BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029000
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE
PE=1 SV=2
Length = 447
Score = 137 bits (345), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 81/123 (65%)
Query: 4 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
W L GK HS +P++ +N +EL EAL IQ RFY DF PHPKE Y F+ STMKPT
Sbjct: 216 WNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPT 275
Query: 64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKY 123
W G N IPGE T+ GD+RLTPFY++ ++ +++ Y+ DIN NI +L RGP SKY
Sbjct: 276 LWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKY 335
Query: 124 VLP 126
+P
Sbjct: 336 DVP 338
>sp|Q8PAU0|DAPE_XANCP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dapE PE=3 SV=2
Length = 376
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
L V G H PHKA NP+ LA AL + R + D GFE+ P++++
Sbjct: 185 NLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTSLQI 234
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 100
+ G N IPGE V+ ++R TP +N + + +
Sbjct: 235 SNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|Q4USS4|DAPE_XANC8 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=dapE PE=3 SV=2
Length = 376
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
L V G H PHKA NP+ LA AL + R + D GFE+ P++++
Sbjct: 185 NLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTSLQI 234
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 100
+ G N IPGE V+ ++R TP +N + + +
Sbjct: 235 SNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|B0RW53|DAPE_XANCB Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain B100) GN=dapE PE=3 SV=1
Length = 376
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
L V G H PHKA NP+ LA AL + R + D GFE+ P++++
Sbjct: 185 NLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTSLQI 234
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 100
+ G N IPGE V+ ++R TP +N + + +
Sbjct: 235 SNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|Q5H1C8|DAPE_XANOR Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=dapE PE=3 SV=2
Length = 376
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
L V G H PHKA NP+ LA AL + R + D GFE+ P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQVS 234
Query: 64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
G N IPGE V+ ++R TP ++ + + +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q2P492|DAPE_XANOM Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=dapE PE=3 SV=1
Length = 376
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
L V G H PHKA NP+ LA AL + R + D GFE+ P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQVS 234
Query: 64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
G N IPGE V+ ++R TP ++ + + +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|B2SQY5|DAPE_XANOP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=dapE PE=3 SV=1
Length = 376
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
L V G H PHKA NP+ LA AL + R + D GFE+ P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQVS 234
Query: 64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
G N IPGE V+ ++R TP ++ + + +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLETEITALLD 276
>sp|Q8PMJ5|DAPE_XANAC Succinyl-diaminopimelate desuccinylase OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=dapE PE=3 SV=1
Length = 376
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
L V G H PHKA NP+ LA AL + R + D GFE+ P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQLS 234
Query: 64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
G N IPGE V+ ++R TP ++ + + +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q3BVJ3|DAPE_XANC5 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=dapE PE=3 SV=1
Length = 376
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
L V G H PHKA NP+ LA AL + R + D GFE+ P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQLS 234
Query: 64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
G N IPGE V+ ++R TP ++ + + +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q87F49|DAPE_XYLFT Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=dapE PE=3 SV=1
Length = 377
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQ 64
LHV G H PH+A NP+ LA+ A + R + D G+E+ PST
Sbjct: 185 LHVKGVQGHVAYPHQARNPIHLALPAFAALTARHWDD----------GYESFPSTSLQIS 234
Query: 65 WSYPGGGINQ-IPGECTVSGDVRLTPFY 91
+ G G N IPG V+ ++R P +
Sbjct: 235 NIHAGTGANNVIPGALEVAFNLRYNPHW 262
>sp|B2I6B4|DAPE_XYLF2 Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain M23) GN=dapE PE=3 SV=1
Length = 377
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQ 64
LHV G H PH+A NP+ LA+ A + R + D G+E+ PST
Sbjct: 185 LHVKGVQGHVAYPHQARNPIHLALPAFAALTARHWDD----------GYESFPSTSLQIS 234
Query: 65 WSYPGGGINQ-IPGECTVSGDVRLTPFY 91
+ G G N IPG V+ ++R P +
Sbjct: 235 NIHAGTGANNVIPGALEVAFNLRYNPHW 262
>sp|Q9PH30|DAPE_XYLFA Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain 9a5c) GN=dapE PE=3 SV=1
Length = 377
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQ 64
LHV G H PH+A NP+ LA+ AL + R + D G E+ PST
Sbjct: 185 LHVKGVQGHVAYPHQARNPIHLAVPALAALTARHWDD----------GDESFPSTSLQIS 234
Query: 65 WSYPGGGINQ-IPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
+ G G N IPG V+ ++R P ++ + + +D
Sbjct: 235 NIHAGTGANNVIPGALEVAFNLRYNPHWSAPRLESEIVALLD 276
>sp|Q6LXF3|Y1398_METMP Uncharacterized metallohydrolase MMP1398 OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1398 PE=1 SV=1
Length = 415
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 2 IPW-KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETP--S 58
I W K +TGK H +P IN +A K + + Y + + + P S
Sbjct: 201 ILWLKFKITGKQCHGSVPENGINADLIAFSFGKGLYDKLYGKY-----DGINPIFNPAFS 255
Query: 59 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEK 113
T +PT IN IPG ++ D R+ P Y+ +V+ ++ Y++ IEK
Sbjct: 256 TFEPTILKNNIENINTIPGYVELNFDCRIIPKYDPKEVLSDIENYIEVFKNEIEK 310
>sp|B0U296|DAPE_XYLFM Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain M12) GN=dapE PE=3 SV=1
Length = 377
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQ 64
LHV G H PH+A NP+ LA+ AL + R + D G E+ PST
Sbjct: 185 LHVKGVQGHVAYPHQARNPIHLAVPALAALTGRHWDD----------GDESFPSTSLQIS 234
Query: 65 WSYPGGGINQ-IPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
+ G G N IPG V+ ++R P ++ + + +D
Sbjct: 235 NIHAGTGANNVIPGALEVAFNLRYNPHWSAPRLESEIVALLD 276
>sp|B4SQ35|DAPE_STRM5 Succinyl-diaminopimelate desuccinylase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=dapE PE=3 SV=1
Length = 375
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
KL V G H P KA NP+ A AL + R + D G+E+ P++++
Sbjct: 184 KLRVQGVQGHVAYPEKARNPIHQAAPALAELSARRWDD----------GYESFPPTSLQI 233
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
+ G N IPGE V ++R P ++ + + +D
Sbjct: 234 SNIHAGTGANNVIPGELEVDFNIRYNPHWDAPKLEAEITALLD 276
>sp|A3QGR1|DAPE2_SHELP Succinyl-diaminopimelate desuccinylase 2 OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=dapE2 PE=3 SV=1
Length = 377
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK----DFPPHPKEQVYGFETP 57
I +L + GK H P A+N L +A ++ ++ + DFP
Sbjct: 177 ISARLTLKGKQGHVAYPKNAVNALHMAARVMQALEALIWDEGSDDFPG------------ 224
Query: 58 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTR 117
++++ T N +PG C + ++R + Y+ +M R+Q +D ++ + + R
Sbjct: 225 TSLQVTHVDSGAFTDNIVPGSCEICFNIRYSYRYSEAGIMARIQACLDGLSLGEDAISLR 284
>sp|B2FIC0|DAPE_STRMK Succinyl-diaminopimelate desuccinylase OS=Stenotrophomonas
maltophilia (strain K279a) GN=dapE PE=3 SV=1
Length = 375
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
KL V G H P KA NP+ A AL + R + D G+E+ P++++
Sbjct: 184 KLRVQGVQGHVAYPEKARNPIHQAAPALAELCARRWDD----------GYESFPPTSLQI 233
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNV 93
+ G N IPGE V ++R P ++
Sbjct: 234 SNIHAGTGANNVIPGELDVDFNIRYNPHWDA 264
>sp|Q0BUB7|DAPE_GRABC Succinyl-diaminopimelate desuccinylase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dapE
PE=3 SV=2
Length = 383
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQW 65
L V G+ H PH+A NPL + AL + T D + GFE PS+++ T
Sbjct: 182 LTVRGRQGHVAYPHRADNPLPRLVAALHALTTTRLDD-------GMEGFE-PSSLQLTTV 233
Query: 66 SYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 106
N IP + ++R P + D+ + L+ V D
Sbjct: 234 DVGNPATNVIPEQAQARLNIRFNPLHRGDDLARWLRGIVQD 274
>sp|Q87MI6|DAPE_VIBPA Succinyl-diaminopimelate desuccinylase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=dapE PE=3 SV=1
Length = 378
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETP 57
I L V G H PH A NP+ ++ A+ + T + FPP F+ P
Sbjct: 183 ITGDLTVKGTQGHVAYPHLANNPVHASLLAIHELATTEWDKGNDYFPP------TSFQIP 236
Query: 58 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD--DIN 108
+ T G N IPGE V ++R + N +++R+ E +D D+N
Sbjct: 237 NVSAGT------GASNVIPGEFNVQFNLRFSTELNNDTIVQRVTETLDKHDLN 283
>sp|C3LRV6|ARGE_VIBCM Acetylornithine deacetylase OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=argE PE=3 SV=1
Length = 378
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
+ VTGK HS P +N +E+ E AL ++ R K++ HP GFE P+
Sbjct: 183 IRVTGKSGHSSNPALGVNAIEIMHEVLFALMQLRDRLIKEY-HHP-----GFEIPTPTLN 236
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN----IEKLDTRG 118
+ G N+I G C + DVR P ++ + + + + ++ + IE +
Sbjct: 237 LGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNLMHDALREVQQKWPGRIELVPLHD 296
Query: 119 PVSKY 123
P+ Y
Sbjct: 297 PIPGY 301
>sp|Q9KNT5|ARGE_VIBCH Acetylornithine deacetylase OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=argE PE=3 SV=1
Length = 378
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
+ VTGK HS P +N +E+ E AL ++ R K++ HP GFE P+
Sbjct: 183 IRVTGKSGHSSNPALGVNAIEIMHEVLFALMQLRDRLIKEY-HHP-----GFEIPTPTLN 236
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN----IEKLDTRG 118
+ G N+I G C + DVR P ++ + + + + ++ + IE +
Sbjct: 237 LGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNLMHDALREVQQKWPGRIELVPLHD 296
Query: 119 PVSKY 123
P+ Y
Sbjct: 297 PIPGY 301
>sp|A5F4Z7|ARGE_VIBC3 Acetylornithine deacetylase OS=Vibrio cholerae serotype O1 (strain
ATCC 39541 / Ogawa 395 / O395) GN=argE PE=3 SV=1
Length = 378
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
+ VTGK HS P +N +E+ E AL ++ R K++ HP GFE P+
Sbjct: 183 IRVTGKSGHSSNPALGVNAIEIMHEVLFALMQLRDRLIKEY-HHP-----GFEIPTPTLN 236
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN----IEKLDTRG 118
+ G N+I G C + DVR P ++ + + + + ++ + IE +
Sbjct: 237 LGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNLMHDALREVQQKWPGRIELVPLHD 296
Query: 119 PVSKY 123
P+ Y
Sbjct: 297 PIPGY 301
>sp|Q5LN80|DAPE_RUEPO Succinyl-diaminopimelate desuccinylase OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=dapE PE=3 SV=1
Length = 380
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 9/110 (8%)
Query: 1 MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
M W VTG HS PH+A NPL R H +Q PST+
Sbjct: 183 MTAW-FTVTGVQGHSAYPHRAKNPLP--------AMARLMDRLASHGLDQGTDHFDPSTL 233
Query: 61 KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110
N IP +C + ++R ++ + +Q D + E
Sbjct: 234 AVVTIDTGNTATNVIPAQCRGAVNIRFNDLHSGASLTGWMQGEADRVAEE 283
>sp|Q886Q4|DAPE_PSESM Succinyl-diaminopimelate desuccinylase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=dapE PE=3 SV=1
Length = 383
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPSTMK 61
KL V GK H PH A NP+ LA AL + + DF P P++ +
Sbjct: 192 KLTVRGKQGHVAYPHLAKNPIHLATPALAELAAEHWDNGNDFFP-----------PTSFQ 240
Query: 62 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
+ + G N IPG+ + R + V + +R+ +D
Sbjct: 241 ISNLNSGTGATNVIPGDLVAVFNFRFSTESTVEGLQQRVAAILD 284
>sp|A0L3N2|DAPE_MAGSM Succinyl-diaminopimelate desuccinylase OS=Magnetococcus sp. (strain
MC-1) GN=dapE PE=3 SV=2
Length = 380
Score = 36.6 bits (83), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMK 61
+ +L + G H PH NP+ A L I + + +Q F P++++
Sbjct: 183 VNGRLTIRGVQGHVAYPHLVDNPIHRAAPVLAAISSMTF--------DQGDRFFQPTSLQ 234
Query: 62 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
T G N +PGE T ++R + + + R+++ +D
Sbjct: 235 FTAVQSGGSATNVVPGELTAGFNIRFSAMHTPESLEARIRQVLD 278
>sp|Q0A7H5|DAPE_ALHEH Succinyl-diaminopimelate desuccinylase OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=dapE PE=3 SV=1
Length = 375
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKD---FPPHPKEQVYGFETPSTM 60
+L V G H PH A NP+ A+ AL +++ TR+ + FPP F+ +
Sbjct: 184 RLTVRGDQGHVAYPHLARNPVHQALAALDELVTTRWDEGNDHFPP------TSFQISNVQ 237
Query: 61 KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
T G N IPGE V+ + R + ++ +R++ +D
Sbjct: 238 AGT------GATNVIPGELEVTFNFRFSTEVTADELQQRVEAVLD 276
>sp|B5FGX0|DAPE_VIBFM Succinyl-diaminopimelate desuccinylase OS=Vibrio fischeri (strain
MJ11) GN=dapE PE=3 SV=1
Length = 377
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTM 60
L V G H PH A NP+ AM AL + T + + FPP F+ P+
Sbjct: 186 NLTVKGIQGHVAYPHIARNPIHQAMPALSELATTVWDNGNDYFPP------TSFQIPNMN 239
Query: 61 KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
T G N IPG + + R + V ++ +R+ E +D
Sbjct: 240 GGT------GASNVIPGTVDIMFNFRFSTESTVDELQQRVVEILD 278
>sp|Q5E3I7|DAPE_VIBF1 Succinyl-diaminopimelate desuccinylase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=dapE PE=3 SV=1
Length = 377
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTM 60
L V G H PH A NP+ AM AL + T + + FPP F+ P+
Sbjct: 186 NLTVKGIQGHVAYPHIARNPIHQAMPALSELATTVWDNGNDYFPP------TSFQIPNMN 239
Query: 61 KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
T G N IPG + + R + V ++ +R+ E +D
Sbjct: 240 GGT------GASNVIPGTVDIMFNFRFSTESTVDELQQRVVEILD 278
>sp|C5BQE9|DAPE_TERTT Succinyl-diaminopimelate desuccinylase OS=Teredinibacter turnerae
(strain ATCC 39867 / T7901) GN=dapE PE=3 SV=1
Length = 375
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPSTMK 61
KL V GK H PH A NP+ L AL + + DF P QV F +
Sbjct: 184 KLTVKGKQGHVAYPHLAKNPIHLVAPALADLAAEQWDEGNDFFPATSFQVSNFNAGT--- 240
Query: 62 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 101
G N IPGE + + R + ++ +R +
Sbjct: 241 --------GATNVIPGEAAIVFNFRFSTESTADELKQRTE 272
>sp|B6EMN5|ARGE_ALISL Acetylornithine deacetylase OS=Aliivibrio salmonicida (strain
LFI1238) GN=argE PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 21/152 (13%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
+ VTGK HS P +N LE+ E AL ++ + K++ GF P
Sbjct: 183 VRVTGKSGHSSNPAYGVNALEIMNEIMFALMNLKNKLVKEY------HNPGFSIPYPTLN 236
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN----IEKLDTRG 118
+ G N+I G C + DVR P ++ + L++ + D+ E IE
Sbjct: 237 LGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNMLRDALKDVEEKWPGRIEITPLHE 296
Query: 119 PVSKYVLPDEN--------IRGRHVLSLHYLT 142
P+ Y ++ I G+ V +++Y T
Sbjct: 297 PIPGYECSADSPIVTSVAEICGQEVETVNYCT 328
>sp|Q2NS82|DAPE_SODGM Succinyl-diaminopimelate desuccinylase OS=Sodalis glossinidius
(strain morsitans) GN=dapE PE=3 SV=1
Length = 375
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 5 KLHVTGKLFHSGLPHKAINPLELAMEALK-VIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
L V G H PH A NP AM ALK +++T++ ++ F P+TM+
Sbjct: 184 NLVVQGVQGHVAYPHLADNPFHRAMAALKELVETQW---------DEGNSFFPPTTMQIA 234
Query: 64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 99
G N IPGE V + R + +TDV+ R
Sbjct: 235 NIHAGTGSNNVIPGELLVQFNFRFS--TELTDVIIR 268
>sp|Q48F49|DAPE_PSE14 Succinyl-diaminopimelate desuccinylase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=dapE PE=3 SV=1
Length = 383
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPSTMKP 62
L V GK H PH A NP+ LA+ AL + + DF P P++ +
Sbjct: 193 LTVRGKQGHVAYPHLAKNPIHLAVPALAELAAEHWDHGNDFFP-----------PTSFQI 241
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
+ + G N IPG+ + R + V + +R+ +D
Sbjct: 242 SNLNAGTGATNVIPGDLVAVFNFRFSTESTVEGLQQRVAAILD 284
>sp|B2VE50|DAPE_ERWT9 Succinyl-diaminopimelate desuccinylase OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=dapE PE=3 SV=1
Length = 375
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGFETPSTM 60
I L + G H PH A NP+ AM AL +++ T + K P P++M
Sbjct: 181 ITANLTIHGVQGHVAYPHLADNPVHRAMPALNELVATEWDKGNEFFP---------PTSM 231
Query: 61 KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM 97
+ G N IPG+C V + R + +TDVM
Sbjct: 232 QIANVQAGTGSNNVIPGDCFVQFNFRFS--TELTDVM 266
>sp|A8GHK9|DAPE_SERP5 Succinyl-diaminopimelate desuccinylase OS=Serratia proteamaculans
(strain 568) GN=dapE PE=3 SV=1
Length = 375
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALK---VIQTRFYKDFPPHPKEQVYGFETPS 58
I LH+ G H PH A NP+ AM AL I+ +F P P+
Sbjct: 181 ITANLHIHGIQGHVAYPHLADNPVHRAMPALNELVAIEWDRGNEFFP-----------PT 229
Query: 59 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD--DINENIE 112
+M+ G N IPGE V + R + + +R++E ++ +N +IE
Sbjct: 230 SMQIANVQAGTGSNNVIPGEMFVQFNFRFSTESTDATIKQRVEELLERHQLNYSIE 285
>sp|Q57899|Y457_METJA Uncharacterized metallohydrolase MJ0457 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0457 PE=3 SV=1
Length = 410
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 2 IPW-KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETP--S 58
I W K ++ GK H P +N +A + Y+ F +++ P S
Sbjct: 200 ILWIKFNIKGKQCHGSTPENGLNADIVAFNFANELYNGLYEKF-----DEINSIFLPEYS 254
Query: 59 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 104
T +PT N IPG V D R+ P Y + +V++ + +++
Sbjct: 255 TFEPTILKNKVENPNTIPGYVEVVFDCRILPTYKIEEVLEFINKFI 300
>sp|B0T134|DAPE_CAUSK Succinyl-diaminopimelate desuccinylase OS=Caulobacter sp. (strain
K31) GN=dapE PE=3 SV=2
Length = 387
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQW 65
+ V G+ H P +A NP+ + ++ L +Q+R E GF+ PS ++ T
Sbjct: 191 IAVDGRQGHVAYPQRAANPIPVMVDILSRLQSRVL-------DEGYEGFQ-PSNLEVTTI 242
Query: 66 SYPGGGINQIPGECTVSGDVRLTPFYNVTD----VMKRLQEYVDDINENIEKL 114
N IP ++R P + D + + ++ D + +E L
Sbjct: 243 DVGNTATNVIPASAKARINIRFNPAHQGKDLRAWIEQECRDAADGFSGRVEAL 295
>sp|B4RDU4|DAPE_PHEZH Succinyl-diaminopimelate desuccinylase OS=Phenylobacterium zucineum
(strain HLK1) GN=dapE PE=3 SV=1
Length = 380
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMK 61
I ++ V G H PH+A NP+ + + L +Q R + P F+ PS ++
Sbjct: 183 INAEILVEGIQGHVAYPHRAANPVPVLVRLLAALQDRALDEGYPE-------FQ-PSNLE 234
Query: 62 PTQWSYPGGGINQIPGECTVSGDVRLTP 89
T P N IPG ++R P
Sbjct: 235 VTMIDVPNTATNVIPGTAKARLNIRFNP 262
>sp|Q9CLT9|ARGE_PASMU Acetylornithine deacetylase OS=Pasteurella multocida (strain Pm70)
GN=argE PE=3 SV=2
Length = 382
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALK-VIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ 64
L +TGK HS P K IN +EL EA ++Q R K F P
Sbjct: 186 LRITGKSGHSSDPSKGINAIELMHEATGYLMQMRDEL----RQKYHHAAFNIPYPTMNFG 241
Query: 65 WSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 101
G +N+I C + D+R P +TD+ + LQ
Sbjct: 242 AISGGDAVNRICACCELHFDIRPLPNLRLTDLNEMLQ 278
>sp|P59601|ARGE_VIBPA Acetylornithine deacetylase OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=argE PE=3 SV=1
Length = 378
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
+ VTGK HS P +N +E+ E A+ ++ + K++ HP GF PS
Sbjct: 183 IRVTGKSGHSSDPALGVNAIEIMHEVLFAMMQLRDKLIKEY-HHP-----GFAIPSPTLN 236
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108
+ G N+I G C + DVR P ++ + L+ + ++
Sbjct: 237 LGHIHGGDSANRICGCCELHYDVRPLPGISLDGLENMLRSALQEVE 282
>sp|Q9ABF3|DAPE_CAUCR Succinyl-diaminopimelate desuccinylase OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=dapE PE=3 SV=1
Length = 386
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQW 65
+ V G+ H PH+A NP+ + ++ L ++ R D GF+ PS ++ T
Sbjct: 190 ITVEGRQGHVAYPHRAANPVPVLVDILSALKARVLDD-------GYTGFQ-PSNLEITTI 241
Query: 66 SYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 116
N IP ++R P + D+ ++ E + T
Sbjct: 242 DVGNTATNVIPAAAKARVNIRFNPAHKGKDLAAWIEGECAKAAEGFDGAAT 292
>sp|B8GYE7|DAPE_CAUCN Succinyl-diaminopimelate desuccinylase OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=dapE PE=3 SV=1
Length = 386
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQW 65
+ V G+ H PH+A NP+ + ++ L ++ R D GF+ PS ++ T
Sbjct: 190 ITVEGRQGHVAYPHRAANPVPVLVDILSALKARVLDD-------GYTGFQ-PSNLEITTI 241
Query: 66 SYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 116
N IP ++R P + D+ ++ E + T
Sbjct: 242 DVGNTATNVIPAAAKARVNIRFNPAHKGKDLAAWIEGECAKAAEGFDGAAT 292
>sp|Q6D7N4|DAPE_ERWCT Succinyl-diaminopimelate desuccinylase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=dapE
PE=3 SV=1
Length = 375
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYK--DFPPHPKEQVYGFETPS 58
I L + G H PH A NP+ A AL ++I T + + DF P P+
Sbjct: 181 ITANLRIHGMQGHVAYPHLADNPVHRAAPALNELIATEWDRGNDFFP-----------PT 229
Query: 59 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM--KRLQEYVD 105
TM+ G N IPGE V + R + +TDV+ +R+ E +D
Sbjct: 230 TMQIANIQAGTGSNNVIPGELFVQFNFRFS--TELTDVLIQQRVAELLD 276
>sp|Q8H3C7|ILL9_ORYSJ IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp.
japonica GN=ILL9 PE=2 SV=2
Length = 440
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 8 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY 67
+TGK H+ PH AI+P+ A A+ +Q ++ P + G T +Y
Sbjct: 229 ITGKGGHAAFPHDAIDPVVAASNAILSLQQIVAREIDP-----LQGAVVSITFVKGGEAY 283
Query: 68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
N IP G +R + +MKR++E V+
Sbjct: 284 -----NVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVE 316
>sp|Q5E2E4|ARGE_VIBF1 Acetylornithine deacetylase OS=Vibrio fischeri (strain ATCC 700601
/ ES114) GN=argE PE=3 SV=1
Length = 378
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
+ VTGK HS P +N LE+ E AL ++ + K++ GF P
Sbjct: 183 IRVTGKSGHSSDPAHGVNALEIMNEIMFALMTLKNKLVKEY------HNPGFSIPYPTLN 236
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN----IEKLDTRG 118
+ G N+I G C + DVR P ++ + L++ + +I I+
Sbjct: 237 LGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNMLRDALKEIEAKWPGRIDITPLHE 296
Query: 119 PVSKY--------VLPDENIRGRHVLSLHYLT 142
P+ Y V +I G+ V +++Y T
Sbjct: 297 PIPGYECSADSPIVTSTADICGQDVETVNYCT 328
>sp|A7MY37|DAPE_VIBHB Succinyl-diaminopimelate desuccinylase OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=dapE PE=3 SV=1
Length = 378
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETP 57
I L V G H PH A NP+ ++ A+ + T + FPP F+ P
Sbjct: 183 ITGDLTVKGTQGHVAYPHLANNPVHQSLMAIHELATTEWDQGNDYFPP------TSFQIP 236
Query: 58 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
+ T G N IPGE V ++R + + +++R+ E +D
Sbjct: 237 NVSAGT------GASNVIPGEFNVQFNLRFSTELSNEVIVQRITETLD 278
>sp|B7VLL4|ARGE_VIBSL Acetylornithine deacetylase OS=Vibrio splendidus (strain LGP32)
GN=argE PE=3 SV=1
Length = 378
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 8 VTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ 64
VTGK HS P +N +E+ E AL ++ + K++ HP GF PS
Sbjct: 185 VTGKSGHSSDPALGVNAIEIMHEVLFALMQLRDKLVKEY-HHP-----GFAIPSPTLNLG 238
Query: 65 WSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108
+ G N+I G C + DVR P ++ + L+ + ++
Sbjct: 239 HIHGGDSANRICGCCELHYDVRPLPGISLDGLDNMLRSALKEVE 282
>sp|Q851L6|ILL4_ORYSJ IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp.
japonica GN=ILL4 PE=2 SV=1
Length = 414
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 8 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY 67
+TGK H+ PH A++P+ A A+ +Q ++ P V + +T+K
Sbjct: 197 ITGKGGHAAEPHLAVDPIVAASSAVLSLQQIVARETNPLQGAVV----SVTTIK------ 246
Query: 68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD---INENIEKLD--------- 115
G N IP T+ G +R ++ +M R++E ++ +N +D
Sbjct: 247 GGEAFNVIPESVTLGGTLRSMTTDGLSYLMNRIREVIEGQAAVNRCTAAVDFMEDKLRPY 306
Query: 116 -----TRGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLR 154
G + E++ G +++ + +G +DF + R
Sbjct: 307 PATVNDEGMYAHAKAVAESMLGEANVTVSPMCMGAEDFGFYAQR 350
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 58 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL----QEYVDDINENIEK 113
+M+P +++ P N ECTV R P NV +M+R+ + DD E I++
Sbjct: 33 GSMRPPEFNQPNKTSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQE 92
Query: 114 LDTRGPVSKYV 124
VS+Y+
Sbjct: 93 C-----VSEYI 98
>sp|A1AVU9|DAPE_RUTMC Succinyl-diaminopimelate desuccinylase OS=Ruthia magnifica subsp.
Calyptogena magnifica GN=dapE PE=3 SV=1
Length = 376
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQW 65
L + GK H PH A NP+ LA+ AL + + K Y P+T
Sbjct: 185 LKIIGKQGHIAYPHLADNPIHLAISALNDLCNEVWD------KGNEY---FPATSFQISN 235
Query: 66 SYPGGGI-NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 104
+ G G+ N IPGE DV L Y+ + K+LQ V
Sbjct: 236 IHSGTGVTNIIPGE----SDVVLNFRYSTQNTHKQLQSRV 271
>sp|A7MXC2|ARGE_VIBHB Acetylornithine deacetylase OS=Vibrio harveyi (strain ATCC BAA-1116
/ BB120) GN=argE PE=3 SV=1
Length = 378
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 6 LHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
+ VTGK HS P +N +E+ E A+ ++ + K++ HP GF PS
Sbjct: 183 IRVTGKSGHSSDPALGVNAIEIMHEVMFAMMQLRDKLVKEY-HHP-----GFAIPSPTLN 236
Query: 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108
+ G N+I G C + DVR P ++ + L+ + ++
Sbjct: 237 LGHIHGGDSANRICGCCELHYDVRPLPGISLDGLENMLRGALKEVE 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,722,307
Number of Sequences: 539616
Number of extensions: 3446959
Number of successful extensions: 7873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 7819
Number of HSP's gapped (non-prelim): 150
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)