Query 029010
Match_columns 200
No_of_seqs 150 out of 340
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 09:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029010.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029010hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 46.8 8.3 0.0006 32.9 4.2 42 87-128 21-73 (427)
2 d1o75a2 b.1.20.1 (A:333-414) T 28.2 6.7 0.00049 25.5 0.3 23 170-192 52-74 (82)
3 d2gyc31 a.108.1.1 (3:2-48) Rib 25.6 31 0.0022 20.6 3.0 30 74-112 3-32 (47)
4 d2a6sa1 d.298.1.1 (A:1-83) Tox 23.4 43 0.0031 21.9 3.9 32 91-124 20-56 (83)
5 d2q22a1 d.365.1.1 (A:8-138) Un 23.1 78 0.0057 22.4 5.6 61 67-129 25-88 (131)
6 d1wmia1 d.298.1.2 (A:1-88) Hyp 20.9 44 0.0032 21.2 3.5 23 91-114 19-41 (88)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 20.8 34 0.0025 20.8 2.7 18 89-106 26-43 (57)
8 d1ztwa1 e.8.1.2 (A:24-278) MML 20.5 33 0.0024 26.3 3.2 43 86-128 39-90 (255)
9 d2hsga1 a.35.1.5 (A:2-58) Gluc 20.5 35 0.0025 20.7 2.7 18 89-106 27-44 (57)
10 d1z8ma1 d.298.1.2 (A:1-88) Hyp 19.0 17 0.0012 24.0 0.9 29 95-123 24-52 (88)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=46.75 E-value=8.3 Score=32.88 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCC-----CCCCcCCCC------CceEEEEE
Q 029010 87 GAEASPEDQARVDQIARKLEAVNDI-----KEPLKSNLL------NGKWELLY 128 (200)
Q Consensus 87 G~~as~~~r~~I~elI~~LEalNPt-----~~P~~s~lL------~G~W~L~Y 128 (200)
--..++++++++.++|++|+..+=. ..|-.++.+ .|+||++-
T Consensus 21 q~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 21 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 4567899999999999999998733 334444433 49999985
No 2
>d1o75a2 b.1.20.1 (A:333-414) Tp47 lipoprotein, middle and C-terminal domains {Treponema pallidum [TaxId: 160]}
Probab=28.24 E-value=6.7 Score=25.51 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.6
Q ss_pred ceeeeEEEEcCCceEEEEEeeEE
Q 029010 170 NQATANLVPLNSKRVAVKFDYFR 192 (200)
Q Consensus 170 ~~V~A~~~v~s~~Rv~V~F~~~~ 192 (200)
+.+.|+|++-.+..|+|+|++++
T Consensus 52 nvlsadftpgteytvevrfkefg 74 (82)
T d1o75a2 52 NVLSADFTPGTEYTVEVRFKEFG 74 (82)
T ss_dssp EEEEEEECTTCEEEEEEECSSSC
T ss_pred ceeccccCCCceEEEEEEeeccc
Confidence 47789999999999999999754
No 3
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=25.60 E-value=31 Score=20.56 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 029010 74 KEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK 112 (200)
Q Consensus 74 K~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEalNPt~ 112 (200)
|+++|++++... --+|.+||..+|..-...
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhCcc
Confidence 788899988653 367899999999876543
No 4
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=23.42 E-value=43 Score=21.86 Aligned_cols=32 Identities=22% Similarity=0.487 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCC---C--CCCcCCCCCceE
Q 029010 91 SPEDQARVDQIARKLEAVNDI---K--EPLKSNLLNGKW 124 (200)
Q Consensus 91 s~~~r~~I~elI~~LEalNPt---~--~P~~s~lL~G~W 124 (200)
.+...++|+++++++.. ||. + +|+. -.|.|-|
T Consensus 20 d~k~~kkI~~ll~~i~~-~p~~g~gkpE~Lk-g~l~g~w 56 (83)
T d2a6sa1 20 DKRIVKKINELIKDTRR-TPFEGKGKPEPLK-HNLSGFW 56 (83)
T ss_dssp CHHHHHHHHHHHHHHHH-STTSSTTCCEECC-GGGTTCE
T ss_pred CHHHHHHHHHHHHHHHh-CcCCCCCCCcccc-CCCCCEE
Confidence 35667899999999975 553 2 3333 3477777
No 5
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=23.13 E-value=78 Score=22.37 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHhccCCC---CCCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEEEe
Q 029010 67 TKRVESFKEELFQAIKPLDR---GAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYT 129 (200)
Q Consensus 67 ~~~~~~lK~~LL~ai~~t~R---G~~as~~~r~~I~elI~~LEalNPt~~P~~s~lL~G~W~L~YT 129 (200)
..+.+.++++|...+...+. |+.|..++. . .+++.++|..-.-+.+.+.+-.+|-=-|-|.
T Consensus 25 ~~q~~~L~~eL~~~~~~adw~tiGImA~s~~~-A-i~ALrs~~~~~~~~~~~d~~~~~G~VfLK~N 88 (131)
T d2q22a1 25 PSEKESVRRALILITKLSDYQILGICADTADE-G-LLAMKTYSHALGYEVPIDLPVVEGPVYIKLN 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEEEESSHHH-H-HHHHHHHHHHTTCCCC-CCCCCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCHHH-H-HHHHHHHHHHhCCCccCCCCCCCCcEEEEec
Confidence 45899999999999999996 999876653 3 3455556655545555555444553333333
No 6
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.94 E-value=44 Score=21.16 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCC
Q 029010 91 SPEDQARVDQIARKLEAVNDIKEP 114 (200)
Q Consensus 91 s~~~r~~I~elI~~LEalNPt~~P 114 (200)
.+.++.+|.+.++.|+. ||.+.|
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~~ 41 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPRE 41 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCHH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcCC
Confidence 56778888888888764 665544
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.85 E-value=34 Score=20.78 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 029010 89 EASPEDQARVDQIARKLE 106 (200)
Q Consensus 89 ~as~~~r~~I~elI~~LE 106 (200)
..+++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999998873
No 8
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=20.53 E-value=33 Score=26.35 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCcCCCC------CceEEEEE
Q 029010 86 RGAEASPEDQARVDQIARKLEAVN---DIKEPLKSNLL------NGKWELLY 128 (200)
Q Consensus 86 RG~~as~~~r~~I~elI~~LEalN---Pt~~P~~s~lL------~G~W~L~Y 128 (200)
|-...++++++++.+.|++|...+ |...|-.++.+ .|+||++-
T Consensus 39 ~~~~~~~~~~~~l~~~i~~ll~~G~I~p~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 39 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTSEEEECCSCBCCEEECCSSSSCCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhceeeecCCCcccccccccccccceEEEee
Confidence 345578889999999999888875 22233333221 47899986
No 9
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=20.49 E-value=35 Score=20.74 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 029010 89 EASPEDQARVDQIARKLE 106 (200)
Q Consensus 89 ~as~~~r~~I~elI~~LE 106 (200)
..+++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 479999999999999883
No 10
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=19.01 E-value=17 Score=24.03 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCce
Q 029010 95 QARVDQIARKLEAVNDIKEPLKSNLLNGK 123 (200)
Q Consensus 95 r~~I~elI~~LEalNPt~~P~~s~lL~G~ 123 (200)
.+.+.+.|..|-..+|-|.-...-.|.|+
T Consensus 24 ~~~~~~~i~~L~~~~pl~~~~~dH~L~G~ 52 (88)
T d1z8ma1 24 DSVLNEVILTLRKKEPLDPQFQDHALKGK 52 (88)
T ss_dssp HHHHHHHHHHHTTSCCCCGGGCCEECSGG
T ss_pred HHHHHHHHHHHHcCCCCCccccCccccCc
Confidence 46778888888766665544433334443
Done!