Query 029005
Match_columns 200
No_of_seqs 101 out of 797
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.5 2.3E-06 7.8E-11 65.7 11.4 103 48-161 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.2 1.3E-06 4.5E-11 65.6 5.1 103 48-161 20-124 (151)
3 3but_A Uncharacterized protein 98.1 5.5E-05 1.9E-09 55.7 12.0 73 71-144 17-90 (136)
4 1wa7_B TIP, hypothetical 28.7 73.5 1.6 5.4E-05 21.8 1.3 10 1-10 5-14 (26)
5 3me0_B PAPG protein; immunoglo 34.3 45 0.0015 23.6 3.7 84 46-130 10-108 (128)
6 3hd7_B Syntaxin-1A; membrane p 32.3 38 0.0013 23.1 3.1 20 17-36 83-102 (109)
7 2l0d_A Cell surface protein; s 31.2 1.3E+02 0.0043 20.6 7.7 40 71-113 18-57 (114)
8 1nrp_R Receptor based peptide 29.4 11 0.00037 18.4 -0.1 14 79-92 7-20 (26)
9 2knc_B Integrin beta-3; transm 28.5 28 0.00096 22.4 1.8 13 30-42 20-32 (79)
10 1nro_R Receptor based peptide 28.3 13 0.00045 18.3 0.1 13 79-91 7-19 (27)
11 3s8f_C Cytochrome C oxidase po 27.5 14 0.00047 20.0 0.1 13 31-43 12-24 (34)
12 3qde_A Cellobiose phosphorylas 24.3 1.1E+02 0.0038 28.3 5.7 60 43-116 742-801 (811)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.45 E-value=2.3e-06 Score=65.67 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=80.1
Q ss_pred CCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeeccccc-CeeecCCceeEEeeE
Q 029005 48 RIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNSSVDFNYV 126 (200)
Q Consensus 48 ~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p-~f~q~~~~t~~~~~~ 126 (200)
+.|.+++.++++.+++.. ..++.+.++++|||. ..+.+..++.++.-+|..++++..+ ++..++++++.+.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vp 116 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVP 116 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEE
Confidence 689999999999887653 378999999999998 8999999999999999999999875 688899999999876
Q ss_pred EEecceecCHHHHHHHHcccc-CCeEEEEEEEEEEE
Q 029005 127 VESRPVPLDPELQEFADTSLK-KDVVRFDLKGGSRT 161 (200)
Q Consensus 127 ~~~~~v~l~~~~~~~l~~d~~-~g~v~~~v~~~~~v 161 (200)
+... ......+.+++. .+.++.+++++..+
T Consensus 117 v~v~-----~~~l~~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 117 VKVA-----YSIAVSLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp EEES-----HHHHHHTCCCCCSSEEECEEEEEEEEE
T ss_pred EEEE-----HHHHHHHHHhcCCCCccceEEEEEEEe
Confidence 6532 222233445553 34677777765443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.22 E-value=1.3e-06 Score=65.60 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=77.1
Q ss_pred CCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeeccccc-CeeecCCceeEEeeE
Q 029005 48 RIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNSSVDFNYV 126 (200)
Q Consensus 48 ~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p-~f~q~~~~t~~~~~~ 126 (200)
+.|.+++.++++.+++. ...++.+.++++|||. ..+.+..++.++.-+|..++++..+ ++..++++++.+.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vp 93 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP 93 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEE
Confidence 67889999988877543 3468999999999998 8999999999999999999999875 688899999988875
Q ss_pred EEecceecCHHHHHHHHccc-cCCeEEEEEEEEEEE
Q 029005 127 VESRPVPLDPELQEFADTSL-KKDVVRFDLKGGSRT 161 (200)
Q Consensus 127 ~~~~~v~l~~~~~~~l~~d~-~~g~v~~~v~~~~~v 161 (200)
+... -.....+..++ ..+.++.+++++..+
T Consensus 94 v~v~-----~~~l~~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 94 VVVP-----YSILFNLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp CCEE-----HHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred EEEE-----HHHHHHHHHhcccCCcccEEEEEEEEE
Confidence 5422 12222233333 345788887766544
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.12 E-value=5.5e-05 Score=55.68 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=60.0
Q ss_pred eEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeeccc-ccCeeecCCceeEEeeEEEecceecCHHHHHHHHc
Q 029005 71 ETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLV-ADPFEVSKNSSVDFNYVVESRPVPLDPELQEFADT 144 (200)
Q Consensus 71 ~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~-~p~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~ 144 (200)
...+.+.+.+.|||. +.+.++.+..+++..|..+|++. ...+..++.+++.+.+.+..+.-.+.....+-+++
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~n 90 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIAN 90 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHHT
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhhc
Confidence 467899999999997 89999999999999999999997 67899999998888887776655555555555543
No 4
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=73.51 E-value=1.6 Score=21.82 Aligned_cols=10 Identities=50% Similarity=0.952 Sum_probs=8.5
Q ss_pred CCCCCCCCCC
Q 029005 1 MPPKFFPPRR 10 (200)
Q Consensus 1 ~~~~~~~p~~ 10 (200)
||||.+|||-
T Consensus 5 ~P~P~LPpRP 14 (26)
T 1wa7_B 5 MPTPPLPPRP 14 (26)
T ss_dssp CCCCCCCCCT
T ss_pred CCCCCCCCCc
Confidence 8999998884
No 5
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=34.28 E-value=45 Score=23.62 Aligned_cols=84 Identities=7% Similarity=0.116 Sum_probs=45.0
Q ss_pred ecCCcEEEEEeEEEeeEEeCCC---ceEe----EEEEEEEEEecC------C-CeEEEEEe-ceEEEEEECCEEeecccc
Q 029005 46 HPRIPVMSVVGAHLDLFQYDEA---GLLE----TQVTIVIRMRNG------N-AKAGASFS-DTSVYLFFDGLKIAQLVA 110 (200)
Q Consensus 46 rP~~P~~~v~~~~v~~~~~~~~---~~l~----~~~~~~l~~~NP------N-~~~~i~y~-~~~v~v~Y~~~~lg~~~~ 110 (200)
||..|+++++.-+++.=++... ..++ ..+++.+.+..+ | .++.+-.+ ..+..++-+|+..++..+
T Consensus 10 ~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~~ 89 (128)
T 3me0_B 10 RPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETTM 89 (128)
T ss_dssp EECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEEE
T ss_pred CCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEECCeeccceeE
Confidence 7888888887655543222210 1111 112333333221 1 33445544 477888889998888777
Q ss_pred cCeeecCCceeEEeeEEEec
Q 029005 111 DPFEVSKNSSVDFNYVVESR 130 (200)
Q Consensus 111 p~f~q~~~~t~~~~~~~~~~ 130 (200)
.|+.....+.++...+.+.
T Consensus 90 -~~~~~~s~tvtV~S~L~g~ 108 (128)
T 3me0_B 90 -RWYKAGTQNLTIGSRLYGE 108 (128)
T ss_dssp -EESSSEEEEEEEEEEEEEC
T ss_pred -EEEecCCcEEEEEEEEecC
Confidence 4444444466666666444
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=32.34 E-value=38 Score=23.06 Aligned_cols=20 Identities=20% Similarity=-0.019 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 029005 17 IWLIAIICTILAIAVIIAGI 36 (200)
Q Consensus 17 ~~~~~~~~~~l~~lll~~gi 36 (200)
++..++++.+++++++++++
T Consensus 83 rkk~~i~l~~~~i~~~i~~~ 102 (109)
T 3hd7_B 83 RRKKIMIIICCVILGIIIAS 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceehHHHHHHHHHHHHH
Confidence 34444443333333333333
No 7
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=31.16 E-value=1.3e+02 Score=20.63 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=28.9
Q ss_pred eEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeecccccCe
Q 029005 71 ETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVADPF 113 (200)
Q Consensus 71 ~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p~f 113 (200)
+-..+++++++|.-.... ..+.+.++-+|..++...+++.
T Consensus 18 ~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~L 57 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTSL 57 (114)
T ss_dssp TSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESCB
T ss_pred CCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceecccc
Confidence 345678889999865332 4578888889999888776553
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=29.42 E-value=11 Score=18.44 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=9.3
Q ss_pred EEecCCCeEEEEEe
Q 029005 79 RMRNGNAKAGASFS 92 (200)
Q Consensus 79 ~~~NPN~~~~i~y~ 92 (200)
..+|||.|..-.++
T Consensus 7 llrnpndkyepfwe 20 (26)
T 1nrp_R 7 LLRNPNDKYEPFWE 20 (26)
T ss_pred hhcCCCcccCcccc
Confidence 46899987554443
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.47 E-value=28 Score=22.44 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=8.3
Q ss_pred HHHHHHHHheeee
Q 029005 30 AVIIAGIVVFTGY 42 (200)
Q Consensus 30 lll~~gi~~~i~~ 42 (200)
.++++|++++++|
T Consensus 20 gilliGllllliw 32 (79)
T 2knc_B 20 AILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555677776666
No 10
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=28.32 E-value=13 Score=18.29 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=8.7
Q ss_pred EEecCCCeEEEEE
Q 029005 79 RMRNGNAKAGASF 91 (200)
Q Consensus 79 ~~~NPN~~~~i~y 91 (200)
..+|||.|..-.+
T Consensus 7 llrnpndkyepfw 19 (27)
T 1nro_R 7 LLRNPNDKYEPFW 19 (27)
T ss_pred cccCCCcccCccc
Confidence 4689998754443
No 11
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=27.52 E-value=14 Score=20.00 Aligned_cols=13 Identities=8% Similarity=0.450 Sum_probs=7.0
Q ss_pred HHHHHHHheeeeE
Q 029005 31 VIIAGIVVFTGYL 43 (200)
Q Consensus 31 ll~~gi~~~i~~l 43 (200)
++++|++++++|+
T Consensus 12 V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 12 ILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555554
No 12
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=24.27 E-value=1.1e+02 Score=28.27 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=38.5
Q ss_pred EEEecCCcEEEEEeEEEeeEEeCCCceEeEEEEEEEEEecCCCeEEEEEeceEEEEEECCEEeecccccCeeec
Q 029005 43 LVMHPRIPVMSVVGAHLDLFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVADPFEVS 116 (200)
Q Consensus 43 l~~rP~~P~~~v~~~~v~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~y~~~~v~v~Y~~~~lg~~~~p~f~q~ 116 (200)
|.+.|..|.. +++++++ +++.. -.+.++++||+.. . +....+.-+|+.+....+|-+..+
T Consensus 742 L~i~P~LP~~-w~~~~~~-~~~~g-------~~~~I~v~~~~~~-~----~~~~~~~~dg~~~~~~~i~~~~~~ 801 (811)
T 3qde_A 742 LKIDPCIPKA-WDGYKVT-RYFRG-------STYEITVKNPNHV-S----KGVAKITVDGNEISGNILPVFNDG 801 (811)
T ss_dssp EEECCBCCTT-CCEEEEE-EEETT-------EEEEEEEECTTCC-S----BCEEEEEETTEECSSSBCCCCCSS
T ss_pred EEEeCcCCcc-cCcEEEE-EEECC-------EEEEEEEEccCCC-C----CCcEEEEECCEECcCCeeeecCCC
Confidence 5678988876 7777776 45532 1456677899752 1 234567779998866666654444
Done!