Query 029010
Match_columns 200
No_of_seqs 150 out of 340
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a6s_A Toxin YOEB; YEFM, antit 57.2 34 0.0012 22.6 6.2 20 92-112 21-40 (84)
2 1z8m_A Conserved hypothetical 54.5 9.9 0.00034 25.6 3.1 17 96-112 25-41 (88)
3 3g5o_B Uncharacterized protein 51.6 18 0.00061 25.8 4.2 21 91-112 34-55 (102)
4 2kvu_A MKL/myocardin-like prot 47.5 42 0.0014 23.5 5.4 39 68-112 29-67 (75)
5 4gzv_A Hypothetical protein; A 47.5 99 0.0034 24.1 8.6 46 117-167 9-54 (142)
6 3oei_C RELK (toxin RV3358); to 43.2 28 0.00096 25.1 4.1 19 92-111 33-51 (96)
7 2khe_A Toxin RELE, toxin-like 42.6 39 0.0013 21.9 4.6 22 91-112 19-42 (89)
8 3bpq_B Toxin RELE3; protein to 40.9 41 0.0014 21.9 4.4 19 91-109 17-35 (88)
9 3p42_A Predicted protein; beta 39.6 30 0.001 28.7 4.3 65 68-134 52-129 (236)
10 1qbj_A Protein (double-strande 35.9 55 0.0019 22.6 4.6 57 71-130 9-73 (81)
11 2heo_A Z-DNA binding protein 1 34.7 12 0.0004 24.8 0.8 53 69-126 7-65 (67)
12 1wmi_A RELE, hypothetical prot 34.5 44 0.0015 21.7 3.7 20 92-112 20-39 (90)
13 1ug7_A 2610208M17RIK protein; 29.4 60 0.0021 24.9 4.1 39 69-107 41-79 (128)
14 4i95_A Putative uncharacterize 26.3 2.3E+02 0.0079 22.0 8.8 45 118-167 10-54 (142)
15 1qgp_A Protein (double strande 26.1 65 0.0022 21.8 3.5 52 72-126 14-73 (77)
16 1use_A VAsp, vasodilator-stimu 25.2 1.3E+02 0.0046 19.0 4.6 18 65-82 4-21 (45)
17 3op9_A PLI0006 protein; struct 21.2 1.3E+02 0.0043 20.8 4.4 31 75-111 84-114 (114)
18 1uxc_A FRUR (1-57), fructose r 20.5 1.4E+02 0.0048 19.5 4.2 31 76-106 16-46 (65)
No 1
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=57.23 E-value=34 Score=22.61 Aligned_cols=20 Identities=0% Similarity=0.160 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 029010 92 PEDQARVDQIARKLEAVNDIK 112 (200)
Q Consensus 92 ~~~r~~I~elI~~LEalNPt~ 112 (200)
....+.|.++++.|+. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 4456888888888865 6644
No 2
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=54.50 E-value=9.9 Score=25.62 Aligned_cols=17 Identities=6% Similarity=0.214 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcCCCC
Q 029010 96 ARVDQIARKLEAVNDIK 112 (200)
Q Consensus 96 ~~I~elI~~LEalNPt~ 112 (200)
..+.++++.|...||.+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 56888888886557643
No 3
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=51.59 E-value=18 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCC
Q 029010 91 SPEDQARVDQIA-RKLEAVNDIK 112 (200)
Q Consensus 91 s~~~r~~I~elI-~~LEalNPt~ 112 (200)
.+..+..|.+.| ..|+ .||.+
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~ 55 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLR 55 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTT
T ss_pred CHHHHHHHHHHHHHHHH-hCccc
Confidence 456778898888 7785 67753
No 4
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=47.53 E-value=42 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 029010 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK 112 (200)
Q Consensus 68 ~~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEalNPt~ 112 (200)
-.+.+||++|-. ||+..+--..+-|++|.+.+|..++.+
T Consensus 29 lkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 29 MKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp SCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred CcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 378899998865 788876666677888888887766543
No 5
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=47.48 E-value=99 Score=24.13 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=27.1
Q ss_pred CCCCCceEEEEEeccccccccCCCCccccccceEEEEeCCCCeEEEEEeCC
Q 029010 117 SNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWP 167 (200)
Q Consensus 117 s~lL~G~W~L~YTSs~~~l~~~~p~~l~~vg~i~Q~Id~~~~~v~N~v~fp 167 (200)
..-|.|-|+|.+--+...-. + +-...+.++-+|..+ ||..|++-.+
T Consensus 9 ~~~L~GvWQ~c~y~~~~~~~---~-~~l~~s~~~KIlS~D-gtF~N~~m~~ 54 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESPDV---P-GALKPSNTFKVLSDD-GRIVNFTIIP 54 (142)
T ss_dssp SCCCCEEEEEEEEEESSTTS---C-CEEEEEEEEEEECTT-SEEEEEECCT
T ss_pred cccceEEeEEeeEeecCCCC---C-ceEeecCceEEECCC-CcEEEEEEeC
Confidence 45699999998544332211 1 111244567777744 7888876554
No 6
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=43.19 E-value=28 Score=25.09 Aligned_cols=19 Identities=5% Similarity=0.282 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 029010 92 PEDQARVDQIARKLEAVNDI 111 (200)
Q Consensus 92 ~~~r~~I~elI~~LEalNPt 111 (200)
+..+.+|.++|.+|+ .||.
T Consensus 33 k~~~krI~~~I~~l~-~nP~ 51 (96)
T 3oei_C 33 RKTARRITRLIGEIQ-RDPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHHHHH-hCCC
Confidence 466789999999987 4774
No 7
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=42.64 E-value=39 Score=21.89 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHH--hcCCCC
Q 029010 91 SPEDQARVDQIARKLE--AVNDIK 112 (200)
Q Consensus 91 s~~~r~~I~elI~~LE--alNPt~ 112 (200)
.+..+++|.+.+++|. ..||..
T Consensus 19 ~~~~~~~i~~~i~~l~~~~~~P~~ 42 (89)
T 2khe_A 19 DREVARRILRFLRERVATLEDPRS 42 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred CHHHHHHHHHHHHHhhccccCCCc
Confidence 3555677777777774 345543
No 8
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=40.90 E-value=41 Score=21.95 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHHhcC
Q 029010 91 SPEDQARVDQIARKLEAVN 109 (200)
Q Consensus 91 s~~~r~~I~elI~~LEalN 109 (200)
.+..+..|.++++.++.+.
T Consensus 17 ~~~~~~~i~~~i~~~~~l~ 35 (88)
T 3bpq_B 17 PGHIRKRIKLIIEECQNSN 35 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 3556677888888887653
No 9
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=39.62 E-value=30 Score=28.71 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC-------------CCCcCCCCCceEEEEEeccccc
Q 029010 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK-------------EPLKSNLLNGKWELLYTTSQSL 134 (200)
Q Consensus 68 ~~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEalNPt~-------------~P~~s~lL~G~W~L~YTSs~~~ 134 (200)
.+.+..|++|++.+..... ....++.+.+..++++|+...++. .|....+|+|...|..-..+++
T Consensus 52 ~~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~n~~L~~gd~L~iP~r~~t 129 (236)
T 3p42_A 52 AKALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVT 129 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGGSCBCCEEEEEECCCCCSE
T ss_pred HHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCCCCccCCCCEEEECCCCCE
Confidence 3566788888888754431 123356788999999999987664 2223467899888887766554
No 10
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=35.90 E-value=55 Score=22.59 Aligned_cols=57 Identities=9% Similarity=0.314 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEEEec
Q 029010 71 ESFKEELFQAIKPLDRGAEASPE--------DQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTT 130 (200)
Q Consensus 71 ~~lK~~LL~ai~~t~RG~~as~~--------~r~~I~elI~~LEalNPt~~P~~s~lL~G~W~L~YTS 130 (200)
++..+++|+++...+-|-.++.. .|..|.+.+..||..+-...- .. =.|.|++.-..
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~--~~~~W~i~~~~ 73 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AG--TPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SS--SSCEEEEC---
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CC--CCCeeEEeCcH
Confidence 35677888888866644444432 267899999999998743210 01 12899886543
No 11
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=34.65 E-value=12 Score=24.80 Aligned_cols=53 Identities=9% Similarity=0.215 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCH------HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 029010 69 RVESFKEELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (200)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~------~~r~~I~elI~~LEalNPt~~P~~s~lL~G~W~L 126 (200)
+..+.++++|+++...++.+..+. -.|..|.++|..||..+-.- ++ =.|.|+|
T Consensus 7 ~m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~----~~-~~G~y~l 65 (67)
T 2heo_A 7 TGDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS----SP-SPKYWSI 65 (67)
T ss_dssp --CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE----EE-ETTEEEE
T ss_pred cccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe----cC-CCceEee
Confidence 344578889999976433333222 22789999999999987532 11 2477875
No 12
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=34.49 E-value=44 Score=21.70 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 029010 92 PEDQARVDQIARKLEAVNDIK 112 (200)
Q Consensus 92 ~~~r~~I~elI~~LEalNPt~ 112 (200)
+..+++|.+.++.|+. ||..
T Consensus 20 ~~~~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 20 KAHYRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp HHHHHHHHHHHHHHTT-CSCC
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 5566788888888854 5643
No 13
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=29.38 E-value=60 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHh
Q 029010 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEA 107 (200)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa 107 (200)
+-+.+-.+|-..+..++|-...+++|++-|.+++.-||-
T Consensus 41 eY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL~l 79 (128)
T 1ug7_A 41 EYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLEL 79 (128)
T ss_dssp HHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 455677777888889987777789999999999988886
No 14
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=26.31 E-value=2.3e+02 Score=22.03 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCCCceEEEEEeccccccccCCCCccccccceEEEEeCCCCeEEEEEeCC
Q 029010 118 NLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWP 167 (200)
Q Consensus 118 ~lL~G~W~L~YTSs~~~l~~~~p~~l~~vg~i~Q~Id~~~~~v~N~v~fp 167 (200)
.-|.|.|+|..=-+...- -|..| +-+..+-+|. ++|+..|++-.|
T Consensus 10 ~~L~GvWQ~C~y~s~~pd---~~g~L-~psn~lKIlS-dDgtF~Ni~m~~ 54 (142)
T 4i95_A 10 AHLQGIWQLCHYVSENPD---IPGVL-KPSNTFKVLS-DDGRIVNFTIRP 54 (142)
T ss_dssp CSCCEEEEEEEEECSSTT---SCCEE-EEEEEEEEEC-TTSEEEEEECCT
T ss_pred ccceeEeEEEEEecCCCC---CceEe-ccCccEEEEc-CCCcEEEEEEec
Confidence 459999999865443221 22112 2344677776 457899987765
No 15
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.12 E-value=65 Score=21.77 Aligned_cols=52 Identities=10% Similarity=0.342 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccCCCCCCCCHHH--------HHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 029010 72 SFKEELFQAIKPLDRGAEASPED--------QARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (200)
Q Consensus 72 ~lK~~LL~ai~~t~RG~~as~~~--------r~~I~elI~~LEalNPt~~P~~s~lL~G~W~L 126 (200)
+..+++|+++.....|-.++..+ +..|...+..||..+=...--. =.|.|++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~---~~~~W~i 73 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS---SSCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCceEe
Confidence 44677888888777544444322 5789999999999774311101 1288876
No 16
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.15 E-value=1.3e+02 Score=18.96 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.6
Q ss_pred cChhhHHHHHHHHHHHhc
Q 029010 65 FSTKRVESFKEELFQAIK 82 (200)
Q Consensus 65 ~~~~~~~~lK~~LL~ai~ 82 (200)
+...+.+.+|+++|+-+.
T Consensus 4 ~~~~dle~~KqEIL~E~R 21 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVK 21 (45)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 344688889999988765
No 17
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.17 E-value=1.3e+02 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 029010 75 EELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDI 111 (200)
Q Consensus 75 ~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEalNPt 111 (200)
.+++..+.. .++++++.|.++++.++.+.|+
T Consensus 84 ~~~~~~l~~------~~~~~~~~i~~~i~~i~~~~pn 114 (114)
T 3op9_A 84 KQWLLSLNL------RSEEEIAKIKILVDTVETLYPN 114 (114)
T ss_dssp HHHHHHGGG------SCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHc------CCHHHHHHHHHHHHHHHHHcCC
Confidence 344555554 5789999999999999998763
No 18
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.47 E-value=1.4e+02 Score=19.45 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=21.2
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 029010 76 ELFQAIKPLDRGAEASPEDQARVDQIARKLE 106 (200)
Q Consensus 76 ~LL~ai~~t~RG~~as~~~r~~I~elI~~LE 106 (200)
.+-..+.|.......+++.+++|.+++++|.
T Consensus 16 TVSrvLng~~~~~~vs~et~~rI~~aa~~lg 46 (65)
T 1uxc_A 16 TASYVINGKAKQYRVSDKTVEKVMAVVREHN 46 (65)
T ss_dssp HHHHHHHTCTTTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 3344555544224688999999999998873
Done!