Query 029009
Match_columns 200
No_of_seqs 244 out of 1338
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.8 3E-19 1E-23 129.1 5.6 58 143-200 14-75 (80)
2 2dmt_A Homeobox protein BARH-l 99.8 4.1E-19 1.4E-23 127.8 4.0 59 142-200 13-71 (80)
3 2cra_A Homeobox protein HOX-B1 99.7 5.2E-19 1.8E-23 124.1 4.0 58 143-200 4-61 (70)
4 1wh7_A ZF-HD homeobox family p 99.7 1.1E-18 3.9E-23 126.3 5.5 58 142-200 13-75 (80)
5 2kt0_A Nanog, homeobox protein 99.7 7.9E-19 2.7E-23 126.9 4.5 58 143-200 19-76 (84)
6 2djn_A Homeobox protein DLX-5; 99.7 8.7E-19 3E-23 122.9 3.8 58 143-200 4-61 (70)
7 2da3_A Alpha-fetoprotein enhan 99.7 6.5E-19 2.2E-23 126.0 3.0 58 143-200 14-71 (80)
8 2dmu_A Homeobox protein goosec 99.7 8.1E-19 2.8E-23 123.0 3.3 58 143-200 4-61 (70)
9 2da2_A Alpha-fetoprotein enhan 99.7 8.9E-19 3.1E-23 122.6 3.2 59 142-200 3-61 (70)
10 2vi6_A Homeobox protein nanog; 99.7 1.1E-18 3.8E-23 119.6 2.7 56 145-200 2-57 (62)
11 2dms_A Homeobox protein OTX2; 99.7 1.9E-18 6.5E-23 124.1 3.8 58 143-200 4-61 (80)
12 1nk2_P Homeobox protein VND; h 99.7 1.8E-18 6.1E-23 123.5 3.5 58 143-200 6-63 (77)
13 2h1k_A IPF-1, pancreatic and d 99.7 1.1E-18 3.7E-23 120.1 2.2 56 145-200 2-57 (63)
14 2e1o_A Homeobox protein PRH; D 99.7 1.7E-18 5.9E-23 121.4 3.2 57 144-200 5-61 (70)
15 2cue_A Paired box protein PAX6 99.7 1.8E-18 6.1E-23 124.4 3.2 57 144-200 5-61 (80)
16 2da1_A Alpha-fetoprotein enhan 99.7 1.2E-18 4.2E-23 121.9 2.3 58 143-200 4-61 (70)
17 2hdd_A Protein (engrailed home 99.7 1.6E-18 5.5E-23 118.4 2.0 55 146-200 3-57 (61)
18 2dmq_A LIM/homeobox protein LH 99.7 2.7E-18 9.1E-23 123.1 3.2 57 144-200 5-61 (80)
19 1puf_A HOX-1.7, homeobox prote 99.7 3.7E-18 1.3E-22 121.9 3.9 58 143-200 10-67 (77)
20 1akh_A Protein (mating-type pr 99.7 1.5E-18 5.1E-23 118.3 1.6 57 144-200 3-59 (61)
21 1ig7_A Homeotic protein MSX-1; 99.7 2.4E-18 8.2E-23 116.2 2.4 54 147-200 1-54 (58)
22 3rkq_A Homeobox protein NKX-2. 99.7 2.4E-18 8.3E-23 115.6 2.4 55 146-200 2-56 (58)
23 2m0c_A Homeobox protein arista 99.7 4.7E-18 1.6E-22 120.0 3.6 59 142-200 5-63 (75)
24 1bw5_A ISL-1HD, insulin gene e 99.7 3.6E-18 1.2E-22 118.4 2.6 56 145-200 2-57 (66)
25 2l7z_A Homeobox protein HOX-A1 99.7 5.4E-18 1.9E-22 120.0 3.5 57 144-200 5-61 (73)
26 1fjl_A Paired protein; DNA-bin 99.7 3.6E-18 1.2E-22 122.9 2.6 58 143-200 15-72 (81)
27 2da4_A Hypothetical protein DK 99.7 2.3E-18 7.9E-23 123.7 1.2 57 144-200 6-66 (80)
28 2r5y_A Homeotic protein sex co 99.7 4.8E-18 1.6E-22 124.2 2.0 58 143-200 25-82 (88)
29 1ahd_P Antennapedia protein mu 99.7 3.9E-18 1.3E-22 119.2 1.5 55 146-200 2-56 (68)
30 1jgg_A Segmentation protein EV 99.7 5.7E-18 2E-22 115.3 2.2 54 147-200 2-55 (60)
31 1yz8_P Pituitary homeobox 2; D 99.7 2.1E-18 7.3E-23 120.3 0.0 56 145-200 2-57 (68)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 7.1E-18 2.4E-22 117.8 2.7 55 146-200 2-56 (68)
33 1zq3_P PRD-4, homeotic bicoid 99.7 6.9E-18 2.4E-22 117.8 2.5 55 146-200 2-56 (68)
34 3a01_A Homeodomain-containing 99.7 9.6E-18 3.3E-22 124.1 3.4 58 143-200 14-71 (93)
35 1x2n_A Homeobox protein pknox1 99.7 1.3E-17 4.4E-22 117.7 3.5 58 143-200 4-64 (73)
36 1b8i_A Ultrabithorax, protein 99.7 7.2E-18 2.5E-22 121.7 2.0 57 144-200 18-74 (81)
37 2da5_A Zinc fingers and homeob 99.7 2.2E-17 7.4E-22 117.6 4.2 54 147-200 8-61 (75)
38 2k40_A Homeobox expressed in E 99.7 1.1E-17 3.8E-22 116.2 2.4 55 146-200 1-55 (67)
39 1wi3_A DNA-binding protein SAT 99.7 2.5E-17 8.4E-22 116.3 3.8 55 144-198 5-60 (71)
40 1uhs_A HOP, homeodomain only p 99.7 1.5E-17 5.1E-22 117.2 2.4 54 147-200 2-56 (72)
41 1du6_A PBX1, homeobox protein 99.7 2.7E-17 9.2E-22 113.2 3.6 55 146-200 3-60 (64)
42 2hi3_A Homeodomain-only protei 99.7 1.7E-17 5.8E-22 117.3 2.6 55 146-200 2-57 (73)
43 3nar_A ZHX1, zinc fingers and 99.7 1.6E-17 5.5E-22 123.4 2.3 57 144-200 23-79 (96)
44 2ecc_A Homeobox and leucine zi 99.7 2.5E-17 8.6E-22 118.5 2.8 53 148-200 5-57 (76)
45 3a02_A Homeobox protein arista 99.7 1.7E-17 5.8E-22 112.9 1.7 52 149-200 2-53 (60)
46 2dn0_A Zinc fingers and homeob 99.7 2.8E-17 9.7E-22 117.0 2.7 55 146-200 8-62 (76)
47 1b72_A Protein (homeobox prote 99.7 2.1E-17 7.2E-22 122.9 2.0 57 144-200 32-88 (97)
48 2cuf_A FLJ21616 protein; homeo 99.6 3.3E-17 1.1E-21 121.4 2.6 58 143-200 4-76 (95)
49 3a03_A T-cell leukemia homeobo 99.6 2.7E-17 9.2E-22 110.7 1.7 50 151-200 2-51 (56)
50 2ly9_A Zinc fingers and homeob 99.6 4E-17 1.4E-21 115.3 2.6 55 146-200 6-60 (74)
51 1puf_B PRE-B-cell leukemia tra 99.6 5E-17 1.7E-21 114.7 2.4 55 146-200 1-58 (73)
52 2dmn_A Homeobox protein TGIF2L 99.6 7.3E-17 2.5E-21 117.1 3.4 57 144-200 5-64 (83)
53 1mnm_C Protein (MAT alpha-2 tr 99.6 5.3E-17 1.8E-21 118.4 2.4 57 144-200 25-84 (87)
54 1k61_A Mating-type protein alp 99.6 7.1E-17 2.4E-21 109.7 2.3 52 149-200 1-55 (60)
55 2cqx_A LAG1 longevity assuranc 99.6 2.7E-17 9.2E-22 116.7 0.0 55 146-200 8-63 (72)
56 1b72_B Protein (PBX1); homeodo 99.6 7.7E-17 2.6E-21 117.1 2.2 54 147-200 2-58 (87)
57 2e19_A Transcription factor 8; 99.6 1.6E-16 5.5E-21 110.3 3.4 51 150-200 7-57 (64)
58 2xsd_C POU domain, class 3, tr 99.6 7.1E-17 2.4E-21 130.9 1.6 58 143-200 96-153 (164)
59 1le8_B Mating-type protein alp 99.6 1.2E-16 4E-21 115.8 2.3 55 146-200 2-59 (83)
60 1e3o_C Octamer-binding transcr 99.6 1E-16 3.6E-21 129.1 2.2 57 144-200 99-155 (160)
61 1au7_A Protein PIT-1, GHF-1; c 99.6 1.1E-16 3.6E-21 127.5 2.1 58 143-200 84-141 (146)
62 2dmp_A Zinc fingers and homeob 99.6 2.8E-16 9.5E-21 115.5 4.0 52 149-200 16-67 (89)
63 3d1n_I POU domain, class 6, tr 99.6 2.4E-16 8.3E-21 125.7 3.1 57 144-200 91-147 (151)
64 2ecb_A Zinc fingers and homeob 99.6 2.1E-16 7.1E-21 116.8 2.4 50 151-200 16-65 (89)
65 1lfb_A Liver transcription fac 99.6 2.8E-16 9.7E-21 118.0 2.3 58 143-200 6-84 (99)
66 1x2m_A LAG1 longevity assuranc 99.6 2.4E-16 8E-21 110.0 0.7 46 155-200 9-55 (64)
67 3l1p_A POU domain, class 5, tr 99.6 2.9E-16 1E-20 126.0 1.3 57 144-200 94-150 (155)
68 2d5v_A Hepatocyte nuclear fact 99.6 5.8E-16 2E-20 124.7 2.8 58 143-200 94-151 (164)
69 2da6_A Hepatocyte nuclear fact 99.6 8.2E-16 2.8E-20 116.3 3.0 57 144-200 4-81 (102)
70 2l9r_A Homeobox protein NKX-3. 99.6 6.9E-16 2.3E-20 108.9 1.9 50 151-200 9-58 (69)
71 3nau_A Zinc fingers and homeob 99.6 6.1E-16 2.1E-20 108.5 1.2 48 153-200 11-58 (66)
72 3k2a_A Homeobox protein MEIS2; 99.5 7.4E-15 2.5E-19 102.5 1.7 49 152-200 4-55 (67)
73 2da7_A Zinc finger homeobox pr 99.4 6.3E-14 2.2E-18 99.2 1.7 45 155-199 14-58 (71)
74 1ic8_A Hepatocyte nuclear fact 99.4 2.1E-14 7.1E-19 119.6 -1.0 58 143-200 112-190 (194)
75 2h8r_A Hepatocyte nuclear fact 99.4 2E-13 6.7E-18 115.7 3.1 58 143-200 139-217 (221)
76 1mh3_A Maltose binding-A1 home 99.3 4.9E-13 1.7E-17 118.0 1.4 55 146-200 365-419 (421)
77 2lk2_A Homeobox protein TGIF1; 99.3 7E-13 2.4E-17 97.9 1.1 50 151-200 10-62 (89)
78 2nzz_A Penetratin conjugated G 98.2 9.5E-08 3.3E-12 59.5 -0.7 13 188-200 1-13 (37)
79 2ys9_A Homeobox and leucine zi 96.2 0.0018 6.2E-08 45.4 1.8 40 158-197 18-57 (70)
80 2glo_A Brinker CG9653-PA; prot 73.4 1.5 5.1E-05 28.2 1.7 45 150-195 3-47 (59)
81 1hlv_A CENP-B, major centromer 71.2 3.1 0.00011 30.3 3.2 47 148-197 3-49 (131)
82 2elh_A CG11849-PA, LD40883P; s 66.1 5.5 0.00019 27.4 3.5 44 147-195 17-60 (87)
83 1tc3_C Protein (TC3 transposas 62.0 6.8 0.00023 22.6 2.9 41 152-197 5-45 (51)
84 1jko_C HIN recombinase, DNA-in 50.0 6.7 0.00023 23.1 1.4 40 153-197 6-45 (52)
85 1iuf_A Centromere ABP1 protein 48.2 18 0.00062 27.2 3.9 51 147-197 6-60 (144)
86 2lv7_A Calcium-binding protein 47.6 26 0.0009 24.4 4.5 46 150-195 27-79 (100)
87 2jn6_A Protein CGL2762, transp 41.9 15 0.00051 25.3 2.4 43 150-196 3-46 (97)
88 3i5g_B Myosin regulatory light 36.7 67 0.0023 23.6 5.5 42 148-189 5-51 (153)
89 2kvr_A Ubiquitin carboxyl-term 35.0 20 0.00067 27.2 2.2 23 176-198 72-94 (130)
90 1p4w_A RCSB; solution structur 33.5 13 0.00046 26.5 1.0 41 150-196 32-72 (99)
91 2rgt_A Fusion of LIM/homeobox 33.1 0.81 2.8E-05 35.7 -6.2 30 144-173 134-163 (169)
92 2rn7_A IS629 ORFA; helix, all 32.2 34 0.0012 23.8 3.0 46 150-195 4-52 (108)
93 2k27_A Paired box protein PAX- 31.9 79 0.0027 23.4 5.2 41 151-196 24-64 (159)
94 2xi8_A Putative transcription 30.0 14 0.00048 22.7 0.5 23 176-198 17-39 (66)
95 2r1j_L Repressor protein C2; p 28.7 16 0.00055 22.6 0.6 23 176-198 21-43 (68)
96 3hug_A RNA polymerase sigma fa 28.1 13 0.00044 25.5 0.1 40 152-196 37-76 (92)
97 2pmy_A RAS and EF-hand domain- 27.4 21 0.00072 23.8 1.1 45 151-195 19-68 (91)
98 1zug_A Phage 434 CRO protein; 27.2 17 0.00057 22.8 0.5 23 176-198 19-41 (71)
99 2o8x_A Probable RNA polymerase 26.3 15 0.0005 23.3 0.1 40 152-196 15-54 (70)
100 3bs3_A Putative DNA-binding pr 26.2 18 0.00062 23.0 0.6 23 176-198 26-48 (76)
101 3fmy_A HTH-type transcriptiona 25.6 68 0.0023 20.7 3.4 41 151-198 9-49 (73)
102 1u78_A TC3 transposase, transp 25.4 43 0.0015 23.8 2.6 41 151-196 5-45 (141)
103 3c57_A Two component transcrip 25.1 16 0.00053 25.5 0.1 39 152-196 27-65 (95)
104 1fi6_A EH domain protein REPS1 24.7 35 0.0012 23.0 1.9 43 152-194 2-49 (92)
105 1adr_A P22 C2 repressor; trans 24.6 20 0.00068 22.7 0.5 23 176-198 21-43 (76)
106 2b5a_A C.BCLI; helix-turn-heli 24.2 21 0.00072 22.8 0.6 23 176-198 26-48 (77)
107 3bd1_A CRO protein; transcript 23.3 18 0.0006 23.8 0.1 23 176-198 14-36 (79)
108 1ku3_A Sigma factor SIGA; heli 23.0 49 0.0017 21.4 2.3 41 152-195 10-52 (73)
109 1r69_A Repressor protein CI; g 23.0 24 0.00081 21.9 0.7 23 176-198 17-39 (69)
110 3omt_A Uncharacterized protein 22.9 24 0.00083 22.5 0.7 23 176-198 24-46 (73)
111 2qko_A Possible transcriptiona 22.7 55 0.0019 24.5 2.9 39 158-197 34-72 (215)
112 1c07_A Protein (epidermal grow 22.0 36 0.0012 23.1 1.5 42 153-194 4-50 (95)
113 2kpj_A SOS-response transcript 21.5 26 0.00091 23.7 0.7 23 176-198 25-47 (94)
114 1y7y_A C.AHDI; helix-turn-heli 21.4 27 0.00092 21.9 0.7 23 176-198 29-51 (74)
115 3b7h_A Prophage LP1 protein 11 21.0 26 0.0009 22.3 0.6 23 176-198 23-45 (78)
116 1je8_A Nitrate/nitrite respons 20.7 25 0.00084 23.7 0.4 40 151-196 20-59 (82)
117 3o9x_A Uncharacterized HTH-typ 20.3 69 0.0023 23.0 2.8 40 152-198 70-109 (133)
118 3iz6_M 40S ribosomal protein S 20.0 89 0.003 24.4 3.5 31 169-199 57-88 (152)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=3e-19 Score=129.13 Aligned_cols=58 Identities=16% Similarity=0.332 Sum_probs=55.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQ----HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~----~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..++||.|+.|+.+|+..||..|+. ++||+..+|++||..|||+++||+|||||||+|
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK 75 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHS 75 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcC
Confidence 3567888999999999999999999 999999999999999999999999999999997
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-19 Score=127.77 Aligned_cols=59 Identities=31% Similarity=0.460 Sum_probs=55.3
Q ss_pred ccCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 142 EDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 142 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
...+.+|.|+.|+..|+.+||..|..++||+..+|..||..++|+++||+|||||||+|
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999975
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=5.2e-19 Score=124.08 Aligned_cols=58 Identities=24% Similarity=0.521 Sum_probs=55.1
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+..+++|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 61 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHH
Confidence 3557889999999999999999999999999999999999999999999999999986
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=126.34 Aligned_cols=58 Identities=16% Similarity=0.367 Sum_probs=54.2
Q ss_pred ccCCCCCCCccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 142 EDGVNARKKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 142 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
...++||.|+.|+.+|+..|| .|.. ++||+..+|++||.+++|+++||+|||||||+|
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k 75 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccC
Confidence 345578889999999999999 7999 999999999999999999999999999999997
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-19 Score=126.95 Aligned_cols=58 Identities=29% Similarity=0.497 Sum_probs=55.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+++|.|+.|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 76 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK 76 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999986
No 6
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-19 Score=122.95 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=55.1
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+++.++.|+.|+..|+.+||..|..++||+..++..||..+||+++||++||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4557889999999999999999999999999999999999999999999999999986
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=6.5e-19 Score=126.04 Aligned_cols=58 Identities=33% Similarity=0.492 Sum_probs=54.8
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+++|.|+.|+.+|+.+|+..|..++||+..+++.||.+|||+++||+|||||||+|
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 4557888999999999999999999999999999999999999999999999999975
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.1e-19 Score=122.99 Aligned_cols=58 Identities=36% Similarity=0.601 Sum_probs=54.8
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
++..+|.|+.|+.+|+.+||..|..++||+..++..||.++||++.||++||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAK 61 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccc
Confidence 3457889999999999999999999999999999999999999999999999999975
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-19 Score=122.64 Aligned_cols=59 Identities=27% Similarity=0.442 Sum_probs=55.4
Q ss_pred ccCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 142 EDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 142 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..++.++.|++|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQK 61 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHH
Confidence 34567889999999999999999999999999999999999999999999999999975
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.72 E-value=1.1e-18 Score=119.57 Aligned_cols=56 Identities=30% Similarity=0.529 Sum_probs=49.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 145 k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
++++.|+.|+..|+..||..|..++||+..++..||..+||++.||++||||||+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMK 57 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcc
Confidence 46788999999999999999999999999999999999999999999999999986
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.9e-18 Score=124.13 Aligned_cols=58 Identities=29% Similarity=0.505 Sum_probs=55.0
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+.+.+|.|++|+.+|+.+||..|..++||+..++..||..++|+++||+|||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 61 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHH
Confidence 3557889999999999999999999999999999999999999999999999999985
No 12
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=1.8e-18 Score=123.55 Aligned_cols=58 Identities=33% Similarity=0.603 Sum_probs=54.5
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..++++.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 63 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 63 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcc
Confidence 3456788999999999999999999999999999999999999999999999999975
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=1.1e-18 Score=120.11 Aligned_cols=56 Identities=34% Similarity=0.550 Sum_probs=51.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 145 k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+|.|+.|+..|+.+||..|..++||+..++..||..+||+++||++||||||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMK 57 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhh
Confidence 46788999999999999999999999999999999999999999999999999975
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.7e-18 Score=121.42 Aligned_cols=57 Identities=37% Similarity=0.684 Sum_probs=53.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
...+++|++|+.+|+.+||..|..++||+..++..||.++||+++||++||||||+|
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhh
Confidence 346788999999999999999999999999999999999999999999999999975
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.8e-18 Score=124.38 Aligned_cols=57 Identities=30% Similarity=0.550 Sum_probs=54.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+..+|.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 61 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 61 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999975
No 16
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-18 Score=121.91 Aligned_cols=58 Identities=21% Similarity=0.406 Sum_probs=54.8
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+.++.|++|+.+|+.+||..|..++||+..++..||..+||++.||++||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 61 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHH
Confidence 3457889999999999999999999999999999999999999999999999999975
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.71 E-value=1.6e-18 Score=118.40 Aligned_cols=55 Identities=31% Similarity=0.634 Sum_probs=50.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+|.|+.|+..|+..||..|..++||+..++..||..+||+++||++||||||+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAK 57 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccc
Confidence 5788999999999999999999999999999999999999999999999999975
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-18 Score=123.10 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=54.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
...+|.|+.|+.+|+.+||..|..++||+..++..||.++||+++||+|||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK 61 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999975
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=3.7e-18 Score=121.89 Aligned_cols=58 Identities=38% Similarity=0.567 Sum_probs=54.6
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+..++.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 67 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999999999999999999999999999975
No 20
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=1.5e-18 Score=118.33 Aligned_cols=57 Identities=35% Similarity=0.655 Sum_probs=47.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.||++||||||+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999999999999999999999999975
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=2.4e-18 Score=116.21 Aligned_cols=54 Identities=33% Similarity=0.581 Sum_probs=52.0
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 147 rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
||+|+.|+..|+.+||..|..++||+..++..||..+||+++||++||||||+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 54 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 54 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhh
Confidence 578999999999999999999999999999999999999999999999999975
No 22
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=2.4e-18 Score=115.60 Aligned_cols=55 Identities=35% Similarity=0.587 Sum_probs=52.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+++.|+.|+..|+.+|+..|..++||+..++..||..+||++.||++||||||+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 56 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYK 56 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhcc
Confidence 5678999999999999999999999999999999999999999999999999975
No 23
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-18 Score=119.99 Aligned_cols=59 Identities=32% Similarity=0.511 Sum_probs=55.3
Q ss_pred ccCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 142 EDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 142 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+++++.|++|+..|+.+|+..|..++||+..++..||..+||++.||+|||||||+|
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 63 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAK 63 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999975
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=3.6e-18 Score=118.39 Aligned_cols=56 Identities=27% Similarity=0.487 Sum_probs=53.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 145 k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+.+|.|+.|+.+|+..||..|..++||+..++..||..+||++.||++||||||+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 57 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999975
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.70 E-value=5.4e-18 Score=119.99 Aligned_cols=57 Identities=30% Similarity=0.511 Sum_probs=54.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+.+++|+.|+..|+..||..|..++||+..++..||..+||+++||++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 61 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 61 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence 456888999999999999999999999999999999999999999999999999975
No 26
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.70 E-value=3.6e-18 Score=122.92 Aligned_cols=58 Identities=31% Similarity=0.516 Sum_probs=53.9
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+++|.|+.|+..|+.+|+..|..++||+..++..||..+||+++||++||||||+|
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 72 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRAR 72 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhh
Confidence 4557888999999999999999999999999999999999999999999999999975
No 27
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-18 Score=123.67 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=54.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQH----STLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~----~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+.+|.|+.|+.+|+.+||.+|..+ +||+..+++.||.++||+++||+|||||||+|
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k 66 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRK 66 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHH
Confidence 4578889999999999999999999 99999999999999999999999999999975
No 28
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.69 E-value=4.8e-18 Score=124.18 Aligned_cols=58 Identities=33% Similarity=0.613 Sum_probs=51.0
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.++.+|.|+.|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 82 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 82 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHH
Confidence 3457888999999999999999999999999999999999999999999999999975
No 29
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=3.9e-18 Score=119.19 Aligned_cols=55 Identities=33% Similarity=0.585 Sum_probs=53.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
++|.|+.|+..|+..||..|..++||+..++..||..+||+++||+|||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 56 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 56 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhH
Confidence 5788999999999999999999999999999999999999999999999999975
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=5.7e-18 Score=115.31 Aligned_cols=54 Identities=35% Similarity=0.586 Sum_probs=51.5
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 147 rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+|.|+.|+..|+..||..|..++||+..++..||..+||++.||++||||||+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 55 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMK 55 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhH
Confidence 578999999999999999999999999999999999999999999999999975
No 31
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.68 E-value=2.1e-18 Score=120.30 Aligned_cols=56 Identities=30% Similarity=0.525 Sum_probs=53.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 145 k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
++++.|+.|+..|+..||..|..++||+..++..||..+||++.||++||||||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 57 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHH
Confidence 57889999999999999999999999999999999999999999999999999975
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=7.1e-18 Score=117.77 Aligned_cols=55 Identities=33% Similarity=0.627 Sum_probs=53.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+++.|+.|+..|+..||..|..++||+..++..||..+||++++|++||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 56 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYK 56 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhh
Confidence 5788999999999999999999999999999999999999999999999999975
No 33
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=6.9e-18 Score=117.81 Aligned_cols=55 Identities=36% Similarity=0.538 Sum_probs=53.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+|.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 56 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 56 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999975
No 34
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=9.6e-18 Score=124.15 Aligned_cols=58 Identities=34% Similarity=0.554 Sum_probs=54.7
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..++++.|+.|+..|+..||..|..++||+..+|..||..+||+++||+|||||||+|
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTK 71 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhh
Confidence 3457888999999999999999999999999999999999999999999999999975
No 35
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.3e-17 Score=117.71 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=54.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+++.+++|+.|+..|+.+|+.+|.. ++||+..+++.||.++||+++||++||||||+|
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 64 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 64 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhh
Confidence 3557888999999999999999986 999999999999999999999999999999975
No 36
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=7.2e-18 Score=121.70 Aligned_cols=57 Identities=33% Similarity=0.628 Sum_probs=50.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+.++|.|+.|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 74 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMK 74 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhh
Confidence 446888999999999999999999999999999999999999999999999999975
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=117.55 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=51.0
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 147 rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+++|++|+.+|+.+||..|..++||+..++..||..+||+++||+|||||||+|
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 61 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHH
Confidence 356678999999999999999999999999999999999999999999999985
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-17 Score=116.22 Aligned_cols=55 Identities=33% Similarity=0.567 Sum_probs=52.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.||.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 55 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAK 55 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHH
Confidence 3688999999999999999999999999999999999999999999999999975
No 39
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=2.5e-17 Score=116.28 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=53.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcccccccccccc
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..++|.|+.|+.+|+..|+..|+. +.||+.+.|+.||.++||++++|+|||||||
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR 60 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccce
Confidence 457899999999999999999999 9999999999999999999999999999998
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=1.5e-17 Score=117.20 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=51.4
Q ss_pred CCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 147 ARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 147 rr~Rt~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.++|+.|+..|+.+||..|.. ++||+..++..||.++||+++||++||||||+|
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 56 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHH
Confidence 467899999999999999996 999999999999999999999999999999975
No 41
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=2.7e-17 Score=113.19 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=52.8
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F---~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 60 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57889999999999999999 89999999999999999999999999999999986
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=1.7e-17 Score=117.32 Aligned_cols=55 Identities=25% Similarity=0.409 Sum_probs=51.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~-~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+++|+.|+..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k 57 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 57 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3577899999999999999995 999999999999999999999999999999975
No 43
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.6e-17 Score=123.41 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=51.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
...+|+|++|+..|+.+|+..|..++||+..+++.||.++||+++||++||||||+|
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 79 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYA 79 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhH
Confidence 345678999999999999999999999999999999999999999999999999975
No 44
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.5e-17 Score=118.52 Aligned_cols=53 Identities=28% Similarity=0.311 Sum_probs=50.0
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 148 r~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+|.+|+.+|+.+|+..|..++||+..+|++||..+||+++||+|||||||+|
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k 57 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHH
Confidence 45667999999999999999999999999999999999999999999999975
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.65 E-value=1.7e-17 Score=112.93 Aligned_cols=52 Identities=31% Similarity=0.521 Sum_probs=48.0
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 149 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.|+.|+..|+..||..|..++||+..++..||..+||+++||++||||||+|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 53 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAK 53 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhh
Confidence 5789999999999999999999999999999999999999999999999975
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-17 Score=117.02 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=51.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+.|++|+.+|+.+||..|..++||+..++..||.++||+++||++||||||+|
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 62 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYH 62 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHH
Confidence 3456889999999999999999999999999999999999999999999999975
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.1e-17 Score=122.88 Aligned_cols=57 Identities=32% Similarity=0.528 Sum_probs=50.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+..++.|+.|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 88 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 88 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHH
Confidence 457888999999999999999999999999999999999999999999999999975
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=3.3e-17 Score=121.36 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=55.0
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------LRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lg---------------Ls~rqVqvWFQNRRaK 200 (200)
..+++|.|+.|+..|+.+||.+|+.++||+..+|+.||..|+ |++.+|++||||||+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k 76 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKE 76 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999 9999999999999975
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.64 E-value=2.7e-17 Score=110.73 Aligned_cols=50 Identities=34% Similarity=0.592 Sum_probs=47.0
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+.|+..|+..||..|..++||+..+|..||..+||+++||++||||||+|
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 51 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTK 51 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhh
Confidence 57999999999999999999999999999999999999999999999975
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=4e-17 Score=115.31 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=52.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.++.|+.|+.+|+.+||..|..++||+..+++.||..+||+++||++||||||+|
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 60 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN 60 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHH
Confidence 4678999999999999999999999999999999999999999999999999975
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=5e-17 Score=114.67 Aligned_cols=55 Identities=29% Similarity=0.511 Sum_probs=52.3
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F---~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.||+|++|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r 58 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 36789999999999999999 89999999999999999999999999999999975
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=7.3e-17 Score=117.07 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=53.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+++++|++|+.+|+.+|+.+|.. ++||+..+|+.||.++||+++||++||||||+|
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r 64 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhh
Confidence 457888999999999999999987 599999999999999999999999999999975
No 53
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.63 E-value=5.3e-17 Score=118.36 Aligned_cols=57 Identities=28% Similarity=0.462 Sum_probs=53.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..++++|++|+.+|+.+|+.+|.. ++||+..++..||.++||+++||++||||||+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r 84 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 446777999999999999999999 999999999999999999999999999999975
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.63 E-value=7.1e-17 Score=109.72 Aligned_cols=52 Identities=31% Similarity=0.508 Sum_probs=49.8
Q ss_pred CCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 149 KKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+|++|+.+|+.+|+.+|.. ++||+..++..||.++||++.||++||||||+|
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r 55 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcc
Confidence 4678999999999999999 999999999999999999999999999999975
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=2.7e-17 Score=116.67 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=51.0
Q ss_pred CCCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESF-KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F-~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+.|.+++.+|+.+||..| ..++||+..+|.+||.++||+++||+|||||||+|
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k 63 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 63 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccC
Confidence 35667778899999999999 99999999999999999999999999999999975
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=7.7e-17 Score=117.14 Aligned_cols=54 Identities=30% Similarity=0.522 Sum_probs=51.3
Q ss_pred CCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 147 ARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 147 rr~Rt~ft~~Ql~~Le~~F---~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
||+|++|+..|+.+|+.+| ..++||+..++..||.++||++.||++||||||+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r 58 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6789999999999999999 89999999999999999999999999999999975
No 57
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-16 Score=110.32 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=47.8
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+..++..|+..||..|..++||+..+|..||.++||+++||+|||||||+|
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak 57 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAG 57 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCC
Confidence 345668999999999999999999999999999999999999999999987
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.61 E-value=7.1e-17 Score=130.92 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=47.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+++||+|++|+..|+..||..|..++||+..+|..||..+||+++||+|||||||+|
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 153 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQK 153 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHH
Confidence 3557888999999999999999999999999999999999999999999999999975
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.61 E-value=1.2e-16 Score=115.80 Aligned_cols=55 Identities=29% Similarity=0.467 Sum_probs=49.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
++++|++|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+|
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r 59 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcc
Confidence 3456777999999999999999 999999999999999999999999999999975
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.61 E-value=1e-16 Score=129.13 Aligned_cols=57 Identities=26% Similarity=0.495 Sum_probs=51.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.++||+|+.|+..|+..||..|..++||+..+|..||.++||+++||+|||||||+|
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 155 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 155 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhh
Confidence 457888999999999999999999999999999999999999999999999999985
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=1.1e-16 Score=127.51 Aligned_cols=58 Identities=29% Similarity=0.521 Sum_probs=51.7
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+++||+|+.|+..|+..||..|..++||+..+|..||..+||+++||+|||||||+|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 141 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQR 141 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhh
Confidence 3457888999999999999999999999999999999999999999999999999975
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-16 Score=115.47 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=48.8
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 149 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
++..|+.+|+.+||..|..++||+..+|+.||.++||+++||+|||||||+|
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k 67 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKL 67 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHH
Confidence 3445999999999999999999999999999999999999999999999975
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.60 E-value=2.4e-16 Score=125.69 Aligned_cols=57 Identities=23% Similarity=0.440 Sum_probs=54.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+++||+|+.|+..|+.+||.+|..++||+..+|..||.++||+++||+|||||||+|
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k 147 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQT 147 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhc
Confidence 457888999999999999999999999999999999999999999999999999975
No 64
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.1e-16 Score=116.80 Aligned_cols=50 Identities=28% Similarity=0.474 Sum_probs=48.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+|+.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k 65 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchH
Confidence 38999999999999999999999999999999999999999999999974
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.59 E-value=2.8e-16 Score=118.04 Aligned_cols=58 Identities=17% Similarity=0.420 Sum_probs=49.7
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQ------------------LN---LRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~------------------lg---Ls~rqVqvWFQNRRaK 200 (200)
..++||.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 3557888999999999999999999999999999999999 88 9999999999999985
No 66
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=2.4e-16 Score=109.98 Aligned_cols=46 Identities=28% Similarity=0.573 Sum_probs=43.0
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 155 KEQSALLEESF-KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 155 ~~Ql~~Le~~F-~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k 55 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 55 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 45799999999 57999999999999999999999999999999975
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.57 E-value=2.9e-16 Score=126.00 Aligned_cols=57 Identities=30% Similarity=0.433 Sum_probs=54.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+++||+|++|+..|+..||..|..++||+..+|..||.++||+++||+|||||||+|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k 150 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQK 150 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccc
Confidence 457788999999999999999999999999999999999999999999999999985
No 68
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=5.8e-16 Score=124.67 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=51.1
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..+.||+|+.|+..|+..|+..|..++||+..+|..||.++||+++||+|||||||+|
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r 151 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRR 151 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcc
Confidence 3457888999999999999999999999999999999999999999999999999986
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.2e-16 Score=116.28 Aligned_cols=57 Identities=19% Similarity=0.447 Sum_probs=53.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCccccccccccccCC
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQL---------------------NLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~l---------------------gLs~rqVqvWFQNRRaK 200 (200)
+++||.|+.|++.|+.+||..|..++||+..+|++||..| .|++.+|++||||||+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 4578889999999999999999999999999999999999 79999999999999974
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=6.9e-16 Score=108.90 Aligned_cols=50 Identities=34% Similarity=0.606 Sum_probs=47.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..++..|+..||..|..++||+..+|..||.++||+++||+|||||||+|
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak 58 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYK 58 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhh
Confidence 35799999999999999999999999999999999999999999999975
No 71
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.55 E-value=6.1e-16 Score=108.45 Aligned_cols=48 Identities=31% Similarity=0.398 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 153 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.+.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k 58 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhh
Confidence 468999999999999999999999999999999999999999999974
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=7.4e-15 Score=102.53 Aligned_cols=49 Identities=29% Similarity=0.392 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 152 RLTKEQSALLEESFK---QHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~---~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
+|+.+|+.+|+.+|. .++||+..++..||.++||+++||++||||||+|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r 55 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHH
Confidence 799999999999999 9999999999999999999999999999999975
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.3e-14 Score=99.21 Aligned_cols=45 Identities=18% Similarity=0.396 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccC
Q 029009 155 KEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRA 199 (200)
Q Consensus 155 ~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRa 199 (200)
+.|+..|+.+|..+++|+.+++..||..+||++++|||||||||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 568999999999999999999999999999999999999999996
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.39 E-value=2.1e-14 Score=119.61 Aligned_cols=58 Identities=17% Similarity=0.407 Sum_probs=51.5
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------------LRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lg---------------------Ls~rqVqvWFQNRRaK 200 (200)
..++||.|+.|+..|+.+|+..|..++||+..+|++||..++ |++.+|++||||||+|
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 355788899999999999999999999999999999999999 9999999999999974
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.36 E-value=2e-13 Score=115.70 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=52.5
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccccccccccccCC
Q 029009 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------------LRPRQVEVWFQNRRAR 200 (200)
Q Consensus 143 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lg---------------------Ls~rqVqvWFQNRRaK 200 (200)
..+.||.|+.|++.|+.+|+..|..++||+..+|++||..+| |++.||++||||||++
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 355788899999999999999999999999999999999988 8999999999999985
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.28 E-value=4.9e-13 Score=117.95 Aligned_cols=55 Identities=33% Similarity=0.649 Sum_probs=51.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 146 ~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
.++.|+.++..|+..|++.|+.++||+..+|++||.++||+++||+|||||||+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~ 419 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 419 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccc
Confidence 3455778999999999999999999999999999999999999999999999987
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.26 E-value=7e-13 Score=97.91 Aligned_cols=50 Identities=30% Similarity=0.408 Sum_probs=47.0
Q ss_pred ccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccccccccccccCC
Q 029009 151 LRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~---~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRRaK 200 (200)
..|++++..+|+.+|.. ++||+..+|..||.++||++.||++||||||+|
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R 62 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35899999999999987 999999999999999999999999999999975
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.24 E-value=9.5e-08 Score=59.55 Aligned_cols=13 Identities=62% Similarity=1.380 Sum_probs=11.9
Q ss_pred cccccccccccCC
Q 029009 188 RQVEVWFQNRRAR 200 (200)
Q Consensus 188 rqVqvWFQNRRaK 200 (200)
+||+|||||||+|
T Consensus 1 rQVkIWFQNRRaK 13 (37)
T 2nzz_A 1 RQIKIWFQNRRMK 13 (37)
T ss_dssp CCTTTTTTCSHHH
T ss_pred CCceeccHHHHHH
Confidence 6999999999986
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0018 Score=45.41 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q 029009 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNR 197 (200)
Q Consensus 158 l~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNR 197 (200)
.+.|+++|..++.+.......|+.+..|+..||+-||--|
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999533
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=73.39 E-value=1.5 Score=28.17 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=30.9
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccc
Q 029009 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (200)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQ 195 (200)
|..|+.++.......+... .........+|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568888876665555433 22111256899999999999999975
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.17 E-value=3.1 Score=30.31 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=35.9
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q 029009 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNR 197 (200)
Q Consensus 148 r~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNR 197 (200)
++|..|+.++...+-..+..+..... ..+|..+|++...|..|..++
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhch
Confidence 35778999998777777755555543 368999999999999998664
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=66.07 E-value=5.5 Score=27.43 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccc
Q 029009 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (200)
Q Consensus 147 rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQ 195 (200)
++.+..|+.++....-..+... . + ...+|.++|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~-s---~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E-S---KASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C-C---HHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C-C---HHHHHHHHCcCHHHHHHHHH
Confidence 3456678888865555556432 2 2 45789999999999999974
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=62.05 E-value=6.8 Score=22.63 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q 029009 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNR 197 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNR 197 (200)
.++.++...+...+... . + ..++|..+|++...|..|...-
T Consensus 5 ~l~~~~~~~i~~~~~~g-~-s---~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHhhH
Confidence 46677665555555432 2 2 4578999999999999998643
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=49.96 E-value=6.7 Score=23.11 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q 029009 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNR 197 (200)
Q Consensus 153 ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNR 197 (200)
++.++...+...+... .+ ..+||..+|++..-|..|+...
T Consensus 6 ~~~~~~~~i~~l~~~g--~s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--HP---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHHHHHHHHTT--CC---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcC--CC---HHHHHHHHCCCHHHHHHHHHHc
Confidence 4555555555555433 22 4578999999999999998643
No 85
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=48.23 E-value=18 Score=27.18 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=37.4
Q ss_pred CCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCCccccccccccc
Q 029009 147 ARKKLRLTKEQSALLEESF-KQHSTLNPKQKQALA-RQL--NLRPRQVEVWFQNR 197 (200)
Q Consensus 147 rr~Rt~ft~~Ql~~Le~~F-~~~~~Ps~~~r~~LA-~~l--gLs~rqVqvWFQNR 197 (200)
+++|.++|.+|...+-.++ ..++..+..+....| .++ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6778899999999999998 677777665444432 267 77888888776553
No 86
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=47.63 E-value=26 Score=24.44 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=36.3
Q ss_pred CccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhC--CCccccccccc
Q 029009 150 KLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLN--LRPRQVEVWFQ 195 (200)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~lg--Ls~rqVqvWFQ 195 (200)
...++.++...|...|.. +.+.+..+...+...+| ++..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 446888999999999874 67899999988888886 56677777764
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=41.94 E-value=15 Score=25.29 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=30.0
Q ss_pred CccCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 150 KLRLTKEQSALLEESFKQH-STLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~-~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
|..|+.++....-..+... .. -...+|..+|++...|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888776555555322 22 2568899999999999999743
No 88
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=36.71 E-value=67 Score=23.61 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCCccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccc
Q 029009 148 RKKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQ 189 (200)
Q Consensus 148 r~Rt~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~lgLs~rq 189 (200)
.+|..++.+|+..|+..|.. ..+.+..+...+.+.+|+.+..
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 34567999999999999974 6689999988888888865543
No 89
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=35.03 E-value=20 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
...+|..+|+...+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999985444
No 90
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=33.53 E-value=13 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=31.4
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
...+++.+..+|...++-- ...+||..++++...|+.+..+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 3468999999998765422 2368899999999999988754
No 91
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.09 E-value=0.81 Score=35.68 Aligned_cols=30 Identities=0% Similarity=-0.063 Sum_probs=21.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH
Q 029009 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP 173 (200)
Q Consensus 144 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~~Ps~ 173 (200)
...+|.|+.|+..|++.|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 346788999999999999999999999864
No 92
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=32.22 E-value=34 Score=23.78 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=30.3
Q ss_pred CccCCHHHHHHHHHHHhhC--CCCCH-HHHHHHHHHhCCCccccccccc
Q 029009 150 KLRLTKEQSALLEESFKQH--STLNP-KQKQALARQLNLRPRQVEVWFQ 195 (200)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~--~~Ps~-~~r~~LA~~lgLs~rqVqvWFQ 195 (200)
+..|+.++....-..+... .+.+. .....+|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468888865444444221 12221 3466899999999999999964
No 93
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.94 E-value=79 Score=23.37 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=30.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
..++.++...+...+... .+ ...+|..+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G--~s---~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG--VR---PCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT--CC---HHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHHH
Confidence 357888777666666533 22 446799999999999999864
No 94
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.01 E-value=14 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999998765
No 95
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=28.74 E-value=16 Score=22.60 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
...||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 96
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.14 E-value=13 Score=25.49 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
.++..+..+|...|-... .-.+||..+|++...|+.+...
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 477888888887664332 2457899999999999987754
No 97
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.38 E-value=21 Score=23.83 Aligned_cols=45 Identities=29% Similarity=0.368 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccccccccc
Q 029009 151 LRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~lgLs~rqVqvWFQ 195 (200)
..++.++...|...|.. +.+.+..+...+...+|++..+|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 34677888888888863 5578888888888888888888877764
No 98
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.24 E-value=17 Score=22.81 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
...||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.30 E-value=15 Score=23.27 Aligned_cols=40 Identities=15% Similarity=-0.014 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
.+++.+..+|...|-.. . ...++|..+|++...|+.|...
T Consensus 15 ~L~~~~r~il~l~~~~g--~---s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--L---SYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--C---CHHHHHHHHTSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHHH
Confidence 47788888888876433 2 2457899999999999887653
No 100
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.21 E-value=18 Score=23.00 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999988765
No 101
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=25.63 E-value=68 Score=20.68 Aligned_cols=41 Identities=2% Similarity=-0.026 Sum_probs=29.6
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccc
Q 029009 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..++.+.+..+......+ ..+||..+|++...|..|=++++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 357777777776554322 35789999999999999987655
No 102
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.45 E-value=43 Score=23.80 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=30.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
..++.++...+...+... . + ..++|..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~-s---~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHHc
Confidence 457777777666666532 2 2 457899999999999999864
No 103
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.09 E-value=16 Score=25.48 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
.++..+..+|...++-. ...++|..+|++...|+.+..+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r 65 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 58899999998864322 2357899999999999887654
No 104
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.72 E-value=35 Score=22.99 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccccccc
Q 029009 152 RLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWF 194 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~lgLs~rqVqvWF 194 (200)
.++.++...+...|.. ..+.+..+...+...+|++..+++.+|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567778888888863 456777777777777788777766554
No 105
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.60 E-value=20 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999988765
No 106
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.17 E-value=21 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45789999999999999987765
No 107
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=23.31 E-value=18 Score=23.78 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999987765
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=23.04 E-value=49 Score=21.36 Aligned_cols=41 Identities=5% Similarity=0.071 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHhCCCccccccccc
Q 029009 152 RLTKEQSALLEESFKQH--STLNPKQKQALARQLNLRPRQVEVWFQ 195 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~--~~Ps~~~r~~LA~~lgLs~rqVqvWFQ 195 (200)
.+++.+..+|...|-.. .-.+ -.++|..+|++...|+.|..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHH
Confidence 47888999998888521 1122 35789999999999988754
No 109
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.03 E-value=24 Score=21.88 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..+||..+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999987765
No 110
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.88 E-value=24 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999988764
No 111
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=22.69 E-value=55 Score=24.52 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccccccccccc
Q 029009 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNR 197 (200)
Q Consensus 158 l~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNR 197 (200)
+......|....|-... ...||++.|++..-|..+|.++
T Consensus 34 l~aa~~lf~~~G~~~~t-v~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 34 VNAAIEVLAREGARGLT-FRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHTCTTTCC-HHHHHHHSSSTTTCHHHHCSCH
T ss_pred HHHHHHHHHHhChhhcc-HHHHHHHcCCCcchHHHhCCCH
Confidence 33444557777764433 5678999999999999999886
No 112
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.99 E-value=36 Score=23.12 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcccccccc
Q 029009 153 LTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWF 194 (200)
Q Consensus 153 ft~~Ql~~Le~~F~~-----~~~Ps~~~r~~LA~~lgLs~rqVqvWF 194 (200)
++.++...+...|.. ..+.+..+...+...+|++..+|+.+|
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 456677777777753 456777777777777787777776555
No 113
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=21.49 E-value=26 Score=23.69 Aligned_cols=23 Identities=13% Similarity=0.511 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..+||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 35789999999999999998765
No 114
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.45 E-value=27 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999987764
No 115
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.00 E-value=26 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcccccccccccc
Q 029009 176 KQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999998765
No 116
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.70 E-value=25 Score=23.70 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccc
Q 029009 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (200)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQN 196 (200)
..++..+..+|..+++ . . ...++|..+|++...|+.+..+
T Consensus 20 ~~Lt~~e~~vl~l~~~--g-~---s~~eIA~~l~is~~tV~~~l~r 59 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G-L---PNKMIARRLDITESTVKVHVKH 59 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T-C---CHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHc--C-C---CHHHHHHHHCcCHHHHHHHHHH
Confidence 3588999999888532 2 2 3457899999999999887653
No 117
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.34 E-value=69 Score=23.00 Aligned_cols=40 Identities=5% Similarity=0.050 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcccccccccccc
Q 029009 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (200)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~Ps~~~r~~LA~~lgLs~rqVqvWFQNRR 198 (200)
.++.+++..|..... .+ ..+||..+|++...|..|-++++
T Consensus 70 ~~~~~~l~~~R~~~g----ls---q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLS----LT---QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHHHHTT----CC---HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcC----CC---HHHHHHHHCCCHHHHHHHHCCCC
Confidence 456666666655433 22 34689999999999999987765
No 118
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.02 E-value=89 Score=24.37 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHhC-CCccccccccccccC
Q 029009 169 STLNPKQKQALARQLN-LRPRQVEVWFQNRRA 199 (200)
Q Consensus 169 ~~Ps~~~r~~LA~~lg-Ls~rqVqvWFQNRRa 199 (200)
..++.++...|...+. ...-.|..||-||+.
T Consensus 57 g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~k 88 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHNPRQFKVPDWFLNRKK 88 (152)
T ss_dssp TTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCC
T ss_pred CcCCHHHHHHHHHHHHhhcccCcchhhhhhhc
Confidence 3466666666665553 122347789999973
Done!