Query 029003
Match_columns 200
No_of_seqs 105 out of 430
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 09:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029003.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029003hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 5.7 1.7E+02 0.012 14.6 1.9 14 79-92 12-25 (29)
2 d1rrza_ a.7.10.1 (A:) Glycogen 4.1 77 0.0056 19.3 -0.3 19 144-164 40-58 (66)
3 d1ppje2 f.23.12.1 (E:1-69) Iro 3.9 3.6E+02 0.027 16.2 3.0 18 117-134 31-48 (69)
4 d1oede_ f.36.1.1 (E:) Acetylch 3.0 4.1E+02 0.03 18.7 3.1 15 146-160 220-234 (260)
5 d3cx5e2 f.23.12.1 (E:31-86) Ir 2.8 5.5E+02 0.04 14.8 3.0 15 120-134 24-38 (56)
6 d2np5a1 a.4.1.9 (A:9-77) Trans 2.5 2.9E+02 0.021 15.5 1.2 24 133-156 9-32 (69)
7 d2bbga_ g.6.1.1 (A:) Amb V all 2.2 2E+02 0.014 15.3 0.1 9 152-160 19-27 (40)
8 d1svda2 d.58.9.1 (A:16-142) Ri 2.1 5.1E+02 0.037 17.4 2.3 19 131-149 31-49 (127)
9 d2i10a1 a.4.1.9 (A:10-78) Puta 2.1 3.8E+02 0.027 15.0 1.4 21 135-155 10-30 (69)
10 d2jnea1 g.41.18.1 (A:1-71) Hyp 2.0 2.5E+02 0.018 17.3 0.3 16 147-162 42-57 (71)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=5.71 E-value=1.7e+02 Score=14.64 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 029003 79 FFVIANGLVSFHNV 92 (200)
Q Consensus 79 ylv~an~I~~~Ysl 92 (200)
-++++|-++++|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36777888888854
No 2
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=4.15 E-value=77 Score=19.31 Aligned_cols=19 Identities=26% Similarity=0.777 Sum_probs=13.4
Q ss_pred CccchhccccccccchhhHHH
Q 029003 144 SHARWNKICDRFKTFCDHGGG 164 (200)
Q Consensus 144 ~~~~W~~vC~~~~~FC~~~~~ 164 (200)
.+-.|. |..|.-||.|+.-
T Consensus 40 e~r~WF--c~Ry~~Yc~q~~q 58 (66)
T d1rrza_ 40 EHRTWF--CARYAWYCQQMMQ 58 (66)
T ss_dssp HHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHH
Confidence 344565 8888888988754
No 3
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.90 E-value=3.6e+02 Score=16.23 Aligned_cols=18 Identities=22% Similarity=-0.047 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029003 117 FDLLNTVLVSAGVNGAVY 134 (200)
Q Consensus 117 ~Dqv~ayLL~saasAA~~ 134 (200)
..+.+.||+.++++.+.+
T Consensus 31 ~Rk~fsYl~~g~~~v~~a 48 (69)
T d1ppje2 31 ARKGFSYLVTATTTVGVA 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhceehhhhhhhHHHHHH
Confidence 446779988777666553
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.00 E-value=4.1e+02 Score=18.74 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=7.0
Q ss_pred cchhccccccccchh
Q 029003 146 ARWNKICDRFKTFCD 160 (200)
Q Consensus 146 ~~W~~vC~~~~~FC~ 160 (200)
..|..+-...||+|-
T Consensus 220 ~eW~~vA~viDR~~l 234 (260)
T d1oede_ 220 ENWVLIGKVIDKACF 234 (260)
T ss_dssp ------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 358888888888774
No 5
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.77 E-value=5.5e+02 Score=14.75 Aligned_cols=15 Identities=0% Similarity=-0.150 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029003 120 LNTVLVSAGVNGAVY 134 (200)
Q Consensus 120 v~ayLL~saasAA~~ 134 (200)
.+.|++..+.+...+
T Consensus 24 ~fsY~mvGs~g~~~a 38 (56)
T d3cx5e2 24 SYAYFMVGAMGLLSS 38 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eEEEEeeehhHHHHH
Confidence 346666655554443
No 6
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.51 E-value=2.9e+02 Score=15.48 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCCccchhccccccc
Q 029003 133 VYMAELGKYGNSHARWNKICDRFK 156 (200)
Q Consensus 133 ~~i~~l~~~G~~~~~W~~vC~~~~ 156 (200)
++.-.+.++|-.++...++|...+
T Consensus 9 aa~~l~~~~G~~~~ti~~Ia~~ag 32 (69)
T d2np5a1 9 ALFDVAAESGLEGASVREVAKRAG 32 (69)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHT
T ss_pred HHHHHHHHhCccccCHHHHHHHhC
Confidence 345567888998888888886433
No 7
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=2.23 E-value=2e+02 Score=15.34 Aligned_cols=9 Identities=22% Similarity=0.918 Sum_probs=5.5
Q ss_pred ccccccchh
Q 029003 152 CDRFKTFCD 160 (200)
Q Consensus 152 C~~~~~FC~ 160 (200)
|+..+++|-
T Consensus 19 cspigkycv 27 (40)
T d2bbga_ 19 CSPIGKYCV 27 (40)
T ss_dssp ECSSSSSCE
T ss_pred cccccCEEE
Confidence 566666663
No 8
>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Halothiobacillus neapolitanus [TaxId: 927]}
Probab=2.13 E-value=5.1e+02 Score=17.44 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCCccchh
Q 029003 131 GAVYMAELGKYGNSHARWN 149 (200)
Q Consensus 131 AA~~i~~l~~~G~~~~~W~ 149 (200)
||++++-..-.|..-.-|.
T Consensus 31 Aaa~vAaESSTgTwt~v~T 49 (127)
T d1svda2 31 AAAAVAAESSTGTWTTVWT 49 (127)
T ss_dssp HHHHHHHHTTTCCSSCCGG
T ss_pred HhhhheeeccCccceEEEc
Confidence 4555665566676444443
No 9
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.13 E-value=3.8e+02 Score=15.04 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=15.7
Q ss_pred HHHHHhcCCCccchhcccccc
Q 029003 135 MAELGKYGNSHARWNKICDRF 155 (200)
Q Consensus 135 i~~l~~~G~~~~~W~~vC~~~ 155 (200)
+-.+.++|-+.+...+||...
T Consensus 10 ~~lf~~~G~~~~ti~~Ia~~a 30 (69)
T d2i10a1 10 MELFWRQGYEGTSITDLTKAL 30 (69)
T ss_dssp HHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHCcccCCHHHHHHHh
Confidence 456678888888888888643
No 10
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=1.99 E-value=2.5e+02 Score=17.29 Aligned_cols=16 Identities=38% Similarity=0.833 Sum_probs=11.8
Q ss_pred chhccccccccchhhH
Q 029003 147 RWNKICDRFKTFCDHG 162 (200)
Q Consensus 147 ~W~~vC~~~~~FC~~~ 162 (200)
+-.+-|+..+-||++.
T Consensus 42 e~LkACGAvdYFC~~c 57 (71)
T d2jnea1 42 QVLKACGAVDYFCQHG 57 (71)
T ss_dssp EEEEETTEEEEEETTT
T ss_pred HHHHhccchhhhhccC
Confidence 3446788888899874
Done!