Query 029012
Match_columns 200
No_of_seqs 277 out of 1783
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:36:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.7 8.2E-17 2.8E-21 101.1 5.0 51 133-183 3-54 (55)
2 2kiz_A E3 ubiquitin-protein li 99.6 1.6E-16 5.5E-21 104.4 5.1 54 132-185 11-64 (69)
3 1x4j_A Ring finger protein 38; 99.6 7.2E-17 2.5E-21 107.9 3.2 53 132-184 20-72 (75)
4 2l0b_A E3 ubiquitin-protein li 99.6 1E-16 3.5E-21 111.3 3.5 53 132-184 37-89 (91)
5 3ng2_A RNF4, snurf, ring finge 99.6 4.3E-17 1.5E-21 107.6 1.1 61 132-196 7-71 (71)
6 2ect_A Ring finger protein 126 99.6 1.8E-16 6.2E-21 106.6 4.1 56 132-187 12-67 (78)
7 2djb_A Polycomb group ring fin 99.6 1.5E-16 5.3E-21 105.5 3.2 56 132-189 12-67 (72)
8 2ep4_A Ring finger protein 24; 99.6 3.2E-16 1.1E-20 104.3 4.4 53 132-184 12-64 (74)
9 2ecl_A Ring-box protein 2; RNF 99.6 5.4E-16 1.9E-20 105.4 4.3 52 134-185 14-77 (81)
10 2xeu_A Ring finger protein 4; 99.6 1.2E-16 4E-21 103.2 0.6 59 134-196 2-64 (64)
11 2ecm_A Ring finger and CHY zin 99.6 1.1E-15 3.8E-20 95.8 4.6 51 133-183 3-54 (55)
12 2d8t_A Dactylidin, ring finger 99.6 7E-16 2.4E-20 102.0 3.4 53 132-187 12-64 (71)
13 3dpl_R Ring-box protein 1; ubi 99.6 1.3E-15 4.4E-20 108.6 4.5 54 132-185 34-102 (106)
14 1chc_A Equine herpes virus-1 r 99.6 2E-15 6.8E-20 98.8 4.2 49 133-183 3-51 (68)
15 1v87_A Deltex protein 2; ring- 99.5 5.4E-15 1.8E-19 106.4 5.4 52 133-184 23-94 (114)
16 2ysl_A Tripartite motif-contai 99.5 3.7E-15 1.3E-19 98.8 4.1 52 132-186 17-71 (73)
17 2ea6_A Ring finger protein 4; 99.5 1.5E-15 5.1E-20 99.4 2.2 52 132-183 12-67 (69)
18 3lrq_A E3 ubiquitin-protein li 99.5 1.6E-15 5.5E-20 107.0 1.8 55 132-188 19-74 (100)
19 2yur_A Retinoblastoma-binding 99.5 6.8E-15 2.3E-19 98.1 4.1 51 132-185 12-65 (74)
20 2ecy_A TNF receptor-associated 99.5 5.3E-15 1.8E-19 96.3 3.5 51 133-186 13-64 (66)
21 4ayc_A E3 ubiquitin-protein li 99.5 6.9E-15 2.3E-19 109.6 4.3 49 133-184 51-99 (138)
22 2csy_A Zinc finger protein 183 99.5 9.4E-15 3.2E-19 98.9 4.5 49 132-183 12-60 (81)
23 2ecn_A Ring finger protein 141 99.5 4.6E-15 1.6E-19 97.7 2.5 50 132-185 12-61 (70)
24 2y43_A E3 ubiquitin-protein li 99.5 5.3E-15 1.8E-19 103.9 2.5 52 133-186 20-71 (99)
25 1t1h_A Gspef-atpub14, armadill 99.5 6.3E-15 2.2E-19 99.0 2.8 52 132-186 5-57 (78)
26 2egp_A Tripartite motif-contai 99.5 4.3E-15 1.5E-19 99.9 1.5 55 132-189 9-70 (79)
27 2ct2_A Tripartite motif protei 99.5 1.1E-14 3.9E-19 99.7 3.5 55 132-186 12-70 (88)
28 4a0k_B E3 ubiquitin-protein li 99.5 2.4E-15 8.3E-20 108.8 0.1 67 119-185 29-113 (117)
29 2ckl_A Polycomb group ring fin 99.5 1.6E-14 5.6E-19 103.0 3.9 52 132-185 12-63 (108)
30 2d8s_A Cellular modulator of i 99.5 1.8E-14 6.2E-19 97.5 3.5 54 131-185 11-71 (80)
31 2ysj_A Tripartite motif-contai 99.5 5.7E-14 2E-18 90.5 5.4 45 131-178 16-63 (63)
32 2ecw_A Tripartite motif-contai 99.5 1.9E-14 6.5E-19 97.7 3.2 53 132-187 16-74 (85)
33 3ztg_A E3 ubiquitin-protein li 99.5 6E-14 2.1E-18 97.1 5.2 49 131-182 9-60 (92)
34 1g25_A CDK-activating kinase a 99.5 1.8E-14 6E-19 93.5 2.1 53 134-186 2-57 (65)
35 2ecv_A Tripartite motif-contai 99.4 3.1E-14 1E-18 96.7 2.7 53 132-187 16-74 (85)
36 4ap4_A E3 ubiquitin ligase RNF 99.4 2.3E-14 7.9E-19 105.1 1.3 54 133-186 5-62 (133)
37 4ap4_A E3 ubiquitin ligase RNF 99.4 8.2E-14 2.8E-18 102.1 3.3 62 131-196 68-133 (133)
38 3fl2_A E3 ubiquitin-protein li 99.4 9E-14 3.1E-18 101.5 3.1 49 133-184 50-99 (124)
39 2ecj_A Tripartite motif-contai 99.4 2.1E-13 7E-18 86.2 4.2 44 132-178 12-58 (58)
40 2kr4_A Ubiquitin conjugation f 99.4 1.7E-13 5.7E-18 93.8 3.6 52 133-187 12-63 (85)
41 3l11_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 99.7 2.1 49 133-184 13-62 (115)
42 2ckl_B Ubiquitin ligase protei 99.4 1.8E-13 6E-18 104.8 3.2 49 133-183 52-101 (165)
43 1jm7_A BRCA1, breast cancer ty 99.4 1.1E-13 3.7E-18 99.0 1.7 52 133-187 19-73 (112)
44 3hct_A TNF receptor-associated 99.4 2.8E-13 9.6E-18 98.1 3.3 52 132-186 15-67 (118)
45 1wgm_A Ubiquitin conjugation f 99.3 3.5E-13 1.2E-17 94.7 3.3 52 133-187 20-72 (98)
46 2kre_A Ubiquitin conjugation f 99.3 3.8E-13 1.3E-17 94.8 3.5 53 132-187 26-78 (100)
47 1z6u_A NP95-like ring finger p 99.3 3.7E-13 1.3E-17 101.7 3.2 50 133-185 76-126 (150)
48 1e4u_A Transcriptional repress 99.3 7.7E-13 2.6E-17 89.1 4.1 55 132-187 8-65 (78)
49 1rmd_A RAG1; V(D)J recombinati 99.3 4E-13 1.4E-17 96.9 2.9 52 133-187 21-73 (116)
50 2ct0_A Non-SMC element 1 homol 99.3 1.7E-12 5.7E-17 86.3 5.1 51 133-185 13-65 (74)
51 1bor_A Transcription factor PM 99.3 2.6E-13 9E-18 85.5 0.7 48 132-185 3-50 (56)
52 2vje_A E3 ubiquitin-protein li 99.3 7.1E-13 2.4E-17 85.9 2.1 48 133-183 6-56 (64)
53 1jm7_B BARD1, BRCA1-associated 99.3 3.1E-13 1.1E-17 97.7 0.4 50 133-186 20-69 (117)
54 3knv_A TNF receptor-associated 99.3 1.1E-12 3.7E-17 98.1 2.4 49 132-183 28-77 (141)
55 4ic3_A E3 ubiquitin-protein li 99.2 7.8E-13 2.7E-17 88.1 0.6 46 133-185 22-68 (74)
56 2vje_B MDM4 protein; proto-onc 99.2 1.9E-12 6.6E-17 83.5 2.0 49 133-183 5-55 (63)
57 2yu4_A E3 SUMO-protein ligase 99.2 2.8E-12 9.5E-17 89.3 2.4 52 132-186 4-65 (94)
58 3hcs_A TNF receptor-associated 99.2 1.4E-11 4.6E-16 94.6 3.3 53 131-186 14-67 (170)
59 2y1n_A E3 ubiquitin-protein li 99.1 2.1E-11 7.3E-16 104.4 4.8 49 134-185 331-380 (389)
60 2c2l_A CHIP, carboxy terminus 99.1 1.2E-11 4E-16 101.4 2.9 53 132-187 205-258 (281)
61 2ecg_A Baculoviral IAP repeat- 99.1 9.5E-12 3.3E-16 82.9 1.2 44 134-184 24-68 (75)
62 3htk_C E3 SUMO-protein ligase 99.1 4.4E-11 1.5E-15 97.1 3.0 56 131-188 177-236 (267)
63 2f42_A STIP1 homology and U-bo 99.1 5E-11 1.7E-15 92.2 3.0 54 132-188 103-157 (179)
64 2yho_A E3 ubiquitin-protein li 99.0 4.6E-11 1.6E-15 80.5 0.1 45 134-185 17-62 (79)
65 2bay_A PRE-mRNA splicing facto 99.0 2.2E-10 7.6E-15 73.3 2.8 51 135-187 3-53 (61)
66 2ea5_A Cell growth regulator w 99.0 4.7E-10 1.6E-14 73.3 3.9 45 133-184 13-58 (68)
67 1wim_A KIAA0161 protein; ring 98.9 3.6E-10 1.2E-14 78.4 3.3 56 133-188 3-70 (94)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.9 5.3E-10 1.8E-14 71.3 3.4 49 133-184 4-59 (60)
69 3k1l_B Fancl; UBC, ring, RWD, 98.9 2.8E-10 9.6E-15 95.4 2.4 54 132-185 305-374 (381)
70 3t6p_A Baculoviral IAP repeat- 98.8 4.1E-10 1.4E-14 95.6 0.9 46 133-185 293-339 (345)
71 3vk6_A E3 ubiquitin-protein li 98.5 9.2E-08 3.2E-12 66.2 3.5 45 137-183 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 2.8E-06 9.5E-11 68.4 4.5 50 134-185 179-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.00087 3E-08 46.2 3.4 34 134-169 2-38 (101)
74 2ko5_A Ring finger protein Z; 96.7 0.00052 1.8E-08 46.6 1.7 48 133-185 26-74 (99)
75 2lri_C Autoimmune regulator; Z 94.8 0.03 1E-06 35.6 3.7 47 133-182 10-60 (66)
76 3m62_A Ubiquitin conjugation f 92.8 0.081 2.8E-06 50.0 4.2 52 132-186 888-940 (968)
77 1wil_A KIAA1045 protein; ring 92.7 0.14 4.9E-06 34.0 4.1 35 133-168 13-47 (89)
78 2ysm_A Myeloid/lymphoid or mix 92.5 0.061 2.1E-06 37.6 2.3 39 132-170 4-42 (111)
79 2k16_A Transcription initiatio 91.8 0.05 1.7E-06 35.3 1.0 51 133-183 16-70 (75)
80 1we9_A PHD finger family prote 91.3 0.048 1.6E-06 34.2 0.5 50 132-181 3-58 (64)
81 1f62_A Transcription factor WS 91.1 0.2 6.8E-06 29.7 3.2 44 137-180 2-49 (51)
82 2l5u_A Chromodomain-helicase-D 90.5 0.17 6E-06 31.4 2.6 46 132-180 8-57 (61)
83 1mm2_A MI2-beta; PHD, zinc fin 90.4 0.083 2.8E-06 32.9 1.0 49 132-183 6-58 (61)
84 3i2d_A E3 SUMO-protein ligase 90.2 0.18 6.2E-06 42.7 3.2 52 134-187 248-303 (371)
85 4fo9_A E3 SUMO-protein ligase 89.8 0.22 7.5E-06 42.0 3.4 52 134-187 214-269 (360)
86 3o36_A Transcription intermedi 89.7 0.12 4E-06 39.4 1.6 47 133-182 2-52 (184)
87 2yql_A PHD finger protein 21A; 88.2 0.091 3.1E-06 32.0 -0.0 46 132-180 6-55 (56)
88 3u5n_A E3 ubiquitin-protein li 87.4 0.13 4.4E-06 40.0 0.4 48 132-182 4-55 (207)
89 2puy_A PHD finger protein 21A; 87.3 0.11 3.8E-06 32.1 -0.1 48 133-183 3-54 (60)
90 1xwh_A Autoimmune regulator; P 87.1 0.13 4.5E-06 32.5 0.2 46 133-181 6-55 (66)
91 2lbm_A Transcriptional regulat 86.3 0.82 2.8E-05 33.4 4.2 47 132-181 60-117 (142)
92 3lqh_A Histone-lysine N-methyl 86.1 0.33 1.1E-05 37.1 2.0 49 135-183 2-65 (183)
93 1z60_A TFIIH basal transcripti 84.7 0.43 1.5E-05 29.5 1.7 43 136-178 16-58 (59)
94 1fp0_A KAP-1 corepressor; PHD 84.3 0.51 1.8E-05 31.6 2.1 47 132-181 22-72 (88)
95 2ku3_A Bromodomain-containing 84.2 0.34 1.2E-05 31.1 1.1 50 131-180 12-65 (71)
96 2l43_A N-teminal domain from h 84.1 0.17 5.9E-06 33.9 -0.3 54 132-185 22-79 (88)
97 3v43_A Histone acetyltransfera 82.9 2.6 9E-05 29.1 5.5 33 134-166 4-42 (112)
98 2lv9_A Histone-lysine N-methyl 82.3 0.97 3.3E-05 30.7 2.9 48 133-181 26-76 (98)
99 2e6r_A Jumonji/ARID domain-con 82.2 0.16 5.6E-06 34.3 -1.1 49 133-181 14-66 (92)
100 1wep_A PHF8; structural genomi 81.3 0.97 3.3E-05 29.4 2.5 49 133-182 10-64 (79)
101 1weu_A Inhibitor of growth fam 79.8 1.1 3.9E-05 30.1 2.5 47 133-183 34-87 (91)
102 2vpb_A Hpygo1, pygopus homolog 79.6 1.8 6E-05 27.1 3.2 35 132-166 5-41 (65)
103 1wem_A Death associated transc 79.1 0.61 2.1E-05 30.1 0.9 47 134-181 15-70 (76)
104 3o70_A PHD finger protein 13; 78.8 0.51 1.7E-05 30.0 0.5 49 131-180 15-66 (68)
105 1wen_A Inhibitor of growth fam 78.0 1.2 4E-05 28.5 2.0 47 133-183 14-67 (71)
106 2yt5_A Metal-response element- 77.5 0.96 3.3E-05 28.1 1.5 51 132-182 3-62 (66)
107 2cs3_A Protein C14ORF4, MY039 77.3 6.5 0.00022 25.8 5.4 38 133-171 13-52 (93)
108 2ro1_A Transcription intermedi 76.4 0.78 2.7E-05 35.0 1.0 44 135-181 2-49 (189)
109 3ql9_A Transcriptional regulat 76.4 2.6 8.9E-05 30.2 3.7 48 131-181 53-111 (129)
110 3v43_A Histone acetyltransfera 76.1 1.2 4.2E-05 30.9 1.9 44 137-180 63-111 (112)
111 1wew_A DNA-binding family prot 75.0 0.94 3.2E-05 29.4 1.0 49 133-182 14-73 (78)
112 1weo_A Cellulose synthase, cat 74.0 6.1 0.00021 26.4 4.7 50 134-183 15-69 (93)
113 2e6s_A E3 ubiquitin-protein li 73.1 0.99 3.4E-05 29.3 0.7 45 136-180 27-76 (77)
114 4gne_A Histone-lysine N-methyl 72.3 2.5 8.5E-05 29.3 2.7 44 131-180 11-61 (107)
115 2kgg_A Histone demethylase jar 71.4 1.8 6.2E-05 25.6 1.6 43 137-179 4-52 (52)
116 3asl_A E3 ubiquitin-protein li 70.0 0.94 3.2E-05 28.8 0.1 44 137-180 20-68 (70)
117 3shb_A E3 ubiquitin-protein li 68.3 0.92 3.1E-05 29.5 -0.3 44 137-180 28-76 (77)
118 3t7l_A Zinc finger FYVE domain 68.2 4.5 0.00015 26.9 3.2 50 133-182 18-74 (90)
119 2o35_A Hypothetical protein DU 67.8 1.9 6.6E-05 29.4 1.2 12 159-170 42-53 (105)
120 1z2q_A LM5-1; membrane protein 67.5 4.9 0.00017 26.2 3.2 36 133-168 19-55 (84)
121 3fyb_A Protein of unknown func 67.4 2 6.8E-05 29.2 1.2 12 159-170 41-52 (104)
122 1wfk_A Zinc finger, FYVE domai 66.5 4.2 0.00014 26.9 2.7 51 132-182 6-64 (88)
123 1y02_A CARP2, FYVE-ring finger 66.0 0.87 3E-05 32.3 -0.8 48 133-180 17-65 (120)
124 1joc_A EEA1, early endosomal a 65.4 5 0.00017 28.4 3.2 36 133-168 67-103 (125)
125 2yw8_A RUN and FYVE domain-con 65.1 5 0.00017 26.1 2.9 37 133-169 17-54 (82)
126 1x4u_A Zinc finger, FYVE domai 64.5 5.5 0.00019 26.0 3.0 36 133-168 12-48 (84)
127 2ri7_A Nucleosome-remodeling f 64.4 1.3 4.4E-05 33.1 -0.2 48 133-181 6-59 (174)
128 2vnf_A ING 4, P29ING4, inhibit 64.1 1.2 4.2E-05 27.3 -0.3 43 134-180 9-58 (60)
129 2kwj_A Zinc finger protein DPF 64.1 5.8 0.0002 27.5 3.2 33 136-168 2-41 (114)
130 3c6w_A P28ING5, inhibitor of g 63.0 1.4 4.7E-05 27.1 -0.2 44 133-180 7-57 (59)
131 3vhs_A ATPase wrnip1; zinc fin 62.6 4.6 0.00016 20.4 1.7 17 173-189 7-23 (29)
132 1zbd_B Rabphilin-3A; G protein 62.3 4.3 0.00015 29.2 2.3 49 133-181 53-107 (134)
133 2zet_C Melanophilin; complex, 62.1 5.6 0.00019 29.3 3.0 48 133-181 66-117 (153)
134 1vfy_A Phosphatidylinositol-3- 61.7 6.6 0.00022 24.9 2.9 33 136-168 12-45 (73)
135 1wee_A PHD finger family prote 61.6 1 3.5E-05 28.7 -1.1 48 133-181 14-66 (72)
136 2ysm_A Myeloid/lymphoid or mix 61.5 1.5 5.2E-05 30.2 -0.2 44 137-180 56-103 (111)
137 3a1b_A DNA (cytosine-5)-methyl 61.3 7.6 0.00026 28.8 3.5 48 130-180 74-133 (159)
138 2xb1_A Pygopus homolog 2, B-ce 61.3 5.8 0.0002 27.1 2.8 49 135-183 3-63 (105)
139 3ask_A E3 ubiquitin-protein li 60.8 3.7 0.00013 32.2 1.9 46 135-180 174-224 (226)
140 2rsd_A E3 SUMO-protein ligase 59.7 0.95 3.2E-05 28.5 -1.5 46 133-180 8-64 (68)
141 1wd2_A Ariadne-1 protein homol 59.3 2.1 7.1E-05 26.4 0.1 38 135-172 6-48 (60)
142 2pv0_B DNA (cytosine-5)-methyl 58.1 9.8 0.00034 32.3 4.1 49 130-181 88-148 (386)
143 3mjh_B Early endosome antigen 57.4 2 6.7E-05 23.4 -0.2 10 174-183 7-16 (34)
144 2jne_A Hypothetical protein YF 57.4 0.59 2E-05 31.8 -2.8 41 135-183 32-72 (101)
145 2jmi_A Protein YNG1, ING1 homo 57.1 2.1 7.2E-05 28.7 -0.1 45 132-180 23-75 (90)
146 2jmo_A Parkin; IBR, E3 ligase, 57.1 1.1 3.7E-05 29.3 -1.6 20 155-176 55-74 (80)
147 2d8v_A Zinc finger FYVE domain 55.9 10 0.00035 23.8 2.9 34 132-169 5-39 (67)
148 2ct7_A Ring finger protein 31; 55.2 2.3 7.9E-05 28.0 -0.2 41 138-178 28-73 (86)
149 3zyq_A Hepatocyte growth facto 54.0 7.1 0.00024 30.4 2.5 35 134-168 163-198 (226)
150 1dvp_A HRS, hepatocyte growth 53.8 7.5 0.00026 30.0 2.6 34 135-168 161-195 (220)
151 2kwj_A Zinc finger protein DPF 52.4 1.7 5.9E-05 30.2 -1.2 46 137-182 60-109 (114)
152 1wev_A Riken cDNA 1110020M19; 51.5 4.6 0.00016 26.7 0.8 51 133-183 14-74 (88)
153 2a20_A Regulating synaptic mem 50.2 2 6.8E-05 26.4 -1.0 49 132-180 6-59 (62)
154 1m3v_A FLIN4, fusion of the LI 48.1 10 0.00036 26.2 2.4 51 135-186 32-83 (122)
155 3o7a_A PHD finger protein 13 v 48.1 3.5 0.00012 24.3 -0.2 44 136-180 5-51 (52)
156 2dj7_A Actin-binding LIM prote 48.1 14 0.00049 23.4 2.9 40 134-183 14-53 (80)
157 1x4l_A Skeletal muscle LIM-pro 47.8 16 0.00053 22.4 3.0 40 135-183 5-46 (72)
158 1wyh_A SLIM 2, skeletal muscle 47.1 15 0.00051 22.4 2.8 41 135-184 5-45 (72)
159 2jrp_A Putative cytoplasmic pr 47.0 1.8 6.1E-05 28.5 -1.7 40 136-183 3-42 (81)
160 1x62_A C-terminal LIM domain p 46.9 15 0.00052 23.1 2.8 39 134-183 14-52 (79)
161 2jvx_A NF-kappa-B essential mo 46.9 4.3 0.00015 21.0 0.1 14 172-185 3-16 (28)
162 1x4i_A Inhibitor of growth pro 46.4 6.7 0.00023 24.8 1.0 49 133-183 4-57 (70)
163 2dar_A PDZ and LIM domain prot 46.0 13 0.00046 24.0 2.5 41 133-184 23-63 (90)
164 2xjy_A Rhombotin-2; oncoprotei 45.2 17 0.00057 25.2 3.1 49 135-184 29-78 (131)
165 1iml_A CRIP, cysteine rich int 43.2 6.6 0.00022 24.6 0.6 44 134-181 26-70 (76)
166 1x63_A Skeletal muscle LIM-pro 42.8 15 0.00051 23.1 2.3 41 135-184 15-55 (82)
167 1x4k_A Skeletal muscle LIM-pro 42.5 12 0.00041 22.9 1.8 40 136-184 6-45 (72)
168 1g47_A Pinch protein; LIM doma 40.1 26 0.00089 21.6 3.2 43 134-185 10-52 (77)
169 2gmg_A Hypothetical protein PF 39.2 7.6 0.00026 26.7 0.4 29 151-184 68-96 (105)
170 2l4z_A DNA endonuclease RBBP8, 38.2 24 0.00083 24.4 3.0 40 134-183 60-99 (123)
171 1x64_A Alpha-actinin-2 associa 37.6 23 0.0008 22.7 2.7 40 134-184 24-63 (89)
172 2cu8_A Cysteine-rich protein 2 37.1 12 0.00042 23.2 1.2 40 135-184 9-48 (76)
173 1zfo_A LAsp-1; LIM domain, zin 36.8 18 0.0006 18.7 1.6 27 136-164 4-30 (31)
174 2d8x_A Protein pinch; LIM doma 36.1 17 0.00059 22.0 1.7 39 135-184 5-43 (70)
175 3mpx_A FYVE, rhogef and PH dom 35.7 7.7 0.00026 32.8 0.0 50 133-182 373-430 (434)
176 1x68_A FHL5 protein; four-and- 34.9 20 0.00067 22.3 1.9 40 135-183 5-46 (76)
177 2cor_A Pinch protein; LIM doma 34.7 26 0.0009 22.0 2.5 40 134-184 14-53 (79)
178 2l3k_A Rhombotin-2, linker, LI 34.1 28 0.00096 23.9 2.8 33 136-169 37-69 (123)
179 3kv5_D JMJC domain-containing 33.8 7.9 0.00027 33.9 -0.3 48 133-181 35-88 (488)
180 6rxn_A Rubredoxin; electron tr 33.7 9.2 0.00032 22.1 0.1 15 167-181 23-39 (46)
181 2co8_A NEDD9 interacting prote 33.7 21 0.00071 22.7 1.9 42 134-185 14-55 (82)
182 2g6q_A Inhibitor of growth pro 33.5 7.1 0.00024 24.0 -0.4 43 134-180 10-59 (62)
183 3f6q_B LIM and senescent cell 33.4 18 0.00062 21.8 1.5 43 134-185 10-52 (72)
184 2xqn_T Testin, TESS; metal-bin 32.6 39 0.0013 23.1 3.3 46 135-184 30-75 (126)
185 2csz_A Synaptotagmin-like prot 32.1 42 0.0014 21.6 3.0 34 132-165 22-57 (76)
186 1rut_X Flinc4, fusion protein 30.0 18 0.00061 27.0 1.2 27 157-183 54-80 (188)
187 2cup_A Skeletal muscle LIM-pro 29.5 41 0.0014 21.9 2.9 48 134-185 32-79 (101)
188 1wig_A KIAA1808 protein; LIM d 29.5 36 0.0012 20.9 2.5 37 136-183 6-42 (73)
189 2d8y_A Eplin protein; LIM doma 29.3 30 0.001 22.2 2.2 27 136-164 16-42 (91)
190 2ehe_A Four and A half LIM dom 27.9 31 0.0011 21.5 2.0 40 136-184 16-55 (82)
191 3kqi_A GRC5, PHD finger protei 26.6 18 0.00061 22.9 0.6 47 134-181 9-61 (75)
192 2pk7_A Uncharacterized protein 26.5 16 0.00054 23.0 0.3 16 168-183 4-19 (69)
193 1v6g_A Actin binding LIM prote 26.2 24 0.00083 22.1 1.2 37 136-183 16-52 (81)
194 1a7i_A QCRP2 (LIM1); LIM domai 25.8 14 0.00049 23.2 -0.0 38 136-183 8-45 (81)
195 1x61_A Thyroid receptor intera 25.4 92 0.0032 18.6 3.9 9 137-145 7-15 (72)
196 2dlo_A Thyroid receptor-intera 24.6 27 0.00092 21.9 1.2 38 135-183 15-52 (81)
197 2cuq_A Four and A half LIM dom 24.1 40 0.0014 20.9 1.9 37 136-183 16-52 (80)
198 2egq_A FHL1 protein; LIM domai 23.3 31 0.0011 21.2 1.3 41 135-184 15-58 (77)
199 2jny_A Uncharacterized BCR; st 23.2 15 0.00053 23.0 -0.2 18 167-184 5-22 (67)
200 2lcq_A Putative toxin VAPC6; P 22.8 30 0.001 25.1 1.3 26 152-183 134-159 (165)
201 1j2o_A FLIN2, fusion of rhombo 22.7 52 0.0018 22.1 2.4 39 134-173 29-68 (114)
202 1l8d_A DNA double-strand break 21.8 38 0.0013 22.8 1.5 11 174-184 49-59 (112)
203 2kpi_A Uncharacterized protein 20.1 12 0.0004 22.6 -1.2 10 174-183 12-21 (56)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=8.2e-17 Score=101.13 Aligned_cols=51 Identities=25% Similarity=0.754 Sum_probs=44.7
Q ss_pred cCCCcccccccccCCCCCeeecC-CCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
+++..|+||++.|..++....++ |||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 56788999999996655556776 9999999999999999999999999874
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=104.41 Aligned_cols=54 Identities=30% Similarity=0.654 Sum_probs=47.5
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
.+.+..|+||++.|...+.++.++|||.||..||.+|++.+.+||+||+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 456778999999996666778999999999999999999999999999988643
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-17 Score=107.93 Aligned_cols=53 Identities=25% Similarity=0.741 Sum_probs=47.2
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
..++..|+||++.|...+.++.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45678899999999766667889999999999999999999999999998864
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=111.27 Aligned_cols=53 Identities=32% Similarity=0.740 Sum_probs=47.0
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
.+++..|+||++.|..++.++.++|||.||..||..|++.+.+||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 35677899999999766667889999999999999999999999999998764
No 5
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.62 E-value=4.3e-17 Score=107.60 Aligned_cols=61 Identities=21% Similarity=0.570 Sum_probs=50.1
Q ss_pred ccCCCcccccccccCC----CCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhHHhhhhhhhh
Q 029012 132 SEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLLVCAISRCFF 196 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~~~~~~~~~~ 196 (200)
.+++..|+||++.+.. ++..+.++|||.||..||.+|++.+.+||+||+.+..+ ++.++||
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~----~~~~~~l 71 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK----RYHPIYI 71 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC----SCCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh----heeeccC
Confidence 3567889999999932 23447999999999999999999999999999999877 4555553
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.8e-16 Score=106.64 Aligned_cols=56 Identities=34% Similarity=0.720 Sum_probs=48.9
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLL 187 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~ 187 (200)
..++..|+||++.|.....++.++|||.||..||.+|++.+.+||+||+.+....+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 35678899999999666666789999999999999999999999999999987643
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=105.53 Aligned_cols=56 Identities=29% Similarity=0.458 Sum_probs=48.4
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhHHh
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLLVC 189 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~~~ 189 (200)
.++...|+||++.+ .+++.+++|||.||..||.+|++.+.+||+||+.+..+++..
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 12 LTPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred cCCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 35678899999999 678666699999999999999999999999999998775443
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=104.35 Aligned_cols=53 Identities=30% Similarity=0.841 Sum_probs=46.5
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
..++..|+||++.|.....++.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34577899999999766667788999999999999999999999999998863
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=105.37 Aligned_cols=52 Identities=35% Similarity=0.795 Sum_probs=42.3
Q ss_pred CCCcccccccccCC-----------CC-CeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 134 EEDTCPICLEEYDT-----------EN-PKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~-----------~~-~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
+++.|+||++.|.. ++ .+++++|||.||..||.+|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 56678888888832 22 445556999999999999999999999999998765
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.59 E-value=1.2e-16 Score=103.22 Aligned_cols=59 Identities=22% Similarity=0.580 Sum_probs=48.4
Q ss_pred CCCcccccccccCC----CCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhHHhhhhhhhh
Q 029012 134 EEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLLVCAISRCFF 196 (200)
Q Consensus 134 ~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~~~~~~~~~~ 196 (200)
++..|+||++.+.. .+.++.++|||.||..||.+|++.+.+||+||+.+..+ ++.++||
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~----~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK----RYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT----CEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc----ceeeeeC
Confidence 46789999999932 23347899999999999999999999999999999876 4555553
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.58 E-value=1.1e-15 Score=95.82 Aligned_cols=51 Identities=29% Similarity=0.649 Sum_probs=44.1
Q ss_pred cCCCcccccccccCC-CCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
..+..|+||++.|.. .+..+.++|||.||..||.+|++...+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456789999999943 345689999999999999999999999999999874
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7e-16 Score=102.03 Aligned_cols=53 Identities=26% Similarity=0.538 Sum_probs=46.6
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLL 187 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~ 187 (200)
..++..|+||++.+ .++ +.++|||.||..||.+|+....+||+||+.+..+.+
T Consensus 12 ~~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSCCBCSSSSSBC--SSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCCccCCccc--CCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 35677899999999 677 578999999999999999999999999999987644
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.57 E-value=1.3e-15 Score=108.62 Aligned_cols=54 Identities=26% Similarity=0.557 Sum_probs=45.2
Q ss_pred ccCCCcccccccccCCC---------------CCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 132 SEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~---------------~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
..+++.|+||++.|... .+++.++|+|.||..||.+||..+.+||+||+.+...
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 34678899999999532 1367899999999999999999999999999987643
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.56 E-value=2e-15 Score=98.79 Aligned_cols=49 Identities=33% Similarity=0.813 Sum_probs=44.5
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
+++..|+||++.+ .++.+.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4567899999999 677789999999999999999999999999999876
No 15
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.54 E-value=5.4e-15 Score=106.39 Aligned_cols=52 Identities=35% Similarity=0.740 Sum_probs=41.7
Q ss_pred cCCCcccccccccCCCC---------------CeeecCCCCeeCHhhHHHHh-----ccCCCCccccccccc
Q 029012 133 EEEDTCPICLEEYDTEN---------------PKLITKCEHHFHLSCILEWN-----ERSESCPICDQVCLL 184 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~---------------~~~~l~C~H~Fh~~CI~~Wl-----~~~~tCP~CR~~l~~ 184 (200)
..++.|+||++.|.... .+.+++|+|.||..||..|+ ..+.+||+||+.+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34568999999994321 23488999999999999999 457799999998764
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.7e-15 Score=98.78 Aligned_cols=52 Identities=35% Similarity=0.765 Sum_probs=44.4
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhc---cCCCCccccccccchh
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPICDQVCLLQL 186 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~~~tCP~CR~~l~~~~ 186 (200)
.++...|+||++.+ .++ +.++|||.||..||.+|++ ....||+||+.+..++
T Consensus 17 ~~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBC--SSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCccc--CCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 45678899999999 677 5779999999999999997 4559999999987664
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-15 Score=99.39 Aligned_cols=52 Identities=25% Similarity=0.654 Sum_probs=44.1
Q ss_pred ccCCCcccccccccCC----CCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 132 SEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
..+...|+||++.|.. ...+++++|||.||..||.+|++.+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3567889999999932 233478999999999999999999999999999875
No 18
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.53 E-value=1.6e-15 Score=107.00 Aligned_cols=55 Identities=31% Similarity=0.645 Sum_probs=47.4
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC-CCCccccccccchhHH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQVCLLQLLV 188 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~l~~~~~~ 188 (200)
.+++..|+||++.| .+|+..++|||.||..||.+|+..+ .+||+||+.+..+++.
T Consensus 19 l~~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 19 IAEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHHHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 34678899999999 6886449999999999999999988 6999999999876543
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.52 E-value=6.8e-15 Score=98.08 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=43.6
Q ss_pred ccCCCcccccccccCCCCCeeecC-CCCeeCHhhHHHHhccC--CCCccccccccch
Q 029012 132 SEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~~--~tCP~CR~~l~~~ 185 (200)
..++..|+||++.| .+|+ .++ |||.||..||.+|++.+ .+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~--~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIM--TDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCC--TTCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHH--hCCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 35678899999999 6884 688 99999999999999876 6999999986543
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.3e-15 Score=96.32 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=44.1
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhc-cCCCCccccccccchh
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQVCLLQL 186 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~l~~~~ 186 (200)
.+...|+||++.+ .+++ .++|||.||..||.+|+. ...+||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~--~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVL--CSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEE--SSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHh--cCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4678899999999 6784 689999999999999995 5669999999987664
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.51 E-value=6.9e-15 Score=109.58 Aligned_cols=49 Identities=37% Similarity=0.747 Sum_probs=44.2
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
+++..|+||++.| .+| ++++|||.||..||..|+..+.+||+||+.+..
T Consensus 51 ~~~~~C~iC~~~~--~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYF--IEA-VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBC--SSE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCccc--CCc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4567899999999 677 588999999999999999999999999999864
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.4e-15 Score=98.94 Aligned_cols=49 Identities=41% Similarity=0.733 Sum_probs=44.0
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
.++...|+||++.| .++ ++++|||.||..||.+|++...+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchh--cCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34577899999999 678 57999999999999999999999999999975
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-15 Score=97.65 Aligned_cols=50 Identities=34% Similarity=0.826 Sum_probs=44.2
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
..+...|+||++.+ .+ +.++|||.||..||.+|+..+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~--~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGR--AD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSC--CS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCc--cC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 34678899999999 34 6899999999999999999999999999998754
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.50 E-value=5.3e-15 Score=103.93 Aligned_cols=52 Identities=23% Similarity=0.554 Sum_probs=45.7
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchh
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQL 186 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~ 186 (200)
++...|+||++.| .+++.+++|||.||..||.+|+..+.+||+||+.+...+
T Consensus 20 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 20 DDLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 4567899999999 678655699999999999999999999999999988654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.50 E-value=6.3e-15 Score=99.00 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=45.4
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-CCCCccccccccchh
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVCLLQL 186 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~l~~~~ 186 (200)
..++..|+||++.+ .+| ++++|||.||+.||.+|+.. +.+||+||+.+..+.
T Consensus 5 ~~~~~~C~IC~~~~--~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELM--KDP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCC--SSE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccc--cCC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 35678899999999 788 57799999999999999987 779999999987554
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.49 E-value=4.3e-15 Score=99.89 Aligned_cols=55 Identities=38% Similarity=0.744 Sum_probs=46.7
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-------CCCCccccccccchhHHh
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-------SESCPICDQVCLLQLLVC 189 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-------~~tCP~CR~~l~~~~~~~ 189 (200)
.+++..|+||++.| .++ +.++|||.||..||.+|+.. ...||+||+.+..+++..
T Consensus 9 ~~~~~~C~IC~~~~--~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 9 VQEEVTCPICLELL--TEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCCEETTTTEEC--SSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred cccCCCCcCCCccc--CCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 35678899999999 678 46899999999999999987 569999999998765443
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=99.71 Aligned_cols=55 Identities=25% Similarity=0.614 Sum_probs=45.5
Q ss_pred ccCCCcccccccccCCCCC-eeecCCCCeeCHhhHHHHhccC---CCCccccccccchh
Q 029012 132 SEEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNERS---ESCPICDQVCLLQL 186 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl~~~---~tCP~CR~~l~~~~ 186 (200)
.++...|+||++.|...+. .+.++|||.||..||.+|++.+ .+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4567889999999943331 3688999999999999999986 79999999987664
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.49 E-value=2.4e-15 Score=108.81 Aligned_cols=67 Identities=27% Similarity=0.516 Sum_probs=7.3
Q ss_pred cchhhhccccc---ccccCCCcccccccccCCC---------------CCeeecCCCCeeCHhhHHHHhccCCCCccccc
Q 029012 119 RKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (200)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~C~ICle~~~~~---------------~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~ 180 (200)
++.++++.... .-..+++.|+||++.|... .+++.++|+|.||..||.+||+.+.+||+||+
T Consensus 29 ~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 108 (117)
T 4a0k_B 29 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 108 (117)
T ss_dssp CSEEEEEEEEEEEEEECCCC------------------------------------------------------------
T ss_pred CceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCC
Confidence 34444444333 3334678899999999431 13455799999999999999999999999999
Q ss_pred cccch
Q 029012 181 VCLLQ 185 (200)
Q Consensus 181 ~l~~~ 185 (200)
.+...
T Consensus 109 ~~~~~ 113 (117)
T 4a0k_B 109 EWEFQ 113 (117)
T ss_dssp -----
T ss_pred eeeee
Confidence 87654
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.48 E-value=1.6e-14 Score=103.02 Aligned_cols=52 Identities=29% Similarity=0.604 Sum_probs=45.9
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
..++..|+||++.+ .+|+.+++|||.||..||..|+..+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 35678899999999 68865569999999999999999999999999998754
No 30
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=97.55 Aligned_cols=54 Identities=33% Similarity=0.818 Sum_probs=46.2
Q ss_pred cccCCCcccccccccCCCCCeeecCCC-----CeeCHhhHHHHhccCC--CCccccccccch
Q 029012 131 ASEEEDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERSE--SCPICDQVCLLQ 185 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l~C~-----H~Fh~~CI~~Wl~~~~--tCP~CR~~l~~~ 185 (200)
...++..|.||+++|+.++++ ++||. |.||..||.+||..+. +||+||+.+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345677899999999777785 78996 9999999999998764 999999998765
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.7e-14 Score=90.47 Aligned_cols=45 Identities=40% Similarity=0.920 Sum_probs=38.8
Q ss_pred cccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhc---cCCCCccc
Q 029012 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~~~tCP~C 178 (200)
..+++..|+||++.+ .++ +.++|||.||..||.+|++ ...+||+|
T Consensus 16 ~~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDIL--QKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBC--SSC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchh--CCe-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678899999999 678 5679999999999999998 45599998
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.9e-14 Score=97.70 Aligned_cols=53 Identities=38% Similarity=0.745 Sum_probs=45.9
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc------CCCCccccccccchhH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQVCLLQLL 187 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~------~~tCP~CR~~l~~~~~ 187 (200)
..+...|+||++.| .++ ++++|||.||..||..|+.. ...||+||+.+..+.+
T Consensus 16 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELL--KEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCC--SSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CccCCCCcCCChhh--Ccc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 34678899999999 678 47899999999999999988 6699999999987643
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=97.07 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=42.5
Q ss_pred cccCCCcccccccccCCCCCeeecC-CCCeeCHhhHHHHhccC--CCCccccccc
Q 029012 131 ASEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQVC 182 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~~--~tCP~CR~~l 182 (200)
...++..|+||++.| .+| +.++ |||.||..||..|+..+ ..||+||+.+
T Consensus 9 ~~~~~~~C~IC~~~~--~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIM--TDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEEC--SSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhh--cCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345678999999999 688 5778 99999999999999754 4999999987
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=1.8e-14 Score=93.53 Aligned_cols=53 Identities=23% Similarity=0.515 Sum_probs=41.9
Q ss_pred CCCccccccc-ccCC-CCCeeecCCCCeeCHhhHHHHhcc-CCCCccccccccchh
Q 029012 134 EEDTCPICLE-EYDT-ENPKLITKCEHHFHLSCILEWNER-SESCPICDQVCLLQL 186 (200)
Q Consensus 134 ~~~~C~ICle-~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~l~~~~ 186 (200)
++..|+||++ .+.. ....++++|||.||..||.+|+.. ...||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 4677999999 7722 222257899999999999999765 458999999998763
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-14 Score=96.68 Aligned_cols=53 Identities=36% Similarity=0.770 Sum_probs=45.8
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc------CCCCccccccccchhH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQVCLLQLL 187 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~------~~tCP~CR~~l~~~~~ 187 (200)
..+...|+||++.+ .++ +.++|||.||..||..|+.. ...||+||+.+..+++
T Consensus 16 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELL--TQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCC--SSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred ccCCCCCCCCCccc--CCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 34678899999999 677 47899999999999999987 7799999999987643
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.42 E-value=2.3e-14 Score=105.12 Aligned_cols=54 Identities=24% Similarity=0.611 Sum_probs=45.8
Q ss_pred cCCCcccccccccCC----CCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchh
Q 029012 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQL 186 (200)
Q Consensus 133 ~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~ 186 (200)
.++..|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457889999999932 233479999999999999999999999999999988663
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.40 E-value=8.2e-14 Score=102.14 Aligned_cols=62 Identities=21% Similarity=0.556 Sum_probs=50.8
Q ss_pred cccCCCcccccccccCC----CCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhHHhhhhhhhh
Q 029012 131 ASEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLLVCAISRCFF 196 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~~~~~~~~~~ 196 (200)
..++...|+||++.|.. ....+.++|||.||..||.+|++.+.+||+||+.+..+ .+.++|+
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~----~~~~~~~ 133 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK----RYHPIYI 133 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG----GEEEECC
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh----cceeeeC
Confidence 34567889999999832 23347899999999999999999999999999999987 5555553
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.40 E-value=9e-14 Score=101.53 Aligned_cols=49 Identities=29% Similarity=0.450 Sum_probs=43.0
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC-CCccccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVCLL 184 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~l~~ 184 (200)
+++..|+||++.| .+| +.++|||.||..||..|+.... +||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELV--FRP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBC--SSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHH--cCc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4678899999999 678 5789999999999999998555 99999998865
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=86.16 Aligned_cols=44 Identities=41% Similarity=1.035 Sum_probs=37.6
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhc---cCCCCccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~~~tCP~C 178 (200)
..+...|+||++.+ .++ ++++|||.||..||.+|+. ...+||+|
T Consensus 12 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYL--KEP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBC--SSC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCccc--Ccc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34678899999999 677 5789999999999999954 56699998
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.38 E-value=1.7e-13 Score=93.84 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=46.8
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhH
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLL 187 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~ 187 (200)
.++..|+||++.+ .+| ++++|||.||+.||.+|+....+||+||+.+..+.+
T Consensus 12 p~~~~CpI~~~~m--~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred chheECcccCchh--cCC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 4678999999999 899 588899999999999999988999999999886653
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.37 E-value=1.1e-13 Score=99.73 Aligned_cols=49 Identities=29% Similarity=0.597 Sum_probs=43.1
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-CCCCccccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVCLL 184 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~l~~ 184 (200)
.++..|+||++.+ .+| +.++|||.||..||.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc--Cce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4568899999999 688 57799999999999999987 6699999999864
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.37 E-value=1.8e-13 Score=104.76 Aligned_cols=49 Identities=31% Similarity=0.722 Sum_probs=43.3
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-CCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~l~ 183 (200)
.+...|+||++.| .+++.+++|||.||..||..|+.. ...||+||..+.
T Consensus 52 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4567899999999 678766699999999999999997 779999999885
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=1.1e-13 Score=99.04 Aligned_cols=52 Identities=35% Similarity=0.763 Sum_probs=44.4
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC---CCccccccccchhH
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE---SCPICDQVCLLQLL 187 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~---tCP~CR~~l~~~~~ 187 (200)
.+...|+||++.+ .++ +.++|||.||..||..|+..+. +||+||+.+....+
T Consensus 19 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 19 QKILECPICLELI--KEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHHTSCSSSCCCC--SSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred cCCCCCcccChhh--cCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 3467899999999 678 4689999999999999998764 89999999886643
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.35 E-value=2.8e-13 Score=98.13 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=45.6
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC-CCccccccccchh
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVCLLQL 186 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~l~~~~ 186 (200)
.++...|+||++.+ .+| +.++|||.||..||.+|+.... +||+||+.+..+.
T Consensus 15 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMAL--REA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhh--cCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 35678899999999 678 5789999999999999998876 9999999988764
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.35 E-value=3.5e-13 Score=94.68 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=46.8
Q ss_pred cCCCcccccccccCCCCCeeecCCC-CeeCHhhHHHHhccCCCCccccccccchhH
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQVCLLQLL 187 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~ 187 (200)
.++..|+||++.+ .+| ++++|| |.||+.||.+|+....+||+||+.+..+.+
T Consensus 20 p~~~~CpI~~~~m--~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBC--SSE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccc--cCC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 4678899999999 899 589999 999999999999998899999999886653
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.35 E-value=3.8e-13 Score=94.83 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=47.0
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLL 187 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~ 187 (200)
..++..|+||++.+ .+| ++++|||.||+.||.+|+....+||+||+.+..+.+
T Consensus 26 ~p~~~~CpI~~~~m--~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 26 APDEFRDPLMDTLM--TDP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp CSTTTBCTTTCSBC--SSE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred CcHhhCCcCccCcc--cCC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 35678999999999 899 578899999999999999988899999999886543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=101.65 Aligned_cols=50 Identities=26% Similarity=0.467 Sum_probs=44.1
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC-CCccccccccch
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVCLLQ 185 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~l~~~ 185 (200)
.+...|+||++.| .+| +.++|||.||..||..|+.... +||+||+.+...
T Consensus 76 ~~~~~C~IC~~~~--~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELV--YQP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBC--SSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhh--cCC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4568899999999 788 4689999999999999998765 899999998865
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.33 E-value=7.7e-13 Score=89.07 Aligned_cols=55 Identities=18% Similarity=0.434 Sum_probs=43.8
Q ss_pred ccCCCcccccccccCCCCCeeecC--CCCeeCHhhHHHHhcc-CCCCccccccccchhH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITK--CEHHFHLSCILEWNER-SESCPICDQVCLLQLL 187 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~--C~H~Fh~~CI~~Wl~~-~~tCP~CR~~l~~~~~ 187 (200)
.+++..|+||++.+...++ ..++ |||.||..||.+|+.. ...||+||+.+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4567889999999854444 3444 9999999999999854 5699999999886643
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.33 E-value=4e-13 Score=96.90 Aligned_cols=52 Identities=31% Similarity=0.634 Sum_probs=45.2
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-CCCCccccccccchhH
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVCLLQLL 187 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~l~~~~~ 187 (200)
.++..|+||++.+ .+| +.++|||.||..||.+|+.. ..+||+||+.+..+++
T Consensus 21 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 21 VKSISCQICEHIL--ADP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHHTBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCcHh--cCc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 3467899999999 678 46899999999999999997 6799999999887653
No 50
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=86.34 Aligned_cols=51 Identities=20% Similarity=0.532 Sum_probs=42.6
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC--CCCccccccccch
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPICDQVCLLQ 185 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~--~tCP~CR~~l~~~ 185 (200)
+....|+||.+.+..+ ..-..|+|.||..||.+||+.+ .+||+||+.+..+
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4567899999999533 3455999999999999999988 7999999988744
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=2.6e-13 Score=85.54 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=41.0
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
+.+...|+||++.| .+| ++++|||.||..||..| ...||+||+.+...
T Consensus 3 e~~~~~C~IC~~~~--~~p-~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEA--KCP-KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSC--BCC-SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCcc--CCe-EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 35678899999999 678 58999999999999885 66899999988754
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.29 E-value=7.1e-13 Score=85.87 Aligned_cols=48 Identities=27% Similarity=0.567 Sum_probs=41.7
Q ss_pred cCCCcccccccccCCCCCeeec--CCCCe-eCHhhHHHHhccCCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLIT--KCEHH-FHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l--~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
+++..|.||++.+ .+.+ ++ ||||. ||..|+.+|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGC-IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEE-EEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEE-EECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4567899999998 5664 44 99999 899999999999999999999885
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=3.1e-13 Score=97.74 Aligned_cols=50 Identities=26% Similarity=0.579 Sum_probs=43.1
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchh
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQL 186 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~ 186 (200)
.+...|+||++.| .+|+.+.+|||.||..||..|+. ..||+||+.+....
T Consensus 20 ~~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 4678899999999 78854449999999999999998 89999999986543
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=98.11 Aligned_cols=49 Identities=18% Similarity=0.502 Sum_probs=42.9
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC-CCcccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVCL 183 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~l~ 183 (200)
.+++..|+||++.+ .+| +.++|||.||..||.+|+.... +||+||+++.
T Consensus 28 l~~~~~C~IC~~~~--~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVL--RRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhh--cCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678899999999 788 5789999999999999998765 9999999764
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.25 E-value=7.8e-13 Score=88.08 Aligned_cols=46 Identities=26% Similarity=0.637 Sum_probs=40.0
Q ss_pred cCCCcccccccccCCCCCeeecCCCCe-eCHhhHHHHhccCCCCccccccccch
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
+++..|+||++.+ .++ +.++|||. ||..|+..| ..||+||+.+...
T Consensus 22 ~~~~~C~iC~~~~--~~~-~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 22 QEEKLCKICMDRN--IAI-VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHHTBCTTTSSSB--CCE-EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred ccCCCCCCCCCCC--CCE-EEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 3567899999998 667 68899999 999999999 8999999988743
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.24 E-value=1.9e-12 Score=83.54 Aligned_cols=49 Identities=18% Similarity=0.457 Sum_probs=41.4
Q ss_pred cCCCcccccccccCCCCCe-eecCCCCe-eCHhhHHHHhccCCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPK-LITKCEHH-FHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~l~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
+....|.||++.. .+.+ +.+||||. ||..|+.+|.+....||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4567899999987 5553 23499998 999999999998899999999985
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.8e-12 Score=89.31 Aligned_cols=52 Identities=27% Similarity=0.482 Sum_probs=42.9
Q ss_pred ccCCCcccccccccCCCCCeeec-CCCCeeCHhhHHHHhccC------CCCcc--cccc-ccchh
Q 029012 132 SEEEDTCPICLEEYDTENPKLIT-KCEHHFHLSCILEWNERS------ESCPI--CDQV-CLLQL 186 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l-~C~H~Fh~~CI~~Wl~~~------~tCP~--CR~~-l~~~~ 186 (200)
..++..|+||++.| .+|+ ++ .|||.||+.||.+||... .+||+ |++. +...+
T Consensus 4 ~~~~~~CPI~~~~~--~dPV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 4 GSSGFTCPITKEEM--KKPV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp CSSCCBCTTTCSBC--SSEE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CCcEeECcCcCchh--cCCE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 35678899999999 7995 56 599999999999999864 49999 9866 55444
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=94.57 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=45.7
Q ss_pred cccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC-CCccccccccchh
Q 029012 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVCLLQL 186 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~l~~~~ 186 (200)
..++...|+||++.+ .+| +.++|||.||..||.+|+.... +||+||..+..+.
T Consensus 14 ~~~~~~~C~IC~~~~--~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMAL--REA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhh--cCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 345678899999999 788 4689999999999999998755 9999999988764
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.15 E-value=2.1e-11 Score=104.43 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=43.6
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhc-cCCCCccccccccch
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~l~~~ 185 (200)
....|+||++.+ .++ +.++|||.||..||..|+. ...+||+||+.+...
T Consensus 331 ~~~~C~ICle~~--~~p-v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAEND--KDV-KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSB--CCE-EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCC--CCe-EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 347899999999 666 6899999999999999999 788999999998765
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.14 E-value=1.2e-11 Score=101.36 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=45.5
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC-CCccccccccchhH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVCLLQLL 187 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~l~~~~~ 187 (200)
..+...|+||++.+ .+| ++++|||.||+.||.+|+.... +||+||.++....+
T Consensus 205 ~~~~~~c~i~~~~~--~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CCSTTBCTTTCSBC--SSE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CCcccCCcCcCCHh--cCC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 34678899999999 899 5889999999999999998744 59999999986553
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=9.5e-12 Score=82.91 Aligned_cols=44 Identities=27% Similarity=0.654 Sum_probs=37.6
Q ss_pred CCCcccccccccCCCCCeeecCCCCe-eCHhhHHHHhccCCCCccccccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
++..|+||++.+ .++ ++++|||. ||..|+.. ...||+||+.+..
T Consensus 24 ~~~~C~IC~~~~--~~~-~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAI-VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSC--CCB-CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCC--CCE-EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 456799999998 677 58999999 99999964 3799999998864
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.07 E-value=4.4e-11 Score=97.07 Aligned_cols=56 Identities=34% Similarity=0.637 Sum_probs=48.0
Q ss_pred cccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC--CCCcc--ccccccchhHH
Q 029012 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPI--CDQVCLLQLLV 188 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~--~tCP~--CR~~l~~~~~~ 188 (200)
....+..|+||++.| .+|++.+.|||.||+.||.+|+... .+||+ ||+.+...++.
T Consensus 177 ~~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 177 GGKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SSBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred CCceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 346788999999999 8997767999999999999999865 48999 99988876643
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.06 E-value=5e-11 Score=92.16 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=46.2
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC-CCCccccccccchhHH
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQVCLLQLLV 188 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~l~~~~~~ 188 (200)
..+...|+||++.+ .+| ++++|||.|++.||..|+... .+||+||.++....+.
T Consensus 103 ip~~f~CPI~~elm--~DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 103 IPDYLCGKISFELM--REP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI 157 (179)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CcHhhcccCccccC--CCC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc
Confidence 35678999999999 799 577999999999999999874 4799999998866533
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.99 E-value=4.6e-11 Score=80.49 Aligned_cols=45 Identities=31% Similarity=0.590 Sum_probs=38.6
Q ss_pred CCCcccccccccCCCCCeeecCCCCe-eCHhhHHHHhccCCCCccccccccch
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
++..|.||++.+ .++ +.+||||. ||..|+..| ..||+||+.+...
T Consensus 17 ~~~~C~IC~~~~--~~~-v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEE--INS-TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSB--CCE-EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCccc--CcE-EEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 456799999998 566 68999999 999999987 3999999988753
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.97 E-value=2.2e-10 Score=73.29 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=44.3
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchhH
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQLL 187 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~~ 187 (200)
...|+|+++.+ .+|++..++||.|.+.||.+|++.+.+||+.++++..+++
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 36799999999 7995444999999999999999988899999999987753
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.7e-10 Score=73.30 Aligned_cols=45 Identities=24% Similarity=0.597 Sum_probs=38.4
Q ss_pred cCCCcccccccccCCCCCeeecCCCCe-eCHhhHHHHhccCCCCccccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
++...|.||++.. .+. +++||||. ||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~--~~~-v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNW-VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCC-EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC--CCE-EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 4567899999988 565 79999999 99999984 5799999998864
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=3.6e-10 Score=78.37 Aligned_cols=56 Identities=27% Similarity=0.558 Sum_probs=42.2
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc--------CCCCcc--cccc--ccchhHH
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--------SESCPI--CDQV--CLLQLLV 188 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~--------~~tCP~--CR~~--l~~~~~~ 188 (200)
.+...|+||++.+...+.+.+++|||.||..||..|++. .-.||. |+.. +..+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 356789999999943333344589999999999999874 238999 9998 6655433
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.93 E-value=5.3e-10 Score=71.28 Aligned_cols=49 Identities=33% Similarity=0.672 Sum_probs=39.9
Q ss_pred cCCCcccccccccCCCCCeeecCCC--C---eeCHhhHHHHhcc--CCCCccccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCE--H---HFHLSCILEWNER--SESCPICDQVCLL 184 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~--H---~Fh~~CI~~Wl~~--~~tCP~CR~~l~~ 184 (200)
+++..|.||+++. ++++ ++||. | .||..||.+|+.. +.+||+||..+..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5677899999985 5664 68865 4 8999999999975 5699999998753
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.92 E-value=2.8e-10 Score=95.43 Aligned_cols=54 Identities=26% Similarity=0.493 Sum_probs=41.7
Q ss_pred ccCCCcccccccccCCCCCe-----eecCCCCeeCHhhHHHHhccC-----------CCCccccccccch
Q 029012 132 SEEEDTCPICLEEYDTENPK-----LITKCEHHFHLSCILEWNERS-----------ESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~-----~~l~C~H~Fh~~CI~~Wl~~~-----------~tCP~CR~~l~~~ 185 (200)
++....|+||++.+.....+ ...+|+|.||..||.+||+.. .+||.||++|...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45677899999999542221 135899999999999999753 4799999998744
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.85 E-value=4.1e-10 Score=95.57 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=40.3
Q ss_pred cCCCcccccccccCCCCCeeecCCCCe-eCHhhHHHHhccCCCCccccccccch
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
+++..|+||++.+ .++ +.+||||. ||..|+..| ..||+||..+...
T Consensus 293 ~~~~~C~IC~~~~--~~~-v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKE--VSV-VFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSB--CCE-EEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcC--Cce-EEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4678899999999 677 58899999 999999988 7899999998743
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.47 E-value=9.2e-08 Score=66.16 Aligned_cols=45 Identities=20% Similarity=0.486 Sum_probs=38.0
Q ss_pred cccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-CCCCcccccccc
Q 029012 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVCL 183 (200)
Q Consensus 137 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~l~ 183 (200)
.|.+|--.+ ....++.||.|.||.+|+..|.++ .++||+|+.++.
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 478887777 455689999999999999999865 679999999886
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.07 E-value=2.8e-06 Score=68.42 Aligned_cols=50 Identities=20% Similarity=0.523 Sum_probs=40.8
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC--CCccccccccch
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~--tCP~CR~~l~~~ 185 (200)
....|.||.+.... .+....|+|.||..|+..|++.+. .||.|+..+..+
T Consensus 179 ~i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 47789999999953 334445999999999999998755 999999987654
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.81 E-value=0.00087 Score=46.19 Aligned_cols=34 Identities=18% Similarity=0.479 Sum_probs=26.3
Q ss_pred CCCcccccccccCCCCCeee--cCCCCeeCHhhHHH-Hh
Q 029012 134 EEDTCPICLEEYDTENPKLI--TKCEHHFHLSCILE-WN 169 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~--l~C~H~Fh~~CI~~-Wl 169 (200)
++..|.||++.+. .++ +. +.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~-~~a-v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDA-VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSC-CBC-CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCC-CCc-eEECCcCChHHhHHHCHHHhc
Confidence 4578999998641 334 34 99999999999998 53
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.73 E-value=0.00052 Score=46.64 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=39.2
Q ss_pred cCCCcccccccccCCCCCeeecCC-CCeeCHhhHHHHhccCCCCccccccccch
Q 029012 133 EEEDTCPICLEEYDTENPKLITKC-EHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C-~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
-.-..|-.|.-.. . .+..| .|.+|+.|+...|.++..||+|+.+++..
T Consensus 26 ~G~~nCKsCWf~~----k-~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFEN----K-GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCC----S-SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhcccc----C-CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3456799998765 2 35566 59999999999999999999999998754
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.79 E-value=0.03 Score=35.65 Aligned_cols=47 Identities=19% Similarity=0.451 Sum_probs=35.3
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC----CCccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQVC 182 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~----tCP~CR~~l 182 (200)
.....|.||.+. ++-+.--.|...||..|+...|.... .||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999864 45555567899999999988876543 899997643
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.84 E-value=0.081 Score=50.04 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=45.7
Q ss_pred ccCCCcccccccccCCCCCeeecCCC-CeeCHhhHHHHhccCCCCccccccccchh
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQVCLLQL 186 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~ 186 (200)
.-++..|+|=++.+ .+| ++++-| ++|-+..|.+|+....+||+=|+++..+.
T Consensus 888 iP~~F~cPIs~~lM--~DP-VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 888 VPDEFLDPLMYTIM--KDP-VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp SCGGGBCTTTCSBC--SSE-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CcHHhCCcchhhHH--hCC-eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 34578899999999 899 588987 69999999999999999999999988665
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.73 E-value=0.14 Score=33.96 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=23.4
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHH
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW 168 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W 168 (200)
..+..|.||- .+..++..----|+-.||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 4678899995 3321222223347899999999986
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.54 E-value=0.061 Score=37.56 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=29.4
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~ 170 (200)
..+++.|.||.+.-+..+-+.-..|+..||..|+..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 357888999988753233356678999999999987765
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.83 E-value=0.05 Score=35.27 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=35.1
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc----CCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~l~ 183 (200)
.+...|.||........-+.--.|.-.||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 455679999887632233344468899999999755442 337999987654
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.30 E-value=0.048 Score=34.20 Aligned_cols=50 Identities=28% Similarity=0.497 Sum_probs=34.4
Q ss_pred ccCCCcccccccccCC-CCCeeecCCCCeeCHhhHHHHhc-----cCCCCcccccc
Q 029012 132 SEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQV 181 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~ 181 (200)
.++...|+||...+.. +.-+.--.|..-||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567889999998843 22334447889999999864322 34589999653
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.11 E-value=0.2 Score=29.74 Aligned_cols=44 Identities=25% Similarity=0.621 Sum_probs=30.3
Q ss_pred cccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCccccc
Q 029012 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (200)
Q Consensus 137 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~ 180 (200)
.|.||...-..++-+.--.|...||..|+..=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998765334445555788999999996544332 26999965
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.53 E-value=0.17 Score=31.38 Aligned_cols=46 Identities=26% Similarity=0.699 Sum_probs=33.2
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~ 180 (200)
...+..|.||.+. ++-+.--.|...||..|+..-+... -.||.|++
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3567789999873 3444555788999999998755432 28999965
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.40 E-value=0.083 Score=32.91 Aligned_cols=49 Identities=18% Similarity=0.445 Sum_probs=34.0
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCcccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVCL 183 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~l~ 183 (200)
...+..|.||.+. ++-+.--.|...||..|+..-+... -.||.|+....
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3457789999863 3444455688999999998654432 27999976543
No 84
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.24 E-value=0.18 Score=42.67 Aligned_cols=52 Identities=25% Similarity=0.456 Sum_probs=38.1
Q ss_pred CCCcccccccccCCCCCeeecCCCCe--eCHhhHHHHhccC--CCCccccccccchhH
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNERS--ESCPICDQVCLLQLL 187 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~--Fh~~CI~~Wl~~~--~tCP~CR~~l~~~~~ 187 (200)
-.+.|+|=+..+ ..|++-..|.|. |-+.=+.....+. -.||+|.+.+..+++
T Consensus 248 vSL~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 248 MSLQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp EESBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred EeecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 357899888888 889999999998 4444444444333 389999998876653
No 85
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.79 E-value=0.22 Score=42.03 Aligned_cols=52 Identities=27% Similarity=0.534 Sum_probs=38.8
Q ss_pred CCCcccccccccCCCCCeeecCCCCe--eCHhhHHHHhccCC--CCccccccccchhH
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNERSE--SCPICDQVCLLQLL 187 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~--Fh~~CI~~Wl~~~~--tCP~CR~~l~~~~~ 187 (200)
-.+.|+|=+..+ ..|++-..|.|. |-+.=+.....+.. .||+|.+.+..+++
T Consensus 214 vSL~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 214 VSLMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp EESBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred EeeeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 357799988888 789999999999 55544444444333 89999998876653
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.75 E-value=0.12 Score=39.38 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=34.5
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVC 182 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~l 182 (200)
.+++.|.||.+. ++-+.--.|...||..|+...+... -.||.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 356789999865 4555555789999999987766542 2799998754
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.22 E-value=0.091 Score=32.04 Aligned_cols=46 Identities=26% Similarity=0.620 Sum_probs=32.7
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC----CCccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQ 180 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~----tCP~CR~ 180 (200)
..++..|.||.+. ++-+.--.|...||..|+..-+.... .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4567889999874 35555567899999999986544322 6888853
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.39 E-value=0.13 Score=39.98 Aligned_cols=48 Identities=25% Similarity=0.516 Sum_probs=34.0
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVC 182 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~l 182 (200)
...++.|.+|... ++-+.--.|...||..|+...+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3466789999864 3433444688999999997766543 2799998643
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.28 E-value=0.11 Score=32.12 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=34.0
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~l~ 183 (200)
..+..|.||... ++-+.--.|...||..|+..-+... -.||.|+....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 356789999874 4555566789999999998644432 27999966443
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.11 E-value=0.13 Score=32.47 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=33.2
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCcccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~ 181 (200)
.++..|.||.+. ++-+.--.|...||..|+..-+... -.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 467889999874 4555555788999999998544432 279999653
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=86.33 E-value=0.82 Score=33.42 Aligned_cols=47 Identities=26% Similarity=0.488 Sum_probs=34.9
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhc---------cCC--CCcccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---------RSE--SCPICDQV 181 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---------~~~--tCP~CR~~ 181 (200)
...++.|.||.+. ++-+.--.|-..||..||..-+. ... .||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4567889999986 35555557889999999997663 122 89999854
No 92
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=86.08 E-value=0.33 Score=37.08 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=34.0
Q ss_pred CCcccccccccCCCC----CeeecCCCCeeCHhhHHH------Hhc-----cCCCCcccccccc
Q 029012 135 EDTCPICLEEYDTEN----PKLITKCEHHFHLSCILE------WNE-----RSESCPICDQVCL 183 (200)
Q Consensus 135 ~~~C~ICle~~~~~~----~~~~l~C~H~Fh~~CI~~------Wl~-----~~~tCP~CR~~l~ 183 (200)
+..|+||...|...+ -+.--.|..-||..|+.- -+. ..-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 456999999996544 233446889999999842 111 1569999988644
No 93
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.73 E-value=0.43 Score=29.51 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=31.1
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~C 178 (200)
..|--|+..|.......-..|++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998322223467899999999965444556699988
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.32 E-value=0.51 Score=31.63 Aligned_cols=47 Identities=26% Similarity=0.671 Sum_probs=34.2
Q ss_pred ccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCC----CCcccccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQV 181 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~----tCP~CR~~ 181 (200)
...++.|.||.+. ++-+.--.|.-.||..|+..=+.... .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3567789999875 35555557889999999976554322 79999754
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.19 E-value=0.34 Score=31.10 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=32.1
Q ss_pred cccCCCccccccccc--CCCCCeeecCCCCeeCHhhHHHHhcc--CCCCccccc
Q 029012 131 ASEEEDTCPICLEEY--DTENPKLITKCEHHFHLSCILEWNER--SESCPICDQ 180 (200)
Q Consensus 131 ~~~~~~~C~ICle~~--~~~~~~~~l~C~H~Fh~~CI~~Wl~~--~~tCP~CR~ 180 (200)
...++..|.||.+.- ..++-+.--.|.-.||..|+..-..- .=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345678899998764 22223334478899999999743221 227888854
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=84.09 E-value=0.17 Score=33.91 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=34.2
Q ss_pred ccCCCcccccccccC-C-CCCeeecCCCCeeCHhhHHHHhcc--CCCCccccccccch
Q 029012 132 SEEEDTCPICLEEYD-T-ENPKLITKCEHHFHLSCILEWNER--SESCPICDQVCLLQ 185 (200)
Q Consensus 132 ~~~~~~C~ICle~~~-~-~~~~~~l~C~H~Fh~~CI~~Wl~~--~~tCP~CR~~l~~~ 185 (200)
.+++..|.||..... . .+-+.--.|.-.||..|+..-+.- .-.||.|.......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 456788999987541 1 122233468889999999753322 22799997654433
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.92 E-value=2.6 Score=29.15 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCccccccccc------CCCCCeeecCCCCeeCHhhHH
Q 029012 134 EEDTCPICLEEY------DTENPKLITKCEHHFHLSCIL 166 (200)
Q Consensus 134 ~~~~C~ICle~~------~~~~~~~~l~C~H~Fh~~CI~ 166 (200)
....|.+|+..- ..++-+.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998752 223445566899999999995
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.34 E-value=0.97 Score=30.72 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=31.8
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc---CCCCcccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~---~~tCP~CR~~ 181 (200)
++...| ||-.....+.-+.--.|.-.||..|+..=+.. .-.||.|+..
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 344567 89776644444455578899999998643222 3389999743
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.23 E-value=0.16 Score=34.30 Aligned_cols=49 Identities=18% Similarity=0.494 Sum_probs=33.2
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCcccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~ 181 (200)
.+...|.||...-....-+.--.|...||..|+..=|... =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4567799998865323344555789999999997433322 269999653
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.33 E-value=0.97 Score=29.35 Aligned_cols=49 Identities=27% Similarity=0.472 Sum_probs=32.5
Q ss_pred cCCCcccccccccC-CCCCeeecCCCCeeCHhhHHHHhc-----cCCCCccccccc
Q 029012 133 EEEDTCPICLEEYD-TENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQVC 182 (200)
Q Consensus 133 ~~~~~C~ICle~~~-~~~~~~~l~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~l 182 (200)
.+...| ||...++ .+.-+.--.|..-||..|+.--.. ....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 455667 9998874 233344457889999999952211 345899998754
No 101
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.84 E-value=1.1 Score=30.09 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=29.2
Q ss_pred cCCCcccccccccCCCCCeeecC--CC-CeeCHhhHHHHhcc----CCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~~l~ 183 (200)
.+...| ||..... +.-+.--. |. ..||..|+. |.. +-.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 355667 9988652 22222223 54 579999996 332 338999987543
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.61 E-value=1.8 Score=27.14 Aligned_cols=35 Identities=29% Similarity=0.602 Sum_probs=23.1
Q ss_pred ccCCCcccccccccCCCCCe-eec-CCCCeeCHhhHH
Q 029012 132 SEEEDTCPICLEEYDTENPK-LIT-KCEHHFHLSCIL 166 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~-~~l-~C~H~Fh~~CI~ 166 (200)
.+....|.+|...+...... .-- .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45667899999998543332 333 788999999983
No 103
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.06 E-value=0.61 Score=30.07 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=31.2
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHH---------hccCCCCcccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW---------NERSESCPICDQV 181 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W---------l~~~~tCP~CR~~ 181 (200)
+...| ||...+..+.-+.--.|..-||..|+.-- ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34667 89888743333444478899999998421 1246699999754
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=78.81 E-value=0.51 Score=29.97 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=31.9
Q ss_pred cccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHh---ccCCCCccccc
Q 029012 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN---ERSESCPICDQ 180 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl---~~~~tCP~CR~ 180 (200)
...+...| ||...+..+.-+.--.|..-||..|+.--- .....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34566778 998877422233444688999999985322 13448998865
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.04 E-value=1.2 Score=28.51 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=29.0
Q ss_pred cCCCcccccccccCCCCCeeecC--CC-CeeCHhhHHHHhcc----CCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~~l~ 183 (200)
.+...| ||..... +.-+.--. |. ..||..|+. |.. .-.||.|+....
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 456668 8988652 22222223 55 689999997 433 238999977543
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=77.54 E-value=0.96 Score=28.13 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=33.9
Q ss_pred ccCCCcccccccccCC--CCCeeecCCCCeeCHhhHHHHhc-------cCCCCccccccc
Q 029012 132 SEEEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNE-------RSESCPICDQVC 182 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~-------~~~tCP~CR~~l 182 (200)
..++..|.||...... ++-+.--.|.-.||..|+..-+. ..-.|+.|+...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3567889999987522 23334447889999999875432 223799986543
No 107
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.33 E-value=6.5 Score=25.76 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=28.1
Q ss_pred cCCCcccccccccCCCCCeeecC--CCCeeCHhhHHHHhcc
Q 029012 133 EEEDTCPICLEEYDTENPKLITK--CEHHFHLSCILEWNER 171 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~--C~H~Fh~~CI~~Wl~~ 171 (200)
...+.|.+|.+.++...-+ .-| =+|.||.-|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 4567899999999544443 222 2699999999998874
No 108
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.38 E-value=0.78 Score=35.03 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=31.2
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCcccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQV 181 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~ 181 (200)
++.|.+|.+. ++-+..-.|...||..|+..=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999865 3444555688999999996544332 279999764
No 109
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.36 E-value=2.6 Score=30.22 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=33.0
Q ss_pred cccCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHh------c---cC--CCCcccccc
Q 029012 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN------E---RS--ESCPICDQV 181 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl------~---~~--~tCP~CR~~ 181 (200)
....++.|.||-+.- +-+.--.|-..||..||.+-+ + .. =.|++|+-.
T Consensus 53 ~Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345667799998753 333344688999999999752 1 11 289999664
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.10 E-value=1.2 Score=30.86 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=28.7
Q ss_pred ccccccccc-CCCCCeeecCCCCeeCHhhHHHHhccC----CCCccccc
Q 029012 137 TCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (200)
Q Consensus 137 ~C~ICle~~-~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~ 180 (200)
.|.||.+.- ..++-+.--.|...||..|+..-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887643 212333444688999999997655432 27999975
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.99 E-value=0.94 Score=29.38 Aligned_cols=49 Identities=22% Similarity=0.501 Sum_probs=31.5
Q ss_pred cCCCcccccccccCCCCCeeec--CCCCeeCHhhHHHHh---------ccCCCCccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWN---------ERSESCPICDQVC 182 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl---------~~~~tCP~CR~~l 182 (200)
.+...| ||-.....+.-+.-- .|...||..|+.--- .....||.|+...
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 356678 898874323333333 799999999985321 1345899997643
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.96 E-value=6.1 Score=26.38 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=36.1
Q ss_pred CCCcccccccccC---CCCC-eeecCCCCeeCHhhHH-HHhccCCCCcccccccc
Q 029012 134 EEDTCPICLEEYD---TENP-KLITKCEHHFHLSCIL-EWNERSESCPICDQVCL 183 (200)
Q Consensus 134 ~~~~C~ICle~~~---~~~~-~~~l~C~H~Fh~~CI~-~Wl~~~~tCP~CR~~l~ 183 (200)
....|.||=+.+. .+++ +..-.|+-..|+.|+. ++-+.+..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4567999999872 2333 2344688889999985 44456779999998876
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.14 E-value=0.99 Score=29.34 Aligned_cols=45 Identities=20% Similarity=0.531 Sum_probs=29.2
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-----CCCCccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~ 180 (200)
..|.||...-..++-+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368899864322344444478899999999743332 226888864
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=72.33 E-value=2.5 Score=29.27 Aligned_cols=44 Identities=23% Similarity=0.528 Sum_probs=28.3
Q ss_pred cccCCCcccccccccCCCCCeeec---CCCCeeCHhhHHHHhccCC----CCccccc
Q 029012 131 ASEEEDTCPICLEEYDTENPKLIT---KCEHHFHLSCILEWNERSE----SCPICDQ 180 (200)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~l---~C~H~Fh~~CI~~Wl~~~~----tCP~CR~ 180 (200)
...+++.|.+|.+. ++- +.= .|-..||..|+. |.... .||.|+-
T Consensus 11 ~~~~~~~C~~C~~~---G~l-l~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---GEL-VMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCCC---SEE-EECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCCC---CcE-eEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 34577889999853 333 333 488999999997 44321 5776543
No 115
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.42 E-value=1.8 Score=25.63 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=27.3
Q ss_pred cccccccccCCCCC-eeec-CCCCeeCHhhHHHH----hccCCCCcccc
Q 029012 137 TCPICLEEYDTENP-KLIT-KCEHHFHLSCILEW----NERSESCPICD 179 (200)
Q Consensus 137 ~C~ICle~~~~~~~-~~~l-~C~H~Fh~~CI~~W----l~~~~tCP~CR 179 (200)
.|.||...+..+.. +.-- .|.--||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47899888843333 2223 58889999997421 12455888885
No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.98 E-value=0.94 Score=28.83 Aligned_cols=44 Identities=23% Similarity=0.590 Sum_probs=26.6
Q ss_pred cccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-----CCCCccccc
Q 029012 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (200)
Q Consensus 137 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~ 180 (200)
.|.||...-..++-+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677653221233333368899999999854432 227999865
No 117
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=68.29 E-value=0.92 Score=29.53 Aligned_cols=44 Identities=23% Similarity=0.581 Sum_probs=25.6
Q ss_pred cccccccccCCCCCeeecCCCCeeCHhhHHHHhccC-----CCCccccc
Q 029012 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-----ESCPICDQ 180 (200)
Q Consensus 137 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-----~tCP~CR~ 180 (200)
.|.||...-..+.-+.--.|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355555443212222333688999999998655431 26898875
No 118
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=68.15 E-value=4.5 Score=26.87 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=32.7
Q ss_pred cCCCcccccccccCCCCC-eeecCCCCeeCHhhHHHHhc------cCCCCccccccc
Q 029012 133 EEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNE------RSESCPICDQVC 182 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl~------~~~tCP~CR~~l 182 (200)
.+...|.+|...|..... -.--.||+.||..|...++. ....|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 345679999999943222 24568999999999876542 122566664433
No 119
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=67.76 E-value=1.9 Score=29.35 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=10.9
Q ss_pred eeCHhhHHHHhc
Q 029012 159 HFHLSCILEWNE 170 (200)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (200)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 120
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=67.47 E-value=4.9 Score=26.25 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=26.6
Q ss_pred cCCCcccccccccCCCCCe-eecCCCCeeCHhhHHHH
Q 029012 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~W 168 (200)
.+...|.+|...|..-... ---.||+.||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4567899999999543322 44579999999997654
No 121
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=67.44 E-value=2 Score=29.25 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=10.9
Q ss_pred eeCHhhHHHHhc
Q 029012 159 HFHLSCILEWNE 170 (200)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (200)
.||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 122
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=66.51 E-value=4.2 Score=26.93 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=33.1
Q ss_pred ccCCCcccccccccCCCCCe-eecCCCCeeCHhhHHHHhc-------cCCCCccccccc
Q 029012 132 SEEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNE-------RSESCPICDQVC 182 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~Wl~-------~~~tCP~CR~~l 182 (200)
..+...|.+|...|..-... ---.||++||..|....+. ....|-.|-..+
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 35567899999999543322 3457999999999765432 223566664433
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=66.04 E-value=0.87 Score=32.30 Aligned_cols=48 Identities=19% Similarity=0.539 Sum_probs=30.9
Q ss_pred cCCCcccccccccCCCCCe-eecCCCCeeCHhhHHHHhccCCCCccccc
Q 029012 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNERSESCPICDQ 180 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~ 180 (200)
.+...|..|...|..-... ---.||..||..|....+.....|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 3456899999999432221 45689999999998777666777888844
No 124
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.42 E-value=5 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=25.9
Q ss_pred cCCCcccccccccCCCCCe-eecCCCCeeCHhhHHHH
Q 029012 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~W 168 (200)
.+...|.+|...|...... ---.||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4456899999999432221 44589999999997654
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.10 E-value=5 Score=26.09 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=26.4
Q ss_pred cCCCcccccccccCCCCCe-eecCCCCeeCHhhHHHHh
Q 029012 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWN 169 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~Wl 169 (200)
.+...|.+|...|...... ---.||..||..|....+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 4556799999999432221 345799999999986543
No 126
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.48 E-value=5.5 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=25.7
Q ss_pred cCCCcccccccccCCCCCe-eecCCCCeeCHhhHHHH
Q 029012 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~W 168 (200)
.+...|.+|...|..-... ---.||.+||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 4556899999999432222 34579999999997543
No 127
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=64.39 E-value=1.3 Score=33.07 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=31.7
Q ss_pred cCCCcccccccccCC-CCCeeecCCCCeeCHhhHHHHh-----ccCCCCcccccc
Q 029012 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWN-----ERSESCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl-----~~~~tCP~CR~~ 181 (200)
++...| ||...++. +.-+.--.|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456778 99987632 2234445788999999995211 234489999764
No 128
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=64.10 E-value=1.2 Score=27.34 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=25.7
Q ss_pred CCCcccccccccCCCCCeeecC--CC-CeeCHhhHHHHhcc----CCCCccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~ 180 (200)
+...| ||..... +.-+.--. |. ..||..|+. |.. .-.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45556 9988652 22222223 55 689999997 433 227998854
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.05 E-value=5.8 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=23.2
Q ss_pred CcccccccccC-------CCCCeeecCCCCeeCHhhHHHH
Q 029012 136 DTCPICLEEYD-------TENPKLITKCEHHFHLSCILEW 168 (200)
Q Consensus 136 ~~C~ICle~~~-------~~~~~~~l~C~H~Fh~~CI~~W 168 (200)
+.|.||+..-. .++-+.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 1234455679999999998754
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=63.01 E-value=1.4 Score=27.07 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=26.4
Q ss_pred cCCCcccccccccCCCCCeeecC--CC-CeeCHhhHHHHhcc----CCCCccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~ 180 (200)
.+...| ||..... ++-+.--. |. ..||..|+. |.. +-.||.|++
T Consensus 7 ~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345556 9988652 22222224 65 699999997 332 237999864
No 131
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=62.56 E-value=4.6 Score=20.38 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=12.4
Q ss_pred CCCccccccccchhHHh
Q 029012 173 ESCPICDQVCLLQLLVC 189 (200)
Q Consensus 173 ~tCP~CR~~l~~~~~~~ 189 (200)
..||+|.+.++..++..
T Consensus 7 vqcpvcqq~mpaahin~ 23 (29)
T 3vhs_A 7 VQCPVCQQMMPAAHINS 23 (29)
T ss_dssp EECTTTCCEEEGGGHHH
T ss_pred eeChHHHHhCcHHHHHH
Confidence 36999998888765544
No 132
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.29 E-value=4.3 Score=29.22 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=33.3
Q ss_pred cCCCcccccccccC-CCC-CeeecCCCCeeCHhhHHHHhcc-CC---CCcccccc
Q 029012 133 EEEDTCPICLEEYD-TEN-PKLITKCEHHFHLSCILEWNER-SE---SCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~-~~~-~~~~l~C~H~Fh~~CI~~Wl~~-~~---tCP~CR~~ 181 (200)
..+..|.+|...|. ..+ ...-..|.|.+|..|-..--.. +. .|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 56788999999993 222 3466789999999996432111 11 68888764
No 133
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.13 E-value=5.6 Score=29.25 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=34.1
Q ss_pred cCCCcccccccccC--CCCCeeecCCCCeeCHhhHHHHhccCC--CCcccccc
Q 029012 133 EEEDTCPICLEEYD--TENPKLITKCEHHFHLSCILEWNERSE--SCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~--~~~~~~~l~C~H~Fh~~CI~~Wl~~~~--tCP~CR~~ 181 (200)
..+..|.+|+..|. ......-..|.|.+|..|- .|..... .|-+|++.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 35788999999872 2334467789999999997 3443222 78888664
No 134
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.68 E-value=6.6 Score=24.87 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=23.8
Q ss_pred CcccccccccCCCCC-eeecCCCCeeCHhhHHHH
Q 029012 136 DTCPICLEEYDTENP-KLITKCEHHFHLSCILEW 168 (200)
Q Consensus 136 ~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 168 (200)
..|.+|...|..-.. ----.||+.||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 579999999943222 134579999999997543
No 135
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.56 E-value=1 Score=28.69 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=31.2
Q ss_pred cCCCcccccccccCCCC-CeeecCCCCeeCHhhHHHHh----ccCCCCcccccc
Q 029012 133 EEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWN----ERSESCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~Wl----~~~~tCP~CR~~ 181 (200)
.+...| ||...+..+. -+.--.|..-||..|+.--- .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 455678 7988763332 33444688899999985431 234489999653
No 136
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=61.51 E-value=1.5 Score=30.20 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=27.7
Q ss_pred cccccccccCCCCCeeecCCCCeeCHhhHHHHhcc----CCCCccccc
Q 029012 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (200)
Q Consensus 137 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----~~tCP~CR~ 180 (200)
.|.||...-....-+.--.|...||..|+..=+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 46677665432223344578899999999754443 226888854
No 137
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=61.34 E-value=7.6 Score=28.78 Aligned_cols=48 Identities=17% Similarity=0.425 Sum_probs=32.5
Q ss_pred ccccCCCcccccccccCCCCCeeec--CCCCeeCHhhHHHHhccCC----------CCccccc
Q 029012 130 AASEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNERSE----------SCPICDQ 180 (200)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~~~----------tCP~CR~ 180 (200)
+....+..|.||-+.- +-+.-- .|-..||..||..++.... .|=+|.-
T Consensus 74 DeDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CTTSSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3444577899998742 222222 5889999999999986421 6888854
No 138
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=61.27 E-value=5.8 Score=27.13 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=32.1
Q ss_pred CCcccccccccCCCCCee-ec-CCCCeeCHhhHHHH------h----ccCCCCcccccccc
Q 029012 135 EDTCPICLEEYDTENPKL-IT-KCEHHFHLSCILEW------N----ERSESCPICDQVCL 183 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~-~l-~C~H~Fh~~CI~~W------l----~~~~tCP~CR~~l~ 183 (200)
...|.||...|......+ -- .|.-.||..|+.-- | ...-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 457999999984433322 22 68899999998411 1 03348999976543
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=60.81 E-value=3.7 Score=32.25 Aligned_cols=46 Identities=22% Similarity=0.528 Sum_probs=27.3
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhcc-----CCCCccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~ 180 (200)
+..|.+|...-..+.-+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3468888764322344455578899999999854432 126999965
No 140
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=59.66 E-value=0.95 Score=28.54 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=27.3
Q ss_pred cCCCcccccccccCCCCCeeec---CCCCeeCHhhHHHHh--------ccCCCCccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLIT---KCEHHFHLSCILEWN--------ERSESCPICDQ 180 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l---~C~H~Fh~~CI~~Wl--------~~~~tCP~CR~ 180 (200)
++...| ||-.....+.- +.- .|..-||..|+.--- ..+..||.||.
T Consensus 8 e~~v~C-~C~~~~~~g~m-I~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDSM-IQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCSCE-EECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCCCE-EEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344567 89665532332 333 388899999973110 12457999974
No 141
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.27 E-value=2.1 Score=26.37 Aligned_cols=38 Identities=21% Similarity=0.596 Sum_probs=25.0
Q ss_pred CCcccccccccCC---CCCeeecC--CCCeeCHhhHHHHhccC
Q 029012 135 EDTCPICLEEYDT---ENPKLITK--CEHHFHLSCILEWNERS 172 (200)
Q Consensus 135 ~~~C~ICle~~~~---~~~~~~l~--C~H~Fh~~CI~~Wl~~~ 172 (200)
...|+-|...++- -+.+.-.. |++.||..|...|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4568888777732 12222223 89999999998887543
No 142
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=58.10 E-value=9.8 Score=32.28 Aligned_cols=49 Identities=14% Similarity=0.359 Sum_probs=34.7
Q ss_pred ccccCCCcccccccccCCCCCeeec--CCCCeeCHhhHHHHhcc----------CCCCcccccc
Q 029012 130 AASEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNER----------SESCPICDQV 181 (200)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~----------~~tCP~CR~~ 181 (200)
+....+..|.||-+.- +-+.-- .|...||..||.+++.. .=.|=+|.-.
T Consensus 88 D~DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 88 DDDGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSSSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3445577899998753 444444 79999999999999842 1278888654
No 143
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=57.43 E-value=2 Score=23.41 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=5.2
Q ss_pred CCcccccccc
Q 029012 174 SCPICDQVCL 183 (200)
Q Consensus 174 tCP~CR~~l~ 183 (200)
.||+|++.+.
T Consensus 7 iCP~C~~~l~ 16 (34)
T 3mjh_B 7 ICPQCMKSLG 16 (34)
T ss_dssp ECTTTCCEES
T ss_pred CCcHHHHHcC
Confidence 4555555544
No 144
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=57.39 E-value=0.59 Score=31.81 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=27.7
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
+..|++|..+++.. =++.+|..|-.. +.....||-|.++|.
T Consensus 32 ~~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHH
Confidence 37899999887321 134457777543 455668999999886
No 145
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=57.14 E-value=2.1 Score=28.68 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=26.7
Q ss_pred ccCCCcccccccccCCCCCeeecCCC---CeeCHhhHHHHhcc----CCCCcc-ccc
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKCE---HHFHLSCILEWNER----SESCPI-CDQ 180 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C~---H~Fh~~CI~~Wl~~----~~tCP~-CR~ 180 (200)
..+...| ||..... ++-+.--.|. ..||..|+. |.. .-.||. |++
T Consensus 23 ~~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3456677 9987542 3222222333 689999985 322 338999 974
No 146
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=57.12 E-value=1.1 Score=29.27 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=16.4
Q ss_pred CCCCeeCHhhHHHHhccCCCCc
Q 029012 155 KCEHHFHLSCILEWNERSESCP 176 (200)
Q Consensus 155 ~C~H~Fh~~CI~~Wl~~~~tCP 176 (200)
.|+|.||..|...|-. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999999855 5564
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=55.88 E-value=10 Score=23.79 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=26.4
Q ss_pred ccCCCcccccccccCCCCCeeecCC-CCeeCHhhHHHHh
Q 029012 132 SEEEDTCPICLEEYDTENPKLITKC-EHHFHLSCILEWN 169 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~l~C-~H~Fh~~CI~~Wl 169 (200)
.++..-|.||.+.- .+.-+-| |-.||..|..+--
T Consensus 5 ~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHHc
Confidence 45566799999963 4678889 8999999987753
No 148
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=55.17 E-value=2.3 Score=27.97 Aligned_cols=41 Identities=24% Similarity=0.619 Sum_probs=24.2
Q ss_pred ccccccccC--CCCCeeec-CCCCeeCHhhHHHHhccCC--CCccc
Q 029012 138 CPICLEEYD--TENPKLIT-KCEHHFHLSCILEWNERSE--SCPIC 178 (200)
Q Consensus 138 C~ICle~~~--~~~~~~~l-~C~H~Fh~~CI~~Wl~~~~--tCP~C 178 (200)
|+-|-..+. .....+.- .|++.||..|-..|=+.+. +|..-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 665544331 12222344 4999999999988843333 56543
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.96 E-value=7.1 Score=30.41 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=25.7
Q ss_pred CCCcccccccccCCCCCe-eecCCCCeeCHhhHHHH
Q 029012 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~W 168 (200)
+...|.+|...|...... ---.||+.||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999999543222 45689999999997654
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.82 E-value=7.5 Score=30.03 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=25.0
Q ss_pred CCcccccccccCCCCCe-eecCCCCeeCHhhHHHH
Q 029012 135 EDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~W 168 (200)
...|.+|...|..-... ---.||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47899999999432222 34579999999997654
No 151
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.42 E-value=1.7 Score=30.24 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=29.4
Q ss_pred cccccccccCCCCCeeecCCCCeeCHhhHHHHhccC----CCCccccccc
Q 029012 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVC 182 (200)
Q Consensus 137 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~l 182 (200)
.|.||...-..+.-+.--.|...||..|+..=|... -.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 577887654323334445788999999997544332 2699886543
No 152
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.55 E-value=4.6 Score=26.71 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=33.8
Q ss_pred cCCCcccccccccCC-CCC-eeecCCCCeeCHhhHHHHhcc--------CCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDT-ENP-KLITKCEHHFHLSCILEWNER--------SESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~-~~~l~C~H~Fh~~CI~~Wl~~--------~~tCP~CR~~l~ 183 (200)
+.+..|.||...-.. .+. +.--.|...||..|+..-|.. .-.|+.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 356789999986421 233 233468899999999865542 227999976543
No 153
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=50.17 E-value=2 Score=26.42 Aligned_cols=49 Identities=22% Similarity=0.505 Sum_probs=31.4
Q ss_pred ccCCCcccccccc-cCCCCCeeecCCCCeeCHhhHHHHhccCC----CCccccc
Q 029012 132 SEEEDTCPICLEE-YDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQ 180 (200)
Q Consensus 132 ~~~~~~C~ICle~-~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~----tCP~CR~ 180 (200)
..+...|.||+.. |.++---.-.-|.-.||..|-..|-.++. .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3567789999854 33333334556777788888777654433 5777765
No 154
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.14 E-value=10 Score=26.15 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=37.7
Q ss_pred CCcccccccccCC-CCCeeecCCCCeeCHhhHHHHhccCCCCccccccccchh
Q 029012 135 EDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQL 186 (200)
Q Consensus 135 ~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~~ 186 (200)
=..|..|...+.. +.. ....=|..||..|..+-+..+..|-.|.+.|....
T Consensus 32 CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 4678888888731 122 34556788999999988777678999999888553
No 155
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=48.13 E-value=3.5 Score=24.33 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=27.0
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHh---ccCCCCccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN---ERSESCPICDQ 180 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl---~~~~tCP~CR~ 180 (200)
..| ||......+.-+.--.|..-||..|+.--- .....||.|+.
T Consensus 5 ~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp BCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred eEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 334 787765322333444688999999985322 23448888864
No 156
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.10 E-value=14 Score=23.43 Aligned_cols=40 Identities=23% Similarity=0.539 Sum_probs=27.7
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
....|.-|-..+...+.+ ..-+..||..| ..|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSL--LALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCE--EETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEE--EECCccccccc--------CCcCcCCCCcC
Confidence 456799999888544443 23477888877 36888888775
No 157
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.77 E-value=16 Score=22.40 Aligned_cols=40 Identities=20% Similarity=0.492 Sum_probs=26.3
Q ss_pred CCcccccccccCC--CCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 135 EDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
...|.-|-+.+.. ... ++..-+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCC
Confidence 4568888887742 123 34446778887774 6778877765
No 158
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.13 E-value=15 Score=22.44 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=26.8
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
...|..|-..+...+. ++..-+..||..|. .|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCC
Confidence 4568888887743233 35556777887773 67778777654
No 159
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=47.05 E-value=1.8 Score=28.46 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=22.6
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
..|++|..++..... +.+|..|-... .....||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~~-~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKDF-SLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCEE-EEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-------ceECccccccC-CCcccCcchhhHHH
Confidence 568888877632211 34466664432 22337777777764
No 160
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.89 E-value=15 Score=23.06 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
....|.-|-+.+. .. .+.--+..||..|. .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIV--GV-FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCC--SS-CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCcc--Cc-EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 4567999999884 33 35556888998884 6888988875
No 161
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=46.88 E-value=4.3 Score=21.03 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=10.5
Q ss_pred CCCCccccccccch
Q 029012 172 SESCPICDQVCLLQ 185 (200)
Q Consensus 172 ~~tCP~CR~~l~~~ 185 (200)
+.+||+|+..++--
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 34799999887743
No 162
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.36 E-value=6.7 Score=24.75 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=27.3
Q ss_pred cCCCcccccccccCCCCCeeecCC---CCeeCHhhHHHHhc--cCCCCcccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKC---EHHFHLSCILEWNE--RSESCPICDQVCL 183 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C---~H~Fh~~CI~~Wl~--~~~tCP~CR~~l~ 183 (200)
.+...| ||..... +.-+.--.| ...||..|+.---. ..-.||.|+....
T Consensus 4 ~~~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcccc
Confidence 345556 6877541 322222233 26899999962111 1237999977553
No 163
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.04 E-value=13 Score=23.99 Aligned_cols=41 Identities=15% Similarity=0.447 Sum_probs=27.2
Q ss_pred cCCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
.....|..|-..+ ... .+..-+..||..|. .|-.|++.|..
T Consensus 23 ~~~~~C~~C~~~I--~~~-~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVI--RGP-FLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBC--CSC-EEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEe--cce-EEEECCccccccCC--------ccCCCCCCCCC
Confidence 3456788888877 233 34455778887774 67788777763
No 164
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=45.17 E-value=17 Score=25.17 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=25.6
Q ss_pred CCcccccccccCC-CCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 135 EDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 135 ~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
=..|..|...+.. +.. ....=|..||..|..+-+.....|..|.+.|..
T Consensus 29 CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCC-EEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCe-EEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 4556666655532 122 233445566666665544433366666666543
No 165
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.18 E-value=6.6 Score=24.58 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=25.3
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCH-hhHHHHhccCCCCcccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHL-SCILEWNERSESCPICDQV 181 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~-~CI~~Wl~~~~tCP~CR~~ 181 (200)
+=..|..|...+... . ....=|..||. .|..+- ....|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSG-G-HAEHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTT-T-EEEETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCCccccCccCCCC-c-eECcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 346677777777432 2 23445677777 476553 33457666543
No 166
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.78 E-value=15 Score=23.11 Aligned_cols=41 Identities=20% Similarity=0.434 Sum_probs=27.2
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
...|..|-..+...+. ++..=+..||..|. .|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQ-NVEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSC-EEECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCce-EEEECccccccccC--------chhhCCCccCC
Confidence 3568888888744344 24445778887774 67788777653
No 167
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.53 E-value=12 Score=22.89 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=24.4
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
..|..|-..+...+. ++..=+..||..|. .|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTR-KMEYKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSC-EEEETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCce-EEEECcCeecccCC--------cccccCCccCC
Confidence 468888777743333 23345667776663 57777776653
No 168
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.08 E-value=26 Score=21.55 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=28.8
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
....|.-|-..+...+. ++..-+..||..|. .|-.|++.|...
T Consensus 10 ~~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEK-IVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTT-CEEETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCce-EEEeCccEeccccC--------eECCCCCCCCCC
Confidence 35679999888853344 23345778887773 678888877643
No 169
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.23 E-value=7.6 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=20.1
Q ss_pred eeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 151 KLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 151 ~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
.....||+.|. .-+.....||.|+.....
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 36889999991 223445699999886543
No 170
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=38.18 E-value=24 Score=24.44 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=29.1
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
....|.-|-..+. ...++.--+..||..| ..|-.|++.|.
T Consensus 60 ~~~~C~~C~~~I~--~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIA--DRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCC--SSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcC--CcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 4567999998884 3323445688899888 47889988875
No 171
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.58 E-value=23 Score=22.71 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=26.7
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
....|.-|-+.+. .. .+..-+..||..|. .|-.|++.|..
T Consensus 24 ~~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIV--GA-VVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCC--SC-CEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEec--cc-EEEECCceECccCC--------EecCCCCCCCC
Confidence 3456888888773 23 34456778887773 57788777653
No 172
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.09 E-value=12 Score=23.21 Aligned_cols=40 Identities=18% Similarity=0.500 Sum_probs=25.8
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
...|..|-+.+...+. +..-+..||..|. .|-.|++.|..
T Consensus 9 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEK--VSSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTE--EEETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeE--EEECCeEeeCCCC--------CCCCCCCccCC
Confidence 4568888887743333 3344677777763 67788777763
No 173
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=36.79 E-value=18 Score=18.73 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=16.6
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhh
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSC 164 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~C 164 (200)
..|+.|-...-..+. +.-=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek--~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK--VNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGC--CCSSSSCCCGGG
T ss_pred CcCCccCCEEeccee--EEECCeEecccC
Confidence 468888776622222 334477888877
No 174
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.10 E-value=17 Score=22.05 Aligned_cols=39 Identities=23% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
...|..|-+.+. .. .+..-+..||..|. .|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFII--GR-VIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCC--SC-CEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEec--ce-EEEECcccccccCC--------EeCCCCCcCCC
Confidence 345777776663 22 23334566676663 56667666553
No 175
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=35.71 E-value=7.7 Score=32.77 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred cCCCcccccccccCCCCC-eeecCCCCeeCHhhHHHHhc-------cCCCCccccccc
Q 029012 133 EEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNE-------RSESCPICDQVC 182 (200)
Q Consensus 133 ~~~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl~-------~~~tCP~CR~~l 182 (200)
.+...|.+|...|..... -..-.||+.||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345779999999843221 24558999999999976652 133676665443
No 176
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.92 E-value=20 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.482 Sum_probs=26.5
Q ss_pred CCcccccccccCC--CCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 135 EDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
...|..|-..+.. ... .+.--+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 3568888888742 123 34455778888774 6788877765
No 177
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.68 E-value=26 Score=21.96 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
....|.-|-..+. .. .+.--+..||..| ..|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~--~~-~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID--EQ-PLIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC--SC-CCCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec--ce-EEEECcceeCCCC--------CEeCCCCCccCC
Confidence 3466888888774 33 2444577777777 368888877764
No 178
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.08 E-value=28 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=13.6
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHh
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl 169 (200)
..|..|...+..++. ....=+..||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDR-YLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCc-EEeeCCEEEcHHHhHHHh
Confidence 344444444422222 222334455555554443
No 179
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=33.81 E-value=7.9 Score=33.89 Aligned_cols=48 Identities=25% Similarity=0.480 Sum_probs=30.9
Q ss_pred cCCCcccccccccCC-CCCeeecCCCCeeCHhhHHHHhc-----cCCCCcccccc
Q 029012 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQV 181 (200)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~ 181 (200)
.+...| ||...++. +.-+..-.|.--||..|+.---. ..-.||.|+..
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 344556 99887742 33344456899999999953222 23489999754
No 180
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=33.69 E-value=9.2 Score=22.15 Aligned_cols=15 Identities=20% Similarity=0.873 Sum_probs=9.4
Q ss_pred HHhccCC--CCcccccc
Q 029012 167 EWNERSE--SCPICDQV 181 (200)
Q Consensus 167 ~Wl~~~~--tCP~CR~~ 181 (200)
.|-..-. .||+|...
T Consensus 23 ~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CGGGSCTTCBCTTTCCB
T ss_pred chhhCCCCCcCcCCCCc
Confidence 4444333 89999764
No 181
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.65 E-value=21 Score=22.66 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=28.1
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
....|..|-..+...+.+ ..-+..||..| ..|-.|++.|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 456799998887433332 34477888887 3678888777643
No 182
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=33.54 E-value=7.1 Score=24.00 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=26.1
Q ss_pred CCCcccccccccCCCCCeeecC--CC-CeeCHhhHHHHhcc----CCCCccccc
Q 029012 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~ 180 (200)
+...| ||..... +.-+.--. |. ..||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 45557 9988642 22222223 54 799999997 332 237999965
No 183
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.43 E-value=18 Score=21.84 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=28.4
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
....|.-|-..+...+. ++..=+..||..|. .|-.|++.|...
T Consensus 10 ~~~~C~~C~~~i~~~e~-~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEK-IVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCE-EEEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCce-EEEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 34578899888744343 23345677887774 688888877543
No 184
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.60 E-value=39 Score=23.06 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=25.6
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
=..|..|...+. .......=|..||..|..+- ....|..|.+.|..
T Consensus 30 CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCT--TSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCC--cCEEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 455666666663 22233445666776666442 34467777666664
No 185
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.09 E-value=42 Score=21.56 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=24.7
Q ss_pred ccCCCcccccccccCC--CCCeeecCCCCeeCHhhH
Q 029012 132 SEEEDTCPICLEEYDT--ENPKLITKCEHHFHLSCI 165 (200)
Q Consensus 132 ~~~~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI 165 (200)
...+..|..|.+.|.. ....+-..|.|..|..|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4567889999999822 122356789999999884
No 186
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.97 E-value=18 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=10.9
Q ss_pred CCeeCHhhHHHHhccCCCCcccccccc
Q 029012 157 EHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 157 ~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
|..||..|..+-+..+..|..|.+.|.
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CccccccccccccccCCccccCCCccc
Confidence 344444444433322223444444443
No 187
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.53 E-value=41 Score=21.86 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=32.5
Q ss_pred CCCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccch
Q 029012 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLLQ 185 (200)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~~ 185 (200)
+=..|..|...+. .......=|..||..|..+ .....|..|.+.|...
T Consensus 32 ~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLA--NETFVAKDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTT--SSCCEEETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCC--cCeeECcCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 4567888888873 2223445578889888643 3456899999988743
No 188
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.45 E-value=36 Score=20.90 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=19.0
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
..|.-|-..+. .. .+..-+..||..|. .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~--~~-~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYIT--GR-VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCS--SC-CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEec--Ce-eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 34666666552 22 23344556665552 4555655554
No 189
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.33 E-value=30 Score=22.22 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=12.0
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhh
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSC 164 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~C 164 (200)
..|.-|-..+...+ .+..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~--~v~a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPME--RLLANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTS--EEECSSSEEETTT
T ss_pred CcCccCCCccCCce--eEEECCCEECCCC
Confidence 34555555552212 1233445555554
No 190
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.87 E-value=31 Score=21.54 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=25.6
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
..|..|-..+..... ++..=+..||..|. .|-.|++.|..
T Consensus 16 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR-ELFYEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCC-BCCCSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcE-EEEeCCccccccCC--------eecCCCCccCC
Confidence 468888887742233 23334677887773 57788777763
No 191
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=26.63 E-value=18 Score=22.87 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=29.6
Q ss_pred CCCcccccccccCC-CCCeeecCCCCeeCHhhHHHHhc-----cCCCCcccccc
Q 029012 134 EEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQV 181 (200)
Q Consensus 134 ~~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~ 181 (200)
+...| ||...+.. +.-+.--.|.--||..|+.---. ....||.|+..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33445 89887632 22334446889999999953221 34589999764
No 192
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.47 E-value=16 Score=23.03 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=8.8
Q ss_pred HhccCCCCcccccccc
Q 029012 168 WNERSESCPICDQVCL 183 (200)
Q Consensus 168 Wl~~~~tCP~CR~~l~ 183 (200)
||..--.||+|+.++.
T Consensus 4 ~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 4 KLLDILACPICKGPLK 19 (69)
T ss_dssp CGGGTCCCTTTCCCCE
T ss_pred HHHhheeCCCCCCcCe
Confidence 4444445666666554
No 193
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.24 E-value=24 Score=22.08 Aligned_cols=37 Identities=16% Similarity=0.517 Sum_probs=25.5
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
..|..|-..+. .. .+..-+..||..|. .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~--~~-~v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE--GE-VVSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC--SC-CEEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec--cc-eEEECCceeCccCC--------ccccCCCCCC
Confidence 46888988874 23 34445778887774 6788887775
No 194
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.77 E-value=14 Score=23.24 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=19.6
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
..|..|-+.+...+. +..-+..||..|. .|-.|++.|.
T Consensus 8 ~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCC
Confidence 456666666532222 2334556665553 4556665554
No 195
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.45 E-value=92 Score=18.59 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=4.4
Q ss_pred ccccccccc
Q 029012 137 TCPICLEEY 145 (200)
Q Consensus 137 ~C~ICle~~ 145 (200)
.|..|-+.+
T Consensus 7 ~C~~C~~~I 15 (72)
T 1x61_A 7 GCGGCGEDV 15 (72)
T ss_dssp CCSSSCSCC
T ss_pred CCccCCCcc
Confidence 455555444
No 196
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.61 E-value=27 Score=21.85 Aligned_cols=38 Identities=16% Similarity=0.545 Sum_probs=23.1
Q ss_pred CCcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
...|.-|-..+. +. ++..-+..||..|. +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPIL--DR-ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCC--SC-CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeec--ce-eEEECCccccHHhc--------CcccCCCccC
Confidence 355777777663 22 23344667776663 5777777665
No 197
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.12 E-value=40 Score=20.88 Aligned_cols=37 Identities=19% Similarity=0.478 Sum_probs=23.1
Q ss_pred CcccccccccCCCCCeeecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 136 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
..|..|-+.+.. . .+..=+..||..|. .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~--~-~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ--G-GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS--C-CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecC--c-EEEECCchhhhhhC--------CcccCCCcCC
Confidence 457777777632 2 24445677777663 5777777764
No 198
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.34 E-value=31 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCcccccccccCC---CCCeeecCCCCeeCHhhHHHHhccCCCCccccccccc
Q 029012 135 EDTCPICLEEYDT---ENPKLITKCEHHFHLSCILEWNERSESCPICDQVCLL 184 (200)
Q Consensus 135 ~~~C~ICle~~~~---~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~~ 184 (200)
...|+-|-..+.. ... .+..=+..||..| ..|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSS-VVAYEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCC-EEEETTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCce-eEEECcceeCccc--------CEehhcCCCCCC
Confidence 3568889888743 123 3444577888877 468888888763
No 199
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.19 E-value=15 Score=22.96 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=10.3
Q ss_pred HHhccCCCCccccccccc
Q 029012 167 EWNERSESCPICDQVCLL 184 (200)
Q Consensus 167 ~Wl~~~~tCP~CR~~l~~ 184 (200)
.||..--.||+|+.++..
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 344455566777666553
No 200
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.81 E-value=30 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=18.1
Q ss_pred eecCCCCeeCHhhHHHHhccCCCCcccccccc
Q 029012 152 LITKCEHHFHLSCILEWNERSESCPICDQVCL 183 (200)
Q Consensus 152 ~~l~C~H~Fh~~CI~~Wl~~~~tCP~CR~~l~ 183 (200)
....|||.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 566788888533 23348999988754
No 201
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.72 E-value=52 Score=22.13 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=23.7
Q ss_pred CCCcccccccccCC-CCCeeecCCCCeeCHhhHHHHhccCC
Q 029012 134 EEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSE 173 (200)
Q Consensus 134 ~~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~ 173 (200)
+=..|..|...+.. +.. ....=|..||..|..+-+..+-
T Consensus 29 ~CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~~~c 68 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGGSGG 68 (114)
T ss_dssp TTCCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHTSCC
T ss_pred hcCcccccCCchhcCCCe-eEEECCeeechHHHHHHhCccc
Confidence 44677788777732 122 3344467788888877665543
No 202
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.76 E-value=38 Score=22.82 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=6.7
Q ss_pred CCccccccccc
Q 029012 174 SCPICDQVCLL 184 (200)
Q Consensus 174 tCP~CR~~l~~ 184 (200)
.||+|...+..
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 46666666553
No 203
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.14 E-value=12 Score=22.58 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=4.9
Q ss_pred CCcccccccc
Q 029012 174 SCPICDQVCL 183 (200)
Q Consensus 174 tCP~CR~~l~ 183 (200)
.||+|+.++.
T Consensus 12 ~CP~c~~~L~ 21 (56)
T 2kpi_A 12 ACPACHAPLE 21 (56)
T ss_dssp CCSSSCSCEE
T ss_pred eCCCCCCcce
Confidence 4555555443
Done!