Query 029003
Match_columns 200
No_of_seqs 105 out of 430
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:56:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 3.8E-43 8.2E-48 282.9 16.4 153 27-187 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 1.5E-38 3.2E-43 254.0 14.9 146 20-175 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.6 2.1E-06 4.5E-11 66.3 13.0 140 23-181 3-143 (144)
4 KOG4016 Synaptic vesicle prote 58.9 1.2E+02 0.0026 26.2 13.9 149 22-187 21-170 (233)
5 KOG3088 Secretory carrier memb 31.6 2.6E+02 0.0055 25.3 7.5 68 108-189 198-265 (313)
6 PF06376 DUF1070: Protein of u 30.1 64 0.0014 19.7 2.5 16 116-131 13-28 (34)
7 PF05702 Herpes_UL49_5: Herpes 29.8 1.2E+02 0.0026 22.8 4.5 51 140-190 37-87 (98)
8 KOG0510 Ankyrin repeat protein 23.5 2.4E+02 0.0052 29.0 6.5 49 150-198 646-696 (929)
9 COG3763 Uncharacterized protei 20.3 1.6E+02 0.0036 20.8 3.4 21 177-197 14-40 (71)
10 PRK06654 fliL flagellar basal 16.9 1.9E+02 0.0041 24.1 3.6 41 1-41 1-46 (181)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=3.8e-43 Score=282.93 Aligned_cols=153 Identities=41% Similarity=0.658 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccccceeEEeeeccCCccceeeeEEeeccCchHHHHHHHHHHHHHHHHHHHHHHhh-cCCc
Q 029003 27 LVLRLLALAATASATIVMGLNKETKTFVVATVGTTPIKATFSAKFQHTPAFVFFVIANGLVSFHNVVMIAVNLFG-KKLD 105 (200)
Q Consensus 27 l~LR~~a~~~slas~~vM~t~~qt~~~~~~~~g~~p~~~~~~a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~-k~~~ 105 (200)
++||+++++++++|+++|+||+|+.++..+ .+++++||+|+++|+|+|++|+|+++|+++|+++++.. ++..
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~-------~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~ 73 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQ-------LITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRR 73 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecc-------cceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 479999999999999999999999987411 26789999999999999999999999999999988652 1111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029003 106 YKGLRLAMIAIFDLLNTVLVSAGVNGAVYMAELGKYGNSHARWNKICDRFKTFCDHGGGAIIASFIGLALMIVISIISIV 185 (200)
Q Consensus 106 ~~~~~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~l~~~~~s~lSa~ 185 (200)
....+|+ +|++||+++||++||++||+++++++|+||+|.+|+++|+.+++||||+++|++++|+|++++++++++|++
T Consensus 74 ~~~~~~~-~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~ 152 (154)
T TIGR01569 74 VFFKLIA-LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAI 152 (154)
T ss_pred chhHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2244677 499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 029003 186 KL 187 (200)
Q Consensus 186 ~L 187 (200)
++
T Consensus 153 ~~ 154 (154)
T TIGR01569 153 SL 154 (154)
T ss_pred cC
Confidence 75
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=1.5e-38 Score=254.02 Aligned_cols=146 Identities=32% Similarity=0.544 Sum_probs=132.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhccccceeEEeeeccCCccceeeeEEeeccCchHHHHHHHHHHHHHHHHHHHHHH
Q 029003 20 KPKGWVVLVLRLLALAATASATIVMGLNKETKTFVVATVGTTPIKATFSAKFQHTPAFVFFVIANGLVSFHNVVMIAVNL 99 (200)
Q Consensus 20 ~~~~~~~l~LR~~a~~~slas~~vM~t~~qt~~~~~~~~g~~p~~~~~~a~f~~~~af~ylv~an~I~~~Ysllql~~~~ 99 (200)
|+.+.++++||+++++++++|+++|++|+|+.++. .++++++|+|+++|+|++++|+|+++|+++|++.++
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~---------~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~ 71 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVF---------SIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSI 71 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceee---------ccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999998773 567899999999999999999999999999999987
Q ss_pred h---hcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhccccccccchhhHHHHHHHHHHHHHH
Q 029003 100 F---GKKLDYKGLRLAMIAIFDLLNTVLVSAGVNGAVYMAELGKYGNSHARWNKICDRFKTFCDHGGGAIIASFIGLAL 175 (200)
Q Consensus 100 ~---~k~~~~~~~~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~l~ 175 (200)
. +++..++...|++ |++||+++||++||++||+++++++++|+++.+|+++|+.+++||+|+++|++++|+|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~-f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 72 YSLSRGKLRSKLLAWFL-FILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred HHHHccCCcccchhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 6 2223345566774 9999999999999999999999999999999999999999999999999999999999974
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.57 E-value=2.1e-06 Score=66.34 Aligned_cols=140 Identities=18% Similarity=0.085 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccccceeEEeeeccCCccceeeeEEeeccCchHHHHHHHHHHHHHHHHHHHHHHhh-
Q 029003 23 GWVVLVLRLLALAATASATIVMGLNKETKTFVVATVGTTPIKATFSAKFQHTPAFVFFVIANGLVSFHNVVMIAVNLFG- 101 (200)
Q Consensus 23 ~~~~l~LR~~a~~~slas~~vM~t~~qt~~~~~~~~g~~p~~~~~~a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~- 101 (200)
+....+||+++++++++.+.+++....+.. .......++..|.+.+.++...+++..++.....
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 67 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS---------------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSL 67 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc---------------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999988764221 1245566778999999999999998888877653
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 029003 102 KKLDYKGLRLAMIAIFDLLNTVLVSAGVNGAVYMAELGKYGNSHARWNKICDRFKTFCDHGGGAIIASFIGLALMIVISI 181 (200)
Q Consensus 102 k~~~~~~~~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~l~~~~~s~ 181 (200)
+...+....+. ++..|.+++.+-+.+..+-+.-....+.+++ +.+.+...++-|+...++.++++++++++..+.+
T Consensus 68 ~~~~~~~~~~~-~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 68 KYRPRIPWPLV-EFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred hcccccccchh-HHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 11112233344 4899999999998877666543322122211 2233445567899999999999999999988765
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.91 E-value=1.2e+02 Score=26.15 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=84.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccceeEEeeeccCCccceeeeEEeeccCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 029003 22 KGWVVLVLRLLALAATASATIVMGLNKETKTFVVATVGTTPIKATFSAKFQHTPAFVFFVIANGLVSFHNVVMIAVNLFG 101 (200)
Q Consensus 22 ~~~~~l~LR~~a~~~slas~~vM~t~~qt~~~~~~~~g~~p~~~~~~a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~ 101 (200)
.|....++|++..+|+++-.--+.+.-=...-. -...+=+-=+|..+.+|=+++-+.++.=+++-+.++..-
T Consensus 21 ~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~--------~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f 92 (233)
T KOG4016|consen 21 LRKPQTILRVVSWLFSLIVFGSIVNEGYLNSAS--------SGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYF 92 (233)
T ss_pred hcCchhHHHHHHHHHHHhheeeeccccccCccc--------CCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466779999999999987665554432111000 012223344678899999999999999888888888652
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhcccc-ccccchhhHHHHHHHHHHHHHHHHHHH
Q 029003 102 KKLDYKGLRLAMIAIFDLLNTVLVSAGVNGAVYMAELGKYGNSHARWNKICD-RFKTFCDHGGGAIIASFIGLALMIVIS 180 (200)
Q Consensus 102 k~~~~~~~~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~-~~~~FC~~~~~Si~lsflA~l~~~~~s 180 (200)
.+..+.+.+-.. .+.|.++..|-.--= =.+-.++.. ||..-=+ ...-=-+.+.++|+.+|++.+.-...+
T Consensus 93 ~qISsv~~Rkra-Vl~Dl~~Salwtflw--fvGFc~l~n------qwqvs~p~~~~~~a~saraaIafsffSilsW~~~A 163 (233)
T KOG4016|consen 93 PQISSVKDRKRA-VLADLGVSALWAFLW--FVGFCFLAN------QWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQA 163 (233)
T ss_pred hhhcccchhHHH-HHHHHHHHHHHHHHH--HHHHHHHHH------HhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 221111111111 244555443321000 012223322 3532111 111123478899999999999888888
Q ss_pred HHHHHHh
Q 029003 181 IISIVKL 187 (200)
Q Consensus 181 ~lSa~~L 187 (200)
.+...+.
T Consensus 164 ~lA~qR~ 170 (233)
T KOG4016|consen 164 VLAFQRY 170 (233)
T ss_pred HHHHHHH
Confidence 8765544
No 5
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.55 E-value=2.6e+02 Score=25.27 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029003 108 GLRLAMIAIFDLLNTVLVSAGVNGAVYMAELGKYGNSHARWNKICDRFKTFCDHGGGAIIASFIGLALMIVISIISIVKL 187 (200)
Q Consensus 108 ~~~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~l~~~~~s~lSa~~L 187 (200)
+.-|++++.++|...+++ +|.+ -+|....+|..-=+.++ ...+.-++-++.++++-+.+++|.+-+
T Consensus 198 ~F~~FFF~y~~q~~~~v~-----qAvg-----f~g~~~~G~i~ai~~~~----~~i~v~i~m~i~a~~Ft~~av~~i~~i 263 (313)
T KOG3088|consen 198 NFGAFFFTYFFQIVFCVF-----QAVG-----FPGWGLCGWIPAIDVLS----GNIAVGILMLIGAGLFTLEAVLSIWVL 263 (313)
T ss_pred hhHHHHHHHHHHHHHHHH-----HHHc-----cCCcchhhhhhHhhccC----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777678899877777 3332 45555566765444333 444445566777888888888887766
Q ss_pred hc
Q 029003 188 AK 189 (200)
Q Consensus 188 ~~ 189 (200)
-+
T Consensus 264 ~k 265 (313)
T KOG3088|consen 264 QK 265 (313)
T ss_pred HH
Confidence 54
No 6
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=30.08 E-value=64 Score=19.70 Aligned_cols=16 Identities=6% Similarity=-0.244 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 029003 116 IFDLLNTVLVSAGVNG 131 (200)
Q Consensus 116 ~~Dqv~ayLL~saasA 131 (200)
..||.++|+|+-++-.
T Consensus 13 aiDqgiay~Lm~~Al~ 28 (34)
T PF06376_consen 13 AIDQGIAYMLMLVALV 28 (34)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5699999999875543
No 7
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=29.84 E-value=1.2e+02 Score=22.81 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=38.2
Q ss_pred hcCCCccchhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029003 140 KYGNSHARWNKICDRFKTFCDHGGGAIIASFIGLALMIVISIISIVKLAKS 190 (200)
Q Consensus 140 ~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~l~~~~~s~lSa~~L~~~ 190 (200)
+.++.+--|..-|+..|-.-+.-.++.++=|++.+...+..+.-+||.+=+
T Consensus 37 ~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aCfR 87 (98)
T PF05702_consen 37 REESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRACFR 87 (98)
T ss_pred HhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444579999998888888888888888888777777777777876533
No 8
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.48 E-value=2.4e+02 Score=29.04 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=34.0
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCCCCC
Q 029003 150 KICDRFKTFCDHGGGAIIASFIGLALMIVISIISIVKLAKSKS--NTPLLG 198 (200)
Q Consensus 150 ~vC~~~~~FC~~~~~Si~lsflA~l~~~~~s~lSa~~L~~~~~--~~~~~~ 198 (200)
++|+.|-.--..+.-...=+|..|.++.+---+|.|-|+...+ ++|.+|
T Consensus 646 p~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~eFs~p~ms 696 (929)
T KOG0510|consen 646 PVFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSSEFSNPFMS 696 (929)
T ss_pred CccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCCcCCCcch
Confidence 3344443334445666677899999999999999999998875 344443
No 9
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.32 E-value=1.6e+02 Score=20.84 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhccC------CCCCCC
Q 029003 177 IVISIISIVKLAKSK------SNTPLL 197 (200)
Q Consensus 177 ~~~s~lSa~~L~~~~------~~~~~~ 197 (200)
.+.-++.+|-+.|++ .|||+-
T Consensus 14 ll~G~~~G~fiark~~~k~lk~NPpin 40 (71)
T COG3763 14 LLAGLIGGFFIARKQMKKQLKDNPPIN 40 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 333444445555544 788863
No 10
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=16.85 E-value=1.9e+02 Score=24.14 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=19.9
Q ss_pred CCC-CCCCCCCCCCccccCCCCcchhHH----HHHHHHHHHHHHHH
Q 029003 1 MAP-ENNAKPEPGLKMVPVTKPKGWVVL----VLRLLALAATASAT 41 (200)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l----~LR~~a~~~slas~ 41 (200)
||. |...+++.+.+..+..++...... +||..++++..+-+
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~k~l~~~~i~~~a~i~ 46 (181)
T PRK06654 1 MAEKDDIGDENIDVGDAPDGRKVGLLPDVIIKILQWVAIGLFAVIF 46 (181)
T ss_pred CCchhhcchhhhhccccCCcCccCcChHHHHHHHHHHHHHHHHHHH
Confidence 444 333345555555555554443333 55666655544333
Done!