BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029006
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OE7|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 137
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
S L + F LP+ + S EV V +PA +G++GVL HVPT+ +L PGV+ V +G+++KK
Sbjct: 7 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 66
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
+F+S GFA + +S + A+EA P++ ++ LAE + +SS+ E AEA I
Sbjct: 67 FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQ 125
Query: 188 VDVHSALNSAL 198
V+V L S L
Sbjct: 126 VEVLENLQSVL 136
>pdb|4B2Q|H Chain H, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|HH Chain h, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 132
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
S L + F LP+ + S EV V +PA +G++GVL HVPT+ +L PGV+ V +G+++KK
Sbjct: 2 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 61
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
+F+S GFA + +S + A+EA P++ ++ LAE + +SS+ E AEA I
Sbjct: 62 FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQ 120
Query: 188 VDVHSALNSAL 198
V+V L S L
Sbjct: 121 VEVLENLQSVL 131
>pdb|2HLD|H Chain H, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Q Chain Q, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Z Chain Z, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|H Chain H, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Q Chain Q, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Z Chain Z, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|H Chain H, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|H Chain H, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|H Chain H, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|R Chain R, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 138
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
S L + F LP+ + S EV V +PA +G++GVL HVPT+ +L PGV+ V +G+++KK
Sbjct: 8 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 67
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
+F+S GFA + +S + A+EA P++ ++ LAE + +SS+ E AEA I
Sbjct: 68 FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQ 126
Query: 188 VDVHSALNSAL 198
V+V L S L
Sbjct: 127 VEVLENLQSVL 137
>pdb|2XOK|H Chain H, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 160
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
L + F LP+ + S EV V +PA +G++GVL HVPT+ +L PGV+ V +G+++KK+F
Sbjct: 32 LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFF 91
Query: 130 VSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVD 189
+S GFA + +S + A+EA P++ ++ LAE + +SS+ E AEA I V+
Sbjct: 92 ISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQVE 150
Query: 190 VHSALNSAL 198
V L S L
Sbjct: 151 VLENLQSVL 159
>pdb|2XND|H Chain H, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 131
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTK 126
+++ F P ++ V V VP TG G+L HVPT+ L+PG++ VH DG T
Sbjct: 1 QMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGT-TS 59
Query: 127 KYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQI 186
KYFVSSG ++A+S ++A EAV +D +D + L + +L A + +AE QI
Sbjct: 60 KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 119
Query: 187 GVDVHSALNSAL 198
++ + AL AL
Sbjct: 120 RIEANEALVKAL 131
>pdb|2W6I|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6H|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 168
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTKK 127
++ F P ++ V V VP TG G+L HVPT+ L+PG++ VH DG T K
Sbjct: 38 MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGT-TSK 96
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
YFVSSG ++A+S ++A EAV +D +D + L + +L A + +AE QI
Sbjct: 97 YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIR 156
Query: 188 VDVHSALNSAL 198
++ + AL AL
Sbjct: 157 IEANEALVKAL 167
>pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8E|H Chain H, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|2CK3|H Chain H, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|H Chain H, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2V7Q|H Chain H, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|H Chain H, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|Q Chain Q, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|H Chain H, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 146
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTKK 127
++ F P ++ V V VP TG G+L HVPT+ L+PG++ VH DG T K
Sbjct: 16 MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGT-TSK 74
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
YFVSSG ++A+S ++A EAV +D +D + L + +L A + +AE QI
Sbjct: 75 YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIR 134
Query: 188 VDVHSALNSAL 198
++ + AL AL
Sbjct: 135 IEANEALVKAL 145
>pdb|2RQ7|A Chain A, Solution Structure Of The Epsilon Subunit Chimera
Combining The N-Terminal Beta-Sandwich Domain From T.
Elongatus Bp-1 F1 And The C-Terminal Alpha-Helical
Domain From Spinach Chloroplast F1
Length = 134
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 90 VIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVE 149
VI+P++TGQ+G+L H P + L+ GV+ V + + GFA + N V I+
Sbjct: 22 VILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVT-ILVNG 80
Query: 150 AVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAE-AQIGVDVHSALNSALT 199
A D IDP E Q L A +L KAE A+ ++ + AL A T
Sbjct: 81 AERGDTIDPQ-------EAQQTLEIAEANLRKAEGARQKIEANLALRRART 124
>pdb|2E5Y|A Chain A, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From
The Thermophilic Bacillus Ps3
pdb|2E5Y|B Chain B, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From
The Thermophilic Bacillus Ps3
Length = 133
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 86 EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADI 145
+V+MV V A +G++G+LPGH+P +A L+ + G T+ VS GF + + V I
Sbjct: 19 DVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVRPDKVT-I 77
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNS 196
+A A + ID + ++L S D++ A++ + A+N
Sbjct: 78 LAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELA--LKRAMNR 126
>pdb|2RQ6|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-Atpase
From Thermosynechococcus Elongatus Bp-1
Length = 138
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 90 VIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADII 146
VI+P++TGQ+G+L H P + L+ GV+ V + + GFA + N V ++
Sbjct: 22 VILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILV 78
>pdb|2QE7|H Chain H, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 135
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 86 EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADI 145
E D+VI G++GV+ GH+P + LK + + G+ VS GF + + V +I
Sbjct: 19 EADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPDKV-NI 77
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFN---QKLSSATTD-------LEKAEAQIGV 188
+A A ++ID +K A ++L D LE+AE ++ V
Sbjct: 78 LADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEVRLQV 130
>pdb|1QO1|J Chain J, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1AQT|A Chain A, Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli
Length = 138
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 87 VDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKY-FVSSGFAFIHANSVADI 145
V+ + V S G++G+ PGH P + +KPG++ + + +++ ++S G + +V +
Sbjct: 20 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVT-V 78
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 184
+A A+ +D + + + + +SS+ D++ A+A
Sbjct: 79 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQA 117
>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of The
Subunit Relative To The Beta Subunits Of The Complex
pdb|1BSN|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of The
Subunit Relative To The Beta Subunits Of The Complex
pdb|1FS0|E Chain E, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
pdb|3OAA|H Chain H, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|P Chain P, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|X Chain X, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|FF Chain f, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 138
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 87 VDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKY-FVSSGFAFIHANSVADI 145
V+ + V S G++G+ PGH P + +KPG++ + + +++ ++S G + +V +
Sbjct: 20 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVT-V 78
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 184
+A A+ +D + + + + +SS+ D++ A+A
Sbjct: 79 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQA 117
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 113 KPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQ 170
PG +H D + + +GFA + A VAD+ A VP D + GL+E NQ
Sbjct: 445 NPGPWFLHCHID---FHLEAGFAIVFAEDVADVKAANPVPKAWSDLCPIYDGLSEANQ 499
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 45 NMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEV---DMVIVPASTGQMGV 101
+ P K P P+ + P++ K TV V+PY ++ AKEV VIV A +
Sbjct: 155 DRHPIKDPRYKHIPKRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRA 214
Query: 102 LPGHVPTIAE 111
L + ++E
Sbjct: 215 LVKYFDNLSE 224
>pdb|4DWE|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03992)
From Bacteroides Ovatus Atcc 8483 At 2.01 A Resolution
Length = 480
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 74 FVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTI 109
F+ P+ +E + KE+++ I + Q+G L +PT+
Sbjct: 34 FIYPFGNETADKEIEITIHLKADRQVGYLYTEIPTL 69
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 67 PSKLTVNFVLPYASELSAKEVDMV------IVPASTGQMGVLPGHVPTIAEL 112
P LT +PYA + + VD+V IVPA +M V PG+ AEL
Sbjct: 223 PDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPA---RMNVYPGYQVPFAEL 271
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|C Chain C, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|D Chain D, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIX|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
pdb|2BIX|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
Length = 490
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 116 VLSVHDGNDTKKYFVSSGFAFIHANS-------VADIIAVEAVPIDQID 157
+L DG + K+ V +GF F HAN+ + D I ++P Q+D
Sbjct: 283 ILVPRDGGEIKRIPVQAGFVFHHANAFEENGKIILDSICYNSLP--QVD 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,236,499
Number of Sequences: 62578
Number of extensions: 201480
Number of successful extensions: 402
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 19
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)