BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029001
         (200 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
           thaliana GN=At4g01150 PE=1 SV=1
          Length = 164

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 72/100 (72%), Gaps = 12/100 (12%)

Query: 108 KEESPVDGLTNELLDNLKIKFDS-EDKYSLVLYGTGALLALWLTTVV---------FPKL 157
           +E S +D  TNEL+ +LK K+D  E+K ++++YG GA++A+WL+++V          PK+
Sbjct: 66  EETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKV 123

Query: 158 MEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 197
           ME+VGLGYT WF +RYLLFK +R ELA  IE LK+++ GS
Sbjct: 124 MELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163


>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
           OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
          Length = 174

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 9/77 (11%)

Query: 131 EDKYSLVLYGTGALLALWLTTVVF---------PKLMEVVGLGYTLWFSWRYLLFKKNRD 181
           +DKY++       ++ALW +  +          P ++E+VG+GYT WF+++ L+FK +R+
Sbjct: 98  DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDRE 157

Query: 182 ELATKIEELKQQVLGSN 198
            L  K++   + +LGS+
Sbjct: 158 ALFEKVKSTYKDILGSS 174


>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
           GN=gltX PE=3 SV=1
          Length = 881

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 30/125 (24%)

Query: 102 VATAVPKEESPVDGLTNELLD----------NLKIKFDSEDKYSLV---------LYGTG 142
           V T++  ++ PVD +TN+ ++           + I F+  D  + +         L+G  
Sbjct: 754 VETSILDDQKPVDTVTNQTVEVEQPNKIKEQFINIFFNFPDYINQLYQQYQGQLKLFGWL 813

Query: 143 ALLALWLTTV-----------VFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELK 191
           AL+ L  T +           +   + E++G+ Y +WF +RYLL + NR EL  KIE +K
Sbjct: 814 ALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIK 873

Query: 192 QQVLG 196
           +++ G
Sbjct: 874 REIFG 878


>sp|Q98G67|SECA_RHILO Protein translocase subunit SecA OS=Rhizobium loti (strain
           MAFF303099) GN=secA PE=3 SV=1
          Length = 910

 Score = 31.2 bits (69), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 17/106 (16%)

Query: 35  ALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKR----DGATAAEDV 90
           AL   Q  V    + +R  +L Y         ++ S+   + V ++R    DG   +E +
Sbjct: 622 ALEKAQKKVEARNFDIRKNLLKY---------DDVSNDQRKVVFEQRIELMDGEGLSETI 672

Query: 91  PAVEKNVYNESVATAVPK----EESPVDGLTNELLDNLKIKFDSED 132
             + + V +E VA A+P+    E+  V GL  E+ + L +    ED
Sbjct: 673 AEMREGVIDEIVAKAIPENAYAEQWDVAGLKAEVAEFLNLDLPVED 718


>sp|B2A1G4|HEM1_NATTJ Glutamyl-tRNA reductase OS=Natranaerobius thermophilus (strain ATCC
           BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hemA PE=3 SV=1
          Length = 458

 Score = 30.8 bits (68), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 87  AEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDN------LKIK-FDSEDKYSLVLY 139
           AEDV  +E   Y++ +    PKE+  VD LT  +++       L+IK F  EDK  L + 
Sbjct: 354 AEDVRKMELEKYHKKLKNLSPKEQEAVDKLTKSIVNKILKEPVLRIKEFAVEDKSELYMA 413

Query: 140 GTGALLAL 147
               L  L
Sbjct: 414 TLAQLFDL 421


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,958,077
Number of Sequences: 539616
Number of extensions: 2761541
Number of successful extensions: 7047
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7041
Number of HSP's gapped (non-prelim): 14
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)