BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029017
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M028|LMBD2_ARATH LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460
PE=2 SV=1
Length = 509
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/200 (90%), Positives = 194/200 (97%)
Query: 1 MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
MYPQGE+AET+WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIK 369
Query: 61 LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429
Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFL 489
Query: 181 YYAAFGWRRRKPSGKFQLSS 200
YY AFGWRR+KPSG+FQLS+
Sbjct: 490 YYIAFGWRRKKPSGRFQLST 509
>sp|Q9SR93|LMBD1_ARATH LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930
PE=2 SV=2
Length = 509
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/200 (88%), Positives = 193/200 (96%)
Query: 1 MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
MYPQGE+AET+WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIK 369
Query: 61 LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429
Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFL 489
Query: 181 YYAAFGWRRRKPSGKFQLSS 200
YY AFGWRR+K SG+FQLSS
Sbjct: 490 YYIAFGWRRKKTSGRFQLSS 509
>sp|Q658I5|LMBD1_ORYSJ LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica
GN=Os06g0128200 PE=2 SV=1
Length = 510
Score = 319 bits (817), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 163/200 (81%), Positives = 182/200 (91%)
Query: 1 MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
MYPQGE+AE +WALTVLGY+ KL+ G +G I+S+AWVAHIVIYLLI+PPL FLNE+F+K
Sbjct: 311 MYPQGEQAEATWALTVLGYIGKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVK 370
Query: 61 LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
LD +WGLLGTAAFAFFCFYLL+AVIAG MMLGL+LVFITIHPMKWG TLMNSFLFNVGLI
Sbjct: 371 LDGVWGLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLI 430
Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
LLCSISVIQFC+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQ FV LA LT
Sbjct: 431 LLCSISVIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLF 490
Query: 181 YYAAFGWRRRKPSGKFQLSS 200
YYA FGWR+RKP+G+FQLS+
Sbjct: 491 YYAIFGWRKRKPTGRFQLSN 510
>sp|D8RQM9|CSPLJ_SELML CASP-like protein SELMODRAFT_413556 OS=Selaginella moellendorffii
GN=SELMODRAFT_413556 PE=3 SV=1
Length = 185
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 98/123 (79%), Gaps = 8/123 (6%)
Query: 2 YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
+PQGEKA+TSWA+TVL YLAKLV GILG +S+ W+ HI++++L+NPP PFLN+VFI+L
Sbjct: 69 FPQGEKADTSWAVTVLFYLAKLVFGILGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQL 128
Query: 62 DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLIL 121
D WGLLGT AFA FC+YL+++VI+G M +IHPMK+ TLMNSFLFNV +IL
Sbjct: 129 DSAWGLLGTTAFAIFCYYLIMSVISGEMH--------SIHPMKYQGTLMNSFLFNVAIIL 180
Query: 122 LCS 124
LCS
Sbjct: 181 LCS 183
>sp|D8S069|CSPLI_SELML CASP-like protein SELMODRAFT_416718 OS=Selaginella moellendorffii
GN=SELMODRAFT_416718 PE=3 SV=1
Length = 187
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 81/103 (78%), Gaps = 8/103 (7%)
Query: 2 YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
+PQGEKA+TSWALTVL YLAKLV GILG +SV W+ HI++++L+NPP PFLN+VFI+L
Sbjct: 93 FPQGEKADTSWALTVLFYLAKLVFGILGLALSVIWLLHIIVFMLVNPPAFPFLNQVFIQL 152
Query: 62 DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 104
D WGLLGT AFA FC+YL+++VI+G M +I+PMK
Sbjct: 153 DSAWGLLGTTAFAIFCYYLVMSVISGEMH--------SIYPMK 187
>sp|D8TFA8|LMBD3_SELML LIMR family protein SELMODRAFT_432208 OS=Selaginella moellendorffii
GN=SELMODRAFT_432208 PE=3 SV=2
Length = 410
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 85/108 (78%), Gaps = 5/108 (4%)
Query: 2 YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
+PQGEK LTVL YLAKLV GI+G +S+ W+ HI++++L+NPP PFLN+VFI+L
Sbjct: 272 FPQGEKT-----LTVLFYLAKLVFGIVGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQL 326
Query: 62 DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATL 109
D + GLLGT FA FC+YL+++VI+G M LG+RL+F++IHPMK+ TL
Sbjct: 327 DTVGGLLGTTTFAIFCYYLVMSVISGKMHLGMRLLFLSIHPMKYQGTL 374
>sp|D8S072|CSPLK_SELML CASP-like protein SELMODRAFT_416721 OS=Selaginella moellendorffii
GN=SELMODRAFT_416721 PE=3 SV=1
Length = 166
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 79/103 (76%), Gaps = 8/103 (7%)
Query: 2 YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
+PQGEKA+TSWA+TVL LAKLV GILG +SV W HI++++L+NPP PFLN+VFI+L
Sbjct: 72 FPQGEKADTSWAVTVLFSLAKLVFGILGLALSVIWPLHIIVFMLVNPPAFPFLNQVFIQL 131
Query: 62 DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 104
D WGLLGT AFA FC+YL+++VI+G M +IHPMK
Sbjct: 132 DSAWGLLGTTAFAIFCYYLVMSVISGEMH--------SIHPMK 166
>sp|D8TFB0|LMBD1_SELML LIMR family protein SELMODRAFT_432210 OS=Selaginella moellendorffii
GN=SELMODRAFT_432210 PE=3 SV=1
Length = 321
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 80/99 (80%)
Query: 6 EKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLW 65
++ +TSWALTVL YLAKLV GILG +S+ W+ HI++++L+NPP PFLN+VFI+LD
Sbjct: 223 QQEDTSWALTVLFYLAKLVFGILGLALSIIWLLHILVFMLVNPPAFPFLNQVFIQLDSAG 282
Query: 66 GLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 104
LLGT FA FC+Y +++VI+G M LG++L+F++IHPMK
Sbjct: 283 DLLGTTPFAIFCYYFVMSVISGEMHLGMKLLFLSIHPMK 321
>sp|Q54QP7|Y3707_DICDI LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum
GN=DDB_G0283707 PE=3 SV=2
Length = 507
Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 16 VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLGTAAFA 74
V+ Y A+ G + VS+ W+ HI+IY++ P P HPFLN + I L++ WG LG +
Sbjct: 328 VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLGVIVYG 387
Query: 75 FFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVIQFCST 133
FYLL V+ G GLRL F+ IHPM+ G T+MN+FLFNVGLIL+ S+S+ FC+
Sbjct: 388 LLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSITHFCTM 447
Query: 134 AFGYYAQATAAQEIFGHTLESLRGIKY---LYKYNVFQIA 170
AF + TA +F +++L+ +K+ +Y + VF +A
Sbjct: 448 AFSQFTSTTAINSLFETAVKNLKILKWFWVVYIFGVFVMA 487
>sp|Q54BI3|Y3610_DICDI LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum
GN=DDB_G0293610 PE=3 SV=1
Length = 507
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Query: 16 VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLGTAAFA 74
V+ Y A+ G + VS+ W+ HI+IY++ P P HPFLN + I L++ WG LG +
Sbjct: 328 VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLGVIVYG 387
Query: 75 FFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVIQFCST 133
FYLL V+ G GLRL F+ IHPM+ G T+MN+FLFNVGLIL+ S+S+ FC+
Sbjct: 388 LLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSITHFCTM 447
Query: 134 AFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQI 169
AF + T+ +F +++L+ +K+ + +F I
Sbjct: 448 AFSQFTSTTSINSLFETAVKNLKILKWFWVVYIFAI 483
>sp|D8S067|LMBD2_SELML LIMR family protein SELMODRAFT_416716 OS=Selaginella moellendorffii
GN=SELMODRAFT_416716 PE=3 SV=1
Length = 264
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 72/99 (72%), Gaps = 11/99 (11%)
Query: 6 EKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLW 65
++A+TSWALTV +S+ W+ HI++++L+NPP PFLN+VFI+LD W
Sbjct: 177 QQADTSWALTVRN-----------LALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAW 225
Query: 66 GLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 104
GLLGT FA FC+YL+++VI+G M LG+RL+ ++IHPMK
Sbjct: 226 GLLGTTTFAIFCYYLVMSVISGEMHLGMRLLLLSIHPMK 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.145 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,103,167
Number of Sequences: 539616
Number of extensions: 2542619
Number of successful extensions: 7480
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7459
Number of HSP's gapped (non-prelim): 34
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.9 bits)