Query 029016
Match_columns 200
No_of_seqs 130 out of 954
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.4E-55 2.2E-59 352.6 15.8 157 4-171 6-170 (174)
2 1ut7_A No apical meristem prot 100.0 8.4E-54 2.9E-58 345.5 15.6 156 1-172 4-168 (171)
3 1ldd_A APC2WHB, anaphase promo 26.7 33 0.0011 23.0 2.0 27 13-40 36-63 (74)
4 3nr5_A MAF1, repressor of RNA 23.4 20 0.00069 27.8 0.4 13 45-57 119-131 (164)
5 1cmb_A Met APO-repressor; DNA- 19.8 1.2E+02 0.0043 21.1 3.8 38 20-61 50-87 (104)
6 3cpr_A Dihydrodipicolinate syn 18.6 38 0.0013 28.3 1.2 20 11-31 116-135 (304)
7 3fkr_A L-2-keto-3-deoxyarabona 18.5 54 0.0019 27.4 2.1 21 11-31 108-130 (309)
8 1ym0_B Fibrinotic enzyme compo 18.1 70 0.0024 16.8 1.7 12 5-16 16-27 (27)
9 4dox_A Coat protein; all helix 18.0 48 0.0016 27.1 1.6 27 10-36 152-178 (226)
10 1f6k_A N-acetylneuraminate lya 17.6 47 0.0016 27.5 1.5 20 11-31 104-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.4e-55 Score=352.55 Aligned_cols=157 Identities=43% Similarity=0.895 Sum_probs=133.7
Q ss_pred ccCCCCCCCCCCCeEEcCCHHHHHHHHHHHHHhCCCCCCCceecCCCCCCCCCCcccccccCCceEEEEeec--------
Q 029016 4 NINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK-------- 75 (200)
Q Consensus 4 ~~~~~~~~~LPpG~rF~PTDeELv~~YL~~k~~g~pl~~~~I~~~Dvy~~~P~~L~~~~~~~~~~wyFF~~~-------- 75 (200)
...+++++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+....++.+|||||++
T Consensus 6 ~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~ 85 (174)
T 3ulx_A 6 ERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGS 85 (174)
T ss_dssp ---CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----C
T ss_pred ccccccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCC
Confidence 345678899999999999999999999999999999999999999999999999999887778899999987
Q ss_pred ccceecccceeeeCCcceeEEcCCceeEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCccccCCCCCCcccccccCCCC
Q 029016 76 TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSK 155 (200)
Q Consensus 76 r~~R~~g~G~Wk~~g~~k~I~~~~g~~vG~kr~f~F~~~~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (200)
|.+|++++|+||++|..+.|.+. |.+||+|++|+||.++++++.+|+|+||||+|....... ..+ ....
T Consensus 86 R~nR~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~---~~~-------~~~~ 154 (174)
T 3ulx_A 86 RPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAA---AGA-------KKGS 154 (174)
T ss_dssp CSCEEETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--------------------
T ss_pred CceeecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcc---ccc-------ccCC
Confidence 57899999999999999999764 899999999999999999999999999999999886210 000 0112
Q ss_pred CCCCceEEEEEEEeCC
Q 029016 156 TDYSKWVICRVFERNC 171 (200)
Q Consensus 156 ~~~~~~VLCkIy~k~~ 171 (200)
+..++|||||||+|+.
T Consensus 155 ~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 155 LRLDDWVLCRLYNKKN 170 (174)
T ss_dssp -CCSSEEEEEEEESCC
T ss_pred CCCCCEEEEEEEEcCC
Confidence 3458999999999975
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8.4e-54 Score=345.47 Aligned_cols=156 Identities=44% Similarity=0.905 Sum_probs=132.1
Q ss_pred CCCccCC-CCCCCCCCCeEEcCCHHHHHHHHHHHHHhCCCCCCCceecCCCCCCCCCCcccccccCCceEEEEeec----
Q 029016 1 MGDNINA-NANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK---- 75 (200)
Q Consensus 1 ~~~~~~~-~~~~~LPpG~rF~PTDeELv~~YL~~k~~g~pl~~~~I~~~Dvy~~~P~~L~~~~~~~~~~wyFF~~~---- 75 (200)
|+..++. ..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+....++++||||+++
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 5555443 46789999999999999999999999999999999999999999999999999887778899999987
Q ss_pred ----ccceecccceeeeCCcceeEEcCCceeEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCccccCCCCCCccccccc
Q 029016 76 ----TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRR 151 (200)
Q Consensus 76 ----r~~R~~g~G~Wk~~g~~k~I~~~~g~~vG~kr~f~F~~~~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~ 151 (200)
|.+|++++|+||++|..+.|... |.+||+|++|+||.++++++.+|+|+||||+|......
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~-------------- 148 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR-------------- 148 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------------
T ss_pred CCCCcccccCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc--------------
Confidence 57899999999999999999764 69999999999999999999999999999999987510
Q ss_pred CCCCCCCCceEEEEEEEeCCC
Q 029016 152 VNSKTDYSKWVICRVFERNCD 172 (200)
Q Consensus 152 ~~~~~~~~~~VLCkIy~k~~~ 172 (200)
......++|||||||+|+..
T Consensus 149 -~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 149 -NGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp -------CCEEEEEEEECC--
T ss_pred -cCcccCCCEEEEEEEEcCCC
Confidence 01123489999999999764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=26.65 E-value=33 Score=23.04 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=21.8
Q ss_pred CCCCeEEcC-CHHHHHHHHHHHHHhCCCC
Q 029016 13 LPPGFRFCP-TDEELLVHFLQRKVALLPC 40 (200)
Q Consensus 13 LPpG~rF~P-TDeELv~~YL~~k~~g~pl 40 (200)
.|.|+.|.. |++||-. ||..++....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 367889998 9999887 99999986544
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=23.36 E-value=20 Score=27.84 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=11.0
Q ss_pred eecCCCCCCCCCC
Q 029016 45 IPDLDLYPYDPWQ 57 (200)
Q Consensus 45 I~~~Dvy~~~P~~ 57 (200)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 6788999999983
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=19.77 E-value=1.2e+02 Score=21.11 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCceecCCCCCCCCCCcccc
Q 029016 20 CPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGK 61 (200)
Q Consensus 20 ~PTDeELv~~YL~~k~~g~pl~~~~I~~~Dvy~~~P~~L~~~ 61 (200)
|-|-.||+..-...-..|+|||. +.|+-...|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 45677877766667889999986 457888888888864
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=18.62 E-value=38 Score=28.29 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=15.7
Q ss_pred CCCCCCeEEcCCHHHHHHHHH
Q 029016 11 VNLPPGFRFCPTDEELLVHFL 31 (200)
Q Consensus 11 ~~LPpG~rF~PTDeELv~~YL 31 (200)
+-+|| |.|.||+++|+.||-
T Consensus 116 lv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 116 LVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 45677 558899999999883
No 7
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=18.47 E-value=54 Score=27.42 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=15.9
Q ss_pred CCCCCCeE--EcCCHHHHHHHHH
Q 029016 11 VNLPPGFR--FCPTDEELLVHFL 31 (200)
Q Consensus 11 ~~LPpG~r--F~PTDeELv~~YL 31 (200)
+-+||-|- |.||+++|+.||-
T Consensus 108 lv~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 108 MAMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EECCSCBTTTBCCCHHHHHHHHH
T ss_pred EEcCCCCccCCCCCHHHHHHHHH
Confidence 45677442 8999999999873
No 8
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=18.07 E-value=70 Score=16.84 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=8.7
Q ss_pred cCCCCCCCCCCC
Q 029016 5 INANANVNLPPG 16 (200)
Q Consensus 5 ~~~~~~~~LPpG 16 (200)
-+.+..+.||||
T Consensus 16 ysdagdmelppg 27 (27)
T 1ym0_B 16 YSDAGDMELPPG 27 (27)
T ss_dssp STTTTCCCCCCC
T ss_pred cccccccccCCC
Confidence 345577899997
No 9
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=17.96 E-value=48 Score=27.07 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=18.5
Q ss_pred CCCCCCCeEEcCCHHHHHHHHHHHHHh
Q 029016 10 NVNLPPGFRFCPTDEELLVHFLQRKVA 36 (200)
Q Consensus 10 ~~~LPpG~rF~PTDeELv~~YL~~k~~ 36 (200)
.++-+-|..+.||++|+|.|=..+++.
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344455899999999999987666554
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=17.58 E-value=47 Score=27.49 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=15.4
Q ss_pred CCCCCCeEEcCCHHHHHHHHH
Q 029016 11 VNLPPGFRFCPTDEELLVHFL 31 (200)
Q Consensus 11 ~~LPpG~rF~PTDeELv~~YL 31 (200)
+-+||- .|.||+++|+.||-
T Consensus 104 lv~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 104 SAVTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp EEECCC-SSCCCHHHHHHHHH
T ss_pred EECCCC-CCCCCHHHHHHHHH
Confidence 345664 48899999999884
Done!