Query 029003
Match_columns 200
No_of_seqs 105 out of 430
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 10.8 2.5E+02 0.0084 18.1 3.2 29 72-100 27-55 (59)
2 2y69_J Cytochrome C oxidase po 7.7 3.4E+02 0.012 18.5 3.1 30 71-100 47-76 (80)
3 2bn5_B U1 small nuclear ribonu 5.8 2.4E+02 0.0082 15.0 1.1 9 191-199 12-20 (26)
4 2yfv_C SCM3, KLLA0F05115P; cel 5.6 1.1E+02 0.0037 20.2 -0.4 16 147-162 37-52 (63)
5 1jb0_X Photosystem I subunit P 4.9 4.1E+02 0.014 15.3 1.9 15 78-92 17-31 (35)
6 2e2s_A Agelenin; cystine knot, 4.9 1.7E+02 0.0057 17.1 0.1 10 152-161 3-12 (36)
7 3qoe_A Heterocyst differentiat 4.8 1.9E+02 0.0064 24.2 0.4 13 116-128 18-30 (302)
8 1emz_A Envelope glycoprotein E 4.3 2.1E+02 0.0073 15.5 0.3 15 134-152 9-23 (26)
9 2lg4_A Aurelin; antimicrobial 4.8 2.4E+02 0.0083 16.9 0.0 13 150-162 10-22 (40)
10 1eci_A Ectatomin; pore-forming 3.3 1.6E+02 0.0055 17.0 -0.8 12 147-158 7-18 (37)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=10.84 E-value=2.5e+02 Score=18.06 Aligned_cols=29 Identities=3% Similarity=-0.097 Sum_probs=22.7
Q ss_pred eccCchHHHHHHHHHHHHHHHHHHHHHHh
Q 029003 72 QHTPAFVFFVIANGLVSFHNVVMIAVNLF 100 (200)
Q Consensus 72 ~~~~af~ylv~an~I~~~Ysllql~~~~~ 100 (200)
+|.--|++..+..+++.+|++-.+.....
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~~~ 55 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWASF 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566788999999999999988876543
No 2
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.73 E-value=3.4e+02 Score=18.54 Aligned_cols=30 Identities=3% Similarity=-0.119 Sum_probs=23.5
Q ss_pred eeccCchHHHHHHHHHHHHHHHHHHHHHHh
Q 029003 71 FQHTPAFVFFVIANGLVSFHNVVMIAVNLF 100 (200)
Q Consensus 71 f~~~~af~ylv~an~I~~~Ysllql~~~~~ 100 (200)
=+|.--|.+..+..+++.+|++-.+....+
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~l~~~~~ 76 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYCLGWASF 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355566889999999999999988876544
No 3
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=5.83 E-value=2.4e+02 Score=14.96 Aligned_cols=9 Identities=33% Similarity=0.715 Sum_probs=6.2
Q ss_pred CCCCCCCCC
Q 029003 191 KSNTPLLGE 199 (200)
Q Consensus 191 ~~~~~~~~~ 199 (200)
.++||.+|.
T Consensus 12 vppppi~gr 20 (26)
T 2bn5_B 12 VPPPPILGR 20 (26)
T ss_dssp CCCCSCCCC
T ss_pred CCCCCcccC
Confidence 367778775
No 4
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=5.59 E-value=1.1e+02 Score=20.23 Aligned_cols=16 Identities=19% Similarity=0.765 Sum_probs=13.0
Q ss_pred chhccccccccchhhH
Q 029003 147 RWNKICDRFKTFCDHG 162 (200)
Q Consensus 147 ~W~~vC~~~~~FC~~~ 162 (200)
.|..+|+.|++|-++.
T Consensus 37 ~w~~Ii~KY~~~edqg 52 (63)
T 2yfv_C 37 VWSQIIQKYESIDNQG 52 (63)
T ss_dssp HHHHHHHHHHSGGGSS
T ss_pred HHHHHHHHHhcccCCC
Confidence 5999999999887654
No 5
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=4.94 E-value=4.1e+02 Score=15.30 Aligned_cols=15 Identities=27% Similarity=0.199 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 029003 78 VFFVIANGLVSFHNV 92 (200)
Q Consensus 78 ~ylv~an~I~~~Ysl 92 (200)
..++++|-++++|=+
T Consensus 17 lllLaINflVAayYF 31 (35)
T 1jb0_X 17 VLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357888988888843
No 6
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=4.86 E-value=1.7e+02 Score=17.06 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=6.7
Q ss_pred ccccccchhh
Q 029003 152 CDRFKTFCDH 161 (200)
Q Consensus 152 C~~~~~FC~~ 161 (200)
|-..++||+-
T Consensus 3 Clp~n~fCn~ 12 (36)
T 2e2s_A 3 CLPHNRFCNA 12 (36)
T ss_dssp SBCTTSCCCS
T ss_pred ccCCCCCccc
Confidence 5666777763
No 7
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=4.77 E-value=1.9e+02 Score=24.19 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 029003 116 IFDLLNTVLVSAG 128 (200)
Q Consensus 116 ~~Dqv~ayLL~sa 128 (200)
.+||++.||-|||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999998886
No 8
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.35 E-value=2.1e+02 Score=15.52 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=8.1
Q ss_pred HHHHHHhcCCCccchhccc
Q 029003 134 YMAELGKYGNSHARWNKIC 152 (200)
Q Consensus 134 ~i~~l~~~G~~~~~W~~vC 152 (200)
+++|....|| |-|++
T Consensus 9 glayfsm~gn----WaKVl 23 (26)
T 1emz_A 9 GIAYFSMVGN----WAKXX 23 (26)
T ss_dssp HHHHHHHHHH----HHC--
T ss_pred HHHHHHHhhH----Hhhhc
Confidence 4566666665 77765
No 9
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=4.80 E-value=2.4e+02 Score=16.86 Aligned_cols=13 Identities=46% Similarity=1.283 Sum_probs=10.3
Q ss_pred ccccccccchhhH
Q 029003 150 KICDRFKTFCDHG 162 (200)
Q Consensus 150 ~vC~~~~~FC~~~ 162 (200)
.+|..|..||+..
T Consensus 10 h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 10 HICESFKSFCKDS 22 (40)
Confidence 4688888888876
No 10
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=3.33 E-value=1.6e+02 Score=17.00 Aligned_cols=12 Identities=17% Similarity=0.875 Sum_probs=7.5
Q ss_pred chhccccccccc
Q 029003 147 RWNKICDRFKTF 158 (200)
Q Consensus 147 ~W~~vC~~~~~F 158 (200)
.|..+|......
T Consensus 7 iweticpt~~~~ 18 (37)
T 1eci_A 7 IWETVCPTVEPW 18 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhCcchHHH
Confidence 477777765543
Done!