Query 029005
Match_columns 200
No_of_seqs 101 out of 797
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.4E-37 3.1E-42 250.5 25.3 184 11-200 31-218 (219)
2 PF03168 LEA_2: Late embryogen 99.5 8.4E-14 1.8E-18 98.4 8.3 97 77-179 1-101 (101)
3 smart00769 WHy Water Stress an 98.6 8.6E-07 1.9E-11 62.9 10.4 62 67-129 10-72 (100)
4 PF07092 DUF1356: Protein of u 98.4 1.9E-05 4.2E-10 63.9 15.7 111 5-128 68-180 (238)
5 PF12751 Vac7: Vacuolar segreg 97.7 0.00021 4.6E-09 61.5 9.3 89 11-107 294-382 (387)
6 COG5608 LEA14-like dessication 97.7 0.0016 3.5E-08 49.2 12.7 89 48-142 31-120 (161)
7 PLN03160 uncharacterized prote 93.8 1.8 3.9E-05 35.0 11.6 102 9-121 33-146 (219)
8 PF06072 Herpes_US9: Alphaherp 81.4 0.79 1.7E-05 29.1 1.0 25 19-43 35-59 (60)
9 TIGR02588 conserved hypothetic 80.9 3.3 7.1E-05 30.4 4.2 49 31-86 13-63 (122)
10 PF04881 Adeno_GP19K: Adenovir 77.7 3.8 8.3E-05 30.2 3.7 41 4-49 89-130 (139)
11 PRK05529 cell division protein 73.3 5.9 0.00013 32.7 4.3 44 49-93 58-128 (255)
12 PF11906 DUF3426: Protein of u 70.3 20 0.00044 26.6 6.4 57 53-110 49-106 (149)
13 PF14927 Neurensin: Neurensin 68.8 7.4 0.00016 29.3 3.6 34 7-43 33-67 (140)
14 PF09624 DUF2393: Protein of u 67.7 26 0.00056 26.2 6.5 64 39-111 35-100 (149)
15 COG4698 Uncharacterized protei 63.8 6.2 0.00013 30.9 2.4 44 9-58 4-47 (197)
16 COG2332 CcmE Cytochrome c-type 62.0 68 0.0015 24.4 7.8 35 75-109 73-108 (153)
17 PF14155 DUF4307: Domain of un 61.5 17 0.00037 26.1 4.2 28 98-128 70-99 (112)
18 PF11837 DUF3357: Domain of un 61.5 2.7 5.8E-05 30.0 0.0 15 12-26 24-38 (106)
19 PRK10893 lipopolysaccharide ex 60.4 54 0.0012 25.9 7.3 30 46-77 37-66 (192)
20 PF05473 Herpes_UL45: UL45 pro 59.6 12 0.00026 29.8 3.4 25 6-30 36-60 (200)
21 PF11322 DUF3124: Protein of u 58.4 54 0.0012 24.2 6.3 55 68-125 19-75 (125)
22 PF04573 SPC22: Signal peptida 54.7 55 0.0012 25.5 6.3 11 45-55 32-42 (175)
23 KOG3950 Gamma/delta sarcoglyca 54.7 34 0.00074 28.2 5.2 22 69-90 105-126 (292)
24 PF12505 DUF3712: Protein of u 54.6 32 0.00069 24.9 4.8 27 70-97 98-124 (125)
25 PF15012 DUF4519: Domain of un 54.0 15 0.00033 23.0 2.5 16 33-48 41-56 (56)
26 PF04790 Sarcoglycan_1: Sarcog 53.1 1.3E+02 0.0029 25.0 10.1 18 69-86 83-100 (264)
27 PRK13183 psbN photosystem II r 53.0 21 0.00046 21.4 2.9 20 28-47 13-32 (46)
28 PF00927 Transglut_C: Transglu 52.8 66 0.0014 22.3 6.1 58 69-127 12-74 (107)
29 KOG2927 Membrane component of 52.5 5.4 0.00012 34.5 0.4 58 4-62 208-272 (372)
30 PF09865 DUF2092: Predicted pe 51.3 1.3E+02 0.0028 24.2 8.8 40 67-107 34-75 (214)
31 PF05170 AsmA: AsmA family; I 50.3 99 0.0021 28.5 8.4 67 89-160 468-534 (604)
32 PF10177 DUF2371: Uncharacteri 49.5 26 0.00057 26.4 3.6 17 23-39 41-57 (141)
33 CHL00020 psbN photosystem II p 49.3 26 0.00056 20.8 2.8 20 28-47 10-29 (43)
34 PF12505 DUF3712: Protein of u 49.2 98 0.0021 22.3 8.3 68 104-177 2-71 (125)
35 PF02468 PsbN: Photosystem II 46.7 19 0.00041 21.3 2.0 20 28-47 10-29 (43)
36 PF05478 Prominin: Prominin; 45.6 22 0.00047 34.4 3.4 29 10-39 132-160 (806)
37 PRK06531 yajC preprotein trans 45.1 7.4 0.00016 28.2 0.1 9 41-49 16-24 (113)
38 PF07423 DUF1510: Protein of u 45.1 17 0.00036 29.4 2.1 12 17-28 13-24 (217)
39 COG1589 FtsQ Cell division sep 43.3 35 0.00077 28.2 3.9 32 30-61 38-69 (269)
40 PF11797 DUF3324: Protein of u 42.1 1.4E+02 0.003 22.1 9.3 90 48-160 26-117 (140)
41 PF06024 DUF912: Nucleopolyhed 42.0 40 0.00086 23.7 3.4 17 29-45 70-86 (101)
42 PF10907 DUF2749: Protein of u 40.7 43 0.00094 21.7 3.1 16 33-48 13-28 (66)
43 PTZ00116 signal peptidase; Pro 39.7 1.4E+02 0.003 23.6 6.4 82 17-102 6-93 (185)
44 PHA03029 hypothetical protein; 38.9 36 0.00078 22.7 2.6 38 11-49 47-84 (92)
45 PRK13150 cytochrome c-type bio 38.7 1.8E+02 0.0039 22.4 9.4 67 74-145 78-146 (159)
46 PF09911 DUF2140: Uncharacteri 38.6 49 0.0011 26.0 3.8 19 32-50 13-31 (187)
47 PF04478 Mid2: Mid2 like cell 38.2 26 0.00056 26.8 2.1 21 32-52 62-82 (154)
48 PF07705 CARDB: CARDB; InterP 37.9 1.1E+02 0.0025 20.2 5.3 51 72-127 19-69 (101)
49 PF04156 IncA: IncA protein; 37.6 29 0.00063 26.9 2.4 17 22-38 9-25 (191)
50 PF01102 Glycophorin_A: Glycop 37.2 9.7 0.00021 27.9 -0.3 27 30-56 74-101 (122)
51 PRK07021 fliL flagellar basal 36.8 87 0.0019 23.8 4.9 19 88-106 77-95 (162)
52 PF06092 DUF943: Enterobacteri 36.6 20 0.00043 27.5 1.3 17 32-48 13-29 (157)
53 PRK11901 hypothetical protein; 35.6 49 0.0011 28.5 3.5 11 5-15 17-27 (327)
54 PRK07718 fliL flagellar basal 35.5 49 0.0011 24.7 3.3 16 90-105 63-78 (142)
55 PF08113 CoxIIa: Cytochrome c 35.5 13 0.00029 20.7 0.1 13 31-43 12-24 (34)
56 PF12734 CYSTM: Cysteine-rich 34.9 58 0.0013 18.5 2.8 18 6-23 10-27 (37)
57 smart00831 Cation_ATPase_N Cat 34.4 63 0.0014 20.0 3.3 27 13-39 34-60 (64)
58 cd01324 cbb3_Oxidase_CcoQ Cyto 34.3 17 0.00036 22.0 0.4 15 34-48 20-34 (48)
59 COG1580 FliL Flagellar basal b 33.7 1.3E+02 0.0028 23.1 5.4 17 29-45 26-42 (159)
60 PF13396 PLDc_N: Phospholipase 32.8 49 0.0011 19.3 2.4 15 34-48 32-46 (46)
61 PF06129 Chordopox_G3: Chordop 32.8 39 0.00084 24.3 2.1 11 75-85 52-62 (109)
62 PF05545 FixQ: Cbb3-type cytoc 30.9 14 0.0003 22.3 -0.3 14 35-48 20-33 (49)
63 PF08999 SP_C-Propep: Surfacta 30.0 48 0.001 22.5 2.1 36 3-38 15-55 (93)
64 COG4736 CcoQ Cbb3-type cytochr 29.3 20 0.00043 22.9 0.2 13 37-49 22-34 (60)
65 PRK13254 cytochrome c-type bio 28.8 2.6E+02 0.0056 21.1 7.7 15 132-146 126-140 (148)
66 PHA02973 hypothetical protein; 28.7 1.3E+02 0.0029 21.2 4.2 51 41-102 16-67 (102)
67 PF09604 Potass_KdpF: F subuni 27.0 18 0.00038 18.9 -0.3 17 32-48 7-23 (25)
68 PF14283 DUF4366: Domain of un 26.9 71 0.0015 25.9 3.0 9 44-52 182-190 (218)
69 PF06637 PV-1: PV-1 protein (P 26.6 1E+02 0.0022 27.2 4.0 31 12-42 18-49 (442)
70 PLN02517 phosphatidylcholine-s 26.6 76 0.0016 29.8 3.5 23 11-33 13-38 (642)
71 PTZ00382 Variant-specific surf 25.4 45 0.00097 23.3 1.4 15 31-45 77-91 (96)
72 PF11239 DUF3040: Protein of u 25.4 1.6E+02 0.0034 19.6 4.1 8 30-37 54-61 (82)
73 PLN02769 Probable galacturonos 25.1 87 0.0019 29.5 3.6 7 10-16 13-19 (629)
74 PF05454 DAG1: Dystroglycan (D 24.7 25 0.00053 29.8 0.0 17 26-42 154-170 (290)
75 PF09307 MHC2-interact: CLIP, 24.2 25 0.00055 25.4 0.0 34 12-47 25-58 (114)
76 PRK15136 multidrug efflux syst 23.8 3.1E+02 0.0067 23.9 6.7 14 8-21 13-26 (390)
77 COG3121 FimC P pilus assembly 23.7 1.7E+02 0.0036 23.8 4.7 36 77-115 166-203 (235)
78 TIGR03602 streptolysinS bacter 22.9 4.2 9.1E-05 24.7 -3.5 10 14-23 25-34 (56)
79 COG5353 Uncharacterized protei 22.8 36 0.00077 25.9 0.5 23 26-48 12-34 (161)
80 PF12321 DUF3634: Protein of u 22.6 23 0.00051 25.4 -0.4 23 39-61 11-37 (108)
81 COG3008 PqiB Paraquat-inducibl 22.3 74 0.0016 29.4 2.5 21 44-64 41-61 (553)
82 PRK05886 yajC preprotein trans 22.1 25 0.00055 25.2 -0.4 9 41-49 18-26 (109)
83 PF02009 Rifin_STEVOR: Rifin/s 21.9 33 0.00071 29.2 0.2 16 31-46 265-280 (299)
84 PF13473 Cupredoxin_1: Cupredo 21.5 64 0.0014 22.3 1.7 35 51-85 19-54 (104)
85 cd01176 IPT_RBP-Jkappa IPT dom 21.4 1.8E+02 0.0038 20.3 3.7 37 76-112 22-58 (97)
86 PF15145 DUF4577: Domain of un 21.3 76 0.0016 22.9 1.9 22 26-47 67-88 (128)
87 PF11770 GAPT: GRB2-binding ad 21.3 1.4E+02 0.003 22.8 3.4 17 32-48 21-37 (158)
88 TIGR02115 potass_kdpF K+-trans 20.9 17 0.00037 19.2 -1.1 17 32-48 6-22 (26)
89 PHA02692 hypothetical protein; 20.8 2E+02 0.0044 18.9 3.7 15 9-23 36-50 (70)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=250.52 Aligned_cols=184 Identities=13% Similarity=0.195 Sum_probs=152.5
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEEEeeEEeCC----CceEeEEEEEEEEEecCCCe
Q 029005 11 RITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLDLFQYDE----AGLLETQVTIVIRMRNGNAK 86 (200)
Q Consensus 11 ~r~~~~~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP~~P~~~v~~~~v~~~~~~~----~~~l~~~~~~~l~~~NPN~~ 86 (200)
+|+++|++|++|+++++ ++++++++.++|++||||+|+|+|+++++++|++++ +..+|++++++++++|||.
T Consensus 31 ~~r~~~~~c~~~~~a~~---l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~- 106 (219)
T PLN03160 31 TRRRNCIKCCGCITATL---LILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV- 106 (219)
T ss_pred cccccceEEHHHHHHHH---HHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-
Confidence 34455555555555432 333566677788999999999999999999999864 3468888999999999998
Q ss_pred EEEEEeceEEEEEECCEEeecccccCeeecCCceeEEeeEEEecceecCHHHHHHHHccccCCeEEEEEEEEEEEEEEEe
Q 029005 87 AGASFSDTSVYLFFDGLKIAQLVADPFEVSKNSSVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSRTRWRIG 166 (200)
Q Consensus 87 ~~i~y~~~~v~v~Y~~~~lg~~~~p~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~~~v~~~~~vr~~vg 166 (200)
++++|+++++.++|+|+.+|.+.+|+|+|++++|+.+++.+......+-. ..+|.+|..+|.++|+++++.++++++|
T Consensus 107 ~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv~ 184 (219)
T PLN03160 107 ASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVKIL 184 (219)
T ss_pred eeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEEEE
Confidence 89999999999999999999999999999999999999876533222211 2358889999999999999999999999
Q ss_pred EEEEeeEEEEEEeEEEEeCCCCeeecCCCccCCC
Q 029005 167 VLGSVKFWCRLDCQLKFHPSNGSYIPSRCSSTTK 200 (200)
Q Consensus 167 ~~~~~~~~~~v~C~l~v~p~~g~~~~~~C~~k~~ 200 (200)
++.+++++.+++|++.++..+.++.+++|+.+++
T Consensus 185 ~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~~ 218 (219)
T PLN03160 185 KIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHVD 218 (219)
T ss_pred EEEEEEEEEEEEeEEEEECCCCEEeccEeccccc
Confidence 9999999999999999997677788889999875
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.51 E-value=8.4e-14 Score=98.43 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=69.9
Q ss_pred EEEEecCCCeEEEEEeceEEEEEECCEEee-cccccCeeecCCceeEEeeEEEecceecCHHHHHHHHccccCCeEEEEE
Q 029005 77 VIRMRNGNAKAGASFSDTSVYLFFDGLKIA-QLVADPFEVSKNSSVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDL 155 (200)
Q Consensus 77 ~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg-~~~~p~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~~~v 155 (200)
+++++|||. ++++|++++++++|+|+.+| ....++|.|++++++.+.+.+..+...+ .+.+.++. +|..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 578999999 99999999999999999999 6678999999999999988666543222 45566666 55666667
Q ss_pred EEEEEEEEEE-eE--EEEeeEEEEEEe
Q 029005 156 KGGSRTRWRI-GV--LGSVKFWCRLDC 179 (200)
Q Consensus 156 ~~~~~vr~~v-g~--~~~~~~~~~v~C 179 (200)
.+++++++++ +. +.+.+++++.+|
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeEC
Confidence 7777777773 43 334444554444
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.59 E-value=8.6e-07 Score=62.91 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=55.3
Q ss_pred CceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeeccccc-CeeecCCceeEEeeEEEe
Q 029005 67 AGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNSSVDFNYVVES 129 (200)
Q Consensus 67 ~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p-~f~q~~~~t~~~~~~~~~ 129 (200)
.+..+.++.+++.+.|||. +.+.|+.++..++|+|..+|++..+ ++..++++++.+.+.+..
T Consensus 10 ~~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 10 VSGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred ccceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 3467789999999999997 8999999999999999999999985 799999999998876654
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.44 E-value=1.9e-05 Score=63.92 Aligned_cols=111 Identities=20% Similarity=0.391 Sum_probs=73.1
Q ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEEEeeEEeCC-CceEeEEEEEEEEEecC
Q 029005 5 FFPPRRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLDLFQYDE-AGLLETQVTIVIRMRNG 83 (200)
Q Consensus 5 ~~~p~~~r~~~~~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP~~P~~~v~~~~v~~~~~~~-~~~l~~~~~~~l~~~NP 83 (200)
|+.|| |++....+..++|. ++.|++++ + +-||.-.++-.++......++. .+.+..++.-.+.++||
T Consensus 68 RLKPr--RTklyV~~sV~~CL------l~~~L~iF--F--LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~ 135 (238)
T PF07092_consen 68 RLKPR--RTKLYVFLSVLLCL------LLSGLVIF--F--LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNP 135 (238)
T ss_pred ccCCc--eeEEEeeHHHHHHH------HHHHheEE--E--EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCC
Confidence 66777 77776554444442 22233332 2 3377655554444433333332 35688999999999999
Q ss_pred CCeEEEEEeceEEEEEECCEEeecccccC-eeecCCceeEEeeEEE
Q 029005 84 NAKAGASFSDTSVYLFFDGLKIAQLVADP-FEVSKNSSVDFNYVVE 128 (200)
Q Consensus 84 N~~~~i~y~~~~v~v~Y~~~~lg~~~~p~-f~q~~~~t~~~~~~~~ 128 (200)
|. ..+.-.++.+++.|....+|.+.... ...++++.+.+...+.
T Consensus 136 NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~ 180 (238)
T PF07092_consen 136 NF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVK 180 (238)
T ss_pred CE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEee
Confidence 96 89999999999999999999987643 3557777766665443
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.75 E-value=0.00021 Score=61.52 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=57.1
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEE
Q 029005 11 RITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGAS 90 (200)
Q Consensus 11 ~r~~~~~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~ 90 (200)
|++++|.++.+|+.+.+++||++.|++.|++. -.+|=-.|+-..+++.-. +.-..-|++++.+.|||. +.|.
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~A----ttKpL~~v~v~~I~NVla---S~qELmfdl~V~A~NPn~-~~V~ 365 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAIGFVFA----TTKPLTDVQVVSIQNVLA---SEQELMFDLTVEAFNPNW-FTVT 365 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHHHhhhh----cCcccccceEEEeeeeee---ccceEEEeeEEEEECCCe-EEEE
Confidence 44566666666665555555555555555432 234433444444444322 344567899999999997 8999
Q ss_pred EeceEEEEEECCEEeec
Q 029005 91 FSDTSVYLFFDGLKIAQ 107 (200)
Q Consensus 91 y~~~~v~v~Y~~~~lg~ 107 (200)
.++.+++++-+..-+|.
T Consensus 366 I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 366 IDDMDLDIFAKSRYVGT 382 (387)
T ss_pred eccceeeeEecCCccCc
Confidence 99999999987665554
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.74 E-value=0.0016 Score=49.18 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeeccc-ccCeeecCCceeEEeeE
Q 029005 48 RIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLV-ADPFEVSKNSSVDFNYV 126 (200)
Q Consensus 48 ~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~-~p~f~q~~~~t~~~~~~ 126 (200)
++|.+.--.+..-...- ....+-.++.++|||. +.+-....+..++-+|..+|.+. ..++..++++..++++.
T Consensus 31 ~~p~ve~~ka~wGkvt~-----s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~ 104 (161)
T COG5608 31 KKPGVESMKAKWGKVTN-----SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVP 104 (161)
T ss_pred CCCCceEEEEEEEEEec-----cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEE
Confidence 56766655555554332 2357788899999998 89999999999999999999997 57799999999999887
Q ss_pred EEecceecCHHHHHHH
Q 029005 127 VESRPVPLDPELQEFA 142 (200)
Q Consensus 127 ~~~~~v~l~~~~~~~l 142 (200)
+.-+.-.+.......+
T Consensus 105 l~~d~~~~ke~w~~hi 120 (161)
T COG5608 105 LRLDNSKIKEWWVTHI 120 (161)
T ss_pred EEEehHHHHHHHHHHh
Confidence 7654333333333333
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=93.76 E-value=1.8 Score=34.98 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=51.4
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHheeeeEEEecC--CcEEEEEeEEEee-------EEeCC--C-ceEeEEEEE
Q 029005 9 RRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPR--IPVMSVVGAHLDL-------FQYDE--A-GLLETQVTI 76 (200)
Q Consensus 9 ~~~r~~~~~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP~--~P~~~v~~~~v~~-------~~~~~--~-~~l~~~~~~ 76 (200)
|+++.+||.|+++++.+ ++++ +++++++++=-=.|+ .-.++++++.+.. +|++- + +.-|.|. +
T Consensus 33 r~~~~~c~~~~~a~~l~-l~~v---~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~ 107 (219)
T PLN03160 33 RRNCIKCCGCITATLLI-LATT---ILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-A 107 (219)
T ss_pred cccceEEHHHHHHHHHH-HHHH---HHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-e
Confidence 44555566666666554 4322 233344444445563 3455566655432 23210 0 1224454 4
Q ss_pred EEEEecCCCeEEEEEeceEEEEEECCEEeecccccCeeecCCcee
Q 029005 77 VIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVADPFEVSKNSSV 121 (200)
Q Consensus 77 ~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p~f~q~~~~t~ 121 (200)
.+... |..+.++|+...+.- ..+..+..++..+..-+.+
T Consensus 108 ~~~Y~--~~~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~t 146 (219)
T PLN03160 108 SFKYS--NTTTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVT 146 (219)
T ss_pred eEEEc--CeEEEEEECCEEEEE----EEcCCcccCCCCeEEEEEE
Confidence 45554 345889998855543 3355556666666555544
No 8
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=81.40 E-value=0.79 Score=29.07 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHheeeeE
Q 029005 19 LIAIICTILAIAVIIAGIVVFTGYL 43 (200)
Q Consensus 19 ~~~~~~~~l~~lll~~gi~~~i~~l 43 (200)
+.++.+.++++-++..++-+++.|+
T Consensus 35 ~v~~v~~~~~~c~~S~~lG~~~~~~ 59 (60)
T PF06072_consen 35 AVAIVFAVVALCVLSGGLGALVAWH 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444434444444444555553
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=80.95 E-value=3.3 Score=30.36 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=30.6
Q ss_pred HHHHHHHheeeeEEE--ecCCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCe
Q 029005 31 VIIAGIVVFTGYLVM--HPRIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAK 86 (200)
Q Consensus 31 ll~~gi~~~i~~l~~--rP~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~ 86 (200)
+++++++.+++|..+ +++.|.+.+......+- ....+-+-++++|-..+
T Consensus 13 ~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 13 LILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCCc
Confidence 445566666666544 56789998877666542 12345666778886653
No 10
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=77.74 E-value=3.8 Score=30.20 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCCCCCCCCccchhhhHHHHH-HHHHHHHHHHHHHheeeeEEEecCC
Q 029005 4 KFFPPRRRITHPLIWLIAIIC-TILAIAVIIAGIVVFTGYLVMHPRI 49 (200)
Q Consensus 4 ~~~~p~~~r~~~~~~~~~~~~-~~l~~lll~~gi~~~i~~l~~rP~~ 49 (200)
..|||+ +.++.-.-+++++ +.++..++++++ .+|+..||+.
T Consensus 89 ~LWPPt--keN~V~fS~af~~~aclit~l~~~~i---~~~i~~kpR~ 130 (139)
T PF04881_consen 89 GLWPPT--KENIVGFSIAFCICACLITALLCVCI---HLLIKIKPRN 130 (139)
T ss_pred CcCCCc--ccceeeeeHHHHHHHHHHHHHHHHHH---hhheeecccc
Confidence 368886 8888655555443 333333333332 3345678864
No 11
>PRK05529 cell division protein FtsQ; Provisional
Probab=73.33 E-value=5.9 Score=32.72 Aligned_cols=44 Identities=5% Similarity=0.001 Sum_probs=28.1
Q ss_pred CcEEEEEeEEEeeEEeCC-------------Cce--------------EeEEEEEEEEEecCCCeEEEEEec
Q 029005 49 IPVMSVVGAHLDLFQYDE-------------AGL--------------LETQVTIVIRMRNGNAKAGASFSD 93 (200)
Q Consensus 49 ~P~~~v~~~~v~~~~~~~-------------~~~--------------l~~~~~~~l~~~NPN~~~~i~y~~ 93 (200)
.|.|.++++.|++-..-+ .+. +-.-=+++++-+.||. +.|+-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 589999999998754311 011 1112267778889996 7787644
No 12
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=70.30 E-value=20 Score=26.60 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=38.6
Q ss_pred EEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEE-ECCEEeecccc
Q 029005 53 SVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLF-FDGLKIAQLVA 110 (200)
Q Consensus 53 ~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~-Y~~~~lg~~~~ 110 (200)
.++.+++++..+.....-.-.+.++.+++|... ....|-.+++.++ -+|+.+++..+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 455555544443321122356788889999886 6899999999998 57778887665
No 13
>PF14927 Neurensin: Neurensin
Probab=68.83 E-value=7.4 Score=29.28 Aligned_cols=34 Identities=26% Similarity=0.619 Sum_probs=17.4
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHHHhe-eeeE
Q 029005 7 PPRRRITHPLIWLIAIICTILAIAVIIAGIVVF-TGYL 43 (200)
Q Consensus 7 ~p~~~r~~~~~~~~~~~~~~l~~lll~~gi~~~-i~~l 43 (200)
||..+|++-.+|=.++++. ++++++|++++ +-|+
T Consensus 33 ~~~~~~w~s~~wkV~~i~g---~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 33 QPSPSRWSSVCWKVGFISG---LLLLLLGIVALTVGYL 67 (140)
T ss_pred CCCCCCCcchhHHHHHHHH---HHHHHHHHHHHHhhcc
Confidence 3444455555554444443 45566677665 3443
No 14
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=67.69 E-value=26 Score=26.16 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=40.3
Q ss_pred eeeeEEEec--CCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeeccccc
Q 029005 39 FTGYLVMHP--RIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD 111 (200)
Q Consensus 39 ~i~~l~~rP--~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p 111 (200)
+++|.++.. +++..++.+.+- ++.+ -.+.+..+++|-.+ ..+..=.+++++..++...++....
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~--l~~~------~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n~~~~ 100 (149)
T PF09624_consen 35 FFGYYWLDKYLKKIELTLTSQKR--LQYS------ESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGNKFKE 100 (149)
T ss_pred HHHHHHHhhhcCCceEEEeeeee--eeec------cEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCchhhh
Confidence 334444443 556666655543 4333 35667788999876 6788888999998877655554433
No 15
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.84 E-value=6.2 Score=30.90 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEE
Q 029005 9 RRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAH 58 (200)
Q Consensus 9 ~~~r~~~~~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP~~P~~~v~~~~ 58 (200)
++...+-|.|.+-|+.++..+ ++++++-+++.|+.|...+.+++
T Consensus 4 kk~~~n~WKw~f~iLLAln~l------~~~~i~~~vlsp~ee~t~~~~a~ 47 (197)
T COG4698 4 KKGTLNYWKWLFFILLALNTL------LAVLIALFVLSPREEPTHLEDAS 47 (197)
T ss_pred ccccccHHHHHHHHHHHHHHH------HHHHhheeeccCCCCCchhhccC
Confidence 334445577776555432221 11344446788998766655544
No 16
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=62.04 E-value=68 Score=24.40 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=22.4
Q ss_pred EEEEEEecCCCeEEEEEeceEEEEEECCEE-eeccc
Q 029005 75 TIVIRMRNGNAKAGASFSDTSVYLFFDGLK-IAQLV 109 (200)
Q Consensus 75 ~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~-lg~~~ 109 (200)
.+.+.+..-|.++.+.|...-=+++=+|+. ++.+.
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~ 108 (153)
T COG2332 73 KVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQ 108 (153)
T ss_pred EEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEE
Confidence 344444566777888888777777767765 34454
No 17
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=61.49 E-value=17 Score=26.08 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=15.6
Q ss_pred EEECCEEeeccc--ccCeeecCCceeEEeeEEE
Q 029005 98 LFFDGLKIAQLV--ADPFEVSKNSSVDFNYVVE 128 (200)
Q Consensus 98 v~Y~~~~lg~~~--~p~f~q~~~~t~~~~~~~~ 128 (200)
.-|++.++|.-. +|| +...+..+.+.+.
T Consensus 70 ~~~d~aeVGrreV~vp~---~~~~~~~~~v~v~ 99 (112)
T PF14155_consen 70 LDYDGAEVGRREVLVPP---SGERTVRVTVTVR 99 (112)
T ss_pred EeCCCCEEEEEEEEECC---CCCcEEEEEEEEE
Confidence 346778888764 566 3344444444443
No 18
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=61.47 E-value=2.7 Score=30.02 Aligned_cols=15 Identities=33% Similarity=0.478 Sum_probs=0.0
Q ss_pred CccchhhhHHHHHHH
Q 029005 12 ITHPLIWLIAIICTI 26 (200)
Q Consensus 12 r~~~~~~~~~~~~~~ 26 (200)
|++...++.++++.+
T Consensus 24 ~rR~~k~~~~i~~s~ 38 (106)
T PF11837_consen 24 RRRPLKCLAAIFSSL 38 (106)
T ss_dssp ---------------
T ss_pred cCCcchhHHHHHHHH
Confidence 444445666666553
No 19
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=60.44 E-value=54 Score=25.86 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=22.3
Q ss_pred ecCCcEEEEEeEEEeeEEeCCCceEeEEEEEE
Q 029005 46 HPRIPVMSVVGAHLDLFQYDEAGLLETQVTIV 77 (200)
Q Consensus 46 rP~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~ 77 (200)
.++.|.|.+++++...|+-+ +.+++.+...
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~--G~l~y~l~a~ 66 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE--GALSYKLVAQ 66 (192)
T ss_pred CCCCCCEEEeccEEEEECCC--CCEEEEEEec
Confidence 46789999999999988763 5566655443
No 20
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=59.59 E-value=12 Score=29.82 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=13.0
Q ss_pred CCCCCCCccchhhhHHHHHHHHHHH
Q 029005 6 FPPRRRITHPLIWLIAIICTILAIA 30 (200)
Q Consensus 6 ~~p~~~r~~~~~~~~~~~~~~l~~l 30 (200)
..+|+++.+.+.|++.++|.+++.+
T Consensus 36 ~~~~~~~~s~~~~~~~~~~~~~~Gi 60 (200)
T PF05473_consen 36 STRREKRKSPCACFLFIICGILIGI 60 (200)
T ss_pred cccccccCCCcccHHHHHHHHHHHH
Confidence 3455556566666555555444433
No 21
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=58.36 E-value=54 Score=24.16 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=37.7
Q ss_pred ceEeEEEEEEEEEecCCCeEEEEEeceEEEEEE--CCEEeecccccCeeecCCceeEEee
Q 029005 68 GLLETQVTIVIRMRNGNAKAGASFSDTSVYLFF--DGLKIAQLVADPFEVSKNSSVDFNY 125 (200)
Q Consensus 68 ~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y--~~~~lg~~~~p~f~q~~~~t~~~~~ 125 (200)
.....+|+++|++||.+.+-.|+-.+.+ || +|..+-+.-=.|.+.+|-.+..+-+
T Consensus 19 ~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 19 KHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred CCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 4556789999999999988888775532 34 3444444434577888888777644
No 22
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=54.71 E-value=55 Score=25.52 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=5.9
Q ss_pred EecCCcEEEEE
Q 029005 45 MHPRIPVMSVV 55 (200)
Q Consensus 45 ~rP~~P~~~v~ 55 (200)
+.+..|..+++
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 55655655543
No 23
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=54.65 E-value=34 Score=28.24 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.1
Q ss_pred eEeEEEEEEEEEecCCCeEEEE
Q 029005 69 LLETQVTIVIRMRNGNAKAGAS 90 (200)
Q Consensus 69 ~l~~~~~~~l~~~NPN~~~~i~ 90 (200)
.+...=++++.++|||.++.=+
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred EEEeccCeeEEccCCCCceeee
Confidence 5556668999999999877544
No 24
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=54.60 E-value=32 Score=24.89 Aligned_cols=27 Identities=4% Similarity=0.112 Sum_probs=20.5
Q ss_pred EeEEEEEEEEEecCCCeEEEEEeceEEE
Q 029005 70 LETQVTIVIRMRNGNAKAGASFSDTSVY 97 (200)
Q Consensus 70 l~~~~~~~l~~~NPN~~~~i~y~~~~v~ 97 (200)
-..++..++.+.||.. +++..+...++
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 4567788888999986 88877776654
No 25
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=53.95 E-value=15 Score=23.04 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=10.5
Q ss_pred HHHHHheeeeEEEecC
Q 029005 33 IAGIVVFTGYLVMHPR 48 (200)
Q Consensus 33 ~~gi~~~i~~l~~rP~ 48 (200)
++.++++++|+..||+
T Consensus 41 ~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 41 VFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHhheeEEeccCC
Confidence 3344556778888885
No 26
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=53.08 E-value=1.3e+02 Score=25.00 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=12.1
Q ss_pred eEeEEEEEEEEEecCCCe
Q 029005 69 LLETQVTIVIRMRNGNAK 86 (200)
Q Consensus 69 ~l~~~~~~~l~~~NPN~~ 86 (200)
.+..+=++++.++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 344445678888888875
No 27
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=52.96 E-value=21 Score=21.44 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.0
Q ss_pred HHHHHHHHHHheeeeEEEec
Q 029005 28 AIAVIIAGIVVFTGYLVMHP 47 (200)
Q Consensus 28 ~~lll~~gi~~~i~~l~~rP 47 (200)
.+..+++|+.++.+|.+|-|
T Consensus 13 ~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 13 TILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHhhheeeeccCC
Confidence 44566779999999999977
No 28
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=52.83 E-value=66 Score=22.29 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=34.1
Q ss_pred eEeEEEEEEEEEecCCCeEEEE---EeceEEEEEECCEEeecc--cccCeeecCCceeEEeeEE
Q 029005 69 LLETQVTIVIRMRNGNAKAGAS---FSDTSVYLFFDGLKIAQL--VADPFEVSKNSSVDFNYVV 127 (200)
Q Consensus 69 ~l~~~~~~~l~~~NPN~~~~i~---y~~~~v~v~Y~~~~lg~~--~~p~f~q~~~~t~~~~~~~ 127 (200)
.+.-++++.+++.||.. ..++ ..=....++|.|...... .......+++++..+.+.+
T Consensus 12 ~vG~d~~v~v~~~N~~~-~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSS-EPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp BTTSEEEEEEEEEE-SS-S-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEeCCc-CccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 45568899999999965 2222 111345567888765333 2344556788888776654
No 29
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.46 E-value=5.4 Score=34.49 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCCCCCCCCccchhhh--HHHHHHHHHHHHHHHHHHheeeeEEEe--cC---CcEEEEEeEEEeeE
Q 029005 4 KFFPPRRRITHPLIWL--IAIICTILAIAVIIAGIVVFTGYLVMH--PR---IPVMSVVGAHLDLF 62 (200)
Q Consensus 4 ~~~~p~~~r~~~~~~~--~~~~~~~l~~lll~~gi~~~i~~l~~r--P~---~P~~~v~~~~v~~~ 62 (200)
|.||++=|+..-.-+. .|++ +.+++++|+=.|+..|.|+++. ++ -|...-+-.-+.+|
T Consensus 208 PLWP~~mR~gvyY~sig~~gfl-~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF 272 (372)
T KOG2927|consen 208 PLWPRRMRQGVYYLSIGAGGFL-AFILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESF 272 (372)
T ss_pred ccCcHHHhcceeeeecchhHHH-HHHHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhh
Confidence 5676665554332222 2222 2233333333444456666655 43 25444444444443
No 30
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=51.27 E-value=1.3e+02 Score=24.24 Aligned_cols=40 Identities=8% Similarity=0.133 Sum_probs=32.8
Q ss_pred CceEeEEEEEEEEEecCCCeEEEEEec--eEEEEEECCEEeec
Q 029005 67 AGLLETQVTIVIRMRNGNAKAGASFSD--TSVYLFFDGLKIAQ 107 (200)
Q Consensus 67 ~~~l~~~~~~~l~~~NPN~~~~i~y~~--~~v~v~Y~~~~lg~ 107 (200)
...+...-+.++.++-||+ +.+.+.. .+..++|+|..+.-
T Consensus 34 gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~Tl 75 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFTL 75 (214)
T ss_pred CceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEEE
Confidence 3578888899999999996 8899853 67889999988754
No 31
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=50.32 E-value=99 Score=28.50 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=36.2
Q ss_pred EEEeceEEEEEECCEEeecccccCeeecCCceeEEeeEEEecceecCHHHHHHHHccccCCeEEEEEEEEEE
Q 029005 89 ASFSDTSVYLFFDGLKIAQLVADPFEVSKNSSVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSR 160 (200)
Q Consensus 89 i~y~~~~v~v~Y~~~~lg~~~~p~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~~~v~~~~~ 160 (200)
+..+++++.+ |+|..=|.+.+..- .....+.....++++++.+-.......+.-+|...+++.++++
T Consensus 468 l~l~~l~~~l-~~G~~~~~~~ld~~----~~~~~~~~~~~~~~v~l~~Ll~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 468 LTLDPLSAKL-YGGSLSGSASLDAR----QDPPQYSLNLNLRGVQLQPLLQDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred EEEeeeeEec-CCcEEEEEEEEecc----CCCccEEEeeeeCCcchHHHHhhhccccCceEEEEEEEEEEeC
Confidence 4555777777 78777666665432 2223344445556677654433333333456666666655543
No 32
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=49.47 E-value=26 Score=26.36 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhe
Q 029005 23 ICTILAIAVIIAGIVVF 39 (200)
Q Consensus 23 ~~~~l~~lll~~gi~~~ 39 (200)
+++++=++++++|++..
T Consensus 41 ~~l~lG~lvllvGiaMA 57 (141)
T PF10177_consen 41 LFLLLGILVLLVGIAMA 57 (141)
T ss_pred HHHHHHHHHHHHhhHhh
Confidence 33444556666777654
No 33
>CHL00020 psbN photosystem II protein N
Probab=49.30 E-value=26 Score=20.77 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=15.8
Q ss_pred HHHHHHHHHHheeeeEEEec
Q 029005 28 AIAVIIAGIVVFTGYLVMHP 47 (200)
Q Consensus 28 ~~lll~~gi~~~i~~l~~rP 47 (200)
++..+++|+.+..+|.+|-|
T Consensus 10 ~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 10 FISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHhhheeeeeccCC
Confidence 34566679999999999977
No 34
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=49.18 E-value=98 Score=22.28 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=40.0
Q ss_pred EeecccccCeeecCCceeEEeeEEEeccee-cCHHHHHHHHccc-cCCeEEEEEEEEEEEEEEEeEEEEeeEEEEE
Q 029005 104 KIAQLVADPFEVSKNSSVDFNYVVESRPVP-LDPELQEFADTSL-KKDVVRFDLKGGSRTRWRIGVLGSVKFWCRL 177 (200)
Q Consensus 104 ~lg~~~~p~f~q~~~~t~~~~~~~~~~~v~-l~~~~~~~l~~d~-~~g~v~~~v~~~~~vr~~vg~~~~~~~~~~v 177 (200)
++|...+|+....+..+..+ ..+.+. .+.+...++.+++ .+..+.+.++.+ .+.++|.+......++.
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~----~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~~k 71 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISI----IDQTLTITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPFDK 71 (125)
T ss_pred ceEEEECCCEEecCCceEEE----eeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEeecc
Confidence 46777889888822222222 112222 3456677787776 566677777766 46778888654444433
No 35
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=46.72 E-value=19 Score=21.35 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.3
Q ss_pred HHHHHHHHHHheeeeEEEec
Q 029005 28 AIAVIIAGIVVFTGYLVMHP 47 (200)
Q Consensus 28 ~~lll~~gi~~~i~~l~~rP 47 (200)
.+..+++|+.++.+|.+|.|
T Consensus 10 ~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 10 FISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHhhhhhheeCC
Confidence 34456678888999999976
No 36
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=45.59 E-value=22 Score=34.40 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=16.9
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHhe
Q 029005 10 RRITHPLIWLIAIICTILAIAVIIAGIVVF 39 (200)
Q Consensus 10 ~~r~~~~~~~~~~~~~~l~~lll~~gi~~~ 39 (200)
+++..|.+.|+.++ .+++++++++|++..
T Consensus 132 ~~~~~c~R~~l~~~-L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 132 KKNDACRRGCLGIL-LLLLTLIILFGVICA 160 (806)
T ss_pred ccccccchHHHHHH-HHHHHHHHHHHHHHH
Confidence 44555656666555 455566666676653
No 37
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=45.10 E-value=7.4 Score=28.18 Aligned_cols=9 Identities=0% Similarity=0.113 Sum_probs=6.2
Q ss_pred eeEEEecCC
Q 029005 41 GYLVMHPRI 49 (200)
Q Consensus 41 ~~l~~rP~~ 49 (200)
+||.+||..
T Consensus 16 ~yf~iRPQk 24 (113)
T PRK06531 16 IFFMQRQQK 24 (113)
T ss_pred HHheechHH
Confidence 456789954
No 38
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=45.07 E-value=17 Score=29.44 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHH
Q 029005 17 IWLIAIICTILA 28 (200)
Q Consensus 17 ~~~~~~~~~~l~ 28 (200)
...|-++.++++
T Consensus 13 N~iLNiaI~IV~ 24 (217)
T PF07423_consen 13 NKILNIAIGIVS 24 (217)
T ss_pred hhhHHHHHHHHH
Confidence 445555544333
No 39
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=43.25 E-value=35 Score=28.24 Aligned_cols=32 Identities=6% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHHheeeeEEEecCCcEEEEEeEEEee
Q 029005 30 AVIIAGIVVFTGYLVMHPRIPVMSVVGAHLDL 61 (200)
Q Consensus 30 lll~~gi~~~i~~l~~rP~~P~~~v~~~~v~~ 61 (200)
.++++++.++++|...-+..|.+.+..+.+++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 34445556666777788888989999999887
No 40
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=42.15 E-value=1.4e+02 Score=22.06 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=58.0
Q ss_pred CCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECCE--EeecccccCeeecCCceeEEee
Q 029005 48 RIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGL--KIAQLVADPFEVSKNSSVDFNY 125 (200)
Q Consensus 48 ~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~--~lg~~~~p~f~q~~~~t~~~~~ 125 (200)
-.|.+.+.++.....+ ..-.+.+.++||+. .-+.=-.+++.|+..|. .+.......+.-.|.+.-.+.+
T Consensus 26 ~~p~L~l~~v~~~~~n--------~~~~i~~~l~N~~~-~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i 96 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQIN--------GRNVIQANLQNPQP-AILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPI 96 (140)
T ss_pred cCcccEEeeeeeeEEC--------CeeEEEEEEECCCc-hhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEe
Confidence 3577777777766543 34466778899985 22333357778888764 5777777778888888877654
Q ss_pred EEEecceecCHHHHHHHHccccCCeEEEEEEEEEE
Q 029005 126 VVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSR 160 (200)
Q Consensus 126 ~~~~~~v~l~~~~~~~l~~d~~~g~v~~~v~~~~~ 160 (200)
.+.++ .+..|...+++.++..
T Consensus 97 ~~~~~--------------~lk~G~Y~l~~~~~~~ 117 (140)
T PF11797_consen 97 PLGGK--------------KLKPGKYTLKITAKSG 117 (140)
T ss_pred cCCCc--------------CccCCEEEEEEEEEcC
Confidence 44322 3367887777766533
No 41
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=41.97 E-value=40 Score=23.71 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=8.4
Q ss_pred HHHHHHHHHheeeeEEE
Q 029005 29 IAVIIAGIVVFTGYLVM 45 (200)
Q Consensus 29 ~lll~~gi~~~i~~l~~ 45 (200)
.++.++.++.+|.|+++
T Consensus 70 s~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 70 SFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHhhheEEEE
Confidence 33333444455667654
No 42
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=40.69 E-value=43 Score=21.67 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=11.9
Q ss_pred HHHHHheeeeEEEecC
Q 029005 33 IAGIVVFTGYLVMHPR 48 (200)
Q Consensus 33 ~~gi~~~i~~l~~rP~ 48 (200)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3444667889999998
No 43
>PTZ00116 signal peptidase; Provisional
Probab=39.72 E-value=1.4e+02 Score=23.58 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEEEeeEEeCCC-----ceEeEEEEEEEE-EecCCCeEEEE
Q 029005 17 IWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLDLFQYDEA-----GLLETQVTIVIR-MRNGNAKAGAS 90 (200)
Q Consensus 17 ~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP~~P~~~v~~~~v~~~~~~~~-----~~l~~~~~~~l~-~~NPN~~~~i~ 90 (200)
.|.=+++|..+.+++++.++..+.-.+.+-+..|..+++-.+|.++...+. ..++.+++..|+ .-|=|.|.-+-
T Consensus 6 ~R~Nal~~f~~~vLa~l~~~~~~s~~f~~~~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFv 85 (185)
T PTZ00116 6 NRLNVLSYSMALCFLILCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFL 85 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEE
Confidence 344445554444443333332222222222455666776666667654321 244444444443 23667665554
Q ss_pred EeceEEEEEECC
Q 029005 91 FSDTSVYLFFDG 102 (200)
Q Consensus 91 y~~~~v~v~Y~~ 102 (200)
| +.+.|.+
T Consensus 86 y----v~a~Y~t 93 (185)
T PTZ00116 86 Y----VLVTYET 93 (185)
T ss_pred E----EEEEEcC
Confidence 4 4455654
No 44
>PHA03029 hypothetical protein; Provisional
Probab=38.90 E-value=36 Score=22.70 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=26.9
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHheeeeEEEecCC
Q 029005 11 RITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRI 49 (200)
Q Consensus 11 ~r~~~~~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP~~ 49 (200)
.|++.+-|++.+++ .++-+.+.+|.-.+.+|.++.|..
T Consensus 47 srrkg~ywflnf~f-wllp~al~a~fyffsiw~imnpqa 84 (92)
T PHA03029 47 SRRKGLYWFLNFLF-WLLPFALAAAFYFFSIWFIMNPQA 84 (92)
T ss_pred HHhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhheecccc
Confidence 45667889998885 344455566666678898988864
No 45
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=38.72 E-value=1.8e+02 Score=22.35 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=31.7
Q ss_pred EEEEEEEecCCCeEEEEEeceEEEEEECCEE-eecccccCeeecCCceeEEe-eEEEecceecCHHHHHHHHcc
Q 029005 74 VTIVIRMRNGNAKAGASFSDTSVYLFFDGLK-IAQLVADPFEVSKNSSVDFN-YVVESRPVPLDPELQEFADTS 145 (200)
Q Consensus 74 ~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~-lg~~~~p~f~q~~~~t~~~~-~~~~~~~v~l~~~~~~~l~~d 145 (200)
+.+.+.+...+..+.+.|...-=+++=+|+. ++.+.+ ++. +.-.-+ +...=+....++++++.|+++
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~----~~~-g~F~A~evLAKhdekYmPpEv~~al~~~ 146 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTL----EKG-NHVLAHEVLAKHDENYTPPEVEKAMQEN 146 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEE----CCC-CEEEEeEEEeCCCCCCCCHHHHHHHHHh
Confidence 3444555555555666666555455444443 334433 211 111111 111222356678888777654
No 46
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=38.56 E-value=49 Score=26.03 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=12.2
Q ss_pred HHHHHHheeeeEEEecCCc
Q 029005 32 IIAGIVVFTGYLVMHPRIP 50 (200)
Q Consensus 32 l~~gi~~~i~~l~~rP~~P 50 (200)
+++++++.+++.++.|..|
T Consensus 13 ~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 13 LNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHhheeeEEEccCCC
Confidence 3445555666778888865
No 47
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=38.19 E-value=26 Score=26.77 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=14.1
Q ss_pred HHHHHHheeeeEEEecCCcEE
Q 029005 32 IIAGIVVFTGYLVMHPRIPVM 52 (200)
Q Consensus 32 l~~gi~~~i~~l~~rP~~P~~ 52 (200)
++++++++++|+..|++.-.|
T Consensus 62 ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHhheeEEEecccCcc
Confidence 334666777888888886443
No 48
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=37.86 E-value=1.1e+02 Score=20.16 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=31.2
Q ss_pred EEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeecccccCeeecCCceeEEeeEE
Q 029005 72 TQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVADPFEVSKNSSVDFNYVV 127 (200)
Q Consensus 72 ~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p~f~q~~~~t~~~~~~~ 127 (200)
-.+.++++++|.-... -+...+.++..|..++...++++.. +.+..+.+.+
T Consensus 19 ~~~~i~~~V~N~G~~~---~~~~~v~~~~~~~~~~~~~i~~L~~--g~~~~v~~~~ 69 (101)
T PF07705_consen 19 EPVTITVTVKNNGTAD---AENVTVRLYLDGNSVSTVTIPSLAP--GESETVTFTW 69 (101)
T ss_dssp SEEEEEEEEEE-SSS----BEEEEEEEEETTEEEEEEEESEB-T--TEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCC---CCCEEEEEEECCceeccEEECCcCC--CcEEEEEEEE
Confidence 4677888899975422 3457788888898887766654443 3444444433
No 49
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.64 E-value=29 Score=26.90 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029005 22 IICTILAIAVIIAGIVV 38 (200)
Q Consensus 22 ~~~~~l~~lll~~gi~~ 38 (200)
+++.++-+++++.|+++
T Consensus 9 i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 9 IILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.18 E-value=9.7 Score=27.95 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=9.6
Q ss_pred HHHHHHHHheeeeEEEec-CCcEEEEEe
Q 029005 30 AVIIAGIVVFTGYLVMHP-RIPVMSVVG 56 (200)
Q Consensus 30 lll~~gi~~~i~~l~~rP-~~P~~~v~~ 56 (200)
++-++|++++|+|++-|- |++...++.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 334455666666665432 444444444
No 51
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=36.81 E-value=87 Score=23.83 Aligned_cols=19 Identities=5% Similarity=-0.115 Sum_probs=13.7
Q ss_pred EEEEeceEEEEEECCEEee
Q 029005 88 GASFSDTSVYLFFDGLKIA 106 (200)
Q Consensus 88 ~i~y~~~~v~v~Y~~~~lg 106 (200)
+-+|=...+.+.+.|....
T Consensus 77 ~~rylkv~i~L~~~~~~~~ 95 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEATR 95 (162)
T ss_pred CceEEEEEEEEEECCHHHH
Confidence 4678888888888776543
No 52
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=36.64 E-value=20 Score=27.52 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=10.7
Q ss_pred HHHHHHheeeeEEEecC
Q 029005 32 IIAGIVVFTGYLVMHPR 48 (200)
Q Consensus 32 l~~gi~~~i~~l~~rP~ 48 (200)
+++|+++.++|+.+||-
T Consensus 13 ~l~~~~~y~~W~~~rpV 29 (157)
T PF06092_consen 13 FLLACILYFLWLTLRPV 29 (157)
T ss_pred HHHHHHHHhhhhccCCe
Confidence 33344447788888884
No 53
>PRK11901 hypothetical protein; Reviewed
Probab=35.62 E-value=49 Score=28.46 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=6.1
Q ss_pred CCCCCCCCccc
Q 029005 5 FFPPRRRITHP 15 (200)
Q Consensus 5 ~~~p~~~r~~~ 15 (200)
|+|+|.||++.
T Consensus 17 Rrp~Rsr~~~~ 27 (327)
T PRK11901 17 RRPTRSRKSSN 27 (327)
T ss_pred CCCcccccCCC
Confidence 45566665543
No 54
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=35.52 E-value=49 Score=24.69 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=10.2
Q ss_pred EEeceEEEEEECCEEe
Q 029005 90 SFSDTSVYLFFDGLKI 105 (200)
Q Consensus 90 ~y~~~~v~v~Y~~~~l 105 (200)
+|=+.++.+.+++...
T Consensus 63 ~ylk~~i~l~~~~~~~ 78 (142)
T PRK07718 63 NFIRIQFKIETDSKKA 78 (142)
T ss_pred CEEEEEEEEEECCHHH
Confidence 4556777777766543
No 55
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=35.50 E-value=13 Score=20.69 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=6.8
Q ss_pred HHHHHHHheeeeE
Q 029005 31 VIIAGIVVFTGYL 43 (200)
Q Consensus 31 ll~~gi~~~i~~l 43 (200)
+.+++++++++|+
T Consensus 12 v~iLt~~ILvFWf 24 (34)
T PF08113_consen 12 VMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555566664
No 56
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=34.85 E-value=58 Score=18.50 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=9.3
Q ss_pred CCCCCCCccchhhhHHHH
Q 029005 6 FPPRRRITHPLIWLIAII 23 (200)
Q Consensus 6 ~~p~~~r~~~~~~~~~~~ 23 (200)
.|++++.++++.-|++.+
T Consensus 10 ~~~~~~~~g~l~gClaaL 27 (37)
T PF12734_consen 10 PPPQSGGDGCLAGCLAAL 27 (37)
T ss_pred CCCCCCCCChHHHHHHHH
Confidence 344455556665555444
No 57
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=34.35 E-value=63 Score=20.00 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=13.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhe
Q 029005 13 THPLIWLIAIICTILAIAVIIAGIVVF 39 (200)
Q Consensus 13 ~~~~~~~~~~~~~~l~~lll~~gi~~~ 39 (200)
++-+..++..+.-.+++++++++++.+
T Consensus 34 ~s~~~~~l~~~~~p~~~iL~~~a~is~ 60 (64)
T smart00831 34 RSPLLRFLRQFHNPLIYILLAAAVLSA 60 (64)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455566666665444444444444443
No 58
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=34.32 E-value=17 Score=22.05 Aligned_cols=15 Identities=13% Similarity=-0.009 Sum_probs=7.8
Q ss_pred HHHHheeeeEEEecC
Q 029005 34 AGIVVFTGYLVMHPR 48 (200)
Q Consensus 34 ~gi~~~i~~l~~rP~ 48 (200)
+++++.+++.+++|+
T Consensus 20 ~~~Figiv~wa~~p~ 34 (48)
T cd01324 20 ALFFLGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHHHhCCC
Confidence 344444444467775
No 59
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=33.70 E-value=1.3e+02 Score=23.07 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=9.7
Q ss_pred HHHHHHHHHheeeeEEE
Q 029005 29 IAVIIAGIVVFTGYLVM 45 (200)
Q Consensus 29 ~lll~~gi~~~i~~l~~ 45 (200)
+.++++|..+..+|+..
T Consensus 26 ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 26 IVLLALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33444556666667664
No 60
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=32.81 E-value=49 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=9.6
Q ss_pred HHHHheeeeEEEecC
Q 029005 34 AGIVVFTGYLVMHPR 48 (200)
Q Consensus 34 ~gi~~~i~~l~~rP~ 48 (200)
+-+++.++|+.++++
T Consensus 32 ~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 32 FPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHhheEEEeCC
Confidence 455666778777653
No 61
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=32.75 E-value=39 Score=24.30 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=6.4
Q ss_pred EEEEEEecCCC
Q 029005 75 TIVIRMRNGNA 85 (200)
Q Consensus 75 ~~~l~~~NPN~ 85 (200)
.-++-+.|||.
T Consensus 52 ~~t~lF~~~~~ 62 (109)
T PF06129_consen 52 LNTVLFLNPDK 62 (109)
T ss_pred eeeEEecCCCc
Confidence 33445777773
No 62
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.88 E-value=14 Score=22.26 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=7.2
Q ss_pred HHHheeeeEEEecC
Q 029005 35 GIVVFTGYLVMHPR 48 (200)
Q Consensus 35 gi~~~i~~l~~rP~ 48 (200)
+++++++|.+++|+
T Consensus 20 ~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 20 VFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHccc
Confidence 33334444466776
No 63
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=30.00 E-value=48 Score=22.51 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=10.3
Q ss_pred CCCCCCCCCCc--cch---hhhHHHHHHHHHHHHHHHHHHh
Q 029005 3 PKFFPPRRRIT--HPL---IWLIAIICTILAIAVIIAGIVV 38 (200)
Q Consensus 3 ~~~~~p~~~r~--~~~---~~~~~~~~~~l~~lll~~gi~~ 38 (200)
-|..-||-|-. +|= ++++++...+.++.++++|...
T Consensus 15 ~ysa~p~~r~~iPc~p~~lKrlliivvVvVlvVvvivg~LL 55 (93)
T PF08999_consen 15 DYSAAPRGRFGIPCCPVNLKRLLIIVVVVVLVVVVIVGALL 55 (93)
T ss_dssp ------------SSS-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCccCCCccccccceEEEEEEeeehhHHHHHHHHH
Confidence 34555554333 331 4455554444444444444433
No 64
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=20 Score=22.88 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=7.8
Q ss_pred HheeeeEEEecCC
Q 029005 37 VVFTGYLVMHPRI 49 (200)
Q Consensus 37 ~~~i~~l~~rP~~ 49 (200)
++.++|.++||+.
T Consensus 22 fiavi~~ayr~~~ 34 (60)
T COG4736 22 FIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHhcccc
Confidence 3344566788863
No 65
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.78 E-value=2.6e+02 Score=21.14 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=8.6
Q ss_pred eecCHHHHHHHHccc
Q 029005 132 VPLDPELQEFADTSL 146 (200)
Q Consensus 132 v~l~~~~~~~l~~d~ 146 (200)
-..++++.++++++-
T Consensus 126 kY~p~ev~~~~~~~~ 140 (148)
T PRK13254 126 NYMPKEVADALKKAG 140 (148)
T ss_pred CCCCHHHHHHHHHhc
Confidence 344666666666543
No 66
>PHA02973 hypothetical protein; Provisional
Probab=28.72 E-value=1.3e+02 Score=21.22 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=30.0
Q ss_pred eeEEEec-CCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECC
Q 029005 41 GYLVMHP-RIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDG 102 (200)
Q Consensus 41 ~~l~~rP-~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~ 102 (200)
.|+-+.| .+-+..|....-.+.. ++ .....++-+.||++. -...+.++|+.
T Consensus 16 Y~fn~~pTNKmq~aV~~l~~e~~~-d~-----p~~l~t~lF~~~~~~-----~~~~v~~yyds 67 (102)
T PHA02973 16 YFFNFKRTNKMDIGINPIKKIPWS-DN-----DHIFVSSLFHNKDKY-----LTGPMKLNYDP 67 (102)
T ss_pred HHhhccccchhhhhhhhccccccc-CC-----CceeEEEEecCCCCc-----cccceEEEEcC
Confidence 3455666 4667777776666632 32 234556678898863 34566666643
No 67
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=27.02 E-value=18 Score=18.88 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=9.0
Q ss_pred HHHHHHheeeeEEEecC
Q 029005 32 IIAGIVVFTGYLVMHPR 48 (200)
Q Consensus 32 l~~gi~~~i~~l~~rP~ 48 (200)
+.+++++..+|-.++|.
T Consensus 7 v~~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 7 VAVALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 33444555555556775
No 68
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=26.91 E-value=71 Score=25.86 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=5.8
Q ss_pred EEecCCcEE
Q 029005 44 VMHPRIPVM 52 (200)
Q Consensus 44 ~~rP~~P~~ 52 (200)
+.||+....
T Consensus 182 ~~K~K~~~~ 190 (218)
T PF14283_consen 182 FYKPKQEEK 190 (218)
T ss_pred Eeccccccc
Confidence 678876543
No 69
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=26.62 E-value=1e+02 Score=27.25 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=18.4
Q ss_pred CccchhhhHHHH-HHHHHHHHHHHHHHheeee
Q 029005 12 ITHPLIWLIAII-CTILAIAVIIAGIVVFTGY 42 (200)
Q Consensus 12 r~~~~~~~~~~~-~~~l~~lll~~gi~~~i~~ 42 (200)
-++||-...-++ |.-++=++|++|+++|.+|
T Consensus 18 ~kgC~YYlryfFlF~SLIQ~LIIlgLVLFmVY 49 (442)
T PF06637_consen 18 GKGCWYYLRYFFLFVSLIQFLIILGLVLFMVY 49 (442)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345554443333 4455667777888877766
No 70
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=26.62 E-value=76 Score=29.84 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=16.5
Q ss_pred CCccc---hhhhHHHHHHHHHHHHHH
Q 029005 11 RITHP---LIWLIAIICTILAIAVII 33 (200)
Q Consensus 11 ~r~~~---~~~~~~~~~~~l~~lll~ 33 (200)
++.+| |||+.+++|.+.++++++
T Consensus 13 ~~w~~~~~~~~~~~~~c~~~~~~l~~ 38 (642)
T PLN02517 13 KKWSCVDSCCWFIGYICTAWWLLLFL 38 (642)
T ss_pred CcchHHhhhHHHHHHHHHHHHHHHHH
Confidence 34555 789999999887776543
No 71
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=25.44 E-value=45 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=7.7
Q ss_pred HHHHHHHheeeeEEE
Q 029005 31 VIIAGIVVFTGYLVM 45 (200)
Q Consensus 31 ll~~gi~~~i~~l~~ 45 (200)
+++.+|++++.|+.+
T Consensus 77 ~~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 77 AVVGGLVGFLCWWFV 91 (96)
T ss_pred hHHHHHHHHHhheeE
Confidence 344455555666544
No 72
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=25.41 E-value=1.6e+02 Score=19.62 Aligned_cols=8 Identities=50% Similarity=1.066 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 029005 30 AVIIAGIV 37 (200)
Q Consensus 30 lll~~gi~ 37 (200)
.++++|++
T Consensus 54 ~llv~G~~ 61 (82)
T PF11239_consen 54 ALLVAGVV 61 (82)
T ss_pred HHHHHHHH
Confidence 34444443
No 73
>PLN02769 Probable galacturonosyltransferase
Probab=25.13 E-value=87 Score=29.46 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=3.4
Q ss_pred CCCccch
Q 029005 10 RRITHPL 16 (200)
Q Consensus 10 ~~r~~~~ 16 (200)
+||++|.
T Consensus 13 ~~r~~~~ 19 (629)
T PLN02769 13 KRRWRGL 19 (629)
T ss_pred cccccch
Confidence 4455553
No 74
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.66 E-value=25 Score=29.79 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHheeee
Q 029005 26 ILAIAVIIAGIVVFTGY 42 (200)
Q Consensus 26 ~l~~lll~~gi~~~i~~ 42 (200)
+++++++++|+++.++|
T Consensus 154 VI~~iLLIA~iIa~icy 170 (290)
T PF05454_consen 154 VIAAILLIAGIIACICY 170 (290)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444455566666655
No 75
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=24.19 E-value=25 Score=25.44 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=0.0
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHheeeeEEEec
Q 029005 12 ITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHP 47 (200)
Q Consensus 12 r~~~~~~~~~~~~~~l~~lll~~gi~~~i~~l~~rP 47 (200)
|.+|-+.+. +....+++.++++|-++. .|++|.=
T Consensus 25 ~~s~sra~~-vagltvLa~LLiAGQa~T-aYfv~~Q 58 (114)
T PF09307_consen 25 RGSCSRALK-VAGLTVLACLLIAGQAVT-AYFVFQQ 58 (114)
T ss_dssp ------------------------------------
T ss_pred CCCccchhH-HHHHHHHHHHHHHhHHHH-HHHHHHh
Confidence 444433333 333333444555676655 4556543
No 76
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=23.83 E-value=3.1e+02 Score=23.95 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=7.7
Q ss_pred CCCCCccchhhhHH
Q 029005 8 PRRRITHPLIWLIA 21 (200)
Q Consensus 8 p~~~r~~~~~~~~~ 21 (200)
|++|+....+|.+.
T Consensus 13 ~~~~~~~~~~~~~~ 26 (390)
T PRK15136 13 PVKKKGKRKRALLL 26 (390)
T ss_pred CcccccchhHHHHH
Confidence 55555555556553
No 77
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.74 E-value=1.7e+02 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=22.5
Q ss_pred EEEEecCCCeEEEEEeceEEEEEECCEEee--cccccCeee
Q 029005 77 VIRMRNGNAKAGASFSDTSVYLFFDGLKIA--QLVADPFEV 115 (200)
Q Consensus 77 ~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg--~~~~p~f~q 115 (200)
.++++||-. .-+.+...++.. +|..++ ...++||.+
T Consensus 166 ~l~v~Nptp-y~vtl~~~~l~~--~~~~~~~~~~mv~P~s~ 203 (235)
T COG3121 166 LLTVKNPTP-YYVTLANLTLNV--GGRKLGLNSGMVAPFST 203 (235)
T ss_pred EEEEECCCC-cEEEEEEEEEee--CceecCCCcceECCCcc
Confidence 678999976 445565555555 777765 445555544
No 78
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=22.91 E-value=4.2 Score=24.74 Aligned_cols=10 Identities=0% Similarity=-0.410 Sum_probs=4.4
Q ss_pred cchhhhHHHH
Q 029005 14 HPLIWLIAII 23 (200)
Q Consensus 14 ~~~~~~~~~~ 23 (200)
.|||||++|+
T Consensus 25 gcccccc~cc 34 (56)
T TIGR03602 25 GCCCCCCCCC 34 (56)
T ss_pred CeEEEeccEE
Confidence 4544444333
No 79
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.82 E-value=36 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHheeeeEEEecC
Q 029005 26 ILAIAVIIAGIVVFTGYLVMHPR 48 (200)
Q Consensus 26 ~l~~lll~~gi~~~i~~l~~rP~ 48 (200)
++++++.+.+.+++.+|.+..|.
T Consensus 12 i~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 12 ILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred HHHHHHHHHHHHHHHHhHhcCcc
Confidence 34445555666777888888774
No 80
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=22.62 E-value=23 Score=25.38 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=11.6
Q ss_pred eeeeEEE--ecCCcEEEE--EeEEEee
Q 029005 39 FTGYLVM--HPRIPVMSV--VGAHLDL 61 (200)
Q Consensus 39 ~i~~l~~--rP~~P~~~v--~~~~v~~ 61 (200)
+++||++ |-..|.|.| ++-.+..
T Consensus 11 li~~Lv~~~r~~~~vf~i~f~dG~l~~ 37 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEIHFKDGRLRV 37 (108)
T ss_pred HHHHHHHccccCceEEEEEEECCcEEE
Confidence 5566643 444565553 3444443
No 81
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=22.29 E-value=74 Score=29.36 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=12.7
Q ss_pred EEecCCcEEEEEeEEEeeEEe
Q 029005 44 VMHPRIPVMSVVGAHLDLFQY 64 (200)
Q Consensus 44 ~~rP~~P~~~v~~~~v~~~~~ 64 (200)
.++-+=|.+++.=.+=+++..
T Consensus 41 ~~~~~G~~Itl~f~saeGIea 61 (553)
T COG3008 41 HVQDRGPEITLTFESAEGIEA 61 (553)
T ss_pred HHHhcCCeEEEEecCcccccc
Confidence 456677888776544444443
No 82
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.07 E-value=25 Score=25.24 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=5.5
Q ss_pred eeEEEecCC
Q 029005 41 GYLVMHPRI 49 (200)
Q Consensus 41 ~~l~~rP~~ 49 (200)
.|+.+||..
T Consensus 18 yF~~iRPQk 26 (109)
T PRK05886 18 MYFASRRQR 26 (109)
T ss_pred HHHHccHHH
Confidence 345678853
No 83
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.87 E-value=33 Score=29.20 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=9.7
Q ss_pred HHHHHHHheeeeEEEe
Q 029005 31 VIIAGIVVFTGYLVMH 46 (200)
Q Consensus 31 ll~~gi~~~i~~l~~r 46 (200)
++++.++.+|+||++|
T Consensus 265 IliIVLIMvIIYLILR 280 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556677777764
No 84
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=21.52 E-value=64 Score=22.26 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=10.6
Q ss_pred EEEEEeEEEeeEEeCCCc-eEeEEEEEEEEEecCCC
Q 029005 51 VMSVVGAHLDLFQYDEAG-LLETQVTIVIRMRNGNA 85 (200)
Q Consensus 51 ~~~v~~~~v~~~~~~~~~-~l~~~~~~~l~~~NPN~ 85 (200)
.-+...++++++.++++. .+...=.+++.++|.+.
T Consensus 19 ~~~~v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~ 54 (104)
T PF13473_consen 19 AAQTVTITVTDFGFSPSTITVKAGQPVTLTFTNNDS 54 (104)
T ss_dssp -----------EEEES-EEEEETTCEEEEEEEE-SS
T ss_pred ccccccccccCCeEecCEEEEcCCCeEEEEEEECCC
Confidence 333444555555554311 22233345667777654
No 85
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=21.43 E-value=1.8e+02 Score=20.31 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=26.9
Q ss_pred EEEEEecCCCeEEEEEeceEEEEEECCEEeecccccC
Q 029005 76 IVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVADP 112 (200)
Q Consensus 76 ~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p~ 112 (200)
+.|.=+|=.-.+.+.|++.+++.+|+-.+.-...+|+
T Consensus 22 lEl~GenF~pnLkVWFG~veaeTmyR~~e~l~CvvPd 58 (97)
T cd01176 22 LELHGENFTPNLKVWFGDVEAETMYRCEESLLCVVPD 58 (97)
T ss_pred EEEecCcCCCCceEEECCcceEEEEEccceeEEecCC
Confidence 4455666555578999999999999876655555554
No 86
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.32 E-value=76 Score=22.93 Aligned_cols=22 Identities=14% Similarity=0.517 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHheeeeEEEec
Q 029005 26 ILAIAVIIAGIVVFTGYLVMHP 47 (200)
Q Consensus 26 ~l~~lll~~gi~~~i~~l~~rP 47 (200)
+++++++-++++.++++|+++-
T Consensus 67 lii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 67 LIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHheeec
Confidence 3444555566666766776654
No 87
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.31 E-value=1.4e+02 Score=22.78 Aligned_cols=17 Identities=6% Similarity=-0.140 Sum_probs=9.4
Q ss_pred HHHHHHheeeeEEEecC
Q 029005 32 IIAGIVVFTGYLVMHPR 48 (200)
Q Consensus 32 l~~gi~~~i~~l~~rP~ 48 (200)
+++..+++++|.+=+..
T Consensus 21 lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 21 LLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHhcceEEEeeccC
Confidence 44444566777665543
No 88
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=20.93 E-value=17 Score=19.15 Aligned_cols=17 Identities=18% Similarity=0.649 Sum_probs=8.9
Q ss_pred HHHHHHheeeeEEEecC
Q 029005 32 IIAGIVVFTGYLVMHPR 48 (200)
Q Consensus 32 l~~gi~~~i~~l~~rP~ 48 (200)
+.+++++..+|-.+||.
T Consensus 6 l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 6 LAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHhCHH
Confidence 33444455555556775
No 89
>PHA02692 hypothetical protein; Provisional
Probab=20.83 E-value=2e+02 Score=18.86 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=7.9
Q ss_pred CCCCccchhhhHHHH
Q 029005 9 RRRITHPLIWLIAII 23 (200)
Q Consensus 9 ~~~r~~~~~~~~~~~ 23 (200)
+.+++++..|-..++
T Consensus 36 ~~~~~~~~~~~~~ii 50 (70)
T PHA02692 36 ACDRSKGVPWTTVFL 50 (70)
T ss_pred cccccCCcchHHHHH
Confidence 334555666655444
Done!