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=51.55 E-value=37 Score=26.43 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=3.4
Q ss_pred CCCCCCCc
Q 028999 151 GYMPTHPA 158 (200)
Q Consensus 151 g~~~~~p~ 158 (200)
|++--||+
T Consensus 96 GLVVVHPM 103 (123)
T 2lf0_A 96 GLVVVHPM 103 (123)
T ss_dssp SCEEECSS
T ss_pred ceeEecCc
Confidence 44443444
No 306
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.51 E-value=34 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQ 101 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~ 101 (200)
|+++-+-|..|+.+++
T Consensus 10 LeEtkeQi~~l~~kl~ 25 (38)
T 2l5g_A 10 LEETKEQILKLEEKLL 25 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 307
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=51.20 E-value=38 Score=30.55 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 94 NQLRTESQELKETNEKLQEEIK----------SLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~----------~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++|+.++++|+.+...+..+|. +|+.+..+|+++...|+.+...++.++...
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556655555555543 345566667777777777777777777664
No 308
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=51.06 E-value=18 Score=26.90 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 117 LKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 117 L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
|+.++++|+++...++.|+++|+
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444333
No 309
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=51.01 E-value=99 Score=26.35 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHhhhcCC
Q 028999 58 RERLNDRFLDLSCILEP 74 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP 74 (200)
|+.|+.-+.+|+.-|.|
T Consensus 17 r~~l~~~~eel~~~L~P 33 (273)
T 3s84_A 17 KEEIGKELEELRARLLP 33 (273)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45667777888887755
No 310
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.86 E-value=18 Score=32.83 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
++++++.....+.+.++.|..+.++|..+...++.|++
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELR 63 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555566655544444444443
No 311
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=50.68 E-value=28 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 028999 127 EKLILKADKEKLE 139 (200)
Q Consensus 127 Ek~~Lk~e~e~L~ 139 (200)
|+..|.+|...|+
T Consensus 16 enyqleqevaqle 28 (33)
T 1fmh_A 16 ENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 3333333333333
No 312
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=50.66 E-value=36 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
..|..++..|+.+...|+.....+.++...+|.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544443
No 313
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=50.39 E-value=31 Score=31.19 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKN----------ELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn----------ELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
++-|..|-.+..++..+.+.|+.+...+..++. +|..+...|+.++..|+.+++.+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555444444432 23344445555555555555554
No 314
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=50.22 E-value=20 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028999 123 ELREEKLILKADKEKLEQQLKVMAMPTG 150 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~~qlk~~~~~p~ 150 (200)
+|+++...|+.++++++.+++.+..+|.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~~P~ 38 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRSPPL 38 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4677777778888888888877766654
No 315
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=50.16 E-value=9 Score=27.01 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~Lk~ 133 (200)
++..|+.++=.|+||...+-.
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~ 65 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMII 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 677777777777777765543
No 316
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=49.84 E-value=32 Score=25.70 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 028999 134 DKEKLEQQLKV 144 (200)
Q Consensus 134 e~e~L~~qlk~ 144 (200)
.+..++++|+.
T Consensus 28 ~i~~~~~~l~~ 38 (106)
T 2aze_B 28 LMNICTTQLRL 38 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 317
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=49.79 E-value=94 Score=24.51 Aligned_cols=55 Identities=11% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 91 RVLNQLRTE-------SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 91 ~YIk~L~~~-------v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+|++.|..+ ++.|+......++.+.+.+...++.+.-..++++-+.+|...+.++
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 318
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.19 E-value=66 Score=22.57 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|..+.+.+......|+.++..++.+......|-+.|-.=+-.|+.++.+.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666556566655566666666553
No 319
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=48.55 E-value=19 Score=26.39 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKA-EKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~-eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.|.+.+..+++.++-..++.-|++.+-. .+..+....-.-|+++++|+.+++.
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333211 1222333333334444444444444
No 320
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=48.42 E-value=75 Score=26.00 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 123 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknE 123 (200)
++.-|-+-|..|+.+++.|+.++....++...+..++..
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777766666666665555555443
No 321
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=48.06 E-value=47 Score=24.64 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETN 107 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~ 107 (200)
..-.++|+.++.+|..++
T Consensus 22 a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666665555544
No 322
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=47.30 E-value=99 Score=26.35 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLK------AEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~------~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+.-+..++.++...+.|..+|..|+ ..+..|++|..+..++..-.+.||
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333445555556667777777666 344556666555554444444343
No 323
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=47.23 E-value=99 Score=24.83 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 139 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~ 139 (200)
+++.|+.++..+.+.|+.-+.++.||..+...+|.=++|=+
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~ 46 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNR 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777888888777777765555543
No 324
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=47.17 E-value=72 Score=22.48 Aligned_cols=30 Identities=3% Similarity=0.254 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++.+..++..|......++.+.+.|+.+|.
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444443
No 325
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=47.15 E-value=1.1e+02 Score=24.38 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=40.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 79 RTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSL-------------KAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 79 K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L-------------~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
...|..++..--.-|.+|..+.++|+-+...+..+++.- ..=...+..|++.+...+..|.+|++.+
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777776655554444320 1111334456666666777777776664
No 326
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=46.77 E-value=10 Score=33.60 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 111 QEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++++..|+..+++++.+.+.|+..+..|+..+.
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444445555555554433
No 327
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=46.49 E-value=39 Score=24.72 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=11.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTESQELKE 105 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~v~~L~~ 105 (200)
..|-..|.++=..|.+.++-+++++-
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMel 70 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEE 70 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 328
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.11 E-value=15 Score=21.41 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 103 LKETNEKLQEEIKSLKAEKN 122 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~ekn 122 (200)
|+-+|+.|++.|..|++.+.
T Consensus 5 lefendaleqkiaalkqkia 24 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 329
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=45.43 E-value=1.1e+02 Score=23.93 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 92 VLNQLRTESQELKE-TNEKLQEEIKSLK--------AEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 92 YIk~L~~~v~~L~~-~~~~L~~ei~~L~--------~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
-+..|+.+++.|+. +...+.+.+.+-+ ++...-+++...+...+..|+..|....
T Consensus 10 g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 10 GYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 35667777777754 4444444454443 4555567788888999999999998764
No 330
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=45.02 E-value=1.1e+02 Score=24.92 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHhhhc
Q 028999 58 RERLNDRFLDLSCIL 72 (200)
Q Consensus 58 RekiNe~F~~Lr~lL 72 (200)
.|.|-+-|..++.-|
T Consensus 33 yd~l~e~y~r~sqEi 47 (170)
T 3l4q_C 33 YDQLYEEYTRTSQEL 47 (170)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHH
Confidence 356666666666666
No 331
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.86 E-value=21 Score=21.18 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L 117 (200)
-...|+.+|.+|...+++|
T Consensus 7 llasleaenkqlkakveel 25 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444
No 332
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=44.80 E-value=1.5e+02 Score=27.54 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQQLK 143 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk 143 (200)
..|+.++..|+.+++
T Consensus 114 ~~l~~~i~~le~~~~ 128 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQ 128 (484)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 333
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=44.58 E-value=90 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELREEK 128 (200)
Q Consensus 113 ei~~L~~eknELr~Ek 128 (200)
+|++-++.++.||+|-
T Consensus 73 qi~eAR~ALdaLR~eH 88 (98)
T 3f1i_H 73 QIRDARGALSALREEH 88 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677778888888876
No 334
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=43.91 E-value=24 Score=25.08 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 124 LREEKLILKADKEKLE 139 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~ 139 (200)
|.+++..||.||-||+
T Consensus 48 L~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 48 LMEQIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 335
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=43.77 E-value=85 Score=28.05 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=7.3
Q ss_pred HHHHHhHHHHhhhc
Q 028999 59 ERLNDRFLDLSCIL 72 (200)
Q Consensus 59 ekiNe~F~~Lr~lL 72 (200)
+.|-+-|..++.-|
T Consensus 143 ~~~~~~~~~~~~e~ 156 (373)
T 3hhm_B 143 DRLYEEYTRTSQEI 156 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHH
Confidence 44555555555444
No 336
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=43.47 E-value=1.1e+02 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 121 KNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 121 knELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+.|+.++...|+-.-.+|+.|...+
T Consensus 361 ~~e~~~~~~~~~~~~~~~~~q~~~~ 385 (406)
T 4dyl_A 361 LQEALQGLQVALCSQAKLQAQQELL 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456666667777777777776554
No 337
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=43.30 E-value=38 Score=22.07 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADK 135 (200)
Q Consensus 122 nELr~Ek~~Lk~e~ 135 (200)
.|+|.|.+++|.||
T Consensus 18 ~E~RkElqK~K~EI 31 (45)
T 1use_A 18 EEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 338
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.16 E-value=1e+02 Score=28.61 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..|+.....|+..+.+|+..+..
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666555543
No 339
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=43.07 E-value=30 Score=20.16 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.8
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 028999 80 TDKPAILDDAIRVLNQLRTE 99 (200)
Q Consensus 80 ~dKasIL~dAI~YIk~L~~~ 99 (200)
.+...+|-+|.+||...+.+
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45778999999999876653
No 340
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=43.02 E-value=1.2e+02 Score=23.71 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 52 CREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
..|+...++--++=..|....||-+..-.+- .+--++.++|...+..|+++.=.|+..+..-.-|+++|+
T Consensus 30 ~l~kE~e~k~eeKkkiLaER~~pL~id~ls~----~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~ 99 (133)
T 1j1d_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGF----AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLT 99 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCTTCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHH
Confidence 3455555555556666777776643332231 122234444444444455444444444433333344433
No 341
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.90 E-value=36 Score=30.87 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
...++.++++....+..|..+...|+.+...++.+++.+..+
T Consensus 27 i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~ 68 (405)
T 4b4t_J 27 IQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEP 68 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555555555555566666666666666666666655443
No 342
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=42.63 E-value=36 Score=26.97 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=30.4
Q ss_pred HHHHHhHHHHhhhcC--CCCCCCCChhhHHHHHHHHHHHH
Q 028999 59 ERLNDRFLDLSCILE--PGRPARTDKPAILDDAIRVLNQL 96 (200)
Q Consensus 59 ekiNe~F~~Lr~lLp--P~~~~K~dKasIL~dAI~YIk~L 96 (200)
-.|+=.|..|..++| |+.+.+.-|--||.+|.+++..|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 347789999999995 33445678999999999998876
No 343
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.55 E-value=1e+02 Score=22.91 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELK 104 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~ 104 (200)
-.++-+++++|..++++++
T Consensus 24 ~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 24 QVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777755
No 344
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=42.42 E-value=1.2e+02 Score=23.59 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028999 92 VLNQLRTESQELKE-TNEKLQEEIKSLK--------AEKNELREEKLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 92 YIk~L~~~v~~L~~-~~~~L~~ei~~L~--------~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 146 (200)
-.+.|+.+++.|+. +...+-..+.+.+ .+...-+++...+...+..|+..|....
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCe
Confidence 35667777777776 4444444444433 4666677788888899999999998863
No 345
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.37 E-value=97 Score=22.55 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 121 KNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 121 knELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
++.-.++...|+.+|++....++.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555444443
No 346
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.94 E-value=26 Score=30.52 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 106 TNEKLQEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 106 ~~~~L~~ei~~L~~eknELr~Ek~~L 131 (200)
+.+.|++++++|..|+.+|+.+...+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555554444333
No 347
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=41.84 E-value=60 Score=30.92 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.+.+.++++++.++.+.++++.....++.++.++
T Consensus 359 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~ 392 (695)
T 2j69_A 359 QDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINT 392 (695)
T ss_dssp SCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666665555555555444
No 348
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=41.71 E-value=49 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
.|+.|...+++|+++...|+..+.
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~ 52 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIK 52 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555444444444443
No 349
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=41.53 E-value=77 Score=24.22 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+-|...++.|+..+..+......++.++..++..++.+
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666777777777777777776666654
No 350
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=41.46 E-value=79 Score=23.33 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQ-ELKETNEKLQEEIKSLKA--EKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 96 L~~~v~-~L~~~~~~L~~ei~~L~~--eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
||..++ +|......|..++.+|.. .++.|..+-..|..+..+++.++.
T Consensus 38 LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 38 LRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 455555555554443333 444455555555555555555443
No 351
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=41.26 E-value=1e+02 Score=22.59 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHHHhHHHHhhhc
Q 028999 47 PGSKACREKLRRERLNDRFLDLSCIL 72 (200)
Q Consensus 47 ~~sH~~~ER~RRekiNe~F~~Lr~lL 72 (200)
-.+|-.-|++ |.+|...+.+|..-|
T Consensus 7 d~s~LPpeqR-kkkL~~Ki~el~~ei 31 (98)
T 2ke4_A 7 DFSHLPPEQQ-RKRLQQQLEERSREL 31 (98)
T ss_dssp CSSSSCHHHH-HHHHHHHHHHHHHHH
T ss_pred hhccCCHHHH-HHHHHHHHHHHHHHH
Confidence 3556666644 446666666666655
No 352
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=40.95 E-value=44 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+..++...|+..+..|+.++..
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555443
No 353
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=40.79 E-value=46 Score=20.41 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 114 IKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 114 i~~L~~eknELr~Ek~~Lk~e~e 136 (200)
-..|..+++.|+..+..|+.-++
T Consensus 9 E~kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 9 EQKLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444
No 354
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=40.70 E-value=98 Score=22.80 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=15.9
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHHH-H-HHHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAILD-D-AIRVLNQLRTESQELKE 105 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL~-d-AI~YIk~L~~~v~~L~~ 105 (200)
++|+.+..++.-.+- =...++.+. . .-+|=.++..+++++..
T Consensus 11 Rl~ELLD~ir~Efe~----~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~ 54 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQ----VSQEANTYRLQNQKDYDFKMNQQLAEMQQ 54 (92)
T ss_dssp ------CCTTTTTTT----THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 566666666655521 012222221 1 12565666666666554
No 355
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=40.53 E-value=1.5e+02 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCC
Q 028999 53 REKLRRERLNDRFLDLSCILEPGR 76 (200)
Q Consensus 53 ~ER~RRekiNe~F~~Lr~lLpP~~ 76 (200)
.|+...++--++=..|....||-+
T Consensus 31 L~~E~e~k~eEKkkiLaER~kPLn 54 (180)
T 1j1e_C 31 LEREAEERRGEKGRALSTRAQPLE 54 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344444444555556666665543
No 356
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.18 E-value=91 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
..-+.+.+.+.|++++.+|+..+.+.
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666665555443
No 357
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.97 E-value=1.4e+02 Score=23.73 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR-------EEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr-------~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.-++.|.....+....-+.+..+|+.|+..+.+.. .....|..++++|+..|..
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444555566677777776666542 2335888888888877654
No 358
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=39.41 E-value=1.1e+02 Score=22.18 Aligned_cols=54 Identities=13% Similarity=0.307 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKA-------EKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~-------eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
=|+.|+.++.+|+..-.+...++.+|-- ++-++-++......+.+.+.++|+.+
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777776655555554444433 23334444455556666677777665
No 359
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.29 E-value=1.4e+02 Score=23.35 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 102 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 102 ~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+|++....|-+.|..|..|+.+|......-.-||+.|..++..+
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 33444444444455555555555555555567888888888776
No 360
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=39.23 E-value=95 Score=29.22 Aligned_cols=47 Identities=26% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
-+|-.+|+.++.-|++....--..|+-|+.-+..++-+.++|...|.
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888777776544337777777777777777777775543
No 361
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.06 E-value=77 Score=23.06 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKL 110 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L 110 (200)
|..|+.+..+|+.+...+
T Consensus 10 i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 362
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=38.95 E-value=15 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKL 110 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L 110 (200)
.||.+|+.+++.|+.....|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888877777777655544
No 363
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=38.28 E-value=1.3e+02 Score=24.92 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
-+..+|+-|+.++.+++.|+.+ ..+++.+|.+..+.++.
T Consensus 27 ~~~~~l~~L~~iQ~e~~~l~~e---~~~ev~~lE~ky~~~~~ 65 (225)
T 2e50_A 27 EQQEAIEHIDEVQNEIDRLNEQ---ASEEILKVEQKYNKLRQ 65 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC
Confidence 5677888888888887777653 34555556555555444
No 364
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.26 E-value=7.7 Score=36.60 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=5.0
Q ss_pred CCcccccc
Q 028999 2 PLIEFNFC 9 (200)
Q Consensus 2 ~~~~~~~~ 9 (200)
|...|.|+
T Consensus 236 ~l~~f~w~ 243 (575)
T 2i1j_A 236 PKIGFPWS 243 (575)
T ss_dssp CSEEEEGG
T ss_pred cceEecHH
Confidence 44567785
No 365
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=38.24 E-value=58 Score=20.21 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=22.7
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHHHHHHH-HHHHHH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAILDDAIR-VLNQLR 97 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~-YIk~L~ 97 (200)
.+.+++..|.... ..++..|+.+||. ||.+++
T Consensus 13 ~l~~~l~~lA~~~------~rs~s~lir~Ai~~yl~~~e 45 (52)
T 2gpe_A 13 ATRERIKSAATRI------DRTPHWLIKQAIFSYLEQLE 45 (52)
T ss_dssp HHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------CcCHHHHHHHHHHHHHHHHH
Confidence 4566777777776 4688899998874 666543
No 366
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=37.66 E-value=1.3e+02 Score=22.72 Aligned_cols=80 Identities=14% Similarity=0.256 Sum_probs=40.7
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCChhhHH--HHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 028999 58 RERLNDRFLDLSCILEPGRPARTDKPAIL--DDAIR-VLNQLRTESQELKETNEKL---QEEIKSLKAEKNELREEKLIL 131 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP~~~~K~dKasIL--~dAI~-YIk~L~~~v~~L~~~~~~L---~~ei~~L~~eknELr~Ek~~L 131 (200)
-++|+..+-.+...+ -.+.++|- +.||. .-..|++....|...-.+. .++.+++..+..+|-..+..+
T Consensus 22 ~~ri~~aig~~d~ri------~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ 95 (114)
T 2xzr_A 22 IARIKKLIGAIDGRV------TRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHI 95 (114)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHH------HhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344455555444444 13444444 24444 4445555444444433332 334445555566666666667
Q ss_pred HHHHHHHHHHHH
Q 028999 132 KADKEKLEQQLK 143 (200)
Q Consensus 132 k~e~e~L~~qlk 143 (200)
..|+.+|..-+|
T Consensus 96 ene~ar~kkl~~ 107 (114)
T 2xzr_A 96 ENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 367
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=37.53 E-value=1.3e+02 Score=22.71 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 108 ~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
...+.+|++=..|..++.+....|-+.+-.|+.++.
T Consensus 65 nsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~a 100 (114)
T 2xzr_A 65 DSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIA 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555666666666666666553
No 368
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=36.92 E-value=1.1e+02 Score=21.60 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKA-------EKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~-------eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
|+.|+.++.+|+..-.+...++.+|-- ++-++-++......+.+.+.++|+.+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777655555555444432 23344444455556666667777654
No 369
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=36.81 E-value=7.2 Score=24.18 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSL 117 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L 117 (200)
.|..|+..++.|+.+.+.+++++..+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444333
No 370
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=36.30 E-value=1.6e+02 Score=23.84 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQ----EEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~----~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+|+.--.+|.+-|..-+.=++.....|- .+.+.+=..+.+.|.|....|.++.+|+--+.
T Consensus 40 AlIda~teY~kal~tLiSL~~~y~a~lgkl~~~eeD~~WqvIi~~R~E~~d~k~e~~rles~w~ 103 (162)
T 1g73_A 40 ALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWM 103 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556777777666655554433332 45666677788888888888888888875443
No 371
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=36.08 E-value=62 Score=22.62 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 115 KSLKAEKNELREEKLILKAD 134 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e 134 (200)
+.|..+..+|.+|+..|+.+
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 372
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.99 E-value=86 Score=20.14 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 028999 95 QLRTESQELKE 105 (200)
Q Consensus 95 ~L~~~v~~L~~ 105 (200)
.|+.+.+.|+.
T Consensus 4 alkselqalkk 14 (48)
T 1g6u_A 4 ALKSELQALKK 14 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555554
No 373
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.72 E-value=26 Score=31.92 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 103 LKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
|+.++..+..+...++.++.++++
T Consensus 44 l~~e~~r~~~e~~~~~~~~~~~~~ 67 (434)
T 4b4t_M 44 FRSELQRLSHENNVMLEKIKDNKE 67 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 374
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=34.53 E-value=1.7e+02 Score=23.12 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..|++-|..|+.++..++.. +..+|..++.. ...+...|+.+++.|+..|+.+
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~---~n~eI~~ik~~---~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQ---MNEAIDAAKAR---ASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788887777666653 34455555333 3445677888888888888875
No 375
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=34.33 E-value=1.4e+02 Score=22.12 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 117 LKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 117 L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
|+..++.+..++..+...+..++.
T Consensus 73 lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333333333
No 376
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=34.30 E-value=1.5e+02 Score=22.52 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028999 103 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPTHP 157 (200)
Q Consensus 103 L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~~~~p 157 (200)
|-...+.++..|..++.|.+-+......|+.++.-|+. +||.|-.|
T Consensus 48 l~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~---------ag~i~~AP 93 (113)
T 1aa0_A 48 LTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQE---------AGYIPEAP 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TCCCCCCC
T ss_pred cchhhhccccchhhhheeecccccchhhhhhhhHHHHh---------cCCCCCCC
Confidence 33445556666666677776666666666655555554 47766444
No 377
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.22 E-value=65 Score=23.97 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREEK---LILKADKEKLEQQLK 143 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek---~~Lk~e~e~L~~qlk 143 (200)
.|+.||++|..+++.|..=. -.|+..-..|+.+|.
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566666666666554322 233444444555554
No 378
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.12 E-value=97 Score=20.19 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 028999 130 ILKADKEKLEQQ 141 (200)
Q Consensus 130 ~Lk~e~e~L~~q 141 (200)
.|+.|+.+|+.+
T Consensus 35 nlrdeiarlene 46 (52)
T 3he5_B 35 NLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 379
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.60 E-value=69 Score=22.34 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
.+.+|+.++..-..+|.+|+.+++.+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 380
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.55 E-value=1.3e+02 Score=22.88 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 112 EEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+-..-|...+.+|.++...|+...+.|+..+..+
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666655544
No 381
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=33.40 E-value=1.8e+02 Score=23.09 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEI--KSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGY 152 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei--~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~ 152 (200)
=++.|+++..-..++.+-...+-... .+|+ .-+..-....+.++++|++-+..+...|++.
T Consensus 17 f~~~L~Diy~aE~q~~~aL~~~~~~a~~p~Lk---~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~ 79 (173)
T 2gyq_A 17 LLHGLRDIYYAEQQITKALPKMIEQATNRDLS---QGLTSHLEETQKQIERLDQVFKKLGQKPSGV 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCCSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34444444444444444333333222 2232 2244555667889999999999987776644
No 382
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=33.36 E-value=1.8e+02 Score=23.16 Aligned_cols=29 Identities=3% Similarity=0.020 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028999 124 LREEKLILKADKEKLEQQLKVMAMPTGGY 152 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~ 152 (200)
+.+.....+.+++||++-+..+...|++.
T Consensus 42 ~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~ 70 (166)
T 3hiu_A 42 IEQHVEETQQQSAGVQRCLELLNGSIPTA 70 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 44555677889999999999998887766
No 383
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=33.28 E-value=1.9e+02 Score=26.03 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELRE 126 (200)
Q Consensus 113 ei~~L~~eknELr~ 126 (200)
++..+..++.|+..
T Consensus 208 ~l~~l~~ql~ei~~ 221 (517)
T 4ad8_A 208 QIDLLAFQVQEISE 221 (517)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444443
No 384
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=32.67 E-value=2e+02 Score=23.47 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 112 EEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 112 ~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+.|..|..|+.+|......-.-||+.|..++..+
T Consensus 72 ~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 72 ARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 3333344444444444444445566666665554
No 385
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=32.57 E-value=2e+02 Score=27.40 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=13.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQELKETNEKL 110 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L~~~~~~L 110 (200)
.+.++++..+.-.+..+.....+.++...+
T Consensus 374 slqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 374 SARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444444444444444444444
No 386
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=32.53 E-value=2.1e+02 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028999 124 LREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..+.......+..|.++-+.+
T Consensus 162 le~~l~~~~~~i~~L~~~a~~l 183 (283)
T 3pe0_A 162 EKEQLNEYKGHLSGLAKRAKAV 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555544443
No 387
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=32.33 E-value=79 Score=19.36 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
.|+...+.|-.+.+.|+.....|+..++.|
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666667777777776666666655543
No 388
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=32.31 E-value=1.3e+02 Score=21.50 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQ 101 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~ 101 (200)
-..+|+.||+.++.+-+
T Consensus 9 ~~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 57899999999998754
No 389
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=32.21 E-value=1.6e+02 Score=23.43 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 028999 130 ILKADKEKLEQQL 142 (200)
Q Consensus 130 ~Lk~e~e~L~~ql 142 (200)
.|+.++..|+.++
T Consensus 91 ~l~~~~~~LeAE~ 103 (146)
T 2xnx_M 91 QLSSEKEQLTIEK 103 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 3333333344433
No 390
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=32.12 E-value=1.3e+02 Score=20.91 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 129 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~ 129 (200)
.|+..+.+++.+|+.........+.+.+...-||.....
T Consensus 10 ~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiL 48 (65)
T 3t97_B 10 TRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTL 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 577778888888888888888888888888888888764
No 391
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.97 E-value=1.7e+02 Score=22.18 Aligned_cols=16 Identities=13% Similarity=-0.267 Sum_probs=8.1
Q ss_pred CCCCCCchhHHHHHHH
Q 028999 43 SCSRPGSKACREKLRR 58 (200)
Q Consensus 43 ~~~r~~sH~~~ER~RR 58 (200)
++-|.-+-...++.+.
T Consensus 36 ~g~R~Y~~~dl~~l~~ 51 (142)
T 3gp4_A 36 SGVRKFGAEDLRWILF 51 (142)
T ss_dssp TSCBCBCHHHHHHHHH
T ss_pred CCCeeeCHHHHHHHHH
Confidence 3445555555555443
No 392
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.92 E-value=1e+02 Score=19.67 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~ 111 (200)
-.||++|+++..+|+.-.+.|.
T Consensus 9 knyiqeleernaelknlkehlk 30 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHH
Confidence 3455555555555554444433
No 393
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.84 E-value=1.7e+02 Score=24.33 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~~~L~~ei 114 (200)
.-|..|+.++++|+...-.++.+.
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEf 89 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADF 89 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444433
No 394
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=31.57 E-value=73 Score=24.91 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHH
Q 028999 52 CREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRV 92 (200)
Q Consensus 52 ~~ER~RRekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~Y 92 (200)
..-+.|.+.||++...|..++ ..+..-|..|.++
T Consensus 77 ~~i~~~~~~l~~~W~~L~~~~-------~~R~~~L~~a~~~ 110 (218)
T 3edu_A 77 ATIAEWKDGLNEMWADLLELI-------DTRMQLLAASYDL 110 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345667778888888887777 2355556655543
No 395
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=31.27 E-value=69 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQEEIKSLKAE 120 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~~ei~~L~~e 120 (200)
.+++.+++++.++..+|..+|+.+...
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il~~ 31 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAILEL 31 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444333
No 396
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=31.24 E-value=58 Score=18.57 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQ 101 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~ 101 (200)
+|-|-+|-.|+.+|...+.
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4677888999999887553
No 397
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=31.00 E-value=1.4e+02 Score=21.10 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 136 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e 136 (200)
|..-|+++-.+++.|......+-..+..|.++--.|.++...++..++
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455677777777777776666666666665555555444444444333
No 398
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.49 E-value=87 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEE 113 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~e 113 (200)
++.-+++-|..|+.++..|+++|+.|..+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666666666666666544
No 399
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=30.28 E-value=1.1e+02 Score=27.24 Aligned_cols=38 Identities=16% Similarity=0.486 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 028999 96 LRTESQELKETNEKLQEEI-------KSLKAEKNELREEKLILKA 133 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei-------~~L~~eknELr~Ek~~Lk~ 133 (200)
|+..++++.....+|++++ +++..+.|-|+-+...|..
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 4444444444444444444 4455555555555444444
No 400
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.22 E-value=1.8e+02 Score=22.06 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 94 NQLRTESQELKETNEKLQ----EEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 94 k~L~~~v~~L~~~~~~L~----~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
.+|+.++.++......|+ +...+-+.++.+|.+......+.+..|
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~L 64 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEEL 64 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333332 233333444444444443333333333
No 401
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.20 E-value=53 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 123 ELREEKLILKADKEKLEQ 140 (200)
Q Consensus 123 ELr~Ek~~Lk~e~e~L~~ 140 (200)
.|+.++..|+.+++.|++
T Consensus 61 ~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555555555544
No 402
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.11 E-value=1.2e+02 Score=25.76 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
++=+.|..|...++++....+..+..++.++..+.||
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555554444444433344444444333343
No 403
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.97 E-value=2.5e+02 Score=23.63 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 135 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~ 135 (200)
.|..+...+++.+..|..++..++.|.|-++......+.+.
T Consensus 168 yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 168 FLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333333333
No 404
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=29.71 E-value=1.6e+02 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 028999 124 LREEKLILKADKEKLEQQLKVMAMPTGG 151 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk~~~~~p~g 151 (200)
+.+.....+.++++|++-+..+...|+|
T Consensus 45 ~e~Hl~eT~~qi~rLe~vf~~lg~~~~~ 72 (171)
T 3ogh_B 45 IEQHLSETKNQIVQLETILDRNDISRSV 72 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 4455567788999999999988766663
No 405
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=29.31 E-value=63 Score=24.13 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQQL 142 (200)
Q Consensus 129 ~~Lk~e~e~L~~ql 142 (200)
.++..|++.|..||
T Consensus 79 Ek~~~EKe~L~~ql 92 (96)
T 3fx0_A 79 EKLAEKKELLQEQL 92 (96)
T ss_dssp HHTSSTTSCC----
T ss_pred HHHHhhHHHHHHHH
Confidence 34444555555444
No 406
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=29.30 E-value=52 Score=24.43 Aligned_cols=17 Identities=35% Similarity=0.284 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 91 RVLNQLRTESQELKETN 107 (200)
Q Consensus 91 ~YIk~L~~~v~~L~~~~ 107 (200)
.-.++|+.++.+|..++
T Consensus 30 ~~~~~lk~E~~~lk~E~ 46 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFN 46 (94)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666555544
No 407
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=29.25 E-value=1.9e+02 Score=22.76 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCCCC
Q 028999 124 LREEKLILKADKEKLEQQLKV-MAMPTGGY 152 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk~-~~~~p~g~ 152 (200)
+..-....+.++++|++-++. +...|++.
T Consensus 44 l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~ 73 (166)
T 2gs4_A 44 FHAHLEETHGQIERIDQVVESESNLKIKRM 73 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 444556678899999999998 87776654
No 408
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=29.18 E-value=78 Score=22.02 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 115 KSLKAEKNELREEKLILKADKEK 137 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e~e~ 137 (200)
+++-+|.|||+.....++.|...
T Consensus 6 r~iLqERNELKa~vf~lqeEL~y 28 (65)
T 1yhn_B 6 EQILQERNELKAKVFLLKEELAY 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455544444444444433
No 409
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=29.12 E-value=1.6e+02 Score=21.09 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
+-++.+.+|+..--..+++.+.|+.++...+.+.-.+.+
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~e 65 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQ 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344556666665555555555555544333333333333
No 410
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=28.86 E-value=44 Score=24.99 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHH
Q 028999 124 LREEKLILKADKE 136 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e 136 (200)
+..|+..|..+++
T Consensus 81 ~~~EKe~L~~ql~ 93 (96)
T 3fx0_A 81 LAEKKELLQEQLE 93 (96)
T ss_dssp TSSTTSCC-----
T ss_pred HHhhHHHHHHHHH
Confidence 3334444444433
No 411
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=28.44 E-value=3.1e+02 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 028999 122 NELREEKLILKADKEKLEQQLKVMAMPTGGYMP 154 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~~ 154 (200)
-++.-+...+-.+++.|++|+..++.|..++.|
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ierLs~pgg~~dp 111 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIERLSQPGGSEDQ 111 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 355556666777788888999888887665544
No 412
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.41 E-value=79 Score=23.83 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=0.4
Q ss_pred HHHHHHHHHH
Q 028999 96 LRTESQELKE 105 (200)
Q Consensus 96 L~~~v~~L~~ 105 (200)
|..+++.|+.
T Consensus 4 l~~~~~~l~~ 13 (182)
T 3kqg_A 4 LNAQIPELKS 13 (182)
T ss_dssp ---------C
T ss_pred hhhhHHHHHH
Confidence 3334444443
No 413
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.40 E-value=1.6e+02 Score=22.84 Aligned_cols=14 Identities=50% Similarity=0.484 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 028999 130 ILKADKEKLEQQLK 143 (200)
Q Consensus 130 ~Lk~e~e~L~~qlk 143 (200)
.-++|.++.+..|+
T Consensus 107 ~KkAEleKtqa~Ld 120 (125)
T 2pms_C 107 AKKAELEKTEADLK 120 (125)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 414
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.39 E-value=2.3e+02 Score=22.62 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 100 SQELKETNEKLQEEIKSL 117 (200)
Q Consensus 100 v~~L~~~~~~L~~ei~~L 117 (200)
|.+|++.+..-+.++..|
T Consensus 48 VDQlqKRn~~HQKEi~~L 65 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKL 65 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 333333333333333333
No 415
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.33 E-value=1.2e+02 Score=19.50 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 100 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 140 (200)
Q Consensus 100 v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ 140 (200)
+.+|+.+...|+.+.+.|+...---.+=.+-|..||..|..
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrk 45 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443222222223444455554443
No 416
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.15 E-value=1.7e+02 Score=22.65 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 028999 116 SLKAEKNELREEKL 129 (200)
Q Consensus 116 ~L~~eknELr~Ek~ 129 (200)
.++.+++.+..+..
T Consensus 78 ~~k~~le~l~~~i~ 91 (180)
T 1s94_A 78 QMKEELEELMTDIK 91 (180)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544443
No 417
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=28.06 E-value=2.1e+02 Score=25.76 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 125 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr 125 (200)
+.++|+.|+.||.+..+|+.+. .+++.+|+++.+.++
T Consensus 51 v~~rI~aLk~lQ~E~~~le~ef---~eEv~~LE~KY~kl~ 87 (359)
T 3fs3_A 51 QKETLKKLKLYQKEYYDYESKF---EYELFLLRQKYHDLY 87 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3467788888888887777643 334444544444433
No 418
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=28.05 E-value=2.5e+02 Score=23.09 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQ----EEIKSLKAEKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~----~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
+|+.--.+|.+-|..-+.-++.....|- .+.+.+=+.+.+.|.|....|.++.+|+--+.
T Consensus 40 AlIda~teY~kal~tLiSL~k~y~a~lgkln~~eeD~vWqvIi~~R~E~~~kk~e~~rlEs~w~ 103 (184)
T 1few_A 40 ALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWM 103 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556777777666655554433332 45666777788888888888888888875443
No 419
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.90 E-value=1.2e+02 Score=19.38 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 103 LKETNEKLQEEIKSL 117 (200)
Q Consensus 103 L~~~~~~L~~ei~~L 117 (200)
...+.+..+++|.+|
T Consensus 14 VdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 14 VDREITMVEQQISKL 28 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 420
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=27.88 E-value=1.5e+02 Score=20.51 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHH-hcCCCCCCCCC
Q 028999 96 LRTESQELKETNEKLQEEIKSLKAEKN----ELREEKLILK---ADKEKLEQQLKV-MAMPTGGYMPT 155 (200)
Q Consensus 96 L~~~v~~L~~~~~~L~~ei~~L~~ekn----ELr~Ek~~Lk---~e~e~L~~qlk~-~~~~p~g~~~~ 155 (200)
++...+.|+.+++.+...+..|..|.+ .||+-....+ .+...|...++. +.+.-.||.+|
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~~~f~~p 74 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIP 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHHHCBTTBCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcCCCCC
Confidence 344555666666666666666666555 4554222211 122234444444 34555667543
No 421
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.86 E-value=3.9e+02 Score=25.18 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQQ 141 (200)
Q Consensus 129 ~~Lk~e~e~L~~q 141 (200)
..|+.||+.|+.+
T Consensus 570 ~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 570 RIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 422
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=27.77 E-value=2.3e+02 Score=22.62 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=36.5
Q ss_pred HHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-HH
Q 028999 60 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEI--------KSLKAEKNELREEK-LI 130 (200)
Q Consensus 60 kiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei--------~~L~~eknELr~Ek-~~ 130 (200)
.|+..+.+|+.-|.|-. ..=..-|..++-.|-..|+..++.|+.......+++ ++++..+.=+-++. ..
T Consensus 70 ~l~~~~~~l~~qL~P~~--~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~k 147 (191)
T 1nfn_A 70 ELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKR 147 (191)
T ss_dssp HHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34455666776775532 122334555666666666666666665443322221 23333333332332 34
Q ss_pred HHHHHHHHHHHHH
Q 028999 131 LKADKEKLEQQLK 143 (200)
Q Consensus 131 Lk~e~e~L~~qlk 143 (200)
+....+.|+.+|.
T Consensus 148 l~~~~eeLr~~l~ 160 (191)
T 1nfn_A 148 LLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 5555666665554
No 423
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=27.75 E-value=1.1e+02 Score=18.98 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 119 AEKNELREEKLILKADKEKL 138 (200)
Q Consensus 119 ~eknELr~Ek~~Lk~e~e~L 138 (200)
.++.+-.+|.++||.+.+.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 33444444455555555444
No 424
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.70 E-value=1.1e+02 Score=19.41 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 122 NELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 122 nELr~Ek~~Lk~e~e~L~~qlk 143 (200)
++|.++...|...++.|..++.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555544
No 425
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=27.60 E-value=66 Score=22.82 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQE 102 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~ 102 (200)
.-+.+|+.||+.++.+-+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHHHhc
Confidence 4578999999999987544
No 426
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=27.60 E-value=78 Score=24.62 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 117 LKAEKNELREEKLILK 132 (200)
Q Consensus 117 L~~eknELr~Ek~~Lk 132 (200)
|.-.+++|..+.+.|+
T Consensus 66 L~~ki~eL~~kvA~le 81 (125)
T 2pms_C 66 LSDKIDELDAEIAKLE 81 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333333333333333
No 427
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=27.52 E-value=85 Score=21.85 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 128 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek 128 (200)
|.+|+.+++.+..+.-.|-.+--.+-.+.-+++.+.
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~ 40 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 556666776666666666655555555555554443
No 428
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=27.45 E-value=2.3e+02 Score=26.28 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=30.6
Q ss_pred hHHHHHHHH---HHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 51 ACREKLRRE---RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQE 112 (200)
Q Consensus 51 ~~~ER~RRe---kiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ 112 (200)
..-|..||. .|.+.+.-|.+-+ -. ..+...-++....+.+++.++.....|....+.|..
T Consensus 48 ~~~e~~~~~~~~~~~e~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 110 (526)
T 2de0_X 48 KDHEILRRRIENGAKELWFFLQSEL-KK-LKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQ 110 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH-HH-hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777763 4445555444444 10 012234445555666666666666655555555443
No 429
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=27.19 E-value=2.7e+02 Score=23.85 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNEL 124 (200)
Q Consensus 110 L~~ei~~L~~eknEL 124 (200)
...||+++...+..|
T Consensus 175 a~sEI~EID~KI~~L 189 (242)
T 3uux_B 175 TLSEIRDIEVEVENL 189 (242)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 430
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=27.15 E-value=2.5e+02 Score=22.78 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 110 LQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 110 L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
++..+..++..++++-++...|..+.....+++
T Consensus 84 l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~ 116 (192)
T 2p22_C 84 NFEDLHEQKDKVQALLENARILESKYVASWQDY 116 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444544444444444
No 431
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=27.12 E-value=1.1e+02 Score=30.29 Aligned_cols=47 Identities=6% Similarity=-0.016 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Q 028999 99 ESQELKETNEKLQEEIKSLKAEKN--------------ELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 99 ~v~~L~~~~~~L~~ei~~L~~ekn--------------ELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
+..+|.++...++.++..+...++ +-++....++.++++|+++|..+
T Consensus 801 ~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 801 WRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555444322 23344456677777777777654
No 432
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=27.06 E-value=1.5e+02 Score=20.15 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELR--EEKLILKADKEKLEQQLK 143 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr--~Ek~~Lk~e~e~L~~qlk 143 (200)
.|...-.+|+..+.||- -|......+..+|+.+++
T Consensus 29 elkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 29 ELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444444554444442 133334445555555554
No 433
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=27.04 E-value=1.4e+02 Score=19.95 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 92 VLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 124 (200)
Q Consensus 92 YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknEL 124 (200)
.|.+|+..+..++.-...+..+++.+..+...+
T Consensus 7 ~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 7 LLAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555544444444444444444444
No 434
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.38 E-value=2e+02 Score=21.44 Aligned_cols=9 Identities=33% Similarity=0.320 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 028999 124 LREEKLILK 132 (200)
Q Consensus 124 Lr~Ek~~Lk 132 (200)
|+.|...|+
T Consensus 72 lqgEI~~Ln 80 (99)
T 3ni0_A 72 LENEVTKLN 80 (99)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 435
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.18 E-value=1.2e+02 Score=24.28 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
++.+..|+.+...+....++-.+.+++|..+.
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~ 35 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQ 35 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444444333
No 436
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.06 E-value=1.7e+02 Score=20.45 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 129 LILKADKEKLEQQLK 143 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk 143 (200)
..|..-+..+.+.|.
T Consensus 70 ~~l~~~L~~i~~~l~ 84 (103)
T 4i0x_B 70 RELVEGLSQMEEAAR 84 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 437
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.03 E-value=2.6e+02 Score=22.49 Aligned_cols=30 Identities=7% Similarity=0.194 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEI 114 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei 114 (200)
++..+|.-+..-+..++.|+....+++.++
T Consensus 63 ~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 63 LYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444544444444443
No 438
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=25.77 E-value=2.5e+02 Score=22.67 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 028999 81 DKPAILDDAIRVLNQLRTESQEL-KETNEKLQEEIKSLKAEKNELREEK-LILKADKEKLE 139 (200)
Q Consensus 81 dKasIL~dAI~YIk~L~~~v~~L-~~~~~~L~~ei~~L~~eknELr~Ek-~~Lk~e~e~L~ 139 (200)
...++...-.-|..+++..+..- +.-...|..++.+++..+.-..+|. ..+....+.|+
T Consensus 55 ~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr 115 (216)
T 2lem_A 55 TVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYR 115 (216)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHH
Confidence 34445555555666666555432 2233445555666665554443333 23344444444
No 439
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=25.72 E-value=2.3e+02 Score=21.77 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSL--------KAEKNELREEKLILKADKEKLEQQLKVMAM 147 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L--------~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~ 147 (200)
+..|+.+++..........+.+++- ..+....+++...+...+..|+..|....+
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~v 74 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVI 74 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4556666555333333333333332 234666778888889999999999988643
No 440
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=25.32 E-value=1.4e+02 Score=21.33 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEK 121 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek 121 (200)
.+|.+-+++|..|=.+++..-.....|.....++..++
T Consensus 4 ~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i 41 (104)
T 4afl_A 4 MYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEI 41 (104)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444444444443333333
No 441
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=25.31 E-value=1.3e+02 Score=21.04 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNE 123 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknE 123 (200)
.+.|+..+++|..|+..
T Consensus 48 V~tLe~NLrEL~~ei~~ 64 (69)
T 1z0k_B 48 VRTLQENLRQLQDEYDQ 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 442
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.23 E-value=75 Score=28.88 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 028999 128 KLILKADKEKLEQQLKVMA 146 (200)
Q Consensus 128 k~~Lk~e~e~L~~qlk~~~ 146 (200)
...|+.+.++++.+++.+.
T Consensus 81 ~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 81 IRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3334444444444455443
No 443
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=24.94 E-value=1.5e+02 Score=21.91 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q 028999 85 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEK-------------NELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 85 IL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ek-------------nELr~Ek~~Lk~e~e~L~~qlk 143 (200)
-+.+|+.||+.++.+-+.--....+..+-++..+.+. .+.-++...|-..-..|-..+.
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn 77 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFG 77 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 4679999999999875442223333333333333332 3556666666555555555554
No 444
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=24.86 E-value=1.1e+02 Score=22.02 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q 028999 129 LILKADKEKLE 139 (200)
Q Consensus 129 ~~Lk~e~e~L~ 139 (200)
+.|+.+.|++.
T Consensus 43 QsLQvqLE~IR 53 (79)
T 1tu3_F 43 QTLQVQLERIR 53 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35666666664
No 445
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=24.85 E-value=2.9e+02 Score=22.64 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 111 QEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
-..|..|..|+..|......-.-||+.|.+++..+
T Consensus 68 h~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDL 102 (182)
T 1ytz_I 68 HAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDL 102 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333444455555555555555666666666555
No 446
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=24.35 E-value=1.3e+02 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 120 EKNELREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 120 eknELr~Ek~~Lk~e~e~L~~qlk 143 (200)
.+..|+.+...|+.+|.+|+..+.
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~ 52 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIK 52 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544443
No 447
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.32 E-value=1.4e+02 Score=23.37 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028999 95 QLRTESQELKETNEKLQEEIK 115 (200)
Q Consensus 95 ~L~~~v~~L~~~~~~L~~ei~ 115 (200)
.|+.++.++......+..++.
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~ 24 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLA 24 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333
No 448
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.26 E-value=1.3e+02 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028999 111 QEEIKSLKAEKNELREEKLILK 132 (200)
Q Consensus 111 ~~ei~~L~~eknELr~Ek~~Lk 132 (200)
-+|+.-|..-+.||++|...++
T Consensus 45 ~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 45 MDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777766655543
No 449
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=24.23 E-value=81 Score=27.43 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 107 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 107 ~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
...|.++.++.+.+++++.++...+..=+..||+|...
T Consensus 231 ~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~ 268 (319)
T 2p90_A 231 LLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDS 268 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 34455555555556666666555555555666666655
No 450
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=24.16 E-value=2.1e+02 Score=20.86 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 98 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 98 ~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
+-+++|.....+.-.+-.+|+.--..|+.|+..|-.-..+|-.|+
T Consensus 26 e~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqi 70 (97)
T 1no4_A 26 EALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQI 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHh
No 451
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=24.15 E-value=58 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 83 PAILDDAIRVLNQLRTESQELKETNEKLQ 111 (200)
Q Consensus 83 asIL~dAI~YIk~L~~~v~~L~~~~~~L~ 111 (200)
++|++.+.++..+|+...++|+..+..+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 30 (184)
T 3p01_A 2 NAVVQRAAETYDLLKQRTEELRRANAQMS 30 (184)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999888766543
No 452
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.08 E-value=1.7e+02 Score=27.23 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=7.3
Q ss_pred HHHhHHHHhhhc
Q 028999 61 LNDRFLDLSCIL 72 (200)
Q Consensus 61 iNe~F~~Lr~lL 72 (200)
++.-+.+|..+|
T Consensus 93 V~~dl~~Le~~l 104 (461)
T 3ghg_B 93 IRNSVDELNNNV 104 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 455566666666
No 453
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=24.03 E-value=2.2e+02 Score=20.98 Aligned_cols=63 Identities=22% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 76 RPARTDKPAILDDAIRVLNQLRTESQELKETNEK---LQEEIKSLKAEKNELREEKLILKADKEKL 138 (200)
Q Consensus 76 ~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~---L~~ei~~L~~eknELr~Ek~~Lk~e~e~L 138 (200)
+|.-.+.+.-|.+|-.+=.++-.++.+--.+... -+.+|++|..|+|.|-.|+......|-.|
T Consensus 13 RP~~~~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 13 RPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp CCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 454
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.81 E-value=1.8e+02 Score=19.86 Aligned_cols=10 Identities=10% Similarity=-0.080 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 028999 91 RVLNQLRTES 100 (200)
Q Consensus 91 ~YIk~L~~~v 100 (200)
.||..|+.++
T Consensus 48 ~~~~~Le~rl 57 (96)
T 1pyi_A 48 SYVFFLEDRL 57 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3554444433
No 455
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=23.71 E-value=23 Score=34.28 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 90 IRVLNQLRTESQELKETNEK 109 (200)
Q Consensus 90 I~YIk~L~~~v~~L~~~~~~ 109 (200)
|+++++...++++|.+....
T Consensus 549 Iq~~re~~~kv~~L~~~~~~ 568 (624)
T 3lvg_A 549 IQVMKEYLTKVDKLDASESL 568 (624)
T ss_dssp TTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665544
No 456
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=23.70 E-value=1.9e+02 Score=26.17 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 028999 130 ILKADKEKLEQQLKVM 145 (200)
Q Consensus 130 ~Lk~e~e~L~~qlk~~ 145 (200)
.++.|++.|+.++..+
T Consensus 91 ~a~~e~~~l~~~l~~l 106 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEY 106 (371)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666666655
No 457
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.68 E-value=42 Score=26.45 Aligned_cols=40 Identities=35% Similarity=0.521 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEK----NEL----REEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~ek----nEL----r~Ek~~Lk~e~e~L~~qlk~ 144 (200)
..+..+..++.+|++.+ |++ |.+...++...+.|+.|++.
T Consensus 67 ~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 67 EEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555432 221 33344455555555555543
No 458
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=23.67 E-value=1.1e+02 Score=21.67 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
|.+|+.+++++..+.-.|-.+--.+-.++-+++.+
T Consensus 14 L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 14 IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776666666655555555555443
No 459
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=23.65 E-value=2.5e+02 Score=23.05 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHhhhcCC
Q 028999 58 RERLNDRFLDLSCILEP 74 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP 74 (200)
|++++....+|+.-|-|
T Consensus 127 ~~~~~~~~eel~~~L~p 143 (243)
T 2a01_A 127 QEGARQKLHELQEKLSP 143 (243)
T ss_dssp HHHHHHHHHHHCCSCCS
T ss_pred HHHHHhhHHHHHHHHHh
Confidence 67788899999998855
No 460
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=23.57 E-value=2.9e+02 Score=22.32 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028999 109 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 145 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 145 (200)
.+..-+++|..++..+|.+....+.+.+++.++|++.
T Consensus 221 ~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~ 257 (265)
T 2q12_A 221 QLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVA 257 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455555555555555555556666666666644
No 461
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=22.66 E-value=3.6e+02 Score=25.10 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCC
Q 028999 88 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK-ADKEKLEQQLKVMAMPTG 150 (200)
Q Consensus 88 dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk-~e~e~L~~qlk~~~~~p~ 150 (200)
.+|+.=.+|..+.++.....+.-++++.+....+.+-++-...|+ .++ .++|++..||.
T Consensus 29 ~~~~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k~di----~Elks~~~PP~ 88 (536)
T 3err_A 29 ALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHL----VEVRSMANPPA 88 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH----HHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH----HHHHhcCCCcH
Confidence 333444455555555555555555555555555555555444442 222 34666655544
No 462
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=22.58 E-value=30 Score=31.30 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=24.7
Q ss_pred HHHHhHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHH
Q 028999 60 RLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSL-KAE-KNELREEKLILKADKE 136 (200)
Q Consensus 60 kiNe~F~~Lr~lL-pP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L-~~e-knELr~Ek~~Lk~e~e 136 (200)
.+.++|.+|...+ .|+.....+++.-|.+-...|+.+-....+++...+.+.+-..-+ -.+ +.++.+|...|+.+++
T Consensus 11 ~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~eD~e~~~~a~~e~~~l~~~~~ 90 (360)
T 2b3t_B 11 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSE 90 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred HHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4566777776655 233323345554444444444433333333332222221111111 111 1234556667777777
Q ss_pred HHHHHHHHh
Q 028999 137 KLEQQLKVM 145 (200)
Q Consensus 137 ~L~~qlk~~ 145 (200)
.|+.+|+.+
T Consensus 91 ~le~~l~~~ 99 (360)
T 2b3t_B 91 QLEQQLQVL 99 (360)
T ss_dssp ----CCCCC
T ss_pred HHHHHHHhh
Confidence 777766544
No 463
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.56 E-value=1.8e+02 Score=28.54 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELRE-------EKLILKADKEKLEQQL 142 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~-------Ek~~Lk~e~e~L~~ql 142 (200)
+|++|.++|..++.+|++ -....+.|+..+..++
T Consensus 406 kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 406 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444433 2334445555554444
No 464
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=22.55 E-value=3.2e+02 Score=22.39 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHhhhcCC
Q 028999 58 RERLNDRFLDLSCILEP 74 (200)
Q Consensus 58 RekiNe~F~~Lr~lLpP 74 (200)
|.+++..+.+|+.-|-|
T Consensus 105 ~~~~~~~~eelr~~L~P 121 (243)
T 2a01_A 105 QKKWQEEMELYRQKVEP 121 (243)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 56778888888887744
No 465
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=22.54 E-value=48 Score=24.66 Aligned_cols=15 Identities=27% Similarity=0.098 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 108 EKLQEEIKSLKAEKN 122 (200)
Q Consensus 108 ~~L~~ei~~L~~ekn 122 (200)
.+|+.|+.+|+.|.+
T Consensus 33 ~~lk~E~~~lk~E~~ 47 (94)
T 3vlc_E 33 LAKVKERHELKEFNN 47 (94)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444544444
No 466
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.41 E-value=1.4e+02 Score=28.32 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 115 KSLKAEKNELREEKLILKADKEKLEQQL 142 (200)
Q Consensus 115 ~~L~~eknELr~Ek~~Lk~e~e~L~~ql 142 (200)
.+++.++..++.+...++....+++..+
T Consensus 362 ~~~~~~l~~~~~~~~~l~~~~~~~~~~l 389 (695)
T 2j69_A 362 NELKKRIDSVEPEFNKLTGIRDEFQKEI 389 (695)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 467
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=22.37 E-value=1.9e+02 Score=19.59 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028999 124 LREEKLILKADKEKLEQQLK 143 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L~~qlk 143 (200)
++.....+..-++.+..+|+
T Consensus 60 ~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 60 LSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 468
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=22.35 E-value=1.4e+02 Score=21.25 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~ 126 (200)
|.+||.+++.+..+.-.|-.+.-.+..+.-+++.
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~ 52 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKK 52 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666776666666666555555555555544443
No 469
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.25 E-value=2.6e+02 Score=25.07 Aligned_cols=11 Identities=18% Similarity=0.057 Sum_probs=8.0
Q ss_pred CCCcccccCCC
Q 028999 175 LMPMWQYLPPS 185 (200)
Q Consensus 175 ~~~mwq~~pp~ 185 (200)
|+-=||-+||+
T Consensus 176 GvHRvqRvp~~ 186 (354)
T 3d5a_X 176 GVHRVQRVPVT 186 (354)
T ss_dssp SEEEEEECCSS
T ss_pred CeeEEEecCCc
Confidence 56667778877
No 470
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.22 E-value=77 Score=25.54 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 109 KLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 109 ~L~~ei~~L~~eknELr~E 127 (200)
.+..++.+|+..+....+|
T Consensus 103 ~l~kdlEelr~kL~P~~eE 121 (191)
T 1nfn_A 103 RLGADMEDVCGRLVQYRGE 121 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 3444445555544444443
No 471
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.82 E-value=54 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNEKLQEEIK 115 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~~L~~ei~ 115 (200)
+.+|..++++|+-+|..|..+++
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777776666554
No 472
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=21.72 E-value=2.2e+02 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028999 101 QELKETNEKLQEEIKSLKA 119 (200)
Q Consensus 101 ~~L~~~~~~L~~ei~~L~~ 119 (200)
++|...+.+.+.+|+.|..
T Consensus 33 ~~~~~~~~~~EKTIDDLED 51 (77)
T 3mtu_E 33 QQLRVNYGSFVSEYNDLEE 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 473
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=21.71 E-value=2e+02 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 89 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 127 (200)
Q Consensus 89 AI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~E 127 (200)
+.+-|.+||.+++.+..+.-.|-.+...+-.++-+++.+
T Consensus 10 ~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 10 ILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477777777777777766666665555555555543
No 474
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.67 E-value=2.3e+02 Score=20.47 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=5.9
Q ss_pred HHHhHHHHhhhc
Q 028999 61 LNDRFLDLSCIL 72 (200)
Q Consensus 61 iNe~F~~Lr~lL 72 (200)
+-..+..++..|
T Consensus 23 aEsliy~~e~~L 34 (120)
T 2p32_A 23 LESYAFNLKQTI 34 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333445555555
No 475
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=21.52 E-value=1.8e+02 Score=19.16 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028999 113 EIKSLKAEKNELREEKLI 130 (200)
Q Consensus 113 ei~~L~~eknELr~Ek~~ 130 (200)
++.-|..-++||++|...
T Consensus 29 EV~~Le~NLrEL~~ei~~ 46 (51)
T 1yzm_A 29 EVRTLQENLRQLQDEYDQ 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 476
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.17 E-value=2e+02 Score=19.41 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 028999 129 LILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 129 ~~Lk~e~e~L~~qlk~~~~~ 148 (200)
..+-+|+++|=.++......
T Consensus 32 I~~SQeLD~LIn~Y~k~~~~ 51 (62)
T 2bzb_A 32 LLFSRDLDKLINKFMNVKDK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45556666666666554333
No 477
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=21.09 E-value=3.9e+02 Score=22.83 Aligned_cols=16 Identities=0% Similarity=0.187 Sum_probs=7.8
Q ss_pred HHHHHHHhHHHHhhhc
Q 028999 57 RRERLNDRFLDLSCIL 72 (200)
Q Consensus 57 RRekiNe~F~~Lr~lL 72 (200)
+|..|++.+..|..++
T Consensus 102 k~~Hl~eq~~~Lk~l~ 117 (251)
T 1jad_A 102 KEQHATEQTAKITELA 117 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 478
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=20.70 E-value=93 Score=27.76 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 028999 124 LREEKLILKADKEKL 138 (200)
Q Consensus 124 Lr~Ek~~Lk~e~e~L 138 (200)
|+++...|+.+++.+
T Consensus 425 l~~~~~~~~~~~~~~ 439 (468)
T 3pxg_A 425 LRDTEQRLREQVEDT 439 (468)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 479
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.66 E-value=1.9e+02 Score=19.01 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 93 LNQLRTESQELKETNE 108 (200)
Q Consensus 93 Ik~L~~~v~~L~~~~~ 108 (200)
|..|+.++++++.+.+
T Consensus 9 i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 9 VEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 480
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.65 E-value=1.9e+02 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHh
Q 028999 131 LKADKEKLEQQLKVM 145 (200)
Q Consensus 131 Lk~e~e~L~~qlk~~ 145 (200)
+++.++-+.-+++++
T Consensus 76 ~~a~l~~v~~~lqt~ 90 (179)
T 2gd5_A 76 SKAHMNSVLMGMKNQ 90 (179)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 481
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.64 E-value=2.6e+02 Score=20.58 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 028999 105 ETNEKLQEEIKSLKAEKN------------ELREEKLILKADKEKLEQQLKV 144 (200)
Q Consensus 105 ~~~~~L~~ei~~L~~ekn------------ELr~Ek~~Lk~e~e~L~~qlk~ 144 (200)
.+..+|+.|+.+|+.|.+ .|+....+|..|++.+..+|.+
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544 2444444555555555544443
No 482
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.51 E-value=76 Score=21.09 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028999 126 EEKLILKADKEKLEQQ 141 (200)
Q Consensus 126 ~Ek~~Lk~e~e~L~~q 141 (200)
+|...|..|||+|+.|
T Consensus 6 EEILRLErEIE~Lqrq 21 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRM 21 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 483
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.26 E-value=2.5e+02 Score=20.29 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028999 86 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 148 (200)
Q Consensus 86 L~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 148 (200)
|.+....|++--...=++++=.+.|..-....+...+....|.......++.|.++|..+++.
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a~ 85 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 484
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=20.25 E-value=2.6e+02 Score=23.30 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 028999 61 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN----------ELREEKLI 130 (200)
Q Consensus 61 iNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~ekn----------ELr~Ek~~ 130 (200)
|+|++.+|+..- ...-.+-.+|..+.-.++...-.+++.+......+...+.+|+.-.+ +++++...
T Consensus 1 m~drl~~~~~~~---~~~~~~~~~~~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~ 77 (267)
T 1dn1_B 1 MKDRTQELRTAK---DSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEE 77 (267)
T ss_dssp -----------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHH
T ss_pred CCchHHHHhccc---CCCCccceecccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 028999 131 LKADKEKLEQQLKV 144 (200)
Q Consensus 131 Lk~e~e~L~~qlk~ 144 (200)
+-.++.++-..++.
T Consensus 78 l~~~i~~~~~~i~~ 91 (267)
T 1dn1_B 78 LMSDIKKTANKVRS 91 (267)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 485
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=20.23 E-value=3.2e+02 Score=21.45 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-H
Q 028999 59 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEI--------KSLKAEKNELREEK-L 129 (200)
Q Consensus 59 ekiNe~F~~Lr~lLpP~~~~K~dKasIL~dAI~YIk~L~~~v~~L~~~~~~L~~ei--------~~L~~eknELr~Ek-~ 129 (200)
+.++..+..|+.-|.|-. ..=...+..++-..=..|...+++++.......+++ ++++..+..+-++. .
T Consensus 69 d~l~~~~~~l~~~L~P~t--~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~ 146 (165)
T 1gs9_A 69 KELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 146 (165)
T ss_dssp HHHHHHHHHHTTSCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 028999 130 ILKADKEKLEQQL 142 (200)
Q Consensus 130 ~Lk~e~e~L~~ql 142 (200)
.+..+.+.|+.+|
T Consensus 147 ~~~~~~eeLr~kL 159 (165)
T 1gs9_A 147 RLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHh
No 486
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=20.07 E-value=2.8e+02 Score=22.06 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 028999 84 AILDDAIRVLNQLRTESQELKE-----TNEKLQEEIKSLKAEKNELRE 126 (200)
Q Consensus 84 sIL~dAI~YIk~L~~~v~~L~~-----~~~~L~~ei~~L~~eknELr~ 126 (200)
....++-.||+.|+..+.+... +...+..+++.++.-..+|.+
T Consensus 25 ~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~ 72 (188)
T 3anw_A 25 DFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIK 72 (188)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHH
No 487
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=20.02 E-value=2.4e+02 Score=20.58 Aligned_cols=37 Identities=35% Similarity=0.467 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028999 87 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 133 (200)
Q Consensus 87 ~dAI~YIk~L~~~v~~L~~~~~~L~~ei~~L~~eknELr~Ek~~Lk~ 133 (200)
.+||++|...+- .-..+|..|+..-.|..++.++|.+
T Consensus 60 deaiehier~rl----------~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 60 DEAIEHIERSRL----------VYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcc
Done!