BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029016
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 24/172 (13%)
Query: 9 ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQ 68
++LPPGFRF PTDEEL+V +L RK A +I ++DLY +DPW L KAL +
Sbjct: 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 72
Query: 69 WYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGV 120
WYF+S + + NR+ G+GYWK G ++ +++ ++VG+KK +F++G+A G
Sbjct: 73 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGT 131
Query: 121 KTNWIMQEYRLXXXXXXXXXXXXXXXXXXXXXXXXXDYSKWVICRVFERNCD 172
KTNWIM EYRL WV+CR++++
Sbjct: 132 KTNWIMHEYRL---------------IEPSRRNGSTKLDDWVLCRIYKKQSS 168
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Query: 1 MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
M +A A +NLPPGFRF PTD+EL+ H+L RK A +I ++DLY +DPW L
Sbjct: 3 MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62
Query: 61 KALAEGNQWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFH 112
+AL +WYF++ + + NR GNGYWK G ++ V R + +G+KK +F+
Sbjct: 63 RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG-RTLGIKKALVFY 121
Query: 113 LGEASAGVKTNWIMQEYRL 131
G+A GVKT+WIM EYRL
Sbjct: 122 AGKAPRGVKTDWIMHEYRL 140
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 24/172 (13%)
Query: 9 ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQ 68
++LPPGFRF PTDEEL+V +L RK A +I ++DLY +DPW L KAL +
Sbjct: 16 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 75
Query: 69 WYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGV 120
WYF+S + + NR+ G+GYWK G ++ +++ ++VG+KK +F++G+A G
Sbjct: 76 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGT 134
Query: 121 KTNWIMQEYRLXXXXXXXXXXXXXXXXXXXXXXXXXDYSKWVICRVFERNCD 172
KTNWIM EYRL WV+CR++++
Sbjct: 135 KTNWIMHEYRL---------------IEPSRRNGSTKLDDWVLCRIYKKQSS 171
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 16/66 (24%)
Query: 21 PTDEEL--LVHFLQRKVALLPCHPDVIPDL------------DLYPYDPWQLNGKALAEG 66
PT+EE+ FL+++++ + D I L ++YPYDP +++GK L G
Sbjct: 183 PTEEEVKRFFEFLEKELSKVKKPVDTIVGLGGTITTLAALEYNVYPYDPQKVHGKVLTYG 242
Query: 67 N--QWY 70
+W+
Sbjct: 243 QIKKWF 248
>pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
pdb|2J4R|B Chain B, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
Length = 308
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 16/66 (24%)
Query: 21 PTDEEL--LVHFLQRKVALLPCHPDVIPDL------------DLYPYDPWQLNGKALAEG 66
PT+EE+ FL+++++ + D I L ++YPYDP +++GK L G
Sbjct: 178 PTEEEVKRFFEFLEKELSKVKKPVDTIVGLGGTITTLAALEYNVYPYDPQKVHGKVLTYG 237
Query: 67 N--QWY 70
+W+
Sbjct: 238 QIKKWF 243
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 16/66 (24%)
Query: 21 PTDEEL--LVHFLQRKVALLPCHPDVIPDL------------DLYPYDPWQLNGKALAEG 66
PT+EE+ FL+++++ + D I L ++YPYDP +++GK L G
Sbjct: 183 PTEEEVKRFFEFLEKELSKVKKPVDTIVGLGGTITTLAALEYNVYPYDPQKVHGKVLTYG 242
Query: 67 N--QWY 70
+W+
Sbjct: 243 QIKKWF 248
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 40 CHPDVIPDLDLYP----YDPWQLNGKALAEGNQWYFYSRKTQNRMTGNG 84
HP + L +P +DP + G LAEG + + +R+TG G
Sbjct: 30 AHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRG 78
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated
Cytochorome P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated
Cytochorome P450 From Thermus Thermophilus Hb8
Length = 389
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 40 CHPDVIPDLDLYP----YDPWQLNGKALAEGNQWYFYSRKTQNRMTGNG 84
HP + L +P +DP + G LAEG + + +R+TG G
Sbjct: 30 AHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRG 78
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 16 GFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG--KALAEGNQWYFY 72
G R+CP+ E+ +V F ++ + P+ + +++YP NG +L E QW Y
Sbjct: 300 GPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYP------NGLSTSLPEEVQWEMY 352
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 1103 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 1134
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 1094 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 1125
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 262 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 293
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 878 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 909
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 41 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 72
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 42 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 73
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 48 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 79
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 50 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 81
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 42 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 73
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 41 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 72
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 43 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 74
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 90 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 121
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 92 EESVLTRADKKVGLKKYYIFHLGEASAGVKTN 123
+E+VL R D GL Y H+ + GVK N
Sbjct: 76 KEAVLVRVDSSSGLGDYLELHIHQGKIGVKFN 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,121,887
Number of Sequences: 62578
Number of extensions: 233818
Number of successful extensions: 546
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 24
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)