Query 029001
Match_columns 200
No_of_seqs 129 out of 168
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 1.7E-30 3.6E-35 216.3 8.3 82 117-198 76-167 (167)
2 PF14159 CAAD: CAAD domains of 99.9 5.6E-25 1.2E-29 166.2 5.1 75 122-196 2-90 (90)
3 PF11351 DUF3154: Protein of u 68.6 7.6 0.00017 30.8 3.8 52 124-175 47-117 (123)
4 PF05251 UPF0197: Uncharacteri 58.1 6.7 0.00014 29.9 1.6 35 152-186 17-51 (77)
5 PF04418 DUF543: Domain of unk 57.7 6.6 0.00014 29.4 1.6 29 123-151 17-49 (75)
6 PF06716 DUF1201: Protein of u 50.2 23 0.00049 25.4 3.1 35 135-180 7-41 (54)
7 TIGR00949 2A76 The Resistance 48.9 18 0.00039 28.8 2.9 24 152-175 51-74 (185)
8 PRK10520 rhtB homoserine/homos 48.7 18 0.00039 29.7 2.9 26 152-177 69-94 (205)
9 PRK10229 threonine efflux syst 48.3 18 0.0004 29.6 2.9 25 152-176 68-92 (206)
10 PF11833 DUF3353: Protein of u 47.8 31 0.00068 29.6 4.3 54 120-173 78-135 (194)
11 PRK10958 leucine export protei 47.5 19 0.00041 30.2 2.9 24 152-175 73-96 (212)
12 PF01810 LysE: LysE type trans 46.9 23 0.00051 28.2 3.2 30 152-181 56-85 (191)
13 TIGR00948 2a75 L-lysine export 46.8 20 0.00044 28.6 2.9 26 152-177 52-77 (177)
14 COG1280 RhtB Putative threonin 44.3 20 0.00044 30.1 2.6 32 146-177 63-94 (208)
15 PRK10323 cysteine/O-acetylseri 42.6 27 0.00059 28.7 3.1 27 150-176 67-93 (195)
16 KOG4452 Predicted membrane pro 41.6 21 0.00045 27.3 2.0 41 152-192 19-60 (79)
17 PRK09304 arginine exporter pro 39.4 30 0.00066 28.6 2.9 25 152-176 66-90 (207)
18 PF11862 DUF3382: Domain of un 38.0 33 0.00072 26.2 2.7 47 140-191 9-72 (101)
19 PF01102 Glycophorin_A: Glycop 32.4 48 0.001 26.9 2.9 20 161-180 78-97 (122)
20 PF06522 B12D: NADH-ubiquinone 30.5 34 0.00074 24.9 1.6 22 157-178 9-32 (73)
21 TIGR00540 hemY_coli hemY prote 29.4 48 0.001 29.9 2.7 45 136-180 8-71 (409)
22 COG4252 Predicted transmembran 28.6 52 0.0011 31.5 2.9 21 152-172 375-395 (400)
23 PF11364 DUF3165: Protein of u 28.2 59 0.0013 25.2 2.6 30 152-181 51-80 (81)
24 COG4137 ABC-type uncharacteriz 26.0 1.1E+02 0.0023 28.3 4.3 43 134-176 129-203 (265)
25 COG4956 Integral membrane prot 24.8 99 0.0021 29.6 3.9 32 152-185 108-139 (356)
26 PF08285 DPM3: Dolichol-phosph 24.1 2.3E+02 0.005 21.8 5.2 59 135-194 5-84 (91)
27 TIGR02230 ATPase_gene1 F0F1-AT 24.0 98 0.0021 24.4 3.2 23 152-174 74-96 (100)
28 PRK10747 putative protoheme IX 23.0 76 0.0016 28.7 2.8 44 136-179 8-70 (398)
29 KOG2927 Membrane component of 21.1 50 0.0011 31.7 1.3 21 153-173 258-278 (372)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=99.96 E-value=1.7e-30 Score=216.33 Aligned_cols=82 Identities=33% Similarity=0.728 Sum_probs=79.3
Q ss_pred hHHHHHHhhhhhc-cccchhhhhHHHHHHHHHHhhh---------cccchhhhhhhhhhhhhhHhhhhccccchHHHHHH
Q 029001 117 TNELLDNLKIKFD-SEDKYSLVLYGTGALLALWLTT---------VVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK 186 (200)
Q Consensus 117 ~~Evl~~Lk~kwD-seDK~avv~~G~gAlVAlWlss---------PLLp~lLELVGLgYT~WFvyRyLLfke~RqEL~~k 186 (200)
.+|+++.+|++|| .|||++++++++||+|++|++. ||+|++||||||||++||+||||+|+++|+||+++
T Consensus 76 ~~ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~k 155 (167)
T PLN02777 76 LPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEK 155 (167)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHH
Confidence 5699999999999 7999999999999999999987 99999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCC
Q 029001 187 IEELKQQVLGSN 198 (200)
Q Consensus 187 I~~lk~~I~G~~ 198 (200)
|+++|++|+|++
T Consensus 156 i~~lk~~IlG~s 167 (167)
T PLN02777 156 IKDTYKEIIGSS 167 (167)
T ss_pred HHHHHHHhhCCC
Confidence 999999999963
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.91 E-value=5.6e-25 Score=166.16 Aligned_cols=75 Identities=48% Similarity=0.879 Sum_probs=69.0
Q ss_pred HHhhhhhc-cccchhhhhHHHHH----HHHHHhhh---------cccchhhhhhhhhhhhhhHhhhhccccchHHHHHHH
Q 029001 122 DNLKIKFD-SEDKYSLVLYGTGA----LLALWLTT---------VVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKI 187 (200)
Q Consensus 122 ~~Lk~kwD-seDK~avv~~G~gA----lVAlWlss---------PLLp~lLELVGLgYT~WFvyRyLLfke~RqEL~~kI 187 (200)
++++++|+ ..++|+.+++++|+ ++++|+++ ||+|++|||||+||++||+||||+++++||||.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 56777788 58899999888888 88888876 999999999999999999999999999999999999
Q ss_pred HHHhhhhcC
Q 029001 188 EELKQQVLG 196 (200)
Q Consensus 188 ~~lk~~I~G 196 (200)
+++|++|+|
T Consensus 82 ~~~k~~i~G 90 (90)
T PF14159_consen 82 QSLKKEILG 90 (90)
T ss_pred HHHHHHhcC
Confidence 999999998
No 3
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=68.63 E-value=7.6 Score=30.82 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=32.6
Q ss_pred hhhhhcccc------chhhhhHHHHHHHHH------Hhhh-----cc-cc-hhhhhhhhhhhhhhHhhhhc
Q 029001 124 LKIKFDSED------KYSLVLYGTGALLAL------WLTT-----VV-FP-KLMEVVGLGYTLWFSWRYLL 175 (200)
Q Consensus 124 Lk~kwDseD------K~avv~~G~gAlVAl------Wlss-----PL-Lp-~lLELVGLgYT~WFvyRyLL 175 (200)
++......| +|++.....++++.- |... ++ +| ++..|.|+|++++|+.|..-
T Consensus 47 ~~~eln~~~afv~rwRP~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vpe~lw~Llg~~vlgy~~~Rs~e 117 (123)
T PF11351_consen 47 MQAELNRADAFVRRWRPALGWVCLLLFAWAFMLDPLWFWARMQAQALQVPEPLWWLLGAGVLGYFGARSQE 117 (123)
T ss_pred HHHHHhcCcccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCHHHHHHHHHHHhhhHHHhhHH
Confidence 344444467 887765555555544 2221 33 44 56789999999999999643
No 4
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=58.06 E-value=6.7 Score=29.87 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=25.7
Q ss_pred cccchhhhhhhhhhhhhhHhhhhccccchHHHHHH
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK 186 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLfke~RqEL~~k 186 (200)
|.+.-+|=.||+.+++||...-....+.++.+.++
T Consensus 17 p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kE 51 (77)
T PF05251_consen 17 PHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKE 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Confidence 66667788899999999998888865544444433
No 5
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=57.74 E-value=6.6 Score=29.40 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=21.1
Q ss_pred Hhhhhhc--ccc--chhhhhHHHHHHHHHHhhh
Q 029001 123 NLKIKFD--SED--KYSLVLYGTGALLALWLTT 151 (200)
Q Consensus 123 ~Lk~kwD--seD--K~avv~~G~gAlVAlWlss 151 (200)
.+.+||| .+| +.+..++++|+++.+++.=
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~fr 49 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFFR 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHc
Confidence 5668899 366 5566777888888887764
No 6
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=50.25 E-value=23 Score=25.41 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHhhhcccchhhhhhhhhhhhhhHhhhhccccch
Q 029001 135 SLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNR 180 (200)
Q Consensus 135 avv~~G~gAlVAlWlssPLLp~lLELVGLgYT~WFvyRyLLfke~R 180 (200)
+.+.+|+|-++-+.+. -+.|-.||+|+.+||..+-
T Consensus 7 s~L~~~F~~lIC~Fl~-----------~~~~F~~F~~Kqilfr~~~ 41 (54)
T PF06716_consen 7 SYLLLAFGFLICLFLF-----------CLVVFIWFVYKQILFRNNP 41 (54)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHccCC
Confidence 4466777777766543 3678899999999986543
No 7
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=48.92 E-value=18 Score=28.84 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=21.9
Q ss_pred cccchhhhhhhhhhhhhhHhhhhc
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLL 175 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLL 175 (200)
|.+=..+.++|-.|..|+.||-+.
T Consensus 51 ~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 51 VILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998665
No 8
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=48.67 E-value=18 Score=29.67 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=23.3
Q ss_pred cccchhhhhhhhhhhhhhHhhhhccc
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLFK 177 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLfk 177 (200)
|.+=.+++++|.+|..|+.+|-+..+
T Consensus 69 p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 69 LLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88889999999999999999987643
No 9
>PRK10229 threonine efflux system; Provisional
Probab=48.30 E-value=18 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.9
Q ss_pred cccchhhhhhhhhhhhhhHhhhhcc
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLF 176 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLf 176 (200)
|.+-.++.++|..|..|+.|+-+..
T Consensus 68 p~~~~~l~~~Ga~yLlylg~~~~~~ 92 (206)
T PRK10229 68 AWLHTIIMVGGGLYLCWMGYQMLRG 92 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998753
No 10
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=47.80 E-value=31 Score=29.58 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=32.0
Q ss_pred HHHHhhhhhccccchhhhhHHHH-HHHHHHhhh---cccchhhhhhhhhhhhhhHhhh
Q 029001 120 LLDNLKIKFDSEDKYSLVLYGTG-ALLALWLTT---VVFPKLMEVVGLGYTLWFSWRY 173 (200)
Q Consensus 120 vl~~Lk~kwDseDK~avv~~G~g-AlVAlWlss---PLLp~lLELVGLgYT~WFvyRy 173 (200)
.++.+...+|..+.-.+..-++. |++++|... +=.|.+.=.+|++.++||.+|.
T Consensus 78 wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 78 WLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred HHHhcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHh
Confidence 44444444785443333332222 444444443 5566666678999999999986
No 11
>PRK10958 leucine export protein LeuE; Provisional
Probab=47.53 E-value=19 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.402 Sum_probs=21.9
Q ss_pred cccchhhhhhhhhhhhhhHhhhhc
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLL 175 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLL 175 (200)
|.+=..++++|.+|..|+.||-+-
T Consensus 73 p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 73 PLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998774
No 12
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=46.89 E-value=23 Score=28.17 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=26.0
Q ss_pred cccchhhhhhhhhhhhhhHhhhhccccchH
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLFKKNRD 181 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLfke~Rq 181 (200)
|.+-..++++|..|..|+.|+.+..+.+.+
T Consensus 56 ~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~ 85 (191)
T PF01810_consen 56 PWLFMILKLLGALYLLYLGYKLLRSKFSSK 85 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 999999999999999999999997655443
No 13
>TIGR00948 2a75 L-lysine exporter.
Probab=46.81 E-value=20 Score=28.65 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=23.0
Q ss_pred cccchhhhhhhhhhhhhhHhhhhccc
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLFK 177 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLfk 177 (200)
|.+=..+.++|-+|..|..||-+..+
T Consensus 52 p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 52 PILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999887643
No 14
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=44.29 E-value=20 Score=30.05 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=26.3
Q ss_pred HHHhhhcccchhhhhhhhhhhhhhHhhhhccc
Q 029001 146 ALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFK 177 (200)
Q Consensus 146 AlWlssPLLp~lLELVGLgYT~WFvyRyLLfk 177 (200)
++...+|.+-.++.++|-.|-.|..|+-+..+
T Consensus 63 all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 63 ALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334499999999999999999999987754
No 15
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=42.59 E-value=27 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=23.6
Q ss_pred hhcccchhhhhhhhhhhhhhHhhhhcc
Q 029001 150 TTVVFPKLMEVVGLGYTLWFSWRYLLF 176 (200)
Q Consensus 150 ssPLLp~lLELVGLgYT~WFvyRyLLf 176 (200)
..|.+=.++.++|..|..|..||-+..
T Consensus 67 ~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 67 IDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 339999999999999999999998754
No 16
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=41.58 E-value=21 Score=27.33 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=27.8
Q ss_pred cccchhhhhhhhhhhhhhHhhhhc-cccchHHHHHHHHHHhh
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLL-FKKNRDELATKIEELKQ 192 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLL-fke~RqEL~~kI~~lk~ 192 (200)
|.+..+|=-||+.+++||..--.. .|.+|.-+.+-+-++..
T Consensus 19 PhLttvLl~iG~fftAwFf~~~VtStKy~r~l~KELlIsl~a 60 (79)
T KOG4452|consen 19 PHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLKELLISLTA 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEecchhhHHHHHHHHHHHHH
Confidence 888888889999999998754333 56666554444444433
No 17
>PRK09304 arginine exporter protein; Provisional
Probab=39.36 E-value=30 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.3
Q ss_pred cccchhhhhhhhhhhhhhHhhhhcc
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLF 176 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLf 176 (200)
|-+=.++.++|-.|..|..|+-+-.
T Consensus 66 p~~~~~l~~~Ga~YLlyLg~~~~rs 90 (207)
T PRK09304 66 PWLLALVTWGGVAFLLWYGFGAFKT 90 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987743
No 18
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=37.96 E-value=33 Score=26.16 Aligned_cols=47 Identities=23% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhcccchh-----------------hhhhhhhhhhhhHhhhhccccchHHHHHHHHHHh
Q 029001 140 GTGALLALWLTTVVFPKL-----------------MEVVGLGYTLWFSWRYLLFKKNRDELATKIEELK 191 (200)
Q Consensus 140 G~gAlVAlWlssPLLp~l-----------------LELVGLgYT~WFvyRyLLfke~RqEL~~kI~~lk 191 (200)
.++|++++.+..|++.-- .-.||++..+-|.++.+ |+.+.+++++.+
T Consensus 9 l~aall~lvl~~pi~Gl~l~~~g~~L~~~~r~~~~~~~V~~~~~~~Fl~qL~-----r~~~~~~~~~~~ 72 (101)
T PF11862_consen 9 LFAALLALVLFGPIVGLKLDNQGGQLVLEPRWGLLAWWVAVAAAGRFLFQLF-----RPWLARRFKKAP 72 (101)
T ss_pred HHHHHHHHHHHHHheEEEEecCCcEEEEEecchHHHHHHHHHHHHHHHHHHH-----HHHHHhhcccCC
Confidence 467777777777665433 44888999999999888 777776766655
No 19
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.43 E-value=48 Score=26.88 Aligned_cols=20 Identities=20% Similarity=0.251 Sum_probs=11.8
Q ss_pred hhhhhhhhhHhhhhccccch
Q 029001 161 VGLGYTLWFSWRYLLFKKNR 180 (200)
Q Consensus 161 VGLgYT~WFvyRyLLfke~R 180 (200)
||++..++|..|++.+|...
T Consensus 78 Ig~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 46666788888998887643
No 20
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=30.50 E-value=34 Score=24.90 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=14.4
Q ss_pred hhhhhhh--hhhhhhHhhhhcccc
Q 029001 157 LMEVVGL--GYTLWFSWRYLLFKK 178 (200)
Q Consensus 157 lLELVGL--gYT~WFvyRyLLfke 178 (200)
||=.||+ +..+||++|+|+..+
T Consensus 9 L~~~vg~a~~~a~~~~~r~l~~~P 32 (73)
T PF06522_consen 9 LFVIVGVAVGGATFYLYRLLLTNP 32 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444 456699999997544
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=29.38 E-value=48 Score=29.93 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHhhh----------------cccchh---hhhhhhhhhhhhHhhhhccccch
Q 029001 136 LVLYGTGALLALWLTT----------------VVFPKL---MEVVGLGYTLWFSWRYLLFKKNR 180 (200)
Q Consensus 136 vv~~G~gAlVAlWlss----------------PLLp~l---LELVGLgYT~WFvyRyLLfke~R 180 (200)
++++++|++++.|+.. ++.-.+ .=+++++|..|.+.|+++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~ 71 (409)
T TIGR00540 8 FLLLIAGIVAGPMIAGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAH 71 (409)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4556666677778776 222222 22334556667788888776643
No 22
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=28.64 E-value=52 Score=31.48 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=17.2
Q ss_pred cccchhhhhhhhhhhhhhHhh
Q 029001 152 VVFPKLMEVVGLGYTLWFSWR 172 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyR 172 (200)
|++|+++=|+|.++.+|-.++
T Consensus 375 P~ip~ll~l~~~~i~~~~~~~ 395 (400)
T COG4252 375 PLIPPLLALVGSGIWSTLFLK 395 (400)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 999999999887777776655
No 23
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=28.25 E-value=59 Score=25.16 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=24.5
Q ss_pred cccchhhhhhhhhhhhhhHhhhhccccchH
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLFKKNRD 181 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLfke~Rq 181 (200)
-+-|-+|=-+|+...++|.+|.+.+=+.|+
T Consensus 51 q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 51 QLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 566788888899999999999988766654
No 24
>COG4137 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=26.02 E-value=1.1e+02 Score=28.27 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHHHHHhhh-----------------cccchhhh-------hhhhh--------hhhhhHhhhhcc
Q 029001 134 YSLVLYGTGALLALWLTT-----------------VVFPKLME-------VVGLG--------YTLWFSWRYLLF 176 (200)
Q Consensus 134 ~avv~~G~gAlVAlWlss-----------------PLLp~lLE-------LVGLg--------YT~WFvyRyLLf 176 (200)
.++..||.-++.|+.+.. |.+||+++ ++++| .|||+..++++-
T Consensus 129 lsllaY~~l~Iaal~Al~l~~~dr~Lk~k~~~~~~~~lPPL~slErllF~~i~iG~vLLTltl~sG~lf~~~lF~ 203 (265)
T COG4137 129 LSLLAYATLGIAALYALQLLWLDRALKNKKVLAFNGNLPPLLSLERLLFRIIWIGFVLLTLTLCSGFLFVENLFA 203 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 456777777777776665 88998854 45555 467888888876
No 25
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=24.76 E-value=99 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=24.6
Q ss_pred cccchhhhhhhhhhhhhhHhhhhccccchHHHHH
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELAT 185 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyLLfke~RqEL~~ 185 (200)
|++..++-.++-...++|.+++-.+ .|+|+..
T Consensus 108 p~~~~ii~vi~t~il~y~G~~~~~k--~~de~~~ 139 (356)
T COG4956 108 PFISTIIPVILTIILAYFGFQLADK--KRDEFLR 139 (356)
T ss_pred cHHHhHHHHHHHHHHHHHhhHHhhh--hhHHHHH
Confidence 8899999999999999999887554 3455543
No 26
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=24.10 E-value=2.3e+02 Score=21.75 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHHhhh-----c-----------ccchhhhhhhhh-hhh-hhHhhhhcc---ccchHHHHHHHHHHhhh
Q 029001 135 SLVLYGTGALLALWLTT-----V-----------VFPKLMEVVGLG-YTL-WFSWRYLLF---KKNRDELATKIEELKQQ 193 (200)
Q Consensus 135 avv~~G~gAlVAlWlss-----P-----------LLp~lLELVGLg-YT~-WFvyRyLLf---ke~RqEL~~kI~~lk~~ 193 (200)
+-.+.++.++.++|++. | .+|-. =||-+| |+. --.||=..| ++..+||.+.|++-|++
T Consensus 5 ~~~l~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP~~-~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~d 83 (91)
T PF08285_consen 5 QQWLSALLLLSALWLALLLGLLPLPPEPQQEIIPYLPFY-ALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKAD 83 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHHhhHH-HHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 33556777888888886 3 22221 122221 222 223444444 56779999999998876
Q ss_pred h
Q 029001 194 V 194 (200)
Q Consensus 194 I 194 (200)
.
T Consensus 84 L 84 (91)
T PF08285_consen 84 L 84 (91)
T ss_pred H
Confidence 5
No 27
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.98 E-value=98 Score=24.40 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=19.3
Q ss_pred cccchhhhhhhhhhhhhhHhhhh
Q 029001 152 VVFPKLMEVVGLGYTLWFSWRYL 174 (200)
Q Consensus 152 PLLp~lLELVGLgYT~WFvyRyL 174 (200)
|.+--+|=++|++-.+|.+|+..
T Consensus 74 ~~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 74 FSWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999998764
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.96 E-value=76 Score=28.72 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHhhh----------------cccchh---hhhhhhhhhhhhHhhhhccccc
Q 029001 136 LVLYGTGALLALWLTT----------------VVFPKL---MEVVGLGYTLWFSWRYLLFKKN 179 (200)
Q Consensus 136 vv~~G~gAlVAlWlss----------------PLLp~l---LELVGLgYT~WFvyRyLLfke~ 179 (200)
++++.+|++++.|+.. ++.-.+ +=+++++|.+|.+.|+++..+.
T Consensus 8 ~~~l~~~~~~~~~~~~~~Gyv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 70 (398)
T PRK10747 8 FVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRTGA 70 (398)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4556666677788765 222222 2233445556667777766433
No 29
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.09 E-value=50 Score=31.67 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=15.0
Q ss_pred ccchhhhhhhhhhhhhhHhhh
Q 029001 153 VFPKLMEVVGLGYTLWFSWRY 173 (200)
Q Consensus 153 LLp~lLELVGLgYT~WFvyRy 173 (200)
|+|-|+|=||+.=+-|=.|-|
T Consensus 258 ~FPNL~eDvGfleSF~PLy~~ 278 (372)
T KOG2927|consen 258 LFPNLTEDVGFLESFKPLYEY 278 (372)
T ss_pred eccchhhhhhHHHhhcccccc
Confidence 788888888887776544443
Done!