Query 029000
Match_columns 200
No_of_seqs 290 out of 1841
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1473 AbgB Metal-dependent a 99.9 2.3E-21 4.9E-26 167.0 12.4 154 2-175 185-354 (392)
2 PLN02693 IAA-amino acid hydrol 99.8 6E-20 1.3E-24 161.2 14.1 153 2-175 217-386 (437)
3 PLN02280 IAA-amino acid hydrol 99.8 3.3E-19 7.2E-24 157.9 13.7 155 2-175 267-438 (478)
4 PF07687 M20_dimer: Peptidase 99.7 1E-17 2.2E-22 120.0 10.0 103 2-109 7-109 (111)
5 TIGR03176 AllC allantoate amid 99.7 1.4E-17 3.1E-22 145.0 10.5 150 2-173 209-371 (406)
6 TIGR01891 amidohydrolases amid 99.7 5.9E-17 1.3E-21 139.0 11.3 154 2-175 171-339 (363)
7 PRK12891 allantoate amidohydro 99.7 4.3E-17 9.4E-22 142.2 10.2 150 2-174 215-378 (414)
8 PRK08588 succinyl-diaminopimel 99.7 1.2E-16 2.6E-21 137.5 11.5 156 2-165 174-344 (377)
9 PRK06915 acetylornithine deace 99.7 1.7E-16 3.6E-21 138.7 12.2 161 2-165 206-386 (422)
10 PRK12893 allantoate amidohydro 99.7 1.2E-16 2.7E-21 139.1 10.2 140 2-154 215-367 (412)
11 PRK09290 allantoate amidohydro 99.7 4.2E-16 9.1E-21 135.9 12.1 141 2-155 216-369 (413)
12 PRK12890 allantoate amidohydro 99.7 3.5E-16 7.6E-21 136.4 9.6 140 2-154 217-369 (414)
13 PRK12892 allantoate amidohydro 99.7 6.8E-16 1.5E-20 134.4 11.0 140 2-154 216-368 (412)
14 PRK13007 succinyl-diaminopimel 99.6 9.9E-16 2.1E-20 130.6 11.2 100 2-108 168-267 (352)
15 TIGR01910 DapE-ArgE acetylorni 99.6 5.1E-16 1.1E-20 133.6 9.4 148 2-153 180-341 (375)
16 TIGR01879 hydantase amidase, h 99.6 4.7E-16 1E-20 135.2 9.2 140 2-154 208-360 (401)
17 PRK08737 acetylornithine deace 99.6 1.8E-15 4E-20 130.0 12.4 100 2-107 168-268 (364)
18 TIGR01246 dapE_proteo succinyl 99.6 9.2E-16 2E-20 131.7 10.2 154 2-166 178-341 (370)
19 PRK13009 succinyl-diaminopimel 99.6 1.3E-15 2.8E-20 130.9 11.1 101 2-111 181-282 (375)
20 PRK08651 succinyl-diaminopimel 99.6 2.1E-15 4.6E-20 130.4 11.2 106 2-110 185-292 (394)
21 PRK13590 putative bifunctional 99.6 1.4E-15 3.1E-20 138.1 10.6 140 2-155 393-545 (591)
22 PRK13799 unknown domain/N-carb 99.6 2.1E-15 4.5E-20 137.0 11.4 142 2-155 393-547 (591)
23 TIGR01892 AcOrn-deacetyl acety 99.6 6.1E-15 1.3E-19 126.1 11.7 103 2-108 169-272 (364)
24 PRK13013 succinyl-diaminopimel 99.6 6.1E-15 1.3E-19 128.9 11.8 107 2-109 201-319 (427)
25 TIGR03526 selenium_YgeY putati 99.6 5.2E-15 1.1E-19 128.3 11.2 99 2-107 182-280 (395)
26 PRK05111 acetylornithine deace 99.6 7.7E-15 1.7E-19 126.5 12.0 106 2-110 182-287 (383)
27 PRK00466 acetyl-lysine deacety 99.6 4.1E-15 8.8E-20 126.8 9.7 144 2-166 161-312 (346)
28 PRK07522 acetylornithine deace 99.6 8.8E-15 1.9E-19 126.1 11.7 102 2-106 178-280 (385)
29 TIGR03320 ygeY M20/DapE family 99.6 1.5E-14 3.3E-19 125.3 12.7 99 2-107 182-280 (395)
30 PRK08652 acetylornithine deace 99.6 6.4E-15 1.4E-19 125.2 9.8 116 2-130 156-271 (347)
31 PRK06837 acetylornithine deace 99.6 1.1E-14 2.4E-19 127.6 11.1 163 2-166 210-392 (427)
32 PRK08262 hypothetical protein; 99.6 1.1E-14 2.5E-19 129.4 9.1 152 2-155 242-438 (486)
33 TIGR01900 dapE-gram_pos succin 99.5 6.8E-14 1.5E-18 120.6 12.8 96 2-104 182-277 (373)
34 PRK13983 diaminopimelate amino 99.5 2.7E-14 5.8E-19 123.6 10.1 105 2-109 197-301 (400)
35 PRK13004 peptidase; Reviewed 99.5 6.3E-14 1.4E-18 121.7 11.1 97 2-105 184-280 (399)
36 TIGR01883 PepT-like peptidase 99.5 2.2E-14 4.8E-19 122.7 7.9 93 2-109 173-266 (361)
37 PRK07338 hypothetical protein; 99.5 1.6E-13 3.5E-18 119.1 10.6 93 2-108 204-297 (402)
38 TIGR01880 Ac-peptdase-euk N-ac 99.5 2.4E-13 5.3E-18 118.0 10.1 102 2-108 193-297 (400)
39 TIGR01902 dapE-lys-deAc N-acet 99.4 4.9E-13 1.1E-17 113.6 10.1 146 2-166 150-303 (336)
40 PRK06133 glutamate carboxypept 99.4 8.1E-13 1.8E-17 115.3 10.8 91 2-106 211-302 (410)
41 TIGR01886 dipeptidase dipeptid 99.4 9E-13 2E-17 116.8 11.0 144 3-153 256-423 (466)
42 PRK07906 hypothetical protein; 99.4 3.8E-13 8.2E-18 117.7 8.3 100 2-104 192-321 (426)
43 PRK04443 acetyl-lysine deacety 99.4 4.6E-13 9.9E-18 114.3 8.4 150 2-166 161-318 (348)
44 PRK13381 peptidase T; Provisio 99.4 7.4E-13 1.6E-17 115.2 8.1 92 2-109 210-302 (404)
45 PRK05469 peptidase T; Provisio 99.4 9.7E-13 2.1E-17 114.6 7.5 92 2-109 212-304 (408)
46 PRK06446 hypothetical protein; 99.4 2.8E-12 6E-17 112.7 10.3 105 2-107 182-331 (436)
47 PRK08596 acetylornithine deace 99.4 5.1E-12 1.1E-16 110.6 11.4 103 3-108 190-302 (421)
48 PRK06156 hypothetical protein; 99.3 6.4E-12 1.4E-16 112.8 9.6 151 3-165 300-480 (520)
49 PRK09133 hypothetical protein; 99.3 1.1E-11 2.4E-16 110.0 10.8 103 2-106 227-366 (472)
50 PRK07473 carboxypeptidase; Pro 99.3 2.6E-11 5.6E-16 104.8 10.3 88 2-105 187-275 (376)
51 COG0624 ArgE Acetylornithine d 99.3 8.6E-11 1.9E-15 102.3 13.0 156 2-166 198-376 (409)
52 TIGR01882 peptidase-T peptidas 99.2 7.8E-12 1.7E-16 109.1 4.8 92 2-109 214-306 (410)
53 PRK07318 dipeptidase PepV; Rev 99.2 5.9E-11 1.3E-15 105.2 10.0 102 3-110 257-373 (466)
54 PRK08201 hypothetical protein; 99.2 1.2E-10 2.6E-15 102.9 11.2 106 1-107 199-350 (456)
55 PRK09104 hypothetical protein; 99.2 1.4E-10 3E-15 102.7 10.6 105 2-107 208-358 (464)
56 KOG2275 Aminoacylase ACY1 and 99.2 1.6E-10 3.6E-15 98.6 10.1 105 2-110 210-317 (420)
57 PRK07907 hypothetical protein; 99.1 5.1E-10 1.1E-14 98.8 11.6 106 2-107 201-342 (449)
58 PRK07205 hypothetical protein; 99.1 5.2E-10 1.1E-14 98.6 11.6 98 4-108 240-348 (444)
59 PRK07079 hypothetical protein; 99.0 2.7E-09 5.9E-14 94.7 11.6 107 1-108 207-354 (469)
60 TIGR01893 aa-his-dipept aminoa 99.0 1.6E-09 3.6E-14 96.3 9.7 87 2-108 196-285 (477)
61 TIGR01887 dipeptidaselike dipe 99.0 2.8E-09 6E-14 94.2 10.9 96 3-104 244-354 (447)
62 PRK15026 aminoacyl-histidine d 99.0 1.4E-09 3E-14 97.0 8.2 85 2-106 202-289 (485)
63 PRK08554 peptidase; Reviewed 98.1 4.6E-06 1E-10 73.6 6.2 93 71-165 301-406 (438)
64 TIGR01893 aa-his-dipept aminoa 96.4 0.0027 5.9E-08 56.7 3.2 100 58-166 338-447 (477)
65 COG2195 PepD Di- and tripeptid 96.2 0.0018 4E-08 56.7 1.1 94 2-110 218-312 (414)
66 PRK15026 aminoacyl-histidine d 95.2 0.012 2.5E-07 52.9 2.1 95 70-166 349-453 (485)
67 COG4187 RocB Arginine degradat 90.3 0.57 1.2E-05 41.4 5.1 95 6-110 231-328 (553)
68 KOG2276 Metalloexopeptidases [ 73.4 7.4 0.00016 34.3 5.0 44 63-107 321-364 (473)
69 cd04869 ACT_GcvR_2 ACT domains 45.5 69 0.0015 20.5 4.9 35 76-110 42-76 (81)
70 cd04870 ACT_PSP_1 CT domains f 44.8 78 0.0017 20.2 5.0 35 77-111 37-71 (75)
71 cd06411 PB1_p51 The PB1 domain 33.4 1.1E+02 0.0023 20.5 4.2 33 78-110 4-36 (78)
72 cd06406 PB1_P67 A PB1 domain i 31.8 1.2E+02 0.0025 20.4 4.2 29 79-107 9-37 (80)
73 cd04871 ACT_PSP_2 ACT domains 30.6 96 0.0021 20.6 3.8 34 76-110 46-79 (84)
74 PF14811 TPD: Protein of unkno 27.1 33 0.00072 25.6 1.0 17 161-177 109-125 (139)
75 PF04327 DUF464: Protein of un 20.3 1.5E+02 0.0032 20.5 3.3 23 12-34 19-41 (103)
No 1
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.86 E-value=2.3e-21 Score=166.98 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=122.2
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
-.++|+++|++||++.||.|+||+.+++.++..|+.+..+...+ ..+.++++|.++ +|.+.||||+++++
T Consensus 185 d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p---------~~~~vv~vg~~~-aG~a~NVIpd~A~l 254 (392)
T COG1473 185 DEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDP---------LDSAVVTVGKIE-AGTAANVIPDSAEL 254 (392)
T ss_pred ceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCC---------ccCeEEEEEEec-CCCcCCcCCCeeEE
Confidence 36899999999999999999999999999999999876554332 124789999999 89999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCcccccc----c--------eeeecCC-CCcc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGR----H--------VLSLHYL-TLGR 145 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~----~--------~~~~~~~-~~~~ 145 (200)
.+++|++..+..+++.++++++++..+.. ++ ++. +...++++.+|..+... . ....... .+|+
T Consensus 255 ~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~-~~~~~p~~~Nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 333 (392)
T COG1473 255 EGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEID-YERGYPPVVNDPALTDLLAEAAEEVGGEEVVVVELPPSMAGS 333 (392)
T ss_pred EEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE-ecCCCCCccCCHHHHHHHHHHHHHhccccceecccCCCCCcc
Confidence 99999999999999999999999988765 33 222 33455667777653211 1 1112223 3599
Q ss_pred ccccccccccccccccccceeEEEEeeHHH
Q 029000 146 DDFRIFPLRWQRHKIKFGRLKCIFYLSIYK 175 (200)
Q Consensus 146 eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~ 175 (200)
|||++|..+++ ++|||+|..+
T Consensus 334 EDf~~~~~~~P---------g~~~~lG~~~ 354 (392)
T COG1473 334 EDFGYYLEKVP---------GAFFFLGTGS 354 (392)
T ss_pred chHHHHHHhCC---------eeEEEeecCc
Confidence 99999999887 8999999876
No 2
>PLN02693 IAA-amino acid hydrolase
Probab=99.83 E-value=6e-20 Score=161.24 Aligned_cols=153 Identities=17% Similarity=0.245 Sum_probs=111.7
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
.+++|+++|+++|+|.|+.|+|||..+++++.+|+++..+...+ ..+.++++|.++ ||...|+||++|++
T Consensus 217 ~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~---------~~~~ti~vg~i~-GG~~~NvVPd~a~~ 286 (437)
T PLN02693 217 GVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDP---------LDSKVVTVSKVN-GGNAFNVIPDSITI 286 (437)
T ss_pred eEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCC---------CCCcEEEEEEEE-cCCCCceECCeEEE
Confidence 47999999999999999999999999999999998863221111 234789999999 99999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhc----cc-ccccc-cCcccccCCCccccc-----------cceeeecCCCCc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN----IE-KLDTR-GPVSKYVLPDENIRG-----------RHVLSLHYLTLG 144 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~----v~-~~~~~-~~~~~~~~~d~~l~~-----------~~~~~~~~~~~~ 144 (200)
++|+|+.++ .+++.++|+++++..+.. ++ +.... .++.+++.+|+.+.. ..........+|
T Consensus 287 ~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~e~~~~~~~~~~~~~~~nd~~l~~~~~~~~~~~~G~~~~~~~~~~~g 364 (437)
T PLN02693 287 GGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNASVNLTPNGREPMPPTVNNMDLYKQFKKVVRDLLGQEAFVEAAPEMG 364 (437)
T ss_pred EEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEEEEEeecCccCCCCccCCHHHHHHHHHHHHHhcCCcceeecCCCce
Confidence 999999986 468999999998875432 22 11111 122344556654321 111111234578
Q ss_pred cccccccccccccccccccceeEEEEeeHHH
Q 029000 145 RDDFRIFPLRWQRHKIKFGRLKCIFYLSIYK 175 (200)
Q Consensus 145 ~eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~ 175 (200)
+|||++|...++ ++|+|+|..|
T Consensus 365 seDf~~~~~~vP---------~~~~~lG~~~ 386 (437)
T PLN02693 365 SEDFSYFAETIP---------GHFSLLGMQD 386 (437)
T ss_pred echHHHHHHHhh---------hhEEEEecCC
Confidence 999999998765 7889988774
No 3
>PLN02280 IAA-amino acid hydrolase
Probab=99.81 E-value=3.3e-19 Score=157.94 Aligned_cols=155 Identities=16% Similarity=0.286 Sum_probs=113.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
.+++|+++|+++|+|.|+.|+||+.++++++.+++++..+...+ ..+.++++|.++ ||...|+||++|++
T Consensus 267 ~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~---------~~~~tvnvg~I~-GG~~~NvIPd~~~l 336 (478)
T PLN02280 267 GFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANP---------LDSQVVSVTTMD-GGNNLDMIPDTVVL 336 (478)
T ss_pred eEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCC---------CCCcEEEEEEEE-ccCCCCEeCCEEEE
Confidence 58999999999999999999999999999999998853221111 134688999999 99999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccc---cccCcccccCCCccccccc----------e-eeecCCCCc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLD---TRGPVSKYVLPDENIRGRH----------V-LSLHYLTLG 144 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~---~~~~~~~~~~~d~~l~~~~----------~-~~~~~~~~~ 144 (200)
++|+|++++++.+++.++|+++++..+.. ++ ++. ......+++.+++.+.... . .....+.+|
T Consensus 337 ~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~~~~~~~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g 416 (478)
T PLN02280 337 GGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSATVDFFEKQNTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMG 416 (478)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEeccccCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCee
Confidence 99999999999999999999999875432 21 111 1112234455565432211 0 011124578
Q ss_pred cccccccccccccccccccceeEEEEeeHHH
Q 029000 145 RDDFRIFPLRWQRHKIKFGRLKCIFYLSIYK 175 (200)
Q Consensus 145 ~eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~ 175 (200)
++||++|...++ ++++|+|.+|
T Consensus 417 ~tD~~~~~~~vP---------~i~~glG~~~ 438 (478)
T PLN02280 417 AEDFSFYSQVVP---------AAFYYIGIRN 438 (478)
T ss_pred echHHHHHhhCC---------EEEEEEeecC
Confidence 999999986554 6778777654
No 4
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.75 E-value=1e-17 Score=119.98 Aligned_cols=103 Identities=25% Similarity=0.340 Sum_probs=86.5
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|+||+..+++++..|++...+.... .........+++++.++ +|...|++|++|++
T Consensus 7 ~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~ip~~a~~ 81 (111)
T PF07687_consen 7 IWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVIPDEATL 81 (111)
T ss_dssp EEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEESSEEEE
T ss_pred EEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEECCEEEE
Confidence 68999999999999999999999999999999999853221100 00011345899999999 88899999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINE 109 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~ 109 (200)
++|+|++|.++.+++.+.|++.+++.+.
T Consensus 82 ~~~~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 82 TVDIRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp EEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999988654
No 5
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.73 E-value=1.4e-17 Score=145.02 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=107.0
Q ss_pred eEEEEEEeeecCCcCCCCC--CCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGLPHK--AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~--g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
.+++|+++|+++||+.|+. ++||+.++++++.++++.. ... ..+.++++|.|+.+|+..|+||++|
T Consensus 209 ~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~-~~~-----------~~~~~~tvG~I~~gg~~~NvIP~~a 276 (406)
T TIGR03176 209 RRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERA-KEI-----------GDPLVLTFGKVEPVPNTVNVVPGET 276 (406)
T ss_pred eEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH-Hhc-----------CCCcEEEEEEEEEcCCceEEECCeE
Confidence 5899999999999998765 4899999999999998752 211 1235889999996688999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce--------eeecCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV--------LSLHYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~--------~~~~~~~~~~eDf 148 (200)
++++|+|+++.++.+++.++|++.+++.+.. ++ ++..... ..++..|+++...+. ........|++|+
T Consensus 277 ~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~~~~-~~p~~~d~~lv~~l~~a~~~~~~~~~~~~sggg~Da 355 (406)
T TIGR03176 277 TFTIDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDLWMD-EAPVPMNKEIVAIIEQLAKAEKLNYRLMHSGAGHDA 355 (406)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEEec-CCCCCCCHHHHHHHHHHHHHcCCCceecCcccHHHH
Confidence 9999999999999999999999998887644 32 1211111 223445555432211 0111234678999
Q ss_pred cccccccccccccccceeEEEEeeH
Q 029000 149 RIFPLRWQRHKIKFGRLKCIFYLSI 173 (200)
Q Consensus 149 ~~~~~~~~~~~~~fG~~~~~~~~~~ 173 (200)
++|...++ ++++|++.
T Consensus 356 ~~~~~~vP---------~~~ifgp~ 371 (406)
T TIGR03176 356 QIFAPRVP---------TAMIFVPS 371 (406)
T ss_pred HHHHHHCC---------EEEEEEeC
Confidence 99987544 55666654
No 6
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.71 E-value=5.9e-17 Score=138.97 Aligned_cols=154 Identities=20% Similarity=0.310 Sum_probs=110.6
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|++.|+.|+||+..+++++.+++++....... ....++++|.++ +|...|+||++|++
T Consensus 171 ~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~~~i~~i~-gG~~~nvvP~~~~~ 240 (363)
T TIGR01891 171 DKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDP---------SRPAVVTVGIIE-AGGAPNVIPDKASM 240 (363)
T ss_pred ceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCC---------CCCcEEEEEEEE-cCCCCcEECCeeEE
Confidence 47999999999999999999999999999999998752221111 123678999999 88899999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCcccccc----ceeeec--------CCCCccc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGR----HVLSLH--------YLTLGRD 146 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~----~~~~~~--------~~~~~~e 146 (200)
.+|+|+++.++.+++.++|++.+++.+.. ++ ++... ...++...|+++... .....+ ....|+.
T Consensus 241 ~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~~-~~~p~~~~~~~l~~~l~~a~~~~~g~~~~~~~~~~~~gg~ 319 (363)
T TIGR01891 241 SGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVELNYD-RGLPAVTNDPALTQILKEVARHVVGPENVAEDPEVTMGSE 319 (363)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe-cCCCCccCCHHHHHHHHHHHHHhcCccceeccCCCCcccc
Confidence 99999999999999999999999876533 22 12111 122334455543211 111111 2345789
Q ss_pred cccccccccccccccccceeEEEEeeHHH
Q 029000 147 DFRIFPLRWQRHKIKFGRLKCIFYLSIYK 175 (200)
Q Consensus 147 Df~~~~~~~~~~~~~fG~~~~~~~~~~~~ 175 (200)
|.++|...++ ++++|++..|
T Consensus 320 Da~~~~~~~P---------~~~~f~~~~~ 339 (363)
T TIGR01891 320 DFAYYSQKVP---------GAFFFLGIGN 339 (363)
T ss_pred CHHHHHHhCC---------eeEEEEecCC
Confidence 9999876554 6777877664
No 7
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.71 E-value=4.3e-17 Score=142.25 Aligned_cols=150 Identities=11% Similarity=0.052 Sum_probs=105.5
Q ss_pred eEEEEEEeeecCCcC-CCC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCC-CccceeCCe
Q 029000 2 IPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPG-GGINQIPGE 78 (200)
Q Consensus 2 ~~~~I~v~G~~gHas-~P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg-~~~NviP~~ 78 (200)
.+++|+++|+++||| .|+ .|+|||..+++++.+|+++ .+... .+.++++|.|+ +| ...|+||++
T Consensus 215 ~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~-~~~~~-----------~~~t~~vg~I~-gG~~~~NvVP~~ 281 (414)
T PRK12891 215 RWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDAL-GRRDA-----------PDARATVGMID-ARPNSRNTVPGE 281 (414)
T ss_pred EEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHH-HHhcC-----------CCeEEEEEEEE-eeCCCcceECCe
Confidence 689999999999988 576 5899999999999999875 22211 23689999999 65 689999999
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCcccccccee--------eecCCCCcccc
Q 029000 79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHVL--------SLHYLTLGRDD 147 (200)
Q Consensus 79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~~--------~~~~~~~~~eD 147 (200)
|++++|+|++++++.+++.++|++++++.+.. ++ ++... ...++..+|+++...+.. .......|++|
T Consensus 282 ~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~lv~~l~~a~~~~G~~~~~~~~~ggtD 360 (414)
T PRK12891 282 CFFTVEFRHPDDAVLDRLDAALRAELARIADETGLRADIEQI-FGYAPAPFAPGCIDAVRDAARALGLSHMDIVSGAGHD 360 (414)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCceecCCcchHH
Confidence 99999999999999999999999999876433 22 11111 122334556654322110 01123467889
Q ss_pred ccccccccccccccccceeEEEEeeHH
Q 029000 148 FRIFPLRWQRHKIKFGRLKCIFYLSIY 174 (200)
Q Consensus 148 f~~~~~~~~~~~~~fG~~~~~~~~~~~ 174 (200)
++++...++ ++++|++..
T Consensus 361 a~~~~~giP---------t~~~~gp~~ 378 (414)
T PRK12891 361 ACFAARGAP---------TGMIFVPCV 378 (414)
T ss_pred HHHHHhhCC---------EEEEEEcCC
Confidence 888754333 455565544
No 8
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.70 E-value=1.2e-16 Score=137.49 Aligned_cols=156 Identities=22% Similarity=0.275 Sum_probs=108.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|+|||..+++++.++++. ...+.... ......+++++.++ +|...|+||++|++
T Consensus 174 ~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~-~~~~~~~~-----~~~~~~t~~v~~i~-gG~~~nvip~~~~~ 246 (377)
T PRK08588 174 MDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEY-FDSIKKHN-----PYLGGLTHVVTIIN-GGEQVNSVPDEAEL 246 (377)
T ss_pred EEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHH-hhhhcccC-----ccCCCCceeeeEEe-CCCcCCcCCCeEEE
Confidence 5799999999999999999999999999999999874 22222110 11234789999999 99999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhc----ccccc-cccCcccccCCCccccccc----eeeec-----CCCCcccc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN----IEKLD-TRGPVSKYVLPDENIRGRH----VLSLH-----YLTLGRDD 147 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~----v~~~~-~~~~~~~~~~~d~~l~~~~----~~~~~-----~~~~~~eD 147 (200)
++|+|++++++.+++.++|++++++.+.. ++ +. ....++...+.|+++...+ ...++ ....|+.|
T Consensus 247 ~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~tD 325 (377)
T PRK08588 247 EFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLS-LDIYSNHRPVASDKDSKLVQLAKDVAKSYVGQDIPLSAIPGATD 325 (377)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceE-EEEecCCCCcCCCCCCHHHHHHHHHHHHhhCCCCceecCCCccc
Confidence 99999999999999999999999876532 22 11 1112223344555543221 11111 12457899
Q ss_pred ccccccccc-cccccccce
Q 029000 148 FRIFPLRWQ-RHKIKFGRL 165 (200)
Q Consensus 148 f~~~~~~~~-~~~~~fG~~ 165 (200)
+++|....+ ...+.|||+
T Consensus 326 ~~~~~~~~~~ip~i~~Gpg 344 (377)
T PRK08588 326 ASSFLKKKPDFPVIIFGPG 344 (377)
T ss_pred HHHHhhhcCCCCEEEECCC
Confidence 999864321 122346655
No 9
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.70 E-value=1.7e-16 Score=138.68 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=108.2
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccC-CCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVY-GFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
++++|+++|+++|+|.|+.|+||+.++++++.+|+++.... ......+.. ....+.++++|.|+ ||...|+||++|+
T Consensus 206 ~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~ 283 (422)
T PRK06915 206 MWFRLHVKGKAAHGGTRYEGVSAIEKSMFVIDHLRKLEEKR-NDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVI 283 (422)
T ss_pred EEEEEEEEeeccccCCCCcCcCHHHHHHHHHHHHHHHHHHh-ccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEE
Confidence 58999999999999999999999999999999998752111 100000000 01124589999999 9999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--------cccccccc--CcccccCCCccccccc----eeeecC-----C
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN--------IEKLDTRG--PVSKYVLPDENIRGRH----VLSLHY-----L 141 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--------v~~~~~~~--~~~~~~~~d~~l~~~~----~~~~~~-----~ 141 (200)
+.+|+|++|.++.+++.++|++.+++.+.. ++ +.... ..+..++.|+++...+ ....+. .
T Consensus 284 ~~~d~R~~p~~~~~~v~~~i~~~l~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~d~~lv~~l~~a~~~~~G~~~~~~~ 362 (422)
T PRK06915 284 LEGRCGIAPNETIEAAKEEFENWIAELNDVDEWFVEHPVE-VEWFGARWVPGELEENHPLMTTLEHNFVEIEGNKPIIEA 362 (422)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhccChhhhcCCce-EEeecccCCcccCCCCCHHHHHHHHHHHHHhCCCCeece
Confidence 999999999999999999999998876542 21 11111 1122345566543221 111111 2
Q ss_pred CCccccccccccccccccccccce
Q 029000 142 TLGRDDFRIFPLRWQRHKIKFGRL 165 (200)
Q Consensus 142 ~~~~eDf~~~~~~~~~~~~~fG~~ 165 (200)
..++.|+++|...+....+-|||+
T Consensus 363 ~~g~tD~~~~~~~~giP~v~fGpg 386 (422)
T PRK06915 363 SPWGTDGGLLTQIAGVPTIVFGPG 386 (422)
T ss_pred eeeeccHHHHhccCCCCEEEECCC
Confidence 346799999986422223556664
No 10
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.69 E-value=1.2e-16 Score=139.09 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=99.9
Q ss_pred eEEEEEEeeecCCcCC-CC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~-P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
++++|+++|+++|+|. |+ .|+|||.++++++.+|+++.. ... ...++++|.++.++...|+||++|
T Consensus 215 ~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~-~~~-----------~~~~~~vg~i~ggg~~~NvVP~~a 282 (412)
T PRK12893 215 RWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAA-ALA-----------PDGVATVGRLRVEPNSRNVIPGKV 282 (412)
T ss_pred EEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHH-hcC-----------CCceEEEEEEEeeCCCceEECCee
Confidence 6899999999999885 84 799999999999999987532 211 135789999994457999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce----e----eecCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV----L----SLHYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~----~----~~~~~~~~~eDf 148 (200)
++++|+|++++++.+++.++|++++++.+.. ++ ++... ...++...|+.+...+. . .......|+.|+
T Consensus 283 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~~l~~~l~~~~~~~g~~~~~~~~~g~tD~ 361 (412)
T PRK12893 283 VFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVETV-WDFPPVPFDPALVALVEAAAEALGLSHMRMVSGAGHDA 361 (412)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCccccCCccHHHH
Confidence 9999999999999999999999999876543 22 11111 12233444554322111 0 011134577899
Q ss_pred cccccc
Q 029000 149 RIFPLR 154 (200)
Q Consensus 149 ~~~~~~ 154 (200)
++|...
T Consensus 362 ~~~~~~ 367 (412)
T PRK12893 362 MFLARV 367 (412)
T ss_pred HHHHhh
Confidence 998653
No 11
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.68 E-value=4.2e-16 Score=135.93 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=100.5
Q ss_pred eEEEEEEeeecCCcC-CC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas-~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
++++|+++|+++|+| .| +.|+|||..+++++.+|+++..+. . .+.++++|.++.++...|+||++|
T Consensus 216 ~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~-----------~~~~~~~g~i~~g~~~~NvIP~~a 283 (413)
T PRK09290 216 RRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-G-----------PDLVATVGRLEVKPNSVNVIPGEV 283 (413)
T ss_pred EEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-C-----------CCeEEEEEEEEEcCCCCeEECCEE
Confidence 689999999999988 68 589999999999999998752211 1 135788999994457999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----ee----eecCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VL----SLHYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~----~~~~~~~~~eDf 148 (200)
++.+|+|++++++.+++.++|++.+++.+.. ++ ++... ...++...|+++...+ .. .......|+.|+
T Consensus 284 ~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~~-~~~~~~~~d~~lv~~l~~a~~~~g~~~~~~~~~g~tDa 362 (413)
T PRK09290 284 TFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIELI-SRRPPVPFDPGLVAALEEAAERLGLSYRRLPSGAGHDA 362 (413)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE-ecCCCccCCHHHHHHHHHHHHHcCCCccccCCccchHH
Confidence 9999999999999999999999999876432 22 11111 1123344565533211 00 111234578999
Q ss_pred ccccccc
Q 029000 149 RIFPLRW 155 (200)
Q Consensus 149 ~~~~~~~ 155 (200)
++|...+
T Consensus 363 ~~~~~~i 369 (413)
T PRK09290 363 QILAAVV 369 (413)
T ss_pred HHHhccC
Confidence 9995443
No 12
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.66 E-value=3.5e-16 Score=136.41 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=99.8
Q ss_pred eEEEEEEeeecCCcCC-CC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~-P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
+|++|+++|+++|+|. |+ .+.|||..+++++.+|+++. .... .+.++++|.++.++...|+||++|
T Consensus 217 ~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~-~~~~-----------~~~~~~~g~i~~gg~~~NvIP~~a 284 (414)
T PRK12890 217 RRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRA-RALL-----------HDLVATVGRLDVEPNAINVVPGRV 284 (414)
T ss_pred EEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHH-HhcC-----------CCeEEEEEEEEECCCCceEECCeE
Confidence 6899999999999985 85 45899999999999998853 2211 236789999994468999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----ee----eecCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VL----SLHYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~----~~~~~~~~~eDf 148 (200)
++.+|+|++++++.+++.++|++.+++.+.. ++ ++... ..+++...|+++...+ .. .......|+.|+
T Consensus 285 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~g~tDa 363 (414)
T PRK12890 285 VFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELERL-SRSEPVPCDPALVDAVEAAAARLGYPSRRMPSGAGHDA 363 (414)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe-ecCCCcCCCHHHHHHHHHHHHHcCCCceecCCcccHHH
Confidence 9999999999999999999999998876543 22 12111 1233445555532211 00 001134578999
Q ss_pred cccccc
Q 029000 149 RIFPLR 154 (200)
Q Consensus 149 ~~~~~~ 154 (200)
++|...
T Consensus 364 ~~~~~~ 369 (414)
T PRK12890 364 AAIARI 369 (414)
T ss_pred HHHHhh
Confidence 999653
No 13
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.65 E-value=6.8e-16 Score=134.37 Aligned_cols=140 Identities=17% Similarity=0.147 Sum_probs=99.5
Q ss_pred eEEEEEEeeecCCcCC-CC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~-P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
++++|+++|+++|+|. |+ .|.|||..+++++.+++++. ... ..+.++++|.++.++...|+||++|
T Consensus 216 ~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~-~~~-----------~~~~~~~vg~i~gg~~~~NvIP~~a 283 (412)
T PRK12892 216 WQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHF-PRV-----------CGPAVVTVGRVALDPGSPSIIPGRV 283 (412)
T ss_pred eEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH-Hhc-----------CCCcEEEEEEEEecCCCCeEECCeE
Confidence 6899999999999875 65 67999999999999998742 211 1236889999993347999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----ee----eecCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VL----SLHYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~----~~~~~~~~~eDf 148 (200)
++++|+|++++++.+++.++|++.++..+.. ++ ++... ..+++...|+++...+ .. .......|+.|+
T Consensus 284 ~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~~~-~~~~~~~~d~~lv~~~~~a~~~~g~~~~~~~~~g~tDa 362 (412)
T PRK12892 284 EFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVDRI-AEYAPAPCDAALVDALRAAAEAAGGPYLEMPSGAGHDA 362 (412)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCccccCcchHHHH
Confidence 9999999999999999999999999876433 22 11111 1223344555543221 11 001234577999
Q ss_pred cccccc
Q 029000 149 RIFPLR 154 (200)
Q Consensus 149 ~~~~~~ 154 (200)
++|...
T Consensus 363 ~~~~~~ 368 (412)
T PRK12892 363 QNMARI 368 (412)
T ss_pred HHHHhH
Confidence 998654
No 14
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.65 E-value=9.9e-16 Score=130.55 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=83.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|||.|+.|.||+..+++++.++++......... +.....+++++.++ +|...|+||++|++
T Consensus 168 ~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~i~-gG~~~nviP~~a~~ 240 (352)
T PRK13007 168 LRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVD------GLTYREGLNAVRIS-GGVAGNVIPDECVV 240 (352)
T ss_pred EEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccC------CCCccceeEeEeEe-cCCcCccCCCeEEE
Confidence 689999999999999999999999999999999987421111100 11113578899999 99999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
++|+|++|+++.+++.++|++.+++.+
T Consensus 241 ~~diR~~p~~~~~~v~~~i~~~~~~~~ 267 (352)
T PRK13007 241 NVNYRFAPDRSLEEALAHVREVFDGFA 267 (352)
T ss_pred EEEEeeCCCCCHHHHHHHHHHHhcccc
Confidence 999999999999999999999887654
No 15
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.65 E-value=5.1e-16 Score=133.60 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=103.8
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|.||+..+++++.+|+++. ........ ........+++++.++ +|...|+||++|++
T Consensus 180 ~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~-~~~~~~~~--~~~~~~~~t~~i~~i~-gG~~~nviP~~~~~ 255 (375)
T TIGR01910 180 IWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELE-EHIYARNS--YGFIPGPITFNPGVIK-GGDWVNSVPDYCEF 255 (375)
T ss_pred EEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHH-HHhhhccc--ccccCCCccccceeEE-CCCCcCcCCCEEEE
Confidence 68999999999999999999999999999999998752 11111100 0001234688999999 99999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-cccc-ccCc-ccccCCCccccccc----eeeec-----CCCCcccc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDT-RGPV-SKYVLPDENIRGRH----VLSLH-----YLTLGRDD 147 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~-~~~~-~~~~~~d~~l~~~~----~~~~~-----~~~~~~eD 147 (200)
.+|+|+.+.++.+++.++|++++++.+.. ++ ++.. ...+ +...+.|+++...+ ...++ ....|+.|
T Consensus 256 ~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~tD 335 (375)
T TIGR01910 256 SIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYENEPVVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLVSTGGTD 335 (375)
T ss_pred EEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhCCCeeeecCCcCCCCCCHHHHHHHHHHHHHhCCCCeEeeeccchh
Confidence 99999999999999999999999876532 21 1111 1111 23455565533221 11111 12457899
Q ss_pred cccccc
Q 029000 148 FRIFPL 153 (200)
Q Consensus 148 f~~~~~ 153 (200)
++++..
T Consensus 336 ~~~~~~ 341 (375)
T TIGR01910 336 ARFLRK 341 (375)
T ss_pred HHHHHH
Confidence 999965
No 16
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.65 E-value=4.7e-16 Score=135.20 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=99.6
Q ss_pred eEEEEEEeeecCCcCCCC--CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGLPH--KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~--~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
+|++|+++|+++|++.|+ .|+||+.++++++.+|+++..+. . .+.+.++|.++.++...|+||++|
T Consensus 208 ~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~-----------~~~~~~vg~i~~g~~~~NvVP~~a 275 (401)
T TIGR01879 208 RWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-G-----------DPTVGTVGKVEARPNGVNVIPGKV 275 (401)
T ss_pred EEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C-----------CCeEEEEEEEEecCCceEEECCEE
Confidence 689999999999998644 57999999999999998753221 1 124678999994457899999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----eee----ecCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VLS----LHYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~~----~~~~~~~~eDf 148 (200)
++.+|+|++|+++.+++.++|++.+++.+.. ++ ++... ...++...|+++...+ ... ......++.|+
T Consensus 276 ~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~lv~~l~~a~~~~g~~~~~~~~~ggtDa 354 (401)
T TIGR01879 276 TFTLDLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIERW-MDEEPVPCSEELVAALTELCERLGYNARVMVSGAGHDA 354 (401)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEEEe-ecCCCcCCCHHHHHHHHHHHHHcCCCccccccchHHHH
Confidence 9999999999999999999999999876543 22 11111 1233455666543222 100 01124578999
Q ss_pred cccccc
Q 029000 149 RIFPLR 154 (200)
Q Consensus 149 ~~~~~~ 154 (200)
++|...
T Consensus 355 ~~~~~~ 360 (401)
T TIGR01879 355 QILAPI 360 (401)
T ss_pred HHHHhh
Confidence 999653
No 17
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.64 E-value=1.8e-15 Score=130.04 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=81.0
Q ss_pred eEEEEEEeeecCCcCCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
++++|+++|+++|+|.| +.|+|||..+++++.++.+.......+. .....+.++++|.|+ ||...|+||++|+
T Consensus 168 ~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~t~~vg~i~-GG~~~NvVP~~a~ 241 (364)
T PRK08737 168 SSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHAR-----FGGLTGLRFNIGRVE-GGIKANMIAPAAE 241 (364)
T ss_pred EEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhc-----cCCCCCCceEEeeEe-cCCCCCcCCCceE
Confidence 68999999999999998 5899999999999988765322111100 000123589999999 9999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
+++|+|++|+++.+++.++|+++++..
T Consensus 242 ~~~d~R~~p~~~~e~v~~~i~~~~~~~ 268 (364)
T PRK08737 242 LRFGFRPLPSMDVDGLLATFAGFAEPA 268 (364)
T ss_pred EEEEeeeCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999998877653
No 18
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.64 E-value=9.2e-16 Score=131.72 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=105.5
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCC-ccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~NviP~~a~ 80 (200)
++++++++|+++|+|.|+.|.||+..+++++..|++..... . .....+.+++++.++ +|. ..|++|++|+
T Consensus 178 ~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~---~-----~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~ 248 (370)
T TIGR01246 178 ITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDE---G-----NEFFPPTSLQITNIH-AGTGANNVIPGELY 248 (370)
T ss_pred EEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhcc---C-----CccCCCCceEeeeee-cCCCCCcccCCceE
Confidence 57999999999999999999999999999999987642111 0 012345689999999 664 7899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeec-----CCCCcccccccc
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLH-----YLTLGRDDFRIF 151 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~-----~~~~~~eDf~~~ 151 (200)
+.+|+|++++++.+++.++|++.++..+..++ +......+++..+|+++...+ ...++ ....|+.|++++
T Consensus 249 ~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~-v~~~~~~~p~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~ 327 (370)
T TIGR01246 249 VQFNLRFSTEVSDEILKQRVEAILDQHGLDYD-LEWSLSGEPFLTNDGKLIDKAREAIEETNGIKPELSTGGGTSDGRFI 327 (370)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHcCCCEE-EEEecCCcceeCCCCHHHHHHHHHHHHHhCCCCceecCCCCchHHHH
Confidence 99999999999999999999999887544433 111111123323355432221 11111 123456898888
Q ss_pred cccccccccccccee
Q 029000 152 PLRWQRHKIKFGRLK 166 (200)
Q Consensus 152 ~~~~~~~~~~fG~~~ 166 (200)
.. .....+.|||+.
T Consensus 328 ~~-~g~p~~~~Gp~~ 341 (370)
T TIGR01246 328 AL-MGAEVVEFGPVN 341 (370)
T ss_pred HH-cCCCEEEecCCc
Confidence 54 334455677753
No 19
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.64 E-value=1.3e-15 Score=130.87 Aligned_cols=101 Identities=26% Similarity=0.351 Sum_probs=83.7
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCC-ccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~NviP~~a~ 80 (200)
++++|+++|+++|+|.|+.|.||+..+++++.+|+....+.. . ....+.+++++.|+ +|. ..|++|++|+
T Consensus 181 ~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~--~------~~~~~~~~~i~~i~-~G~~~~nvip~~~~ 251 (375)
T PRK13009 181 LTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEG--N------EFFPPTSLQITNID-AGTGATNVIPGELE 251 (375)
T ss_pred EEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCC--C------ccCCCceEEEEEEe-cCCCCCcccCCcEE
Confidence 589999999999999999999999999999999987421110 0 11234688999999 554 7899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINENI 111 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v 111 (200)
+.+|+|+++.++.+++.++|++.+++.+.++
T Consensus 252 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~ 282 (375)
T PRK13009 252 AQFNFRFSTEHTAESLKARVEAILDKHGLDY 282 (375)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 9999999999999999999999998654443
No 20
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.63 E-value=2.1e-15 Score=130.41 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=84.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeE--EecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~--i~~gg~~~NviP~~a 79 (200)
.+++|+++|+++|++.|+.|.||+..+++++.+|++...+....... ........+.++|. ++ +|...|++|++|
T Consensus 185 ~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a 261 (394)
T PRK08651 185 VWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKYEY--DDERGAKPTVTLGGPTVE-GGTKTNIVPGYC 261 (394)
T ss_pred EEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhccccc--cccccCCCceeecceeee-CCCCCCccCCEE
Confidence 58999999999999999999999999999999998642111110000 00011235678888 88 899999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
++.+|+|++++.+.+++.++|++.+++.+..
T Consensus 262 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 292 (394)
T PRK08651 262 AFSIDRRLIPEETAEEVRDELEALLDEVAPE 292 (394)
T ss_pred EEEEEeeeCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999876543
No 21
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.63 E-value=1.4e-15 Score=138.10 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=101.0
Q ss_pred eEEEEEEeeecCCcCCCC--CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGLPH--KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~--~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
.+++|+++|+++|||.|+ .+.||+..+++++..+++.. .. . ...+.++|.++..|+..|+||++|
T Consensus 393 ~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~-~~-~-----------~~~v~tVG~i~~~Gg~~NVIP~~a 459 (591)
T PRK13590 393 VRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRA-AQ-D-----------GDSVGTVGMLEVPGGSINVVPGRC 459 (591)
T ss_pred EEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHH-hc-C-----------CCcEEEEEEEEECCCCCceECCEE
Confidence 689999999999999644 36899999999999998742 21 1 124678999986577999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce-------ee-ecCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV-------LS-LHYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~-------~~-~~~~~~~~eDf 148 (200)
++++|+|+++.++.+.+.+++++.+++.+.. ++ ++... ..++++.+|+.+...+. .. ......|++|+
T Consensus 460 ~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~~-~~~~~~~~d~~lv~~~~~aa~~~G~~~~~~~sggg~Da 538 (591)
T PRK13590 460 RFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEET-MRAAAAPSAPAWQQRWEAAVAALGLPLFRMPSGAGHDA 538 (591)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEe-ecCCCcCCCHHHHHHHHHHHHHcCCCcccCCcchhHHH
Confidence 9999999999999999999898888877543 22 22211 22445566765432211 11 11235678999
Q ss_pred ccccccc
Q 029000 149 RIFPLRW 155 (200)
Q Consensus 149 ~~~~~~~ 155 (200)
++|...+
T Consensus 539 ~~~a~~~ 545 (591)
T PRK13590 539 MKLHEIM 545 (591)
T ss_pred HHHHHHC
Confidence 9997643
No 22
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=137.04 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=100.6
Q ss_pred eEEEEEEeeecCCcCCC--CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGLP--HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P--~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
.+++|+++|+++|++.| +.++||+.++++++..++++..+ .+ ....+.++|.|+.+++..|+||++|
T Consensus 393 ~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~-~~----------~~~~v~tVG~I~~~~ga~NvIP~~a 461 (591)
T PRK13799 393 ARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ-DQ----------HASLVATMGQLNVPSGSTNVIPGRC 461 (591)
T ss_pred eEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh-cC----------CCCcEEEEEEEEecCCCCceECCEE
Confidence 68999999999999964 35899999999999999885322 11 1225788999985556899999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce-------eee-cCCCCccccc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV-------LSL-HYLTLGRDDF 148 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~-------~~~-~~~~~~~eDf 148 (200)
++++|+|+++.++.+.+.+++++.+++.+.. ++ ++... ...+++.+|+.+...+. ... ...+.+++|+
T Consensus 462 ~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~~-~~~~~~~~d~~lv~~~~~a~~~~G~~~~~~~sgag~Da 540 (591)
T PRK13799 462 QFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAELA-MKAAAAPCAPELMKQLEAATDAAGVPLFELASGAGHDA 540 (591)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCceecCcchHHHH
Confidence 9999999999999999888888887776543 22 11111 22344666665432211 111 1234678999
Q ss_pred ccccccc
Q 029000 149 RIFPLRW 155 (200)
Q Consensus 149 ~~~~~~~ 155 (200)
++|....
T Consensus 541 ~~~a~~~ 547 (591)
T PRK13799 541 MKIAEIM 547 (591)
T ss_pred HHHHhhC
Confidence 9997654
No 23
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.61 E-value=6.1e-15 Score=126.08 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=84.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCC-CCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
++++|+++|+++|++.|+.|.||+..+++++.+|+++. ..+..... ...+. ...+++++.++ +|...|+||++|+
T Consensus 169 ~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~~~--~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~ 244 (364)
T TIGR01892 169 ASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLA-DTLLREDL--DEGFTPPYTTLNIGVIQ-GGKAVNIIPGACE 244 (364)
T ss_pred EEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHH-HHhccCCC--CccCCCCCceEEEeeee-cCCCCcccCCeEE
Confidence 58999999999999999999999999999999998742 11111000 00011 23689999999 8999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
+.+|+|++++++.+++.++|++.+++.+
T Consensus 245 ~~~diR~~p~~~~~~v~~~i~~~~~~~~ 272 (364)
T TIGR01892 245 FVFEWRPIPGMDPEELLQLLETIAQALV 272 (364)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754
No 24
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.61 E-value=6.1e-15 Score=128.89 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=83.4
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCC-CccC-CCCCCceEeeeEEecCCCcc-------
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPK-EQVY-GFETPSTMKPTQWSYPGGGI------- 72 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~t~~~g~i~~gg~~~------- 72 (200)
++++|+++|+++|+|.|+.|+||+..+++++.+|++........... .+.. ......+++++.|+ +|...
T Consensus 201 ~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~ 279 (427)
T PRK13013 201 WWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTG 279 (427)
T ss_pred EEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccc
Confidence 67999999999999999999999999999999997642111110000 0000 00124688999999 77666
Q ss_pred ---ceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000 73 ---NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109 (200)
Q Consensus 73 ---NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~ 109 (200)
|+||++|++++|+|++++++.+++.++|++.+++.+.
T Consensus 280 ~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~ 319 (427)
T PRK13013 280 LPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKR 319 (427)
T ss_pred cccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987643
No 25
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.61 E-value=5.2e-15 Score=128.34 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=81.3
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|+|||..+++++.+|++.. ..+... .+....++++|.|+.+++..|+||++|++
T Consensus 182 ~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~------~~~~~~~~~v~~i~~g~~~~nviP~~~~~ 254 (395)
T TIGR03526 182 MEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLN-ANLVED------PFLGKGTLTVSEIFFSSPSRCAVADGCTI 254 (395)
T ss_pred EEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhh-hhhcCC------cccCccceeeeeeecCCCCCCccCCeEEE
Confidence 68999999999999999999999999999999998742 211100 01223688999998333489999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
++|+|++++++.+++.++|++.++..
T Consensus 255 ~~d~R~~~~~~~~~~~~~i~~~~~~~ 280 (395)
T TIGR03526 255 SIDRRLTWGETWEYALEQIRNLPAVQ 280 (395)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987653
No 26
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.60 E-value=7.7e-15 Score=126.49 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=85.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|.||+..+++++.+++.+. ..+......+... ....+++++.|+ +|...|+||++|++
T Consensus 182 ~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~-~~~~~~~~~~~~~-~~~~t~~i~~i~-gg~~~NvVP~~~~~ 258 (383)
T PRK05111 182 MSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLR-DELQERYHNPAFT-VPYPTLNLGHIH-GGDAPNRICGCCEL 258 (383)
T ss_pred EEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHH-HHHhccCCCccCC-CCCCceeEeeee-cCCcCcccCCceEE
Confidence 68999999999999999999999999999999998642 1111110001101 124689999999 89999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
.+|+|++++++.+++.++|++.+++.+..
T Consensus 259 ~~diR~~p~~~~~~v~~~i~~~i~~~~~~ 287 (383)
T PRK05111 259 HFDIRPLPGMTLEDLRGLLREALAPVSER 287 (383)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999876543
No 27
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.60 E-value=4.1e-15 Score=126.83 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=101.9
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|||.|+ .||+..+++++.++.+. ... ....++++|.++ +|...|+||++|++
T Consensus 161 ~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~-~~~------------~~~~t~~~~~i~-gG~~~NvvP~~a~~ 224 (346)
T PRK00466 161 IQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQ-PEN------------YDKPSIVPTIIR-AGESYNVTPAKLYL 224 (346)
T ss_pred EEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhc-ccc------------CCCCcceeeEEe-cCCcCcccCCceEE
Confidence 689999999999999986 59999999999988653 111 123578999999 89999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccceee---ecC-----CCCcccccccccc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLS---LHY-----LTLGRDDFRIFPL 153 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~~---~~~-----~~~~~eDf~~~~~ 153 (200)
++|+|++++++.+++.++|++.+++. +++... ..++.+.+.|+++...+... .+. ...|+-|.++|..
T Consensus 225 ~~diR~~p~~~~~~v~~~i~~~~~~~--~~~~~~--~~~~~~~~~~~~lv~~l~~a~~~~g~~~~~~~~~g~tD~~~~~~ 300 (346)
T PRK00466 225 HFDVRYAINNKRDDLISEIKDKFQEC--GLKIVD--ETPPVKVSINNPVVKALMRALLKQNIKPRLVRKAGTSDMNILQK 300 (346)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhC--cEeecc--CCCCcccCCCCHHHHHHHHHHHHhCCCceEEecCCcCcHHHHHH
Confidence 99999999999999999999988752 222111 12233455556543322110 010 1235678888865
Q ss_pred cccccccccccee
Q 029000 154 RWQRHKIKFGRLK 166 (200)
Q Consensus 154 ~~~~~~~~fG~~~ 166 (200)
.. ...+.|||+.
T Consensus 301 ~~-~~~v~fGpg~ 312 (346)
T PRK00466 301 IT-TSIATYGPGN 312 (346)
T ss_pred hC-CCEEEECCCC
Confidence 43 4556788754
No 28
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.60 E-value=8.8e-15 Score=126.14 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=82.6
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCC-CCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
.+++|+++|+++|+|.|+.|.||+..+++++..|++.. ..+....+ ....+. ...+++++.++ +|...|+||++|+
T Consensus 178 ~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~~~-~~~~~~~~~~t~~i~~i~-gG~~~nviP~~a~ 254 (385)
T PRK07522 178 AAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLA-DRLAAPGP-FDALFDPPYSTLQTGTIQ-GGTALNIVPAECE 254 (385)
T ss_pred EEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHH-HHHhhcCC-CCcCCCCCcceeEEeeee-cCccccccCCceE
Confidence 58999999999999999999999999999999998752 11110000 000011 12578999999 8999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDD 106 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~ 106 (200)
+.+|+|+++.++.+++.++|++.+++
T Consensus 255 ~~~diR~~~~~~~~~i~~~i~~~i~~ 280 (385)
T PRK07522 255 FDFEFRNLPGDDPEAILARIRAYAEA 280 (385)
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999877
No 29
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.59 E-value=1.5e-14 Score=125.33 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=81.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|.||+..+++++..|++.. ...... ......++++|.|+.++...|+||++|++
T Consensus 182 ~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~-~~~~~~------~~~~~~t~~v~~i~~g~~~~NviP~~~~~ 254 (395)
T TIGR03320 182 MEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLN-ANLVED------PFLGKGTLTVSEIFFSSPSRCAVADGCTI 254 (395)
T ss_pred EEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHH-HhhcCC------cccCcCceeeeeeecCCCCcCccCCEEEE
Confidence 68999999999999999999999999999999998742 111100 01223588899999333489999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
.+|+|++++++.+++.++|++.+...
T Consensus 255 ~~diR~~p~~~~~~i~~~i~~~~~~~ 280 (395)
T TIGR03320 255 SIDRRLTWGETWEYALEQIRNLPAVQ 280 (395)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999987653
No 30
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.59 E-value=6.4e-15 Score=125.18 Aligned_cols=116 Identities=23% Similarity=0.312 Sum_probs=88.4
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|.||+.++++++.+|+++. ...... + . .+++++.++ +|...|++|++|++
T Consensus 156 ~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~-~~~~~~-------~-~-~~~~~~~i~-gg~~~nviP~~~~~ 224 (347)
T PRK08652 156 LEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELL-KALGKY-------F-D-PHIGIQEII-GGSPEYSIPALCRL 224 (347)
T ss_pred EEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHH-Hhhhcc-------c-C-CCCcceeee-cCCCCCccCCcEEE
Confidence 68999999999999999999999999999999998752 211100 1 1 245667788 88899999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENI 130 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l 130 (200)
++|+|+++.++.+++.+++++.+++...+++ +... .++.+.++|+++
T Consensus 225 ~~diR~~~~~~~~~v~~~i~~~~~~~~v~~~-~~~~-~~~~~~~~~~~l 271 (347)
T PRK08652 225 RLDARIPPEVEVEDVLDEIDPILDEYTVKYE-YTEI-WDGFELDEDEEI 271 (347)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCceEE-Eecc-CCcccCCCCCHH
Confidence 9999999999999999999999976544433 1111 123345566654
No 31
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.58 E-value=1.1e-14 Score=127.56 Aligned_cols=163 Identities=12% Similarity=0.192 Sum_probs=108.2
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCC-CCccC-CCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHP-KEQVY-GFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~-~~~~~-~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
++++|+++|+++|+|.|+.|.||+..+++++.+|++.. ..+.... ..+.. +...+.+++++.|+ +|...|+||++|
T Consensus 210 ~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~ 287 (427)
T PRK06837 210 IWFRLRVRGAPVHVREAGTGANAIDAAYHLIQALRELE-AEWNARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWC 287 (427)
T ss_pred EEEEEEEEeeccccCCcccCcCHHHHHHHHHHHHHHHH-HHHhhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEE
Confidence 68999999999999999999999999999999998742 1111100 00000 11234588999999 899999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc-------ccc--cccCcccccCCCccccccc----eeeec-----CC
Q 029000 80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE-------KLD--TRGPVSKYVLPDENIRGRH----VLSLH-----YL 141 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~-------~~~--~~~~~~~~~~~d~~l~~~~----~~~~~-----~~ 141 (200)
++.+++|+.|+++.+++.++|++.+++...+.. .+. ....++...+.|+++...+ ...++ ..
T Consensus 288 ~~~~~ir~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~~~~~~ 367 (427)
T PRK06837 288 DLDCRIAIYPGVTAADAQAEIEACLAAAARDDRFLSNNPPEVVWSGFLAEGYVLEPGSEAEAALARAHAAVFGGPLRSFV 367 (427)
T ss_pred EEEEEEeECCCCCHHHHHHHHHHHHHHHHhcChhhhhCCCeEEEEecccCCcCCCCCCHHHHHHHHHHHHHhCCCCeeeE
Confidence 999999999999999999999999987543310 111 1112223444555533221 11111 12
Q ss_pred CCcccccccccccccccccccccee
Q 029000 142 TLGRDDFRIFPLRWQRHKIKFGRLK 166 (200)
Q Consensus 142 ~~~~eDf~~~~~~~~~~~~~fG~~~ 166 (200)
..|+.|.+++........+.|||+.
T Consensus 368 ~~g~tDa~~~~~~~gip~v~~Gp~~ 392 (427)
T PRK06837 368 TTAYTDTRFYGLYYGIPALCYGPSG 392 (427)
T ss_pred EeeccchHHHhccCCCCEEEECCCC
Confidence 3467888888643333345688864
No 32
>PRK08262 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=129.42 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=102.4
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcc-cCC-----------CC---------------CC------
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK-DFP-----------PH---------------PK------ 48 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~-~~~-----------~~---------------~~------ 48 (200)
++++|+++|+++|||.|+. .||+..+++++.+|++.... .+. .. ..
T Consensus 242 ~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (486)
T PRK08262 242 ATLELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVL 320 (486)
T ss_pred EEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHH
Confidence 6889999999999999999 99999999999999763100 000 00 00
Q ss_pred --CccCCCCCCceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCC
Q 029000 49 --EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 126 (200)
Q Consensus 49 --~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (200)
..........+++++.|+ ||...|+||++|++.+|+|++++++.+++.++|++.+++...+++.......++.+++.
T Consensus 321 ~~~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 399 (486)
T PRK08262 321 AKSPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADDRVEIEVLGGNSEPSPVSST 399 (486)
T ss_pred hcCCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCC
Confidence 000001124688999999 88899999999999999999999999999999999987653333311111122344556
Q ss_pred Cccccccc----eeeec------CCCCcccccccccccc
Q 029000 127 DENIRGRH----VLSLH------YLTLGRDDFRIFPLRW 155 (200)
Q Consensus 127 d~~l~~~~----~~~~~------~~~~~~eDf~~~~~~~ 155 (200)
|+++...+ ...++ ....|++|+++|...+
T Consensus 400 ~~~lv~~l~~a~~~~~g~~~~~~~~~~g~tDa~~~~~~~ 438 (486)
T PRK08262 400 DSAAYKLLAATIREVFPDVVVAPYLVVGATDSRHYSGIS 438 (486)
T ss_pred CCHHHHHHHHHHHHHCCCCccccceecccccHHHHHHhc
Confidence 66543221 11121 1245789999987543
No 33
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.55 E-value=6.8e-14 Score=120.64 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=79.9
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|.||+..+++++.+|+++........ +.....+++++.|+ ||...|+||++|++
T Consensus 182 ~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~------~~~~~~t~~v~~I~-GG~~~nvVP~~a~~ 254 (373)
T TIGR01900 182 IRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNID------GLDYREGLNATFCE-GGKANNVIPDEARM 254 (373)
T ss_pred EEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhccccccc------CCcccceEEEEEEe-CCCCCcccCCeEEE
Confidence 689999999999999999999999999999999987421111100 01123578999999 89999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYV 104 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~ 104 (200)
.+|+|++|+++.+++.++|++.+
T Consensus 255 ~~diR~~p~~~~e~~~~~i~~~~ 277 (373)
T TIGR01900 255 HLNFRFAPDKDLAEAKALMMGAD 277 (373)
T ss_pred EEEEecCCCcCHHHHHHHHHhhh
Confidence 99999999999999999997654
No 34
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.55 E-value=2.7e-14 Score=123.57 Aligned_cols=105 Identities=27% Similarity=0.405 Sum_probs=81.8
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|+|.|+.|+||+..+++++..+++.+...+....+ ..+ ....+++++.+..++...|+||++|++
T Consensus 197 ~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~~~nvvp~~~~~ 273 (400)
T PRK13983 197 LWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEKFNAKDP--LFD-PPYSTFEPTKKEANVDNINTIPGRDVF 273 (400)
T ss_pred EEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc--ccC-CCCcccccceeecCCcCCcccCCeeEE
Confidence 68999999999999999999999999999999998732222221100 000 011356678887334689999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINE 109 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~ 109 (200)
++|+|++++++.+++.++|++.+++.+.
T Consensus 274 ~~diR~~p~~~~~~v~~~l~~~~~~~~~ 301 (400)
T PRK13983 274 YFDCRVLPDYDLDEVLKDIKEIADEFEE 301 (400)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987643
No 35
>PRK13004 peptidase; Reviewed
Probab=99.53 E-value=6.3e-14 Score=121.71 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=79.7
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|++.|+.|.||+..+++++..|+.. ...+... ......+++++.+..++...|++|++|++
T Consensus 184 ~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~-~~~~~~~------~~~~~~~~~v~~i~~g~~~~nvvP~~~~~ 256 (399)
T PRK13004 184 MEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEEL-NPNLKED------PFLGKGTLTVSDIFSTSPSRCAVPDSCAI 256 (399)
T ss_pred EEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhh-ccccccC------CcCCCceEEEeeeecCCCCCCccCCEEEE
Confidence 6899999999999999999999999999999999874 2111110 11223578899998444689999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVD 105 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~ 105 (200)
.+|+|+++.++.+++.++++++.+
T Consensus 257 ~~diR~~~~~~~~~v~~~i~~~~~ 280 (399)
T PRK13004 257 SIDRRLTVGETWESVLAEIRALPA 280 (399)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999844
No 36
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.53 E-value=2.2e-14 Score=122.71 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=79.2
Q ss_pred eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
++++++++|+++|++ .|+.|+||+..+++++.++... .++ ...++++|.++ +|...|+||++|+
T Consensus 173 ~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~-----------~~~~~~i~~i~-gG~~~nvVP~~~~ 237 (361)
T TIGR01883 173 VKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLG---RID-----------EETTANIGSFS-GGVNTNIVQDEQL 237 (361)
T ss_pred EEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhcccc---CCC-----------Cccccccceee-cCCccCccCCceE
Confidence 589999999999985 7999999999999999887542 111 12567889999 9999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE 109 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~ 109 (200)
+.+|+|+++.++.+.+.++|++.+++.+.
T Consensus 238 ~~~diR~~~~~~~~~~~~~i~~~i~~~~~ 266 (361)
T TIGR01883 238 IVAEARSLSFRKAEAQVQTMRERFEQAAE 266 (361)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988999888876543
No 37
>PRK07338 hypothetical protein; Provisional
Probab=99.49 E-value=1.6e-13 Score=119.13 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=82.7
Q ss_pred eEEEEEEeeecCCcCC-CCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~-P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
++++|+++|+++|+|. |+.|.||+..+++++.+|++. .+. ....++++|.|+ +|...|+||++|+
T Consensus 204 ~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~~l~~l-~~~------------~~~~t~~vg~i~-gG~~~nvVP~~a~ 269 (402)
T PRK07338 204 GNFTIVVTGRAAHAGRAFDEGRNAIVAAAELALALHAL-NGQ------------RDGVTVNVAKID-GGGPLNVVPDNAV 269 (402)
T ss_pred EEEEEEEEeEcccCCCCcccCccHHHHHHHHHHHHHhh-hcc------------CCCcEEEEEEEe-cCCCCceeccccE
Confidence 6899999999999995 899999999999999999874 221 123689999999 8999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
+++|+|+.++++.+++.++|++.+++.+
T Consensus 270 ~~~d~R~~~~~~~~~v~~~i~~~~~~~~ 297 (402)
T PRK07338 270 LRFNIRPPTPEDAAWAEAELKKLIAQVN 297 (402)
T ss_pred EEEEeccCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999998764
No 38
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.47 E-value=2.4e-13 Score=117.99 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=80.6
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhc---ccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE 78 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~ 78 (200)
++++|+++|+++|||.|. +.||+..+++++..|+++.. ..+... +.......+++++|.++ ||...|+||++
T Consensus 193 ~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~---~~~~~~~~~t~~v~~i~-gG~~~nvIP~~ 267 (400)
T TIGR01880 193 WWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSN---PDLAIGDVTSVNLTKLK-GGVQSNVIPSE 267 (400)
T ss_pred EEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcC---ccccccccceeecceec-cCCcCCcCCCc
Confidence 689999999999999875 47999999999988876311 101110 00111123689999999 89999999999
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
|++.+|+|+++.++.+++.++|++.+++..
T Consensus 268 a~~~~diR~~p~~~~~~~~~~i~~~i~~~~ 297 (400)
T TIGR01880 268 AEAGFDIRLAPSVDFEEMENRLDEWCADAG 297 (400)
T ss_pred cEEEEEEeeCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998753
No 39
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.45 E-value=4.9e-13 Score=113.56 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=96.1
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++++++|+++|+|.|. ||+..+..++..|.+.+..... ....+++++.++ +|...|+||++|++
T Consensus 150 ~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~i~-gg~~~nvIP~~a~~ 215 (336)
T TIGR01902 150 LQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQPEN----------YDKPSIVPTIIR-FGESYNDTPAKLEL 215 (336)
T ss_pred EEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhccccC----------CCCCcceeEEEE-ccCCCcCCCceEEE
Confidence 689999999999999885 4899999999988742222111 112467788888 89999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeec----CCCCcccccccccc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLH----YLTLGRDDFRIFPL 153 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~----~~~~~~eDf~~~~~ 153 (200)
++|+|++++++.+++.++|++. ...+++.. ...++...+.|+++...+ ..... ....|+-|.++|..
T Consensus 216 ~idiR~~p~~~~~~~~~~i~~~---~~~~~~~~--~~~~p~~~~~~~~lv~~~~~a~~~~~~~~~~~~~~g~tD~~~~~~ 290 (336)
T TIGR01902 216 HFDLRYPPNNKPEEAIKEITDK---FPICLEIV--DETPPYKVSRNNPLVRAFVRAIRKQGMKPRLKKKTGTSDMNILAP 290 (336)
T ss_pred EEEEeeCCCCCHHHHHHHHHhc---cCceEEEE--eccCceecCCCCHHHHHHHHHHHHcCCCeEEeeccccCccceecc
Confidence 9999999999999998888761 11222211 112223345666543221 10100 11235678888865
Q ss_pred cccccccccccee
Q 029000 154 RWQRHKIKFGRLK 166 (200)
Q Consensus 154 ~~~~~~~~fG~~~ 166 (200)
.+....+.|||+.
T Consensus 291 ~~g~p~v~~Gpg~ 303 (336)
T TIGR01902 291 IWTVPMVAYGPGD 303 (336)
T ss_pred ccCCCeEEECCCC
Confidence 4444555677664
No 40
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.43 E-value=8.1e-13 Score=115.27 Aligned_cols=91 Identities=24% Similarity=0.201 Sum_probs=80.6
Q ss_pred eEEEEEEeeecCCc-CCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHS-GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHa-s~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
++++++++|+++|+ +.|+.|+||+..+++++..|++.. .. ....+++++.++ +|...|+||++|+
T Consensus 211 ~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~-~~------------~~~~t~~~~~i~-gG~~~nvIP~~~~ 276 (410)
T PRK06133 211 ATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLG-DP------------AKGTTLNWTVAK-AGTNRNVIPASAS 276 (410)
T ss_pred EEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhcc-CC------------CCCeEEEeeEEE-CCCCCceeCCccE
Confidence 68999999999997 489999999999999999987741 11 123678999999 8999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDD 106 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~ 106 (200)
+.+|+|+++.++.+++.++|++.+++
T Consensus 277 ~~~diR~~~~~~~~~v~~~i~~~~~~ 302 (410)
T PRK06133 277 AQADVRYLDPAEFDRLEADLQEKVKN 302 (410)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987
No 41
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.43 E-value=9e-13 Score=116.84 Aligned_cols=144 Identities=13% Similarity=0.042 Sum_probs=91.0
Q ss_pred EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHH----------h---HhhcccCCC-CCC-CccCCCCCCceEeeeEEec
Q 029000 3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVI----------Q---TRFYKDFPP-HPK-EQVYGFETPSTMKPTQWSY 67 (200)
Q Consensus 3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l----------~---~~~~~~~~~-~~~-~~~~~~~~~~t~~~g~i~~ 67 (200)
|++|+++|+++|||.|+.|+|||..|++++..+ + +........ ... ..........++++|.|+
T Consensus 256 ~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~- 334 (466)
T TIGR01886 256 SATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD- 334 (466)
T ss_pred EEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccCCCcccccCcCceEEEeEEEE-
Confidence 688999999999999999999999999988873 1 110000000 000 000112345789999999
Q ss_pred CCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCcccccccee----eecC---
Q 029000 68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVL----SLHY--- 140 (200)
Q Consensus 68 gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~----~~~~--- 140 (200)
+|.. | ++|++.+|+|++|+++.+++.++|++.++.. .+++... ....+.+.+.|+++...+.. +.+.
T Consensus 335 gG~~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~~-~~v~~~~-~~~~P~~~~~ds~lv~~l~~a~~~v~G~~~~ 408 (466)
T TIGR01886 335 FDHA-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGGI-VDVTYNG-HFEEPHYVPGSDPLVQTLLKVYEKHTGKKGH 408 (466)
T ss_pred EecC-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhcc-cEEEEec-ccCCCcccCCCCHHHHHHHHHHHHHhCCCCc
Confidence 6644 3 8999999999999999999999999988752 2222111 11223345566664333211 1111
Q ss_pred --CCCcccccccccc
Q 029000 141 --LTLGRDDFRIFPL 153 (200)
Q Consensus 141 --~~~~~eDf~~~~~ 153 (200)
..-++-|.++|..
T Consensus 409 ~~~~~ggTDa~~~~~ 423 (466)
T TIGR01886 409 EVIIGGGTYGRLLER 423 (466)
T ss_pred eeeecCccHHHhccc
Confidence 1234578888864
No 42
>PRK07906 hypothetical protein; Provisional
Probab=99.43 E-value=3.8e-13 Score=117.73 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=73.8
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhccc------------CCC---C--CCC-------------cc
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD------------FPP---H--PKE-------------QV 51 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~------------~~~---~--~~~-------------~~ 51 (200)
++++|+++|+++|||.|+. +||+..+++++..|++..... +.. . .+. ..
T Consensus 192 ~~~~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 270 (426)
T PRK07906 192 AWMRLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARM 270 (426)
T ss_pred EEEEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcc
Confidence 6899999999999999975 999999999999987531100 000 0 000 00
Q ss_pred CCCCCCceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 029000 52 YGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 104 (200)
Q Consensus 52 ~~~~~~~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~ 104 (200)
.......++++|.|+ +|...|+||++|++.+|+|++++++ +++.++|++++
T Consensus 271 ~~~~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~~~~ 321 (426)
T PRK07906 271 VGATLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVDELL 321 (426)
T ss_pred hhhhhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHHHHHHHHHh
Confidence 000013588999999 8889999999999999999999886 67777777765
No 43
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.42 E-value=4.6e-13 Score=114.35 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=97.4
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 81 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~ 81 (200)
++++|+++|+++|||.| |.||+..+++++..|++... ..... .....+.+.+++.++ . ..|++|++|++
T Consensus 161 ~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~-~~~~~-----~~~~~~~~~~i~~i~-~--~~n~iP~~~~~ 229 (348)
T PRK04443 161 LLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFE-ANDGR-----ERVFDQVTPKLVDFD-S--SSDGLTVEAEM 229 (348)
T ss_pred EEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHh-cCccc-----cccccccceeeeEEe-c--CCCCCCceEEE
Confidence 68999999999999988 79999999999999987422 10010 011234567788887 3 46999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeecC----CCCcccccccccc
Q 029000 82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLHY----LTLGRDDFRIFPL 153 (200)
Q Consensus 82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~~----~~~~~eDf~~~~~ 153 (200)
.+|+|++|+++.+++.++|++.+... +++ ... ..++...+.|+++...+ ....+. ...|+-|.++|..
T Consensus 230 ~~d~R~~p~~~~~~i~~~i~~~~~~~--~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tD~~~~~~ 305 (348)
T PRK04443 230 TVGLRLPPGLSPEEAREILDALLPTG--TVT-FTG-AVPAYMVSKRTPLARAFRVAIREAGGTPRLKRKTGTSDMNVVAP 305 (348)
T ss_pred EEEEccCCCCCHHHHHHHHHHhCCCc--EEE-Eec-CCCceecCCCCHHHHHHHHHHHHhcCCcceeccccCCcHHHHhh
Confidence 99999999999999999999987432 222 111 12233345565533221 111111 1235668888754
Q ss_pred cccccccccccee
Q 029000 154 RWQRHKIKFGRLK 166 (200)
Q Consensus 154 ~~~~~~~~fG~~~ 166 (200)
......+.|||+.
T Consensus 306 ~~gip~v~~Gpg~ 318 (348)
T PRK04443 306 AWGCPMVAYGPGD 318 (348)
T ss_pred hcCCCEEEECCCC
Confidence 3223334667654
No 44
>PRK13381 peptidase T; Provisional
Probab=99.40 E-value=7.4e-13 Score=115.21 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=72.5
Q ss_pred eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
.+++|+++|+++|++ .|+.|+|||..+++++.+|++........ ....+++++.++ ++ |++|+
T Consensus 210 ~~~~v~v~Gk~aHa~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~---------~~~~~i~v~~i~-g~------p~~~~ 273 (404)
T PRK13381 210 ASAEITITGVTAHPMSAKGVLVNPILMANDFISHFPRQETPEHTE---------GREGYIWVNDLQ-GN------VNKAK 273 (404)
T ss_pred eEEEEEEEeEecCCCCCcccCcCHHHHHHHHHHhCCccCCCCCCC---------CcccEEEEEeEE-eC------cceEE
Confidence 589999999999987 48999999999999999987641111000 112356677666 32 89999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE 109 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~ 109 (200)
+++|+|+++.++.+++.++|++.+++.+.
T Consensus 274 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~ 302 (404)
T PRK13381 274 LKLIIRDFDLDGFEARKQFIEEVVAKINA 302 (404)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988653
No 45
>PRK05469 peptidase T; Provisional
Probab=99.38 E-value=9.7e-13 Score=114.61 Aligned_cols=92 Identities=17% Similarity=0.083 Sum_probs=72.3
Q ss_pred eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
.+++|+++|+++|++ .|+.|.|||..+++++..|++.. ...... ....++++|.++ +| |++|+
T Consensus 212 ~~~~i~v~Gk~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~--------~~~~~i~~g~i~-gg------p~~~~ 275 (408)
T PRK05469 212 ASAKITIHGVNVHPGTAKGKMVNALLLAADFHAMLPADE-TPETTE--------GYEGFYHLTSIK-GT------VEEAE 275 (408)
T ss_pred eEEEEEEeeecCCCCCCcccccCHHHHHHHHHHhCCCCC-CCCCCC--------CceEEEEEEEEE-Ec------cceEE
Confidence 579999999999986 58999999999999999887531 110000 112345677766 43 89999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE 109 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~ 109 (200)
+++|+|+.+.++.+++.++|++++++.+.
T Consensus 276 i~~diR~~~~e~~e~i~~~i~~~~~~~~~ 304 (408)
T PRK05469 276 LSYIIRDFDREGFEARKALMQEIAKKVNA 304 (408)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 46
>PRK06446 hypothetical protein; Provisional
Probab=99.37 E-value=2.8e-12 Score=112.74 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=79.7
Q ss_pred eEEEEEEee--ecCCcCCCCCCCCHHHHHHHHHHHHhHhhcc----cCCCC-CCC---------------------c---
Q 029000 2 IPWKLHVTG--KLFHSGLPHKAINPLELAMEALKVIQTRFYK----DFPPH-PKE---------------------Q--- 50 (200)
Q Consensus 2 ~~~~I~v~G--~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~----~~~~~-~~~---------------------~--- 50 (200)
++++++++| +++|||.|+.|.||+..+++++.+|.+.... .+... .+. .
T Consensus 182 ~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (436)
T PRK06446 182 LYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFK 261 (436)
T ss_pred EEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCc
Confidence 688999998 9999999999999999999999999753100 00000 000 0
Q ss_pred ---c-------CCCCCCceEeeeEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 51 ---V-------YGFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 51 ---~-------~~~~~~~t~~~g~i~~gg----~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
. .......++++|.++ +| ...|+||++|++++|+|++|+++.+++.++|++.+++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~ 331 (436)
T PRK06446 262 ELKYSDREKIAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKV 331 (436)
T ss_pred cccCCCcccHHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 0 000123688999888 54 46799999999999999999999999999999999874
No 47
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.37 E-value=5.1e-12 Score=110.58 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=79.0
Q ss_pred EEEEEEeee----------cCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCcc
Q 029000 3 PWKLHVTGK----------LFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGI 72 (200)
Q Consensus 3 ~~~I~v~G~----------~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~ 72 (200)
+++++++|+ .+|++.|+.|.||+..+++++.+|+++. ..+......+... ....+++++.|+ ||...
T Consensus 190 ~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~-~~~~~~~~~~~~~-~~~~t~~v~~i~-gG~~~ 266 (421)
T PRK08596 190 TGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELE-RHWAVMKSYPGFP-PGTNTINPAVIE-GGRHA 266 (421)
T ss_pred eEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHH-HHHhhcccCccCC-CCCcceeeeeee-CCCCC
Confidence 456666665 4799999999999999999999998742 1110000000000 123688999999 99999
Q ss_pred ceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 73 NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 73 NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
|+||++|++.+|+|++|+++.+++.++|++.+++.+
T Consensus 267 nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~ 302 (421)
T PRK08596 267 AFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVA 302 (421)
T ss_pred CccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988754
No 48
>PRK06156 hypothetical protein; Provisional
Probab=99.32 E-value=6.4e-12 Score=112.83 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=92.4
Q ss_pred EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhccc----------C-CCCC-CCc------cCCCCCCceEeeeE
Q 029000 3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----------F-PPHP-KEQ------VYGFETPSTMKPTQ 64 (200)
Q Consensus 3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~----------~-~~~~-~~~------~~~~~~~~t~~~g~ 64 (200)
|++|+++|+++|+|.|+.|+|||..+++++.++++.+... . .... ... ........+++++.
T Consensus 300 ~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~ 379 (520)
T PRK06156 300 DVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTV 379 (520)
T ss_pred eEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeE
Confidence 7899999999999999999999999999999987521000 0 0000 000 00111224556666
Q ss_pred EecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----eee
Q 029000 65 WSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VLS 137 (200)
Q Consensus 65 i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~~ 137 (200)
+. +|. ++|++++|+|++++++.+++.++|++.+++.... ++ ++......+...+.|+++...+ ...
T Consensus 380 I~-gg~------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~~gv~ve~~~~~~~p~~~~~d~~lv~~l~~a~~~~ 452 (520)
T PRK06156 380 VG-QDD------KGTEVTVNLRRPVGKTPELLKGEIADALAAWQAKHQVALDIDYYWGEPMVRDPKGPWLKTLLDVFGHF 452 (520)
T ss_pred EE-EeC------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhhcCceEEEeecCCCceeeCCCCHHHHHHHHHHHHH
Confidence 66 332 6899999999999999999999999998865332 22 1111112233445565543222 111
Q ss_pred ecC-----CCCccccccccccccccccccccce
Q 029000 138 LHY-----LTLGRDDFRIFPLRWQRHKIKFGRL 165 (200)
Q Consensus 138 ~~~-----~~~~~eDf~~~~~~~~~~~~~fG~~ 165 (200)
.+. ...|+-|.++|+ ..+.|||.
T Consensus 453 ~G~~~~~~~~~ggTDa~~~~-----~~v~fGP~ 480 (520)
T PRK06156 453 TGLDAKPVAIAGSTNAKLFP-----NAVSFGPA 480 (520)
T ss_pred hCCCCceeeecChhhhhhCC-----ccEEEcCC
Confidence 111 123456777774 25678884
No 49
>PRK09133 hypothetical protein; Provisional
Probab=99.32 E-value=1.1e-11 Score=110.00 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=79.5
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCC--------------------------CC-------
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPH--------------------------PK------- 48 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~--------------------------~~------- 48 (200)
++++|+++|+++|+|.|+ +.|||..+++++.+|++......... .+
T Consensus 227 ~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (472)
T PRK09133 227 ADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIA 305 (472)
T ss_pred EEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHH
Confidence 589999999999999997 58999999999999976310000000 00
Q ss_pred ----CccCCCCCCceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000 49 ----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 106 (200)
Q Consensus 49 ----~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~ 106 (200)
.+........++++|.|+ +|...|+||++|++++|+|++++++.+++.++|++.++.
T Consensus 306 ~~~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~ 366 (472)
T PRK09133 306 LLSADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVAD 366 (472)
T ss_pred HHhcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcC
Confidence 000000123688999999 889999999999999999999999999999999998865
No 50
>PRK07473 carboxypeptidase; Provisional
Probab=99.27 E-value=2.6e-11 Score=104.76 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=73.6
Q ss_pred eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
.+++|+++|+++|++ .|+.|+||+..+++++.+|+++ .. ...++++|.|+ +|...|+||++|+
T Consensus 187 ~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~-~~--------------~~~~~~vg~i~-gg~~~n~VP~~~~ 250 (376)
T PRK07473 187 ARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAM-TT--------------EDCTFSVGIVH-GGQWVNCVATTCT 250 (376)
T ss_pred EEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHh-cC--------------CCceEeEeeEE-cCCCCcCCCCceE
Confidence 689999999999986 7999999999999999999874 11 12578999999 8899999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVD 105 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~ 105 (200)
++++.|....+..+++.+++.+.++
T Consensus 251 ~~~d~r~~~~~~~~~~~~~i~~~~~ 275 (376)
T PRK07473 251 GEALSMAKRQADLDRGVARMLALSG 275 (376)
T ss_pred EEEEEEeCCHhHHHHHHHHHHHhhC
Confidence 9999998877776666666655544
No 51
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.26 E-value=8.6e-11 Score=102.32 Aligned_cols=156 Identities=24% Similarity=0.250 Sum_probs=94.2
Q ss_pred eEEEEEEeeecCCcCC--CCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCC-CceEeeeEEec-------CCCc
Q 029000 2 IPWKLHVTGKLFHSGL--PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSY-------PGGG 71 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~--P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~t~~~g~i~~-------gg~~ 71 (200)
++++|+++|+++|+|. |+.|.|++..+.+.+.++...+.+-.... .. +.+++++.+.. ++..
T Consensus 198 ~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
T COG0624 198 LWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEG--------FDGPLGLNVGLILAGPGASVNGGDK 269 (409)
T ss_pred EEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhccccccc--------ccCCccccccccccCCcccccCCcc
Confidence 6899999999999998 99999955444444444433211110110 11 24455555442 3334
Q ss_pred cceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh--ccc-cccc-ccCcccccCCCccccccc----eeeec----
Q 029000 72 INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE--NIE-KLDT-RGPVSKYVLPDENIRGRH----VLSLH---- 139 (200)
Q Consensus 72 ~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~--~v~-~~~~-~~~~~~~~~~d~~l~~~~----~~~~~---- 139 (200)
.|+||++|++.+|+|+.|..+.+++.+++++.++.... .++ ++.. ....+.+++.++.+...+ ....+
T Consensus 270 ~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~g~~~~ 349 (409)
T COG0624 270 VNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEIEPGLGEPPLPVPGDSPLVAALAEAAEELLGLPPE 349 (409)
T ss_pred CceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEeccccCCccccCCCchHHHHHHHHHHHHhhCCCce
Confidence 69999999999999999999999999999888887644 233 2221 223445666666543221 11111
Q ss_pred -CCCCcccccccccccccccccccccee
Q 029000 140 -YLTLGRDDFRIFPLRWQRHKIKFGRLK 166 (200)
Q Consensus 140 -~~~~~~eDf~~~~~~~~~~~~~fG~~~ 166 (200)
....++-|..|+.....+ .+.|||+.
T Consensus 350 ~~~~G~~~da~~~~~~~~~-~~~fgp~~ 376 (409)
T COG0624 350 VSTGGGTHDARFFARLGIP-AVIFGPGD 376 (409)
T ss_pred ecCCCCcchHHHHHhcCCe-eEEECCCC
Confidence 111244777777654422 56777765
No 52
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.23 E-value=7.8e-12 Score=109.14 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=69.8
Q ss_pred eEEEEEEeeecCCcCCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
.+++|+++|+++|++.+ +.+.||+..+.+++..+... . .. ..++-..+.++ ++ ..|.+|++|+
T Consensus 214 ~~~~I~v~Gk~aHa~~~~~~g~nAi~~a~~~~~~l~~~---~-~~----------~~t~~~~g~i~-~g-~i~giPd~a~ 277 (410)
T TIGR01882 214 AAAKITIQGNNVHPGTAKGKMINAAQIAIDLHNLLPED---D-RP----------EYTEGREGFFH-LL-SIDGTVEEAK 277 (410)
T ss_pred eEEEEEEEEEecCcccChHHHHHHHHHHHHHHHhcCCc---C-CC----------ccccceeEEEE-EE-eEEEecCEEE
Confidence 58999999999999976 58999999998887655431 0 00 00111124445 33 4677999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE 109 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~ 109 (200)
+.+|+|+.+.++.+++.++|++++++.+.
T Consensus 278 l~~diR~~~~e~~e~i~~~i~~i~~~~~~ 306 (410)
T TIGR01882 278 LHYIIRDFEKENFQERKELMKRIVEKMNN 306 (410)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988654
No 53
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.22 E-value=5.9e-11 Score=105.20 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=73.6
Q ss_pred EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhH------hh---cccCC----CCC-CC-ccCCCCCCceEeeeEEec
Q 029000 3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQT------RF---YKDFP----PHP-KE-QVYGFETPSTMKPTQWSY 67 (200)
Q Consensus 3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~------~~---~~~~~----~~~-~~-~~~~~~~~~t~~~g~i~~ 67 (200)
|++|+++|+++|+|.|+.|+|||..+++++.+|+. .+ ...+. ... .. .........++++|.++
T Consensus 257 ~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~- 335 (466)
T PRK07318 257 KLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS- 335 (466)
T ss_pred EEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-
Confidence 68999999999999999999999999999999863 10 00000 000 00 00011223578888888
Q ss_pred CCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 68 gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
++... +|++.+|+|++++++.+++.++|++.+++...+
T Consensus 336 gg~~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~~~~~ 373 (466)
T PRK07318 336 FDEEK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGVTGVE 373 (466)
T ss_pred EecCc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCeE
Confidence 54321 699999999999999999999999998765433
No 54
>PRK08201 hypothetical protein; Provisional
Probab=99.21 E-value=1.2e-10 Score=102.90 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=76.8
Q ss_pred CeEEEEEEeeecC--CcCCCCC-CCCHHHHHHHHHHHHhHhhccc--------CCC------------------------
Q 029000 1 MIPWKLHVTGKLF--HSGLPHK-AINPLELAMEALKVIQTRFYKD--------FPP------------------------ 45 (200)
Q Consensus 1 ~~~~~I~v~G~~g--Has~P~~-g~NAi~~aa~~l~~l~~~~~~~--------~~~------------------------ 45 (200)
.++++|+++|+++ |||.|.. +.||+..+++++.+|++..... +.+
T Consensus 199 ~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
T PRK08201 199 LAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELG 278 (456)
T ss_pred eEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcC
Confidence 3789999999998 9987765 4799999999999997521000 000
Q ss_pred CCCCcc-CC------CCCCceEeeeEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 46 HPKEQV-YG------FETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 46 ~~~~~~-~~------~~~~~t~~~g~i~~gg----~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
...... .. .....+++++.|+ || +..|+||++|++.+|+|++|+++.+++.++|++.+++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~ 350 (456)
T PRK08201 279 VDELFGEEGYTALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAH 350 (456)
T ss_pred CccccCCcchHHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 000000 00 0012478888887 54 34799999999999999999999999999999998764
No 55
>PRK09104 hypothetical protein; Validated
Probab=99.18 E-value=1.4e-10 Score=102.72 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=77.5
Q ss_pred eEEEEEEee--ecCCcCC-CCCCCCHHHHHHHHHHHHhHhhcc-cCCCCC-------------------CC----ccCC-
Q 029000 2 IPWKLHVTG--KLFHSGL-PHKAINPLELAMEALKVIQTRFYK-DFPPHP-------------------KE----QVYG- 53 (200)
Q Consensus 2 ~~~~I~v~G--~~gHas~-P~~g~NAi~~aa~~l~~l~~~~~~-~~~~~~-------------------~~----~~~~- 53 (200)
++++|+++| +++|||. |+.|.||+..+++++.+|.+.... .++... .. ...+
T Consensus 208 ~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (464)
T PRK09104 208 VGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGL 287 (464)
T ss_pred EEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCC
Confidence 689999999 6899996 688999999999999998652100 000000 00 0000
Q ss_pred --------------CCCCceEeeeEEecCCC----ccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 54 --------------FETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 54 --------------~~~~~t~~~g~i~~gg~----~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
.....+++++.|+ +|. ..|+||++|++++|+|++|+++.+++.++|++.+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~ 358 (464)
T PRK09104 288 SIPAGEKGRSVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRAR 358 (464)
T ss_pred ccccCcccHHHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 0112578899998 663 5799999999999999999999999999999998764
No 56
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.18 E-value=1.6e-10 Score=98.56 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=83.4
Q ss_pred eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhccc--CCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000 2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD--FPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC 79 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a 79 (200)
+|++|++.|.+||||.|.. ..|+.++.+++..+++...+. +... .+.......+|++++.|+ ||.+.|++|++.
T Consensus 210 w~~~v~~~G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~--~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~ 285 (420)
T KOG2275|consen 210 WWLKVTANGTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLAS--GPKLALGDVTTINVGIIN-GGVQSNVLPETF 285 (420)
T ss_pred eEEEEEecCCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhc--CCceeccceeEEeeeeee-cccccCcCchhh
Confidence 6899999999999998654 478999999999888742111 0111 122223456899999999 999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHH-HHHHHHHhhc
Q 029000 80 TVSGDVRLTPFYNVTDVMKRL-QEYVDDINEN 110 (200)
Q Consensus 80 ~~~~diR~~~~~~~e~i~~~i-~~~~~~~~~~ 110 (200)
++.+|+|..+..+.+.+.+++ ++++++.+.-
T Consensus 286 ea~~dirv~~~~d~~~i~~~l~~~w~~~~~eg 317 (420)
T KOG2275|consen 286 EAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEG 317 (420)
T ss_pred eeeeeeEeccCCCHHHHHHHHHHHhhhhcCCc
Confidence 999999999999999999999 8888776553
No 57
>PRK07907 hypothetical protein; Provisional
Probab=99.13 E-value=5.1e-10 Score=98.75 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=77.4
Q ss_pred eEEEEEEe--eecCCcCCC-CCCCCHHHHHHHHHHHHhHhhcc----cCCCCCCCccC-----------------C----
Q 029000 2 IPWKLHVT--GKLFHSGLP-HKAINPLELAMEALKVIQTRFYK----DFPPHPKEQVY-----------------G---- 53 (200)
Q Consensus 2 ~~~~I~v~--G~~gHas~P-~~g~NAi~~aa~~l~~l~~~~~~----~~~~~~~~~~~-----------------~---- 53 (200)
++++++++ |+++|||.| ..+.||+..+++++.+|.+...+ .+....+.... .
T Consensus 201 ~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (449)
T PRK07907 201 ADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGT 280 (449)
T ss_pred EEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCC
Confidence 57788887 999999975 66899999999999999763111 00000000000 0
Q ss_pred ------CCCCceEeeeEEecC--CCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 54 ------FETPSTMKPTQWSYP--GGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 54 ------~~~~~t~~~g~i~~g--g~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
.....+++++.|+.+ |+..|+||++|++++|+|++|+++.+++.+.|++.+++.
T Consensus 281 ~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~ 342 (449)
T PRK07907 281 GSVADRLWAKPAITVIGIDAPPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAH 342 (449)
T ss_pred ChHHHHhhhcCcEEEEeeecCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 012357788888832 468899999999999999999999999999999998764
No 58
>PRK07205 hypothetical protein; Provisional
Probab=99.13 E-value=5.2e-10 Score=98.57 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=70.0
Q ss_pred EEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHh-----hcccCCCCCCC-----cc-CCCCCCceEeeeEEecCCCcc
Q 029000 4 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDFPPHPKE-----QV-YGFETPSTMKPTQWSYPGGGI 72 (200)
Q Consensus 4 ~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~-----~~~~~~~~~~~-----~~-~~~~~~~t~~~g~i~~gg~~~ 72 (200)
.+++++|+++|+|.|+.|.|||..+++++.++++. +.+.+....+. .. .......++++| ..
T Consensus 240 ~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg-------~~ 312 (444)
T PRK07205 240 NEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIA-------GL 312 (444)
T ss_pred cEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcCCCCccccCCccccCCCcCCceEEeE-------EE
Confidence 38999999999999999999999999999888642 11111000000 00 000112344443 35
Q ss_pred ceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 73 NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 73 NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
|++|++|++++|+|++++++.+++.++|++.+++..
T Consensus 313 nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~~ 348 (444)
T PRK07205 313 TITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEYG 348 (444)
T ss_pred EEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999887643
No 59
>PRK07079 hypothetical protein; Provisional
Probab=99.02 E-value=2.7e-09 Score=94.67 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred CeEEEEEEeeec-CCcCCCCCC--CCHHHHHHHHHHHHhHhhccc----C----------------CCCCCC--c-----
Q 029000 1 MIPWKLHVTGKL-FHSGLPHKA--INPLELAMEALKVIQTRFYKD----F----------------PPHPKE--Q----- 50 (200)
Q Consensus 1 ~~~~~I~v~G~~-gHas~P~~g--~NAi~~aa~~l~~l~~~~~~~----~----------------~~~~~~--~----- 50 (200)
.++++|+++|++ +|.|.++.| .||+..++.++.++.+..... + ...... .
T Consensus 207 ~~~~~v~v~G~~~~~hs~~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (469)
T PRK07079 207 AVNFRLRVNLRDGAHHSGNWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPD 286 (469)
T ss_pred EEEEEEEEeeCCCCCCCCccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccc
Confidence 368999999983 344435444 799999999999885421000 0 000000 0
Q ss_pred ----cC----CCCCCceEeeeEEecCC---CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 51 ----VY----GFETPSTMKPTQWSYPG---GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 51 ----~~----~~~~~~t~~~g~i~~gg---~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
.. ......+++++.|+ +| +..|+||++|++++|+|++|+++.+++.++|++.+++..
T Consensus 287 ~~~~~~~~~~~~~~~~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~ 354 (469)
T PRK07079 287 WGEPGLTPAERVFGWNTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHG 354 (469)
T ss_pred cCCCCcCHHHHHhhCCceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 00 00112578999999 66 368999999999999999999999999999999998754
No 60
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.01 E-value=1.6e-09 Score=96.32 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=72.9
Q ss_pred eEEEEEEee-ecCCcC-CCCCC-CCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000 2 IPWKLHVTG-KLFHSG-LPHKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE 78 (200)
Q Consensus 2 ~~~~I~v~G-~~gHas-~P~~g-~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~ 78 (200)
.+++|+++| +++||+ .|+.+ .||+.++++++.++++. ...+++.+. ||...|+||++
T Consensus 196 ~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~-------------------~~~~v~~~~-gg~~~N~ip~~ 255 (477)
T TIGR01893 196 EGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKEN-------------------LNFRLSDIK-GGSKRNAIPRE 255 (477)
T ss_pred eEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhc-------------------CCeEEEEEe-CCCcccccCCc
Confidence 589999999 999997 58888 59999999999988653 124578888 89999999999
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000 79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 108 (200)
Q Consensus 79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~ 108 (200)
|++++|+|..+.+..+.+.+.+.+.++...
T Consensus 256 ~~~~~diR~~~~~~l~~~~~~~~~~~~~~~ 285 (477)
T TIGR01893 256 AKALIAIDENDVKLLENLVKNFQSKFKSEY 285 (477)
T ss_pred eEEEEEEChhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988888888877777766544
No 61
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.01 E-value=2.8e-09 Score=94.20 Aligned_cols=96 Identities=14% Similarity=0.027 Sum_probs=69.2
Q ss_pred EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHh--Hhhcc------c-CC----CCC-CCcc-CCCCCCceEeeeEEec
Q 029000 3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQ--TRFYK------D-FP----PHP-KEQV-YGFETPSTMKPTQWSY 67 (200)
Q Consensus 3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~--~~~~~------~-~~----~~~-~~~~-~~~~~~~t~~~g~i~~ 67 (200)
+++|+++|+++|+|.|+.|+|||..+++++.++. +...+ . +. ... .... .......++++|.|+
T Consensus 244 ~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~- 322 (447)
T TIGR01887 244 TATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID- 322 (447)
T ss_pred EEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-
Confidence 6899999999999999999999999999999986 21000 0 00 000 0000 001234678999998
Q ss_pred CCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 029000 68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 104 (200)
Q Consensus 68 gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~ 104 (200)
++ +|++|++++|+|++++++.+++.+++.+.+
T Consensus 323 ~g-----~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~ 354 (447)
T TIGR01887 323 YE-----NAEAGLIGLNVRYPVGNDPDTMLKNELAKE 354 (447)
T ss_pred Ee-----CCcEEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 55 389999999999999999998777776443
No 62
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=98.99 E-value=1.4e-09 Score=97.02 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=72.1
Q ss_pred eEEEEEEee-ecCCcC-CCCCCC-CHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000 2 IPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE 78 (200)
Q Consensus 2 ~~~~I~v~G-~~gHas-~P~~g~-NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~ 78 (200)
.+++|+++| ++|||+ .|+.|+ |||..+++++.++.. ..+++++.|+ ||.+.|+||++
T Consensus 202 ~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~NaIp~~ 261 (485)
T PRK15026 202 ETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRNAIPRE 261 (485)
T ss_pred eEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccCCCCCC
Confidence 368999999 999999 799999 999999999987431 1467899999 99999999999
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000 79 CTVSGDVRLTPFYNVTDVMKRLQEYVDD 106 (200)
Q Consensus 79 a~~~~diR~~~~~~~e~i~~~i~~~~~~ 106 (200)
|++.+++|....+..+++.+.+.+.+.+
T Consensus 262 a~a~i~~~~~~~~~~~~~~~~~~~~~~~ 289 (485)
T PRK15026 262 AFATIAVAADKVDALKSLVNTYQEILKN 289 (485)
T ss_pred cEEEEEEChhHHHHHHHHHHHHHHHHHH
Confidence 9999999988777777777777666653
No 63
>PRK08554 peptidase; Reviewed
Probab=98.13 E-value=4.6e-06 Score=73.63 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=53.6
Q ss_pred cccee---CCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc-ccc-cccCcccccCCCccccccceeee---c---
Q 029000 71 GINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE-KLD-TRGPVSKYVLPDENIRGRHVLSL---H--- 139 (200)
Q Consensus 71 ~~Nvi---P~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~-~~~-~~~~~~~~~~~d~~l~~~~~~~~---~--- 139 (200)
..|++ |++|++++|+|+.+ .+.+++.++|++.++.....++ ++. ....++.+++.|+++...+.... +
T Consensus 301 ~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~g~~~ 379 (438)
T PRK08554 301 TPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEVEIRTNEKAGYLFTPPDEEIVKVALRVLKELGEDA 379 (438)
T ss_pred ccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceEEEEeccCCCCcCCCCChHHHHHHHHHHHHhCCCc
Confidence 34555 99999999999987 6889999999998865311121 111 11234556666766433221110 1
Q ss_pred --CCCCccccccccccccccccccccce
Q 029000 140 --YLTLGRDDFRIFPLRWQRHKIKFGRL 165 (200)
Q Consensus 140 --~~~~~~eDf~~~~~~~~~~~~~fG~~ 165 (200)
....|+-|.+++... ....+.|||.
T Consensus 380 ~~~~~~GgtDa~~~~~~-Gip~v~~Gp~ 406 (438)
T PRK08554 380 EPVEGPGASDSRYFTPY-GVKAIDFGPK 406 (438)
T ss_pred EEEecCCchHHHHHHhc-CCCceEECCC
Confidence 123466788888432 1122457775
No 64
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=96.38 E-value=0.0027 Score=56.67 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=62.3
Q ss_pred ceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc---
Q 029000 58 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH--- 134 (200)
Q Consensus 58 ~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~--- 134 (200)
.++++|.++ . .|+++.+.+|+|++++.+.+++.+.+++.++..+.+++.. ...++..++.|+++...+
T Consensus 338 ~t~n~g~i~-~------~~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~~~~~v~~~--~~~~p~~~~~d~plv~~l~~a 408 (477)
T TIGR01893 338 SSLNLGVVK-T------KENKVIFTFLIRSSVESDKDYVTEKIESIAKLAGARVEVS--AGYPSWQPDPQSNLLDTARKV 408 (477)
T ss_pred eeeeEEEEE-E------cCCEEEEEEEeCCCCchhHHHHHHHHHHHhhhcCeEEEEe--cCCCcccCCCCCHHHHHHHHH
Confidence 566777777 3 3889999999999999999999999999988554444321 123334456777643322
Q ss_pred -eeeecC-----CCCccccccccccccc-ccccccccee
Q 029000 135 -VLSLHY-----LTLGRDDFRIFPLRWQ-RHKIKFGRLK 166 (200)
Q Consensus 135 -~~~~~~-----~~~~~eDf~~~~~~~~-~~~~~fG~~~ 166 (200)
..+++. ...|+-|.++|...++ -..+.|||+.
T Consensus 409 ~~~~~g~~~~~~~~~Ggtd~~~~~~~~~~i~~v~~Gp~~ 447 (477)
T TIGR01893 409 YSEMFGEDPEVKVIHAGLECGIISSKIPDIDMISIGPNI 447 (477)
T ss_pred HHHHHCCCCeEEEeecCccHHHHHhhCCCceEEEeCCCC
Confidence 111111 1234456777766542 1136778764
No 65
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=96.22 E-value=0.0018 Score=56.68 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=70.9
Q ss_pred eEEEEEEeeecCCcCC-CCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000 2 IPWKLHVTGKLFHSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT 80 (200)
Q Consensus 2 ~~~~I~v~G~~gHas~-P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~ 80 (200)
+.+++++.|+.+|++. +....||+..+.++...+.. ++.+ ..++...|..+ .++..|.+.+++.
T Consensus 218 ~~~~~~~~g~~~h~~~a~~~~i~a~~~a~e~~~~~~~---~~~~-----------e~t~~~~Gv~~-~~~~~~~V~~~s~ 282 (414)
T COG2195 218 AAVRATIVGPNVHPGSAKGKMINALLLAAEFILELPL---EEVP-----------ELTEGPEGVYH-LGDSTNSVEETSL 282 (414)
T ss_pred heeeeeeeccCcCccchHHHHhhHHHhhhhhhhcCCc---cccc-----------ccccccceEEe-ccccccchhhhhh
Confidence 5688999999999875 66779999988888776543 1211 12445567778 8889999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
+...+|.......+...+.+++.+++...+
T Consensus 283 ~~~~iR~~d~~~~~s~~~~~~~~~~~~~~~ 312 (414)
T COG2195 283 NLAIIRDFDNLLFRARKDSMKDVVEEMAAS 312 (414)
T ss_pred hhhhhhhcchhHHHHhHHHHHHHHHHHHHH
Confidence 999999999877777777777766665443
No 66
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=95.15 E-value=0.012 Score=52.88 Aligned_cols=95 Identities=7% Similarity=-0.045 Sum_probs=59.7
Q ss_pred CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccceeee----cC-----
Q 029000 70 GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSL----HY----- 140 (200)
Q Consensus 70 ~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~~~----~~----- 140 (200)
+..+...+.+++.+++|++++.+.+++.++++++.+..+.+++.. ...++-+.++|+++...+..++ +.
T Consensus 349 g~v~~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~--~~~p~w~~~~ds~lv~~l~~~y~e~~G~~~~~~ 426 (485)
T PRK15026 349 GVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAK--GAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQ 426 (485)
T ss_pred EEEEEeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHcCcEEEEe--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEE
Confidence 344566788999999999999999999999999876655544322 1233345667776544332221 11
Q ss_pred CCCcccccccccccc-cccccccccee
Q 029000 141 LTLGRDDFRIFPLRW-QRHKIKFGRLK 166 (200)
Q Consensus 141 ~~~~~eDf~~~~~~~-~~~~~~fG~~~ 166 (200)
..-|+=|-++|.... ....+.|||..
T Consensus 427 ~ihaglEcG~~~~~~p~i~~VsfGP~~ 453 (485)
T PRK15026 427 IIHAGLECGLFKKPYPEMDMVSIGPTI 453 (485)
T ss_pred EEEEEehHHHHHhhCCCCCEEEECCCC
Confidence 112445556666543 22478999875
No 67
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=90.32 E-value=0.57 Score=41.44 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=60.6
Q ss_pred EEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHh--hcccCCCCCCCccCCCCCCceEeeeEEecCCCccce-eCCeEEEE
Q 029000 6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTR--FYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ-IPGECTVS 82 (200)
Q Consensus 6 I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~Nv-iP~~a~~~ 82 (200)
.-+.|+..|++.|..|+||-..++++..+|+-. +.++..... ..+|+.+.---+ -+..|| .|.++.+.
T Consensus 231 f~vvG~etHvG~~f~Gvnan~maSei~~~le~N~~l~dr~~Ge~------t~PPs~L~qkDl---Ke~Y~VqTp~~a~~~ 301 (553)
T COG4187 231 FFVVGCETHVGYPFEGVNANFMASEITRRLELNADLADRVDGEI------TPPPSCLEQKDL---KESYNVQTPERAWLY 301 (553)
T ss_pred eEEEeeccccCCcccCCCHHHHHHHHHHHhhcChhhhhhhCCee------CCCcHhhhhhhh---hhhccccCcchhhhh
Confidence 457899999999999999999999999998732 122211110 011111111111 234555 47788888
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 83 GDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 83 ~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
+|+= ..+.+.+++.+++++.++..+.+
T Consensus 302 fN~l-~h~~ta~~~~d~l~~~a~~A~~e 328 (553)
T COG4187 302 FNWL-YHSRTAKELFDRLKEEAETAAEE 328 (553)
T ss_pred heeh-hhcCCHHHHHHHHHHHHHHHHHH
Confidence 8874 44677888888888777765543
No 68
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=73.37 E-value=7.4 Score=34.25 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=37.8
Q ss_pred eEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 63 TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 63 g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
|.++ +++...|||.++...+.+|..|..+.+.+.+.+.+.++..
T Consensus 321 GaFs-~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~ 364 (473)
T KOG2276|consen 321 GAFS-GPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKV 364 (473)
T ss_pred ceee-CCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3345 6788999999999999999999999999988888877764
No 69
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=45.50 E-value=69 Score=20.53 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=27.4
Q ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 76 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 76 P~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
++...+.+.+..+...+.+++.+.++++.++.+.+
T Consensus 42 ~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~ 76 (81)
T cd04869 42 TPLFKAQATLALPAGTDLDALREELEELCDDLNVD 76 (81)
T ss_pred cceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcce
Confidence 35667788888887778999999999988776544
No 70
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.78 E-value=78 Score=20.24 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=27.6
Q ss_pred CeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q 029000 77 GECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENI 111 (200)
Q Consensus 77 ~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v 111 (200)
+...+.+.++.|++.+.+++.+.++++.++.+.++
T Consensus 37 ~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~i 71 (75)
T cd04870 37 GRLSLGILVQIPDSADSEALLKDLLFKAHELGLQV 71 (75)
T ss_pred CeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCceE
Confidence 55777788888888889999999999887765543
No 71
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=33.38 E-value=1.1e+02 Score=20.47 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=27.4
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 78 ECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 78 ~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
++++++.+|.+++.+...+.+.|.+.++..+..
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l~~~~ 36 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQQAQR 36 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcCChhh
Confidence 578999999999999999999998877654433
No 72
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=31.85 E-value=1.2e+02 Score=20.43 Aligned_cols=29 Identities=0% Similarity=0.062 Sum_probs=24.8
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000 79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107 (200)
Q Consensus 79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~ 107 (200)
.+.++-+|.+++....++.++|.+.++-.
T Consensus 9 f~~tIaIrvp~~~~y~~L~~ki~~kLkl~ 37 (80)
T cd06406 9 FKYTVAIQVARGLSYATLLQKISSKLELP 37 (80)
T ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 45678899999999999999999887654
No 73
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=30.62 E-value=96 Score=20.59 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=25.8
Q ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000 76 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110 (200)
Q Consensus 76 P~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 110 (200)
|....+.+++|.++ .+.+.+.+.+.+..++.+.+
T Consensus 46 ~~~~~~e~~v~~~~-~~~~~lr~~L~~la~elgvD 79 (84)
T cd04871 46 SPKACVEFSVRGQP-ADLEALRAALLELASELNVD 79 (84)
T ss_pred CCcEEEEEEEeCCC-CCHHHHHHHHHHHhcccCce
Confidence 45567889999766 78899999998877665544
No 74
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=27.07 E-value=33 Score=25.59 Aligned_cols=17 Identities=18% Similarity=0.508 Sum_probs=14.0
Q ss_pred cccceeEEEEeeHHHHH
Q 029000 161 KFGRLKCIFYLSIYKFI 177 (200)
Q Consensus 161 ~fG~~~~~~~~~~~~~~ 177 (200)
.|||+..++|.|--.-+
T Consensus 109 rfGpG~VIyw~G~~~~l 125 (139)
T PF14811_consen 109 RFGPGAVIYWFGFIDEL 125 (139)
T ss_pred HhCCceEEEeccchhhc
Confidence 78999999999965544
No 75
>PF04327 DUF464: Protein of unknown function (DUF464); InterPro: IPR007422 This entry is represented by Bacteriophage Cp-1, Orf13. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2IDL_A 2G0J_D 2G0I_B 2P92_B 1S12_C.
Probab=20.29 E-value=1.5e+02 Score=20.52 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=16.5
Q ss_pred cCCcCCCCCCCCHHHHHHHHHHH
Q 029000 12 LFHSGLPHKAINPLELAMEALKV 34 (200)
Q Consensus 12 ~gHas~P~~g~NAi~~aa~~l~~ 34 (200)
.|||...+.|.|-+-++...+..
T Consensus 19 ~GHA~~~~~G~DIVCAaVS~l~~ 41 (103)
T PF04327_consen 19 SGHAGYAEYGQDIVCAAVSALVQ 41 (103)
T ss_dssp ESTSS-STCCHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCCcEEehhHHHHHH
Confidence 57888888898888777666543
Done!