Query 029006
Match_columns 200
No_of_seqs 178 out of 1192
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:59:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1758 Mitochondrial F1F0-ATP 100.0 1.6E-38 3.4E-43 255.6 16.5 139 61-199 20-159 (159)
2 CHL00063 atpE ATP synthase CF1 100.0 3.5E-35 7.5E-40 233.7 17.5 128 69-198 2-129 (134)
3 PRK00539 atpC F0F1 ATP synthas 100.0 5.6E-35 1.2E-39 232.6 17.0 127 68-196 2-129 (133)
4 PRK13446 atpC F0F1 ATP synthas 100.0 1.2E-34 2.6E-39 231.1 17.0 129 68-198 3-131 (136)
5 PRK00571 atpC F0F1 ATP synthas 100.0 1.5E-34 3.3E-39 229.6 17.3 130 68-199 2-132 (135)
6 PRK13450 atpC F0F1 ATP synthas 100.0 1.8E-34 3.8E-39 229.1 17.1 129 67-198 1-130 (132)
7 PRK14736 atpC F0F1 ATP synthas 100.0 2.1E-34 4.6E-39 229.4 16.7 128 69-198 3-131 (133)
8 PRK13452 atpC F0F1 ATP synthas 100.0 2.7E-34 5.8E-39 231.7 17.5 130 67-198 3-133 (145)
9 TIGR01216 ATP_synt_epsi ATP sy 100.0 2.8E-34 6E-39 227.0 17.0 128 69-198 1-129 (130)
10 PRK14735 atpC F0F1 ATP synthas 100.0 3.3E-34 7.2E-39 229.5 17.2 128 69-198 2-129 (139)
11 PRK13448 atpC F0F1 ATP synthas 100.0 2.3E-33 5E-38 223.8 17.4 127 69-198 3-129 (135)
12 COG0355 AtpC F0F1-type ATP syn 100.0 4.3E-33 9.4E-38 222.5 16.7 127 70-198 4-132 (135)
13 PRK13444 atpC F0F1 ATP synthas 100.0 1E-32 2.2E-37 217.7 16.4 104 69-174 5-108 (127)
14 PRK13443 atpC F0F1 ATP synthas 100.0 7.4E-32 1.6E-36 215.6 15.9 109 68-178 3-111 (136)
15 PRK13451 atpC F0F1 ATP synthas 100.0 9.4E-32 2E-36 204.9 12.4 100 70-171 1-100 (101)
16 PRK01474 atpC F0F1 ATP synthas 100.0 2.1E-31 4.6E-36 206.2 13.9 105 68-174 3-110 (112)
17 PRK06228 F0F1 ATP synthase sub 100.0 1.7E-27 3.6E-32 189.4 15.2 101 69-173 2-104 (131)
18 TIGR03166 alt_F1F0_F1_eps alte 99.9 1.2E-26 2.7E-31 182.3 14.6 99 71-173 1-101 (122)
19 PRK13447 F0F1 ATP synthase sub 99.9 3E-26 6.5E-31 183.3 15.3 99 70-172 1-102 (136)
20 PRK13442 atpC F0F1 ATP synthas 99.9 2.2E-26 4.7E-31 171.6 11.6 85 67-153 3-88 (89)
21 PRK13449 atpC F0F1 ATP synthas 99.9 7E-26 1.5E-30 168.7 11.9 84 68-153 2-87 (88)
22 PF02823 ATP-synt_DE_N: ATP sy 99.9 5.6E-25 1.2E-29 160.0 11.2 79 70-150 1-80 (80)
23 PF00401 ATP-synt_DE: ATP synt 97.9 3.1E-05 6.7E-10 51.5 5.0 46 154-199 1-46 (48)
24 PRK10579 hypothetical protein; 77.8 18 0.00039 27.5 7.6 61 81-141 6-77 (94)
25 KOG3514 Neurexin III-alpha [Si 45.7 55 0.0012 35.1 6.3 77 51-129 445-528 (1591)
26 PF06865 DUF1255: Protein of u 42.2 1.5E+02 0.0033 22.5 7.9 62 81-142 6-78 (94)
27 PF11471 Sugarporin_N: Maltopo 32.7 43 0.00093 23.2 2.3 26 161-186 30-55 (60)
28 PF02046 COX6A: Cytochrome c o 28.4 27 0.00058 27.4 0.8 8 1-8 1-8 (116)
29 PF06347 SH3_4: Bacterial SH3 26.0 1.5E+02 0.0032 19.2 4.0 27 105-131 14-42 (55)
30 COG1579 Zn-ribbon protein, pos 22.6 1.7E+02 0.0036 25.8 4.7 44 155-198 65-108 (239)
31 COG1795 Formaldehyde-activatin 21.9 42 0.00091 27.9 0.8 15 103-117 43-57 (170)
32 PRK09859 multidrug efflux syst 21.5 4.3E+02 0.0093 23.9 7.5 19 122-140 69-87 (385)
33 KOG0481 DNA replication licens 20.7 2.6E+02 0.0056 28.1 6.0 50 117-168 406-455 (729)
No 1
>KOG1758 consensus Mitochondrial F1F0-ATP synthase, subunit delta/ATP16 [Energy production and conversion]
Probab=100.00 E-value=1.6e-38 Score=255.57 Aligned_cols=139 Identities=52% Similarity=0.725 Sum_probs=129.2
Q ss_pred CCCCCCCCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEE-EEEecccEEEEEC
Q 029006 61 QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK-KYFVSSGFAFIHA 139 (200)
Q Consensus 61 ~~~~~~~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~-~~~VsgGf~~V~~ 139 (200)
|++.+.+++|+|.|.+|++.+|...+|++|.+||.+|+||||+||+|+|+.|+||++.|+.+++++ +|||||||+.++.
T Consensus 20 p~a~s~~~~L~l~fa~P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~~~~~k~FvSsGfa~v~~ 99 (159)
T KOG1758|consen 20 PAAASIPEKLKLTFALPNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKSKYFVSSGFATVNA 99 (159)
T ss_pred cccccCCceeEEEEecCceEEecCceeEEEeccccCcceeeecccCcchheeccceEEEEeCCCcEEEEEEecceEEEcC
Confidence 356778999999999999987755599999999999999999999999999999999999976666 9999999999996
Q ss_pred CeEEEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 140 NSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 140 n~v~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
|+..+|++.+++++|+||.+.+++.|++++++|.+++|+.++++|+|+++++++|++||+
T Consensus 100 ds~~~ila~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al~ 159 (159)
T KOG1758|consen 100 DSSLQILAEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAEAQIRVEVAEALVKALK 159 (159)
T ss_pred CCeEEEEehhccccccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhC
Confidence 655559999999999999999999999999999999999999999999999999999985
No 2
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=100.00 E-value=3.5e-35 Score=233.72 Aligned_cols=128 Identities=29% Similarity=0.415 Sum_probs=121.8
Q ss_pred eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV 148 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~ 148 (200)
+|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+.++++++|+|+|||++|.+|+|+ |+++
T Consensus 2 ~l~l~IvtP~~~~~-~~~v~~V~~p~~~G~~gIL~~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~-Il~~ 79 (134)
T CHL00063 2 TLNLRVLTPNRIVW-DSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEIT-ILVN 79 (134)
T ss_pred eEEEEEEcCCceEE-eeeEEEEEEEcCccCceecCCCcceEeEecceEEEEEECCeEEEEEEcceEEEEECCEEE-EEEC
Confidence 59999999999755 899999999999999999999999999999999999888888899999999999999998 9999
Q ss_pred ceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 149 EAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 149 ~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
.+++.+|||.+++++++++|+++|++..++.++.+++++|+++.++++++
T Consensus 80 ~a~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ra~arl~~~ 129 (134)
T CHL00063 80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAI 129 (134)
T ss_pred eeEchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999988764
No 3
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=5.6e-35 Score=232.61 Aligned_cols=127 Identities=15% Similarity=0.171 Sum_probs=119.6
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII 146 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il 146 (200)
++|+|+|+||++.+ |+++|++|++||++|+|||||||+|+|+.|.||+++|+. +++++.|+|+|||++|.+|+|+ |+
T Consensus 2 ~~~~l~IvTP~~~~-~~~~v~~V~l~t~~G~~gIL~~Haplit~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n~v~-Il 79 (133)
T PRK00539 2 QMLRFLVLSPSGIK-LDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAK-IF 79 (133)
T ss_pred CccEEEEEcCCCeE-EeceEEEEEEecCccCceecCCCcceEeEecceEEEEEECCCcEEEEEEeeeEEEEECCEEE-EE
Confidence 47999999999975 589999999999999999999999999999999999987 7778889999999999999998 99
Q ss_pred ccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHh
Q 029006 147 AVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNS 196 (200)
Q Consensus 147 a~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~ 196 (200)
++.|++.+|||.+++++++++|+++|++.+++.++.+||..|.++.+.++
T Consensus 80 ad~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~Rl~ 129 (133)
T PRK00539 80 TENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELLKLS 129 (133)
T ss_pred ECeEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888899999999999988765
No 4
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.2e-34 Score=231.05 Aligned_cols=129 Identities=30% Similarity=0.419 Sum_probs=121.9
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEc
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIA 147 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila 147 (200)
++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|.||+++|+.+++++.|+|+|||++|.+|+|+ |++
T Consensus 3 ~~l~l~IvTP~~~~-~~~~v~~V~lpt~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~-Il~ 80 (136)
T PRK13446 3 KKLKLEIVTPEKKV-LSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVT-VLA 80 (136)
T ss_pred CccEEEEEcCCceE-EeeeEEEEEEEcCccCeEEcCCCcceEEEeeccEEEEEeCCcEEEEEEcCEEEEEECCEEE-EEe
Confidence 57999999999976 4899999999999999999999999999999999999888888899999999999999998 999
Q ss_pred cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
+.|++.++||.+++++++++|+++|++.+++.++.+++++|+.+.+.+.+.
T Consensus 81 ~~a~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~a~~rl~~~ 131 (136)
T PRK13446 81 ETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQVA 131 (136)
T ss_pred eeEEEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888899999999999999987754
No 5
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=1.5e-34 Score=229.58 Aligned_cols=130 Identities=29% Similarity=0.474 Sum_probs=122.8
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII 146 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il 146 (200)
++|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||++|.+|.|+ |+
T Consensus 2 ~~l~l~ivtP~~~~~-~~~v~~v~~~~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n~v~-Il 79 (135)
T PRK00571 2 ATLTVDIVSPEGLIY-SGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVT-VL 79 (135)
T ss_pred CeEEEEEEcCCCcEE-eeeEEEEEEEcCccCeeecCCCcceEEEeeceEEEEEECCCcEEEEEEccEEEEEECCEEE-EE
Confidence 479999999999765 89999999999999999999999999999999999998 6778899999999999999998 99
Q ss_pred ccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 147 AVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 147 a~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
++.+++.++||.+++++++++|+++|++..++.++.+++++|+++.+.+.+..
T Consensus 80 a~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~~ 132 (135)
T PRK00571 80 ADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAE 132 (135)
T ss_pred EeeEEEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988889999999999999999888753
No 6
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.8e-34 Score=229.14 Aligned_cols=129 Identities=23% Similarity=0.326 Sum_probs=120.6
Q ss_pred CCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEE
Q 029006 67 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADI 145 (200)
Q Consensus 67 ~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~I 145 (200)
+++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||++|.+|+|+ |
T Consensus 1 ~~~l~l~IvtP~~~~-~~~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gGf~~v~~~~v~-I 78 (132)
T PRK13450 1 ANNIKLTILTPEKNF-YIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVY-I 78 (132)
T ss_pred CCeEEEEEEcCCceE-EeceEEEEEEECCccCceecCCCcccEeEEccEEEEEEECCCcEEEEEEcCeEEEEECCEEE-E
Confidence 367999999999975 589999999999999999999999999999999999987 7888899999999999999998 9
Q ss_pred EccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 146 la~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
+++.+++.++||.+++++++++|+++| +..++.++.+++.+|+++.+.+++.
T Consensus 79 l~~~a~~~~~ID~~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~rl~~~ 130 (132)
T PRK13450 79 LCDASEWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIARIKLK 130 (132)
T ss_pred EehhhcccccCCHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999 5668888999999999999988764
No 7
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=2.1e-34 Score=229.36 Aligned_cols=128 Identities=26% Similarity=0.486 Sum_probs=121.6
Q ss_pred eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEc
Q 029006 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIA 147 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila 147 (200)
+|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||++|.+|+|+ |++
T Consensus 3 ~~~l~IvTP~~~~~-~~~v~~V~vp~~~G~~gILp~H~P~it~L~~G~l~i~~~~~~~~~~~v~gGf~eV~~n~v~-Ila 80 (133)
T PRK14736 3 TFHFDLVGPERTLY-SGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVT-VLA 80 (133)
T ss_pred ceEEEEEcCCccEE-eeeeEEEEEecCccCeeEcCCChhhEeEecceEEEEEECCCcEEEEEEeceEEEEECCEEE-EEe
Confidence 69999999999754 79999999999999999999999999999999999987 7788899999999999999998 999
Q ss_pred cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
+.+++.++||.+++++++++|++.|+++.++..++.+++.+.++++....|
T Consensus 81 ~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (133)
T PRK14736 81 ERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEAKATL 131 (133)
T ss_pred eeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998889999999999999999988765
No 8
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=2.7e-34 Score=231.72 Aligned_cols=130 Identities=25% Similarity=0.356 Sum_probs=120.6
Q ss_pred CCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEE
Q 029006 67 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADII 146 (200)
Q Consensus 67 ~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Il 146 (200)
-++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |+
T Consensus 3 ~~~l~l~IvtP~~~~-~~g~v~~V~lp~~~G~~GILp~H~plit~L~~G~l~i~~~~~~~~~~v~gGf~eV~~n~v~-Il 80 (145)
T PRK13452 3 KKYLKVDVVSPLGSV-FKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVT-IM 80 (145)
T ss_pred ccEEEEEEEcCCceE-EeceeEEEEEEcCccCeEecCCCcceEeeecceEEEEEECCcEEEEEEcceEEEEECCEEE-EE
Confidence 478999999999975 5899999999999999999999999999999999999887788889999999999999998 99
Q ss_pred ccceecCCCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 147 AVEAVPIDQIDPSLVQKGLAEFNQKLSS-ATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 147 a~~a~~~deID~~~a~~~l~~Ae~~L~~-~~~~~eka~aqi~le~~~al~~al 198 (200)
++.+++.++||.+++++++++|+++|++ ..++.++.+++..|+++.+.+.++
T Consensus 81 ad~ae~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~ 133 (145)
T PRK13452 81 VDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKAL 133 (145)
T ss_pred eCeeeccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 446677888999999999988764
No 9
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=100.00 E-value=2.8e-34 Score=226.98 Aligned_cols=128 Identities=38% Similarity=0.557 Sum_probs=121.8
Q ss_pred eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEc
Q 029006 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIA 147 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila 147 (200)
+|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|.||+++|+. ++.+++|+|+|||++|.+|+|+ |++
T Consensus 1 ~~~l~IvtP~~~~-~~~~v~~v~~~t~~G~~giL~~H~p~i~~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~~v~-Il~ 78 (130)
T TIGR01216 1 TLKLEIVTPEGEI-YSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVT-ILA 78 (130)
T ss_pred CEEEEEEcCCceE-EeeeEEEEEEECCcCCeeecCCChhhEeEecceEEEEEECCCCEEEEEEcCcEEEEECCEEE-EEE
Confidence 5899999999975 579999999999999999999999999999999999996 7788999999999999999998 999
Q ss_pred cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
+++++.++||.+++++.+++|+++|++..++.++.+++++|+++++++++.
T Consensus 79 ~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~ 129 (130)
T TIGR01216 79 DGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEAL 129 (130)
T ss_pred eEEEEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998888999999999999999998875
No 10
>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=3.3e-34 Score=229.52 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=120.3
Q ss_pred eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV 148 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~ 148 (200)
+|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++..|+|+|||++|.+|+|+ |+++
T Consensus 2 ~l~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~P~it~L~~G~v~i~~~g~~~~~~v~gGf~ev~~~~v~-Ila~ 79 (139)
T PRK14735 2 PIHLEIVTAERVV-LSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVT-ILAD 79 (139)
T ss_pred eEEEEEECCCccE-EeeeEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCeEEEEEEcccEEEEeCCEEE-EEee
Confidence 5899999999975 5899999999999999999999999999999999999888888899999999999999998 9999
Q ss_pred ceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 149 EAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 149 ~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
.|++.++||.+++++++++|+++|++..++.++.+++..|.++.+.+.+.
T Consensus 80 ~a~~~edID~~~a~~a~e~Ae~~l~~~~~~~~~~~a~~~L~ra~arl~~~ 129 (139)
T PRK14735 80 TAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVA 129 (139)
T ss_pred eEEEcccCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888999999999998877753
No 11
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=2.3e-33 Score=223.78 Aligned_cols=127 Identities=27% Similarity=0.454 Sum_probs=115.6
Q ss_pred eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV 148 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~ 148 (200)
+|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |+++
T Consensus 3 ~~~l~IvtPe~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~pG~v~i~~~~~~~~~~v~gGf~eV~~~~v~-Ila~ 80 (135)
T PRK13448 3 TFHFDLVSPEKLA-FSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLT-VLAD 80 (135)
T ss_pred eeEEEEEcCCccE-EeeeEEEEEEEcCccCeEEcCCCcceEeEeccEEEEEEECCcEEEEEEeccEEEEECCEEE-EEEe
Confidence 6999999999975 4799999999999999999999999999999999999887777889999999999999998 9999
Q ss_pred ceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 149 EAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 149 ~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
.+++.+|||.+++++++++|+++|++.. +.+..+|..+|++++++..+|
T Consensus 81 ~a~~~~dID~~~a~~~~~~Ae~~l~~~~-~~~l~ra~~rl~~~~~~~~~~ 129 (135)
T PRK13448 81 VATSVADLDLAQFAATIAEMEAQLAGKV-GDELDRAIERLDHFKSIQHQL 129 (135)
T ss_pred eeEEcccCCHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998643 345666666788899988876
No 12
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=100.00 E-value=4.3e-33 Score=222.47 Aligned_cols=127 Identities=31% Similarity=0.479 Sum_probs=116.6
Q ss_pred eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-C-CeEEEEEecccEEEEECCeEEEEEc
Q 029006 70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-G-NDTKKYFVSSGFAFIHANSVADIIA 147 (200)
Q Consensus 70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~-~~~~~~~VsgGf~~V~~n~v~~Ila 147 (200)
|+|+||||++.+| +++|++|++||++|+|||||||+|+|+.|+||+++|+. + +++..|+|+|||++|.++.|+ |++
T Consensus 4 l~l~IVsP~~~i~-~g~v~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~~~~vt-Ila 81 (135)
T COG0355 4 LKLEIVSPEGIIY-SGEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQPNEVT-ILA 81 (135)
T ss_pred eEEEEEcCCceEE-eeEEEEEEEecCCeeeecCCCCccceeeecCcEEEEEEcCCCceEEEEEeccEEEEeCCEEE-EEE
Confidence 9999999999765 89999999999999999999999999999999999998 4 355799999999999999998 999
Q ss_pred cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
+.|++.+|||.+++++++++|++.|++..++.++.+++.+|.+.-+.+.+.
T Consensus 82 d~A~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~~~ 132 (135)
T COG0355 82 DSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLRVA 132 (135)
T ss_pred ceeEecccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999998877778888888888777766653
No 13
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1e-32 Score=217.73 Aligned_cols=104 Identities=35% Similarity=0.500 Sum_probs=99.9
Q ss_pred eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV 148 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~ 148 (200)
+|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.++++..|+|+|||++|.+|+|+ |+++
T Consensus 5 ~~~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~-Il~~ 82 (127)
T PRK13444 5 KLTVSVISPEKIL-YKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQIS-ILTD 82 (127)
T ss_pred ceEEEEEcCCceE-EeceEEEEEEECCccCeEecCCCcCeEeEeccEEEEEEECCeEEEEEEeceEEEEECCEEE-EEEe
Confidence 6999999999975 5799999999999999999999999999999999999888888899999999999999998 9999
Q ss_pred ceecCCCCCHHHHHHHHHHHHHHHhc
Q 029006 149 EAVPIDQIDPSLVQKGLAEFNQKLSS 174 (200)
Q Consensus 149 ~a~~~deID~~~a~~~l~~Ae~~L~~ 174 (200)
.+++.+|||.+++++++++|+++|++
T Consensus 83 ~a~~~~diD~~~a~~~~~~Ae~~l~~ 108 (127)
T PRK13444 83 HGALKEDIDHEHEKKLLAEAEKLPPS 108 (127)
T ss_pred EEEehhhCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999986
No 14
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=7.4e-32 Score=215.60 Aligned_cols=109 Identities=30% Similarity=0.560 Sum_probs=100.7
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEc
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIA 147 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila 147 (200)
++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |++
T Consensus 3 ~~l~l~IVTP~~~~-~~gev~~V~lpt~~Ge~GILp~H~Plit~L~pG~v~i~~~~~~~~~avsgGf~eV~~n~V~-Ila 80 (136)
T PRK13443 3 GTLQFDLVSPERRL-ASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSIS-VLA 80 (136)
T ss_pred CeeEEEEEcCCceE-EeceEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCCeEEEEEcceEEEEECCEEE-EEe
Confidence 46999999999865 5899999999999999999999999999999999999875555669999999999999998 999
Q ss_pred cceecCCCCCHHHHHHHHHHHHHHHhcCCCH
Q 029006 148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTD 178 (200)
Q Consensus 148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~ 178 (200)
+.+++.+|||.+++++++++|+++|++.+++
T Consensus 81 d~a~~~edID~~~a~~a~~~Ae~~l~~~~~~ 111 (136)
T PRK13443 81 EKAIPVEELTGAVLDEFIAEARELASVALPE 111 (136)
T ss_pred CeeEEhhhCCHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999975543
No 15
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.97 E-value=9.4e-32 Score=204.88 Aligned_cols=100 Identities=29% Similarity=0.460 Sum_probs=95.0
Q ss_pred eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEccc
Q 029006 70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVE 149 (200)
Q Consensus 70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~~ 149 (200)
|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |++++
T Consensus 1 m~l~IvtP~~~~-~~~~v~~V~~pt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~-Il~~~ 78 (101)
T PRK13451 1 MKVKIVTPYGIV-YDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVI-IITEE 78 (101)
T ss_pred CEEEEEcCCceE-EeceeEEEEEEcCccCeEEcCCCcceEEEecceEEEEEECCcEEEEEEeccEEEEECCEEE-EEEeE
Confidence 689999999975 5899999999999999999999999999999999999987778889999999999999998 99999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 029006 150 AVPIDQIDPSLVQKGLAEFNQK 171 (200)
Q Consensus 150 a~~~deID~~~a~~~l~~Ae~~ 171 (200)
+++.++||.+++++++++|++.
T Consensus 79 a~~~e~ID~~~a~~a~~~Ae~~ 100 (101)
T PRK13451 79 AGREEEISPHRYLGARERVERV 100 (101)
T ss_pred eEehhhCCHHHHHHHHHHhhcc
Confidence 9999999999999999999864
No 16
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.97 E-value=2.1e-31 Score=206.25 Aligned_cols=105 Identities=27% Similarity=0.507 Sum_probs=98.3
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-C--CeEEEEEecccEEEEECCeEEE
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-G--NDTKKYFVSSGFAFIHANSVAD 144 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~--~~~~~~~VsgGf~~V~~n~v~~ 144 (200)
++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. + ++++.|+|+|||++|.+|+|+
T Consensus 3 ~~~~l~IvTP~~~~-~~~~v~~V~lp~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~~v~gGf~~v~~n~v~- 80 (112)
T PRK01474 3 ETILVKIITPLSIA-FEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNYIN- 80 (112)
T ss_pred ceEEEEEEcCCceE-EeeeEEEEEEEcCccCceecCCCcceEEEecceEEEEEECCCCCcEEEEEEcceEEEEECCEEE-
Confidence 47999999999975 589999999999999999999999999999999999985 3 467889999999999999998
Q ss_pred EEccceecCCCCCHHHHHHHHHHHHHHHhc
Q 029006 145 IIAVEAVPIDQIDPSLVQKGLAEFNQKLSS 174 (200)
Q Consensus 145 Ila~~a~~~deID~~~a~~~l~~Ae~~L~~ 174 (200)
|+++.+++.++||.+++++++++|+++|+.
T Consensus 81 Ila~~a~~~~~ID~~~a~~~~~~A~~~l~~ 110 (112)
T PRK01474 81 IATETAINVTNLSEAEIATKLLDLQKTLSD 110 (112)
T ss_pred EEeCeeEEhhhCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999874
No 17
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=99.95 E-value=1.7e-27 Score=189.40 Aligned_cols=101 Identities=18% Similarity=0.322 Sum_probs=91.1
Q ss_pred eeEEEEEcCCceeeccCc-eeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006 69 KLTVNFVLPYASELSAKE-VDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII 146 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~-V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il 146 (200)
+|+|+|+||++.+| +++ |++|++||.+|+|||||||+|+|+.|.||+++|+. ++++++|+|+|||++|.+|+|+ |+
T Consensus 2 ~~~l~IvTP~~~~~-~g~~v~~V~lpt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~ev~~n~V~-Il 79 (131)
T PRK06228 2 SMNLKILLPFEVFA-EKKGVTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEAEGEVYVAVDEGILVKTGPDVL-VS 79 (131)
T ss_pred ceEEEEEcCCeeEE-CCCcEEEEEEEcCccCeEECCCCcceEeeecceEEEEEECCCcEEEEEEcceEEEEECCEEE-EE
Confidence 58999999999765 788 99999999999999999999999999999999987 7788899999999999999998 99
Q ss_pred ccceecCCCCCHHHHHHHHHHHHHHHh
Q 029006 147 AVEAVPIDQIDPSLVQKGLAEFNQKLS 173 (200)
Q Consensus 147 a~~a~~~deID~~~a~~~l~~Ae~~L~ 173 (200)
++.|++.+||| +..+.++++.+.+.
T Consensus 80 ad~ae~~edid--~~~~~l~~~~~~~~ 104 (131)
T PRK06228 80 VRNAIGGTDLG--ELREAVEQEFLTLD 104 (131)
T ss_pred EceeEchhhHH--HHHHHHHHHHHhhh
Confidence 99999999875 67777777755444
No 18
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.95 E-value=1.2e-26 Score=182.32 Aligned_cols=99 Identities=20% Similarity=0.348 Sum_probs=87.8
Q ss_pred EEEEEcCCceeecc-CceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEcc
Q 029006 71 TVNFVLPYASELSA-KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIAV 148 (200)
Q Consensus 71 ~L~IvTP~~~~~~~-~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila~ 148 (200)
+|+|+||++.+ |+ ++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++++|+|||+++.+|+|+ |+++
T Consensus 1 ~l~IvtP~~~~-~~~~~v~~v~~~~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~~v~~n~v~-Il~~ 78 (122)
T TIGR03166 1 RLKILTPFRVF-LDKLPVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGADVE-VSVR 78 (122)
T ss_pred CeEEECCCeeE-EecCcEEEEEEEcCcCCeEEcCCCcCeEeEeccEEEEEEECCCcEEEEEEeeeEEEEECCEEE-EEec
Confidence 58999999965 57 9999999999999999999999999999999999986 7788889999999999999998 9999
Q ss_pred ceecCCCCCHHHHHHHHHHHHHHHh
Q 029006 149 EAVPIDQIDPSLVQKGLAEFNQKLS 173 (200)
Q Consensus 149 ~a~~~deID~~~a~~~l~~Ae~~L~ 173 (200)
.|++.++|| +++++++.+..++.
T Consensus 79 ~ae~~edId--~l~~~i~~~~~~~~ 101 (122)
T TIGR03166 79 NAVGGTELE--ELEEAVRQEFLTLD 101 (122)
T ss_pred eeEcccCHH--HHHHHHHHHHHHHH
Confidence 999999995 55556666555443
No 19
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.94 E-value=3e-26 Score=183.26 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=86.5
Q ss_pred eEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEE-CCeEEEEE
Q 029006 70 LTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIH-ANSVADII 146 (200)
Q Consensus 70 l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~-~n~v~~Il 146 (200)
|+|+|+||++.+| ++ +|.+|.+||.+|+|||||||+|+|+.|.||+++|+. ++++++|+|+|||++|. +|+|+ |+
T Consensus 1 ~~L~IVTP~~~~~-~g~~v~~V~~~t~~G~~GILp~HaPlit~L~~G~l~i~~~~g~~~~~aVsGGfleV~~~n~V~-Il 78 (136)
T PRK13447 1 LRLTIATPLAVVV-DELDIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGARVE-IA 78 (136)
T ss_pred CEEEEEcCCeeEE-CCCcEEEEEecCCcCceEEcCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEecCCEEE-EE
Confidence 6899999999765 66 599999999999999999999999999999999987 77888999999999999 89998 99
Q ss_pred ccceecCCCCCHHHHHHHHHHHHHHH
Q 029006 147 AVEAVPIDQIDPSLVQKGLAEFNQKL 172 (200)
Q Consensus 147 a~~a~~~deID~~~a~~~l~~Ae~~L 172 (200)
++.|++.+|||..+ +.++.+..++
T Consensus 79 ad~ae~~edID~~~--a~i~~~~~~~ 102 (136)
T PRK13447 79 CREAVLGEDLARLE--AVVRAVRAAQ 102 (136)
T ss_pred eceeEchhhcCHHH--HHHHHHHHhh
Confidence 99999999999544 4444444433
No 20
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.94 E-value=2.2e-26 Score=171.65 Aligned_cols=85 Identities=28% Similarity=0.481 Sum_probs=79.6
Q ss_pred CCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEE
Q 029006 67 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADI 145 (200)
Q Consensus 67 ~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~I 145 (200)
.++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||+++.+|+++ |
T Consensus 3 ~~~~~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n~v~-I 80 (89)
T PRK13442 3 GATLHVNIVAADRPV-WSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLT-V 80 (89)
T ss_pred CCEEEEEEEcCCccE-EeceeEEEEEECCcCCcEecCCCcCeEEEEcceEEEEEECCCcEEEEEEccEEEEEECCEEE-E
Confidence 467999999999975 589999999999999999999999999999999999987 7788899999999999999998 9
Q ss_pred EccceecC
Q 029006 146 IAVEAVPI 153 (200)
Q Consensus 146 la~~a~~~ 153 (200)
+++.|++.
T Consensus 81 l~~~ae~~ 88 (89)
T PRK13442 81 LAERAELV 88 (89)
T ss_pred EEeEEEEC
Confidence 99999874
No 21
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.93 E-value=7e-26 Score=168.69 Aligned_cols=84 Identities=35% Similarity=0.592 Sum_probs=77.0
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CC-eEEEEEecccEEEEECCeEEEE
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GN-DTKKYFVSSGFAFIHANSVADI 145 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~-~~~~~~VsgGf~~V~~n~v~~I 145 (200)
++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++ ++++|+|+|||++|.+|+|+ |
T Consensus 2 ~~l~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~v~gGf~~v~~n~v~-I 79 (88)
T PRK13449 2 AKLHFELVTPERLL-RSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHVQGGFAEVNEKGLT-I 79 (88)
T ss_pred CeeEEEEEcCCceE-EccEEEEEEEeCCccCeEEcCCCcceEEEeeceEEEEEECCCCeEEEEEEcceEEEEECCEEE-E
Confidence 57999999999865 589999999999999999999999999999999999986 54 47789999999999999998 9
Q ss_pred EccceecC
Q 029006 146 IAVEAVPI 153 (200)
Q Consensus 146 la~~a~~~ 153 (200)
+++.|+..
T Consensus 80 l~~~ae~~ 87 (88)
T PRK13449 80 LAEHAVEA 87 (88)
T ss_pred EcceeEEc
Confidence 99998753
No 22
>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....
Probab=99.92 E-value=5.6e-25 Score=160.03 Aligned_cols=79 Identities=41% Similarity=0.703 Sum_probs=73.8
Q ss_pred eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEcc
Q 029006 70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIAV 148 (200)
Q Consensus 70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila~ 148 (200)
|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|.||+++|+. ++++++|+|+|||+++.+|+|. |+++
T Consensus 1 l~l~IvtP~~~~~-~~~v~~v~~~t~~G~~gIl~~H~p~i~~l~~G~~~i~~~~~~~~~~~v~~G~~~v~~n~v~-Il~~ 78 (80)
T PF02823_consen 1 LKLKIVTPDGIFF-EGEVESVVLPTTDGEFGILPNHAPFITALKPGELRIKDADGEEKKFAVSGGFLEVKDNEVT-ILAD 78 (80)
T ss_dssp EEEEEEESSSEEE-EEEESEEEEEBSSSEEEEETTS-SEEEEEESEEEEEEESSSEEEEEEESSEEEEEETSEEE-EEES
T ss_pred CEEEEEcCCceEE-eeEEEEEEEECCCcChhhccCCchhheeccceEEEEEEcCCCEEEEEEcCEEEEEECCEEE-EEEc
Confidence 7899999999764 79999999999999999999999999999999999996 8899999999999999999998 9998
Q ss_pred ce
Q 029006 149 EA 150 (200)
Q Consensus 149 ~a 150 (200)
+|
T Consensus 79 ~A 80 (80)
T PF02823_consen 79 EA 80 (80)
T ss_dssp SE
T ss_pred cC
Confidence 75
No 23
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=97.87 E-value=3.1e-05 Score=51.53 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 154 DQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 154 deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
+|||.++|++.+++|++.|++.+++.++.++++.|.++.+.+.+..
T Consensus 1 ~dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~aRl~~~~ 46 (48)
T PF00401_consen 1 EDIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAIARLQAAK 46 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999998888899999999999999998864
No 24
>PRK10579 hypothetical protein; Provisional
Probab=77.79 E-value=18 Score=27.52 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=47.1
Q ss_pred eeccCceeEEEEecCccc---eeccC-------CCcceeeeecCeEEEEEeCC-eEEEEEecccEEEEECCe
Q 029006 81 ELSAKEVDMVIVPASTGQ---MGVLP-------GHVPTIAELKPGVLSVHDGN-DTKKYFVSSGFAFIHANS 141 (200)
Q Consensus 81 ~~~~~~V~~V~lpt~~Ge---iGVLp-------gH~P~It~L~pGvl~I~~~~-~~~~~~VsgGf~~V~~n~ 141 (200)
+|++++|.+..+-..+|. +||+. =|.|-+..+..|.++|+..| ...+.+-.|--..|-.|+
T Consensus 6 vYFdGkv~S~~~~~~dG~~kTlGVm~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~Vpans 77 (94)
T PRK10579 6 EYFSGKVKSIGFDSSSTGRASVGVMAEGEYTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHS 77 (94)
T ss_pred eEECCeEEEEEEEcCCCCeeEEEEEeeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCC
Confidence 467999999999999976 77753 48899999999999999843 333445577777787775
No 25
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=45.72 E-value=55 Score=35.09 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=53.5
Q ss_pred CCCcccC-CCCCCCCCCCCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe------CC
Q 029006 51 TPSVYMT-PRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD------GN 123 (200)
Q Consensus 51 ~~~~~~~-~~~~~~~~~~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~------~~ 123 (200)
||..|+. ||=.+-.+..=.|+++-..|++.+++.+.-. - -.+.-=-|-.|-||.-++--|..|.++++. ||
T Consensus 445 t~es~l~LP~Wnt~~~gSiSf~FRTtepnGlil~~~g~~-~-~~~d~~A~ELldghlyl~ldlGSG~iklras~rkv~DG 522 (1591)
T KOG3514|consen 445 TPESYLTLPRWNTKKSGSISFDFRTTEPNGLILFHGGPQ-A-NATDYFAIELLDGHLYLLLDLGSGVIKLRASSRKVNDG 522 (1591)
T ss_pred cccceeeccccccCCcceeEEEEeecCCCceEEEccCcc-c-ccccEEEEEEeCCeEEEEEecCCceEEeeeecccccCC
Confidence 5666665 6666666666678888888999988754310 0 001112356788999999999999999973 68
Q ss_pred eEEEEE
Q 029006 124 DTKKYF 129 (200)
Q Consensus 124 ~~~~~~ 129 (200)
+|+.+-
T Consensus 523 eWhhv~ 528 (1591)
T KOG3514|consen 523 EWHHVD 528 (1591)
T ss_pred ceEEEE
Confidence 887654
No 26
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=42.20 E-value=1.5e+02 Score=22.48 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=42.6
Q ss_pred eeccCceeEEEEecCccc---eecc-CC------CcceeeeecCeEEEEEeCC-eEEEEEecccEEEEECCeE
Q 029006 81 ELSAKEVDMVIVPASTGQ---MGVL-PG------HVPTIAELKPGVLSVHDGN-DTKKYFVSSGFAFIHANSV 142 (200)
Q Consensus 81 ~~~~~~V~~V~lpt~~Ge---iGVL-pg------H~P~It~L~pGvl~I~~~~-~~~~~~VsgGf~~V~~n~v 142 (200)
+|++++|.+..+-..+|. +||+ || +.|-+..+..|.+.|+..| ...+-+-.|-...|-.|.-
T Consensus 6 ~YFdGkV~S~~~~~~dG~~~TlGVm~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~Vpanss 78 (94)
T PF06865_consen 6 VYFDGKVKSITFEFADGSKKTLGVMLPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSS 78 (94)
T ss_dssp EECCCTEEEEEEEETTSEEEEEEEE-SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEE
T ss_pred EEeCCeEEEEEEEcCCCCcceEEEEeeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCe
Confidence 467999999999999965 5654 44 6788888889999998733 3233444777778877753
No 27
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.68 E-value=43 Score=23.24 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHH
Q 029006 161 VQKGLAEFNQKLSSATTDLEKAEAQI 186 (200)
Q Consensus 161 a~~~l~~Ae~~L~~~~~~~eka~aqi 186 (200)
++++++..|++|+.++.+...++.++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888876555555554443
No 28
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=28.36 E-value=27 Score=27.40 Aligned_cols=8 Identities=75% Similarity=1.070 Sum_probs=0.0
Q ss_pred ChhHHHHH
Q 029006 1 MFRQASRL 8 (200)
Q Consensus 1 ~~r~~~~~ 8 (200)
|||+++|+
T Consensus 1 ~~~~~~~~ 8 (116)
T PF02046_consen 1 MFRQAARA 8 (116)
T ss_dssp --------
T ss_pred Cccccccc
Confidence 89977664
No 29
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=26.04 E-value=1.5e+02 Score=19.18 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=19.0
Q ss_pred CcceeeeecCe-EEEEEe-CCeEEEEEec
Q 029006 105 HVPTIAELKPG-VLSVHD-GNDTKKYFVS 131 (200)
Q Consensus 105 H~P~It~L~pG-vl~I~~-~~~~~~~~Vs 131 (200)
+.++++.|.+| +++|.. .++|.++-..
T Consensus 14 ~~~vv~~l~~g~~v~v~~~~~~W~~V~~~ 42 (55)
T PF06347_consen 14 NSPVVARLEPGVPVRVIECRGGWCKVRAD 42 (55)
T ss_pred CCCEEEEECCCCEEEEEEccCCeEEEEEC
Confidence 67889999999 555655 6677666633
No 30
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.61 E-value=1.7e+02 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 155 QIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 155 eID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
+.|+..+++.+++++.++.+.++..++...++.++.++....+|
T Consensus 65 e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 65 ESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888877788777777777776666554443
No 31
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=21.86 E-value=42 Score=27.94 Aligned_cols=15 Identities=40% Similarity=0.829 Sum_probs=13.2
Q ss_pred CCCcceeeeecCeEE
Q 029006 103 PGHVPTIAELKPGVL 117 (200)
Q Consensus 103 pgH~P~It~L~pGvl 117 (200)
.||.|+++.|+|++.
T Consensus 43 ~GhtPllavlrPNl~ 57 (170)
T COG1795 43 QGHTPLLAVLRPNLA 57 (170)
T ss_pred cCCCceEEEecCCCC
Confidence 499999999999964
No 32
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=21.46 E-value=4.3e+02 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=9.8
Q ss_pred CCeEEEEEecccEEEEECC
Q 029006 122 GNDTKKYFVSSGFAFIHAN 140 (200)
Q Consensus 122 ~~~~~~~~VsgGf~~V~~n 140 (200)
+|....+.+.-|=..-.++
T Consensus 69 ~G~V~~i~v~~G~~VkkGq 87 (385)
T PRK09859 69 GGIIIKRNFIEGDKVNQGD 87 (385)
T ss_pred cEEEEEEEcCCcCEecCCC
Confidence 5555555555555444444
No 33
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=20.72 E-value=2.6e+02 Score=28.09 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=39.6
Q ss_pred EEEEeCCeEEEEEecccEEEEECCeEEEEEccceecCCCCCHHHHHHHHHHH
Q 029006 117 LSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEF 168 (200)
Q Consensus 117 l~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~~a~~~deID~~~a~~~l~~A 168 (200)
..|..|...+.|+..||-+...++.|. +.+++-...+-|.-++.++.+..
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVv--CIDEFDKMre~DRVAIHEAMEQQ 455 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVV--CIDEFDKMREDDRVAIHEAMEQQ 455 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEE--EeehhhccCchhhhHHHHHHHhh
Confidence 345567788899999999999999886 66888888888877777666653
Done!