Query 029001
Match_columns 200
No_of_seqs 129 out of 168
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 09:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 20.3 82 0.0028 22.5 3.1 30 162-191 23-52 (79)
2 1xc0_A Pardaxin P-4, PA4; BEND 14.4 22 0.00074 22.3 -1.0 26 141-166 2-27 (33)
3 4g6h_A Rotenone-insensitive NA 12.6 1.3E+02 0.0046 26.7 3.1 35 164-198 460-497 (502)
4 2amj_A Modulator of drug activ 12.3 40 0.0014 26.5 -0.4 43 154-196 162-204 (204)
5 1zi8_A Carboxymethylenebutenol 11.3 68 0.0023 23.1 0.6 34 118-151 101-134 (236)
6 2jbw_A Dhpon-hydrolase, 2,6-di 11.1 1.2E+02 0.004 24.8 2.1 65 80-151 177-242 (386)
7 2x43_S Sherp; membrane protein 11.0 1.5E+02 0.0051 21.2 2.3 22 178-199 37-58 (67)
8 2x4k_A 4-oxalocrotonate tautom 10.2 1.3E+02 0.0044 18.2 1.6 23 176-198 15-37 (63)
9 3abf_A 4-oxalocrotonate tautom 10.1 1.4E+02 0.0049 18.4 1.8 23 176-198 13-35 (64)
10 3h04_A Uncharacterized protein 9.8 1.4E+02 0.0047 21.4 1.9 33 118-151 83-115 (275)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.26 E-value=82 Score=22.48 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=21.3
Q ss_pred hhhhhhhhHhhhhccccchHHHHHHHHHHh
Q 029001 162 GLGYTLWFSWRYLLFKKNRDELATKIEELK 191 (200)
Q Consensus 162 GLgYT~WFvyRyLLfke~RqEL~~kI~~lk 191 (200)
.+|..++++||.++.-.+|+|...--++-.
T Consensus 23 liGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 23 LIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667899999999999998554433333
No 2
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=14.40 E-value=22 Score=22.28 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhcccchhhhhhhhhhh
Q 029001 141 TGALLALWLTTVVFPKLMEVVGLGYT 166 (200)
Q Consensus 141 ~gAlVAlWlssPLLp~lLELVGLgYT 166 (200)
+-|++--++++||+-.+|-.||-..+
T Consensus 2 ffalipkiissplfktllsavgsals 27 (33)
T 1xc0_A 2 FFALIPKIISSPLFKTLLSAVGSALS 27 (33)
T ss_dssp CSSSHHHHTTTTTHHHHHHHHHHHTT
T ss_pred hhhhhhHHHccHHHHHHHHHHHHHhh
Confidence 34566667788999999998886543
No 3
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=12.62 E-value=1.3e+02 Score=26.71 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=25.2
Q ss_pred hhhhhhHhh--hhccc-cchHHHHHHHHHHhhhhcCCC
Q 029001 164 GYTLWFSWR--YLLFK-KNRDELATKIEELKQQVLGSN 198 (200)
Q Consensus 164 gYT~WFvyR--yLLfk-e~RqEL~~kI~~lk~~I~G~~ 198 (200)
|+.+|++|| ||.+- .-|..+.--++=++..++|++
T Consensus 460 G~~a~~~w~~~yl~~l~~~r~r~~v~~~W~~~~~fgRd 497 (502)
T 4g6h_A 460 GLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 497 (502)
T ss_dssp EHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHHHccchhhhHHHHHHHHHHHhCCCC
Confidence 788899988 55543 336667777777788888875
No 4
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=12.30 E-value=40 Score=26.54 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=35.1
Q ss_pred cchhhhhhhhhhhhhhHhhhhccccchHHHHHHHHHHhhhhcC
Q 029001 154 FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 196 (200)
Q Consensus 154 Lp~lLELVGLgYT~WFvyRyLLfke~RqEL~~kI~~lk~~I~G 196 (200)
+-.+|..+|+-+..+|+...+-..+.|++.+++.+..-++++|
T Consensus 162 l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (204)
T 2amj_A 162 FHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204 (204)
T ss_dssp HHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 4678999999999999888777777899999888887666653
No 5
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=11.28 E-value=68 Score=23.14 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=25.0
Q ss_pred HHHHHHhhhhhccccchhhhhHHHHHHHHHHhhh
Q 029001 118 NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTT 151 (200)
Q Consensus 118 ~Evl~~Lk~kwDseDK~avv~~G~gAlVAlWlss 151 (200)
.+++++++...+.+++..+++...||.+|+.++.
T Consensus 101 ~~~~~~l~~~~~~~~~i~l~G~S~Gg~~a~~~a~ 134 (236)
T 1zi8_A 101 EAAIRYARHQPYSNGKVGLVGYSLGGALAFLVAS 134 (236)
T ss_dssp HHHHHHHTSSTTEEEEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEEECcCHHHHHHHhc
Confidence 3455666554443468888999999999999886
No 6
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41
Probab=11.11 E-value=1.2e+02 Score=24.82 Aligned_cols=65 Identities=20% Similarity=0.105 Sum_probs=38.1
Q ss_pred cCCceeeeeccccccCcccceeccccCCCCCCCCCCchHHHHHHhhhhhc-cccchhhhhHHHHHHHHHHhhh
Q 029001 80 KRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFD-SEDKYSLVLYGTGALLALWLTT 151 (200)
Q Consensus 80 ~rdg~~~~e~~~~~~~~~~~etv~~~~p~e~s~~dg~~~Evl~~Lk~kwD-seDK~avv~~G~gAlVAlWlss 151 (200)
++...|++-|.++.++. ........+.+....+++++|...-. ..++..+++...||.+|++++.
T Consensus 177 ~~G~~v~~~d~rG~G~s-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~ 242 (386)
T 2jbw_A 177 DRGMATATFDGPGQGEM-------FEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAA 242 (386)
T ss_dssp HTTCEEEEECCTTSGGG-------TTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHH
T ss_pred hCCCEEEEECCCCCCCC-------CCCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHc
Confidence 45667778888876554 00000001111113455666654322 2368888999999999999987
No 7
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=10.99 E-value=1.5e+02 Score=21.23 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHhhhhcCCCC
Q 029001 178 KNRDELATKIEELKQQVLGSND 199 (200)
Q Consensus 178 e~RqEL~~kI~~lk~~I~G~~~ 199 (200)
+-|+...++++++|.+|.|-.+
T Consensus 37 elkD~~~~~~E~iKDKisgGsd 58 (67)
T 2x43_S 37 EVRDAVSSTVESIKDKLSGGSS 58 (67)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHhHHHHHHHHhccCcc
Confidence 4578888999999999998654
No 8
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=10.21 E-value=1.3e+02 Score=18.19 Aligned_cols=23 Identities=13% Similarity=0.318 Sum_probs=19.4
Q ss_pred cccchHHHHHHHHHHhhhhcCCC
Q 029001 176 FKKNRDELATKIEELKQQVLGSN 198 (200)
Q Consensus 176 fke~RqEL~~kI~~lk~~I~G~~ 198 (200)
..+.+++|.+.|.+.-.+++|..
T Consensus 15 s~e~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 15 SDEQLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCcC
Confidence 45668999999999999999965
No 9
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=10.08 E-value=1.4e+02 Score=18.40 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.6
Q ss_pred cccchHHHHHHHHHHhhhhcCCC
Q 029001 176 FKKNRDELATKIEELKQQVLGSN 198 (200)
Q Consensus 176 fke~RqEL~~kI~~lk~~I~G~~ 198 (200)
..+.+++|.+.+.+.-.+++|..
T Consensus 13 s~eqk~~l~~~lt~~l~~~lg~~ 35 (64)
T 3abf_A 13 PPEKKRELVRRLTEMASRLLGEP 35 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCC
Confidence 45568899999999999999975
No 10
>3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp}
Probab=9.80 E-value=1.4e+02 Score=21.43 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhccccchhhhhHHHHHHHHHHhhh
Q 029001 118 NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTT 151 (200)
Q Consensus 118 ~Evl~~Lk~kwDseDK~avv~~G~gAlVAlWlss 151 (200)
.++++++.+.++ .++..+++...||.+|+.++.
T Consensus 83 ~~~~~~l~~~~~-~~~i~l~G~S~Gg~~a~~~a~ 115 (275)
T 3h04_A 83 YASFDAIQSQYS-NCPIFTFGRSSGAYLSLLIAR 115 (275)
T ss_dssp HHHHHHHHHTTT-TSCEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-CCCEEEEEecHHHHHHHHHhc
Confidence 345666665543 357888999999999998876
Done!