Query 029015
Match_columns 200
No_of_seqs 234 out of 1330
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 5.6E-26 1.9E-30 159.2 6.0 60 44-103 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 86.6 0.43 1.5E-05 34.1 2.7 28 40-69 3-31 (77)
3 3jtz_A Integrase; four strande 80.7 3.6 0.00012 29.4 5.6 44 48-91 28-75 (88)
4 1z1b_A Integrase; protein-DNA 80.6 2.2 7.5E-05 35.6 5.1 42 46-91 14-55 (356)
5 1u3e_M HNH homing endonuclease 78.1 0.37 1.3E-05 38.2 -0.5 39 45-86 109-147 (174)
6 3ju0_A Phage integrase; four s 68.6 8.6 0.00029 28.5 5.1 44 48-91 28-75 (108)
7 2ftc_I Mitochondrial ribosomal 32.3 66 0.0022 24.1 4.7 37 55-93 79-115 (118)
8 1x60_A Sporulation-specific N- 29.0 41 0.0014 22.3 2.8 23 66-88 45-67 (79)
9 1uta_A FTSN, MSGA, cell divisi 27.3 54 0.0018 22.0 3.2 31 58-88 37-67 (81)
10 2bn8_A CEDA, cell division act 26.3 28 0.00097 24.7 1.6 38 43-83 38-75 (87)
11 1kcq_A Gelsolin, brevin, ADF, 20.2 1.5E+02 0.005 20.9 4.6 33 57-89 30-62 (104)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=5.6e-26 Score=159.21 Aligned_cols=60 Identities=47% Similarity=0.736 Sum_probs=57.1
Q ss_pred ceeEEEECCCCeEEEEEeecCC-CcEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 029015 44 IFRGVRMRNNNKWVCELREPNK-KSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADS 103 (200)
Q Consensus 44 ~yrGVr~r~~GkW~AeIr~p~~-~kri~LGtf~t~eeAArAyD~Aa~~l~G~~a~lNFp~s 103 (200)
+||||+++++|||+|+|++|.+ +++||||||+|+||||+|||.|+++++|..+++|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 4999998889999999999975 79999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=86.55 E-value=0.43 Score=34.08 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=21.1
Q ss_pred CCCCceeEE-EECCCCeEEEEEeecCCCcEE
Q 029015 40 TRHPIFRGV-RMRNNNKWVCELREPNKKSRI 69 (200)
Q Consensus 40 ~~~s~yrGV-r~r~~GkW~AeIr~p~~~kri 69 (200)
+..|+|.|| +..+.+.|+|.-.+ ++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 467899999 55567999999988 55543
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=80.74 E-value=3.6 Score=29.40 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=31.7
Q ss_pred EEECCCC--eEEEEEeecCCCcEEeecCCC--CHHHHHHHHHHHHHhh
Q 029015 48 VRMRNNN--KWVCELREPNKKSRIWLGTYP--TPEMAARAHDVAALAL 91 (200)
Q Consensus 48 Vr~r~~G--kW~AeIr~p~~~kri~LGtf~--t~eeAArAyD~Aa~~l 91 (200)
++-++.| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4445544 499998886667789999998 5788877776655544
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=80.64 E-value=2.2 Score=35.57 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=30.4
Q ss_pred eEEEECCCCeEEEEEeecCCCcEEeecCCCCHHHHHHHHHHHHHhh
Q 029015 46 RGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALAL 91 (200)
Q Consensus 46 rGVr~r~~GkW~AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa~~l 91 (200)
.||++++.|.|..++.. .|+++.+|. |..+|..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 35777777899877654 788899996 8888877766544443
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=78.13 E-value=0.37 Score=38.23 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=28.6
Q ss_pred eeEEEECCCCeEEEEEeecCCCcEEeecCCCCHHHHHHHHHH
Q 029015 45 FRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDV 86 (200)
Q Consensus 45 yrGVr~r~~GkW~AeIr~p~~~kri~LGtf~t~eeAArAyD~ 86 (200)
++||...+.++|.+.|.. . +.++||.|.|.+|||++|..
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 456632223568888888 5 66789999999999999653
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=68.57 E-value=8.6 Score=28.46 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=30.7
Q ss_pred EEECCCC--eEEEEEeecCCCcEEeecCCC--CHHHHHHHHHHHHHhh
Q 029015 48 VRMRNNN--KWVCELREPNKKSRIWLGTYP--TPEMAARAHDVAALAL 91 (200)
Q Consensus 48 Vr~r~~G--kW~AeIr~p~~~kri~LGtf~--t~eeAArAyD~Aa~~l 91 (200)
++-.+.| .|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445544 399998886667789999998 4777776666554444
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=32.32 E-value=66 Score=24.11 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=30.5
Q ss_pred eEEEEEeecCCCcEEeecCCCCHHHHHHHHHHHHHhhcC
Q 029015 55 KWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRG 93 (200)
Q Consensus 55 kW~AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa~~l~G 93 (200)
.|+|.|.. ...-+-++...+++.|..|...|+.+|-+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 49999987 77677777778899999999999988743
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=28.98 E-value=41 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=18.5
Q ss_pred CcEEeecCCCCHHHHHHHHHHHH
Q 029015 66 KSRIWLGTYPTPEMAARAHDVAA 88 (200)
Q Consensus 66 ~kri~LGtf~t~eeAArAyD~Aa 88 (200)
--|+++|.|.+.++|..+.+...
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHH
Confidence 35789999999999998876543
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=27.29 E-value=54 Score=22.03 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=21.6
Q ss_pred EEEeecCCCcEEeecCCCCHHHHHHHHHHHH
Q 029015 58 CELREPNKKSRIWLGTYPTPEMAARAHDVAA 88 (200)
Q Consensus 58 AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa 88 (200)
+.|.....--|+.+|-|.+.++|..+-+...
T Consensus 37 a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 37 SKITTNNGWNRVVIGPVKGKENADSTLNRLK 67 (81)
T ss_dssp EEEEECSSSEEEEESSCBTTTHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEECCcCCHHHHHHHHHHHH
Confidence 3443323346889999999999988876543
No 10
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=26.34 E-value=28 Score=24.67 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=24.5
Q ss_pred CceeEEEECCCCeEEEEEeecCCCcEEeecCCCCHHHHHHH
Q 029015 43 PIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARA 83 (200)
Q Consensus 43 s~yrGVr~r~~GkW~AeIr~p~~~kri~LGtf~t~eeAArA 83 (200)
-+||-|+.-+ |||+|.+..... --.--.|..+|.|-|=
T Consensus 38 d~frdvw~lr-gkyvafvl~ge~--frrspafsvpesaqrw 75 (87)
T 2bn8_A 38 DSFRDVWMLR-GKYVAFVLMGES--FLRSPAFTVPESAQRW 75 (87)
T ss_dssp TTCTTEEEET-TEEEEBCCSSSC--CCBCCCBSSHHHHHHH
T ss_pred ccchhheeec-cceEEEEEechh--hccCCccCCcHHHHHH
Confidence 3599997655 899998776222 1122467777776653
No 11
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=20.21 E-value=1.5e+02 Score=20.87 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=26.8
Q ss_pred EEEEeecCCCcEEeecCCCCHHHHHHHHHHHHH
Q 029015 57 VCELREPNKKSRIWLGTYPTPEMAARAHDVAAL 89 (200)
Q Consensus 57 ~AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa~ 89 (200)
-+.|-.....-.+|.|...+..|...|-..|..
T Consensus 30 d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~ 62 (104)
T 1kcq_A 30 DCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62 (104)
T ss_dssp SEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467777556678899999999999999888754
Done!