Query 029006
Match_columns 200
No_of_seqs 178 out of 1192
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xok_H ATP synthase; hydrolase 100.0 6.3E-40 2.2E-44 267.2 7.6 157 1-199 1-160 (160)
2 2w6j_H F1-ATPase delta subunit 100.0 8.3E-40 2.8E-44 268.3 -0.4 132 66-199 34-168 (168)
3 1aqt_A ATP synthase; hydrolase 100.0 4.2E-36 1.4E-40 238.9 17.5 129 68-198 2-131 (138)
4 2e5y_A ATP synthase epsilon ch 100.0 2.7E-36 9.1E-41 238.7 15.1 130 68-199 2-131 (133)
5 2rq6_A ATP synthase epsilon ch 100.0 9.6E-36 3.3E-40 236.9 14.0 128 70-199 3-133 (138)
6 3oee_H ATP synthase subunit de 100.0 9.3E-38 3.2E-42 248.6 1.8 131 66-199 6-138 (138)
7 2ck3_H ATP synthase subunit de 100.0 6.5E-38 2.2E-42 251.7 -0.4 136 62-199 8-146 (146)
8 2qe7_H ATP synthase subunit ep 100.0 3.4E-36 1.2E-40 238.6 0.8 129 69-199 3-132 (135)
9 3hqx_A UPF0345 protein aciad03 62.4 42 0.0014 25.2 7.9 74 72-147 12-99 (111)
10 3eo6_A Protein of unknown func 60.0 44 0.0015 24.9 7.6 69 71-141 10-90 (106)
11 1k1f_A Breakpoint cluster regi 59.3 4.5 0.00016 28.0 1.9 19 32-50 4-22 (72)
12 3osx_A 60 kDa chaperonin; alph 54.3 44 0.0015 27.5 7.4 50 136-192 146-195 (201)
13 3m6c_A 60 kDa chaperonin 1; ch 51.1 54 0.0018 26.9 7.4 50 136-192 139-188 (194)
14 2oyz_A UPF0345 protein VPA0057 24.5 2E+02 0.0069 20.7 7.1 59 81-141 7-77 (94)
No 1
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-40 Score=267.19 Aligned_cols=157 Identities=36% Similarity=0.577 Sum_probs=113.1
Q ss_pred ChhHHHHHHHHhhhh-hhhhhccccCCCCCCCchhHHHhhhhcCCCCCCCCCCCcccCCCCCCCCCCCCeeEEEEEcCCc
Q 029006 1 MFRQASRLLARASAV-TRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYA 79 (200)
Q Consensus 1 ~~r~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~IvTP~~ 79 (200)
|||....+...++.. ..+|+|++++.+ +++|+|+|+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~---------------------------------------~~~l~l~IVtPe~ 41 (160)
T 2xok_H 1 MLRSIIGKSASRSLNFVAKRSYAEAAAA---------------------------------------SSGLKLQFALPHE 41 (160)
T ss_dssp ------------------------------------------------------------------------CCCBCSSC
T ss_pred CchhhccchhHHHhhhhhhhhhhhhccC---------------------------------------CCeEEEEEEcCCe
Confidence 888887776655554 357999886643 5679999999999
Q ss_pred eeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECC-eEEEEEccceecCCCCC
Q 029006 80 SELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHAN-SVADIIAVEAVPIDQID 157 (200)
Q Consensus 80 ~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n-~v~~Ila~~a~~~deID 157 (200)
.+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++++|+|+|||++|.+| +|+ |+++.|++.+|||
T Consensus 42 ~~~-~~~~v~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~g~~~~~aV~gGf~eV~~~n~Vt-Ila~~A~~~~dID 119 (160)
T 2xok_H 42 TLY-SGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLC-VTAIEAFPLESFS 119 (160)
T ss_dssp BCC-C--CCSEEEEECSSSEEEEESSCCCCEEEECSSCEEECSSSCCEEECCCCEEEEECTTSCEE-EEESCC-CCTTTC
T ss_pred eEE-cCCcEEEEEEECCccCeEecCCCccceeEecceEEEEEECCEEEEEEEcCeEEEEeCCCeEE-EEeeeeEehhhCC
Confidence 764 66 8999999999999999999999999999999999887788999999999999987 898 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 158 PSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 158 ~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
.+++++++++|+++|++. ++.++++|++.|++++++++||.
T Consensus 120 ~~~A~~a~~~Ae~~l~~~-~~~d~~~A~~~L~~a~~l~~al~ 160 (160)
T 2xok_H 120 QENIKNLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQSVLK 160 (160)
T ss_dssp -CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999988 88999999999999999999974
No 2
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Probab=100.00 E-value=8.3e-40 Score=268.31 Aligned_cols=132 Identities=36% Similarity=0.567 Sum_probs=80.4
Q ss_pred CCCeeEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEEC-CeE
Q 029006 66 IPSKLTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHA-NSV 142 (200)
Q Consensus 66 ~~~~l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~-n~v 142 (200)
.+++|+|+|+||++.+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+++.|+|+|||++|++ |+|
T Consensus 34 ~~~~~~l~IVtPe~~~~-~~~~V~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~~g~~~~~~V~gGf~eV~~~n~V 112 (168)
T 2w6j_H 34 GPGQMSFTFASPTQVFF-NSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSV 112 (168)
T ss_dssp -----CCCEECSSCEEE-C-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------
T ss_pred CCCeEEEEEEcCCeeEE-cCCcEEEEEEeCCccCccccCCCcceEeEecceEEEEEECCCcEEEEEEeCCeEEEecCCeE
Confidence 36779999999999765 65 899999999999999999999999999999999986 778899999999999987 489
Q ss_pred EEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 143 ADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 143 ~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
+ |+++.+++.+|||.+++++++++|+++|++.+++.+++++++.|++++++++||.
T Consensus 113 t-Ila~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~ 168 (168)
T 2w6j_H 113 Q-LLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE 168 (168)
T ss_dssp C-EEBSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred E-EEecccCccccCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 8 9999999999999999999999999999998899999999999999999999974
No 3
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=100.00 E-value=4.2e-36 Score=238.92 Aligned_cols=129 Identities=20% Similarity=0.362 Sum_probs=122.5
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII 146 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il 146 (200)
++|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+++.|+|+|||++|.+|.|+ |+
T Consensus 2 ~tl~l~ivtP~~~~~-~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~g~~~~~~v~gGf~ev~~~~vt-Il 79 (138)
T 1aqt_A 2 STYHLDVVSAEQQMF-SGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVT-VL 79 (138)
T ss_dssp CCEEEEEEESSCEEE-EEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEE-EE
T ss_pred CEEEEEEEcCCceEE-eeeEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEECCEEE-EE
Confidence 459999999999765 79999999999999999999999999999999999997 7888999999999999999998 99
Q ss_pred ccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006 147 AVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 198 (200)
Q Consensus 147 a~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al 198 (200)
++.|++.+|||.+++++++++|+++|++.+++.++++|++.|.++.+++++.
T Consensus 80 a~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~arl~~~ 131 (138)
T 1aqt_A 80 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVI 131 (138)
T ss_dssp ESSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888999999999999999988774
No 4
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=100.00 E-value=2.7e-36 Score=238.70 Aligned_cols=130 Identities=26% Similarity=0.411 Sum_probs=122.9
Q ss_pred CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEc
Q 029006 68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIA 147 (200)
Q Consensus 68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila 147 (200)
.+|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++++|+|+|||++|.+|.|+ |++
T Consensus 2 ~~~~l~ivtP~~~~~-~~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vt-Ila 79 (133)
T 2e5y_A 2 KTIHVSVVTPDGPVY-EDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVRPDKVT-ILA 79 (133)
T ss_dssp CCEEEEEEETTEEEE-EEEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEEE-EEE
T ss_pred CceEEEEEcCCceEE-eceEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCeEEEEECCEEE-EEE
Confidence 359999999999765 799999999999999999999999999999999999988899999999999999999998 999
Q ss_pred cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
+.|++.+|||.+++++++++|+++|++.+++.++++|++.|.++.+.+++..
T Consensus 80 ~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~~rl~~~~ 131 (133)
T 2e5y_A 80 QAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVAE 131 (133)
T ss_dssp SSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988888899999999999999888753
No 5
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=100.00 E-value=9.6e-36 Score=236.94 Aligned_cols=128 Identities=27% Similarity=0.360 Sum_probs=121.0
Q ss_pred eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEccc
Q 029006 70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVE 149 (200)
Q Consensus 70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~~ 149 (200)
|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+.+|+++.|+|+|||++|.+|.|+ |+++.
T Consensus 3 l~l~ivtP~~~~~-~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vt-Ila~~ 80 (138)
T 2rq6_A 3 MTVRVIAPDKTVW-DAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVT-ILVNG 80 (138)
T ss_dssp EEEEEECSSSEEE-EEEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEESSSCEEEEEECSEEEEECSSCEE-EEESC
T ss_pred eEEEEEcCCceEE-eeeEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEECCeEEEEEEcCcEEEEECCEEE-EEEee
Confidence 9999999999765 799999999999999999999999999999999999988889999999999999999998 99999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHhHHHHHHHHhhhc
Q 029006 150 AVPIDQIDPSLVQKGLAEFNQKLSSAT---TDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 150 a~~~deID~~~a~~~l~~Ae~~L~~~~---~~~eka~aqi~le~~~al~~al~ 199 (200)
|++.+|||.+++++++++|+++|++.+ ++.++++|++.|+++.+++++..
T Consensus 81 A~~~~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~arl~~~~ 133 (138)
T 2rq6_A 81 AERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAG 133 (138)
T ss_dssp EECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEhhhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998765 77889999999999999888753
No 6
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*
Probab=100.00 E-value=9.3e-38 Score=248.55 Aligned_cols=131 Identities=38% Similarity=0.644 Sum_probs=114.6
Q ss_pred CCCeeEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECC-eEE
Q 029006 66 IPSKLTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHAN-SVA 143 (200)
Q Consensus 66 ~~~~l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n-~v~ 143 (200)
.+++|+|+|+||++.+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++++|+|+|||++|.+| .|+
T Consensus 6 ~~~~l~l~IvtP~~~~~-~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~g~~~~~~V~gGf~eV~~~~~v~ 84 (138)
T 3oee_H 6 ASSGLKLQFALPHETLY-SGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLC 84 (138)
T ss_dssp -----CEEEECSSCBCC-C--CCSCEECCCSSSCCEECTTCCCCEEEECSEEEEECSSSCCEEEEECCEEEEECTTSCEE
T ss_pred CCCcEEEEEEcCCeeEE-cCCcEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCeEEEEeCCCEEE
Confidence 46789999999999865 56 9999999999999999999999999999999999877888999999999999987 788
Q ss_pred EEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 144 DIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 144 ~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
|++++|++.+|||.+++++++++|+++|++ .++..+++|+++|+++++|.+||.
T Consensus 85 -Ila~~A~~~~eiD~~~A~~a~e~Ae~~l~~-~~~~~~a~A~~~l~~~~~l~~al~ 138 (138)
T 3oee_H 85 -VTAIEAFPLESFSQENIKNLLAEAKKNVSS-SDAREAAEAAIQVEVLENLQSVLK 138 (138)
T ss_dssp -EECSCC-CCSSCC-CCSSSSTTHHHHHTSC-SSSSGGGTTTHHHHHHHTTSCC--
T ss_pred -EEeccccchhhCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999986 566789999999999999999874
No 7
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Probab=100.00 E-value=6.5e-38 Score=251.74 Aligned_cols=136 Identities=36% Similarity=0.578 Sum_probs=80.4
Q ss_pred CCCCCCCeeEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEEC
Q 029006 62 TPTSIPSKLTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHA 139 (200)
Q Consensus 62 ~~~~~~~~l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~ 139 (200)
.|++.+++|+|+|+||++.+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+++.|+|+|||++|.+
T Consensus 8 ~~~~~~~~l~l~IvtP~~~~~-~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~~g~~~~~~v~gGf~eV~~ 86 (146)
T 2ck3_H 8 APAAGPGQMSFTFASPTQVFF-NSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNA 86 (146)
T ss_dssp ---------CCCEECSSCEEE-C-----CCBCCC-----------------CCSBCCBC----------CBCSBC-----
T ss_pred CCCCcCCeEEEEEEcCCeeEE-cCCcEEEEEEECCccCeeccCCCcceEeEecceEEEEEECCCcEEEEEEeCCEEEEeC
Confidence 344557889999999999765 65 899999999999999999999999999999999986 778899999999999987
Q ss_pred C-eEEEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 140 N-SVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 140 n-~v~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~ 199 (200)
| +|+ |+++.+++.+|||.+++++++++|+++|++.+++.++++|++.|++++++++||+
T Consensus 87 ~~~Vt-Ila~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~ 146 (146)
T 2ck3_H 87 DSSVQ-LLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE 146 (146)
T ss_dssp ----C-EEBSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred CCEEE-EEeceeEehhhCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 7 898 9999999999999999999999999999998899999999999999999999974
No 8
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=100.00 E-value=3.4e-36 Score=238.63 Aligned_cols=129 Identities=24% Similarity=0.348 Sum_probs=121.2
Q ss_pred eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006 69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV 148 (200)
Q Consensus 69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~ 148 (200)
+|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.++++++|+|+|||++|.+|.|+ |+++
T Consensus 3 ~~~l~ivtP~~~~-~~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vt-Ila~ 80 (135)
T 2qe7_H 3 TVQVDIVTPERKV-FQGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPDKVN-ILAD 80 (135)
T ss_dssp CCEEEEBCSSCBC-CCSCCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCTTSCCBCCBCCSCCEEECSSEEE-ECCS
T ss_pred ceEEEEEcCCceE-EeceEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCcEEEEECCEEE-EEEe
Confidence 5999999999975 5799999999999999999999999999999999999987778899999999999999998 9999
Q ss_pred ceecCCCCCHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhHHHHHHHHhhhc
Q 029006 149 EAVPIDQIDPSLVQKGLAEFNQKLSSA-TTDLEKAEAQIGVDVHSALNSALT 199 (200)
Q Consensus 149 ~a~~~deID~~~a~~~l~~Ae~~L~~~-~~~~eka~aqi~le~~~al~~al~ 199 (200)
.|++.+|||.+++++++++|+++|++. +++.++++|++.|.++.+.+++..
T Consensus 81 ~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~~a~~al~rA~~rl~~~~ 132 (135)
T 2qe7_H 81 TAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEVRLQVAN 132 (135)
T ss_dssp SCBCTTTSCHHHHHHHHHTTTTTTTTCCSSSSSTTTSTTTHHHHTHHHHTTS
T ss_pred eeEEhhhCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987 788899999999999999887753
No 9
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=62.37 E-value=42 Score=25.17 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=53.8
Q ss_pred EEEEcCCceeeccCceeEEEEecCccc---eec-cCCC--------cceeeeecCeEEEEEe-CC-eEEEEEecccEEEE
Q 029006 72 VNFVLPYASELSAKEVDMVIVPASTGQ---MGV-LPGH--------VPTIAELKPGVLSVHD-GN-DTKKYFVSSGFAFI 137 (200)
Q Consensus 72 L~IvTP~~~~~~~~~V~~V~lpt~~Ge---iGV-LpgH--------~P~It~L~pGvl~I~~-~~-~~~~~~VsgGf~~V 137 (200)
+.|+.-.. +|++|+|.+..+-..||. +|| |||- .|-+..+..|.++|+. +. +|+. +-.|--..|
T Consensus 12 Vtv~kkaN-vYFdGkV~S~~~~~~dG~~kTlGVm~PGe~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~-~~aGesF~V 89 (111)
T 3hqx_A 12 VTVIKKSN-VYFGGLCISHTVQFEDGTKKTLGVILPTEQPLTFETHVPERMEIISGECRVKIADSTESEL-FRAGQSFYV 89 (111)
T ss_dssp CEECSSCE-EETTTTEEEEEEECTTSCEEEEEEECCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCEE-EETTCEEEE
T ss_pred EEEEEEeE-EEeCCeEEEEEEEeCCCCEEEEEEEeccccceEEcCCCcEEEEEEEeEEEEEcCCcccCEE-eCCCCEEEE
Confidence 44555554 578999999999999984 676 5676 6889999999999998 33 4444 447888888
Q ss_pred ECCeEEEEEc
Q 029006 138 HANSVADIIA 147 (200)
Q Consensus 138 ~~n~v~~Ila 147 (200)
-.|.--+|-+
T Consensus 90 panssF~lkv 99 (111)
T 3hqx_A 90 PGNSLFKIET 99 (111)
T ss_dssp CTTCEEEEEC
T ss_pred CCCCcEEEEE
Confidence 8775333433
No 10
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=59.95 E-value=44 Score=24.85 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=51.5
Q ss_pred EEEEEcCCceeeccCceeEEEEecCccc---eecc-CC------CcceeeeecCeEEEEEeCC--eEEEEEecccEEEEE
Q 029006 71 TVNFVLPYASELSAKEVDMVIVPASTGQ---MGVL-PG------HVPTIAELKPGVLSVHDGN--DTKKYFVSSGFAFIH 138 (200)
Q Consensus 71 ~L~IvTP~~~~~~~~~V~~V~lpt~~Ge---iGVL-pg------H~P~It~L~pGvl~I~~~~--~~~~~~VsgGf~~V~ 138 (200)
++.|+.-.. +|++++|.+..+-..+|. +||| || +.|-+..+..|.++|+..| +|+.| -.|--.+|-
T Consensus 10 ~vtv~kkaN-vYFDGkV~S~~~~~~dG~~kTlGVm~PGeY~F~T~~~E~MevvsG~l~V~LpG~~eW~~~-~aGesF~Vp 87 (106)
T 3eo6_A 10 ATALGKSSR-ISLDGRRSERSVILADGSMHSLTLLHPGVYTLSSEVAETIRVLSGMAYYHAEGANDVQEL-HAGDSMVIP 87 (106)
T ss_dssp EEEEESCCE-EETTTTEEEEEEEETTSCEEEEEEECSEEEEECCSSCEEEEEEEEEEEEECTTCSSCEEE-ETTCEEEEC
T ss_pred ceEEEEEee-EEeCCeEEEEEEEeCCCCeEEEEEEeeeEEEecCCCcEEEEEEEeEEEEECCCCccCEEE-CCCCEEEEC
Confidence 456666664 578999999999988874 6765 33 6788899999999999833 45544 477788887
Q ss_pred CCe
Q 029006 139 ANS 141 (200)
Q Consensus 139 ~n~ 141 (200)
.|.
T Consensus 88 ans 90 (106)
T 3eo6_A 88 ANQ 90 (106)
T ss_dssp SSS
T ss_pred CCC
Confidence 774
No 11
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=59.30 E-value=4.5 Score=28.03 Aligned_cols=19 Identities=42% Similarity=0.900 Sum_probs=16.7
Q ss_pred chhHHHhhhhcCCCCCCCC
Q 029006 32 DSTFVESWKKVNPNMEPPK 50 (200)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~ 50 (200)
+-.|+++|++..|.-+||.
T Consensus 4 pvgf~eaW~aqfp~~epp~ 22 (72)
T 1k1f_A 4 PVGFAEAWKAQFPDSEPPR 22 (72)
T ss_dssp HHHHHHHHHHHCTTSCCCC
T ss_pred hhHHHHHHHHhCCCCCCcH
Confidence 3579999999999999887
No 12
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=54.29 E-value=44 Score=27.53 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.6
Q ss_pred EEECCeEEEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHH
Q 029006 136 FIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHS 192 (200)
Q Consensus 136 ~V~~n~v~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~ 192 (200)
.|..+..+ |+.. .=|.+.++++.+..++++....++++|.+.|-+|.+++
T Consensus 146 ~vtkd~Tt-Iv~G------~G~~~~I~~Rv~qIr~qie~t~S~ydkEKLqERLAKLs 195 (201)
T 3osx_A 146 VINKDTTT-IIDG------VGEEGAIAARVTQIRQQIEESTSDYDREKLQERVAKLA 195 (201)
T ss_dssp EECSSCEE-EEEE------CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCceE-EecC------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 34555554 4422 24888999999999999999999999999988887664
No 13
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=51.14 E-value=54 Score=26.85 Aligned_cols=50 Identities=6% Similarity=0.119 Sum_probs=39.1
Q ss_pred EEECCeEEEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHH
Q 029006 136 FIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHS 192 (200)
Q Consensus 136 ~V~~n~v~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~ 192 (200)
.|..+..+ |+.. .=|.+.++++.+..++.+....++++|.+.|-+|.+++
T Consensus 139 ~vtkd~T~-iv~G------~g~~~~I~~Rv~qIr~~ie~t~s~ydkEKLqERlAkLs 188 (194)
T 3m6c_A 139 VVSKDDTV-IVDG------GGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLA 188 (194)
T ss_dssp EECSSCEE-EEEE------CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCceE-EecC------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 35556555 4432 24888999999999999999999999999998887765
No 14
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=24.47 E-value=2e+02 Score=20.72 Aligned_cols=59 Identities=29% Similarity=0.343 Sum_probs=42.1
Q ss_pred eeccCceeEEEEecCccc---eecc-CC------CcceeeeecCeEEEEEeCC--eEEEEEecccEEEEECCe
Q 029006 81 ELSAKEVDMVIVPASTGQ---MGVL-PG------HVPTIAELKPGVLSVHDGN--DTKKYFVSSGFAFIHANS 141 (200)
Q Consensus 81 ~~~~~~V~~V~lpt~~Ge---iGVL-pg------H~P~It~L~pGvl~I~~~~--~~~~~~VsgGf~~V~~n~ 141 (200)
+|++++|.+..+-.. |. +||+ || +.|-+..+..|.++|+..| +|+.| -.|--..|-.|.
T Consensus 7 vYFdGkv~S~~~~~~-G~~~TvGVm~pGeytF~T~~~E~M~vvsG~~~V~lpg~~ew~~~-~aGesF~Vpans 77 (94)
T 2oyz_A 7 SYFAGGVKSLGFNQH-GQDVSVGVMLPGEYTFGTQAPERMTVVKGALVVKRVGEADWTTY-SSGESFDVEGNS 77 (94)
T ss_dssp EEGGGTEEEEEEEET-TEEEEEEEECSEEEEEEESSCEEEEEEESEEEEEETTCSSCEEE-ETTCEEEECSSE
T ss_pred EEeCCeEEEEEEEeC-CCCEEEEEEeceEEEEcCCCeEEEEEEEeEEEEEcCCCCcCEEE-CCCCEEEECCCC
Confidence 467899999998776 64 5664 33 6788888888989888733 34444 467777777775
Done!