Query 029017
Match_columns 200
No_of_seqs 63 out of 65
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:09:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04791 LMBR1: LMBR1-like mem 99.8 6.5E-19 1.4E-23 161.9 14.2 153 14-177 317-469 (471)
2 KOG3722 Lipocalin-interacting 71.4 4.5 9.8E-05 39.2 3.6 105 19-128 343-451 (538)
3 TIGR00383 corA magnesium Mg(2+ 57.2 34 0.00074 30.0 6.2 42 138-182 268-309 (318)
4 PF13268 DUF4059: Protein of u 56.6 15 0.00032 27.4 3.2 28 167-194 13-41 (72)
5 KOG2296 Integral membrane prot 46.0 2.5E+02 0.0055 28.7 10.8 101 22-128 364-465 (673)
6 PHA02132 hypothetical protein 42.7 33 0.00072 25.9 3.2 30 168-197 13-44 (86)
7 COG0598 CorA Mg2+ and Co2+ tra 42.2 63 0.0014 29.1 5.6 45 138-185 272-316 (322)
8 PRK09546 zntB zinc transporter 42.1 82 0.0018 28.1 6.3 39 139-180 275-313 (324)
9 PF11359 gpUL132: Glycoprotein 42.0 23 0.0005 31.5 2.7 42 34-92 47-89 (235)
10 PF06679 DUF1180: Protein of u 36.3 36 0.00077 28.7 2.9 31 168-198 98-131 (163)
11 COG5488 Integral membrane prot 34.5 52 0.0011 27.9 3.5 32 24-55 30-62 (164)
12 PF02060 ISK_Channel: Slow vol 32.6 31 0.00066 28.3 1.8 74 123-196 5-78 (129)
13 PRK11085 magnesium/nickel/coba 31.0 1.1E+02 0.0023 28.0 5.3 48 130-180 258-305 (316)
14 PRK10726 hypothetical protein; 25.6 2.8E+02 0.006 22.1 6.0 84 3-87 11-104 (105)
15 KOG0380 Sterol O-acyltransfera 23.3 6.6E+02 0.014 25.1 9.4 90 2-97 297-390 (523)
16 PF13073 DUF3937: Protein of u 23.2 1.3E+02 0.0029 22.2 3.6 32 112-143 5-36 (73)
17 PF08611 DUF1774: Fungal prote 22.6 3.6E+02 0.0078 21.1 6.1 15 121-135 34-48 (97)
18 PF01405 PsbT: Photosystem II 21.8 1.7E+02 0.0036 18.3 3.3 21 167-187 4-24 (29)
19 PF10917 DUF2708: Protein of u 20.8 38 0.00083 22.9 0.3 15 164-178 4-18 (43)
20 PF01102 Glycophorin_A: Glycop 20.4 81 0.0018 25.4 2.2 10 181-190 85-94 (122)
No 1
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=99.80 E-value=6.5e-19 Score=161.89 Aligned_cols=153 Identities=24% Similarity=0.349 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 029017 14 LTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGL 93 (200)
Q Consensus 14 ~~~l~~y~~L~lGii~~iiSi~WilHIily~l~~~p~~pfLN~~fi~Ld~~~~llgt~~ya~f~~YLl~c~ikG~~k~Gl 93 (200)
+..+.++.+.++|+++.++|++|+.|.+.....+ +++.+++..|+.++.+|.++.+++.+|+++|+.+|.+++|.
T Consensus 317 ~~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~~~~ 391 (471)
T PF04791_consen 317 YCYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFKLKI 391 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence 3466888889999999999999999999887766 99999999999999999999999999999999999999998
Q ss_pred hcceeEeeeeccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHH
Q 029017 94 RLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVV 173 (200)
Q Consensus 94 rl~~f~ihPMk~~~T~mnSfLFN~~LiLl~s~aviQFc~~aF~~Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~ 173 (200)
+..|||++|+|.+++.|+|.++.+..+.+.+||+..+|..|++.|+.+++ .+++++.|.|+++.++++++++.+
T Consensus 392 ----f~~y~l~p~~ts~~~sL~f~a~~l~Rl~~PL~fNfl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T PF04791_consen 392 ----FRFYPLVPHHTSDNSSLFFSAIYLCRLAPPLCFNFLGMIRYDSTTSFNNI--VQIQSLLGLGFFYYFPIFILLFCI 465 (471)
T ss_pred ----heeccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--cccccceecchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 677799999999988877777766
Q ss_pred HHHH
Q 029017 174 LAGL 177 (200)
Q Consensus 174 ~s~L 177 (200)
.+.+
T Consensus 466 ~t~~ 469 (471)
T PF04791_consen 466 LTYF 469 (471)
T ss_pred HHHH
Confidence 6554
No 2
>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]
Probab=71.43 E-value=4.5 Score=39.24 Aligned_cols=105 Identities=28% Similarity=0.378 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH-HHh--hhhhHHHHHHHHHHHHHHHHHHHHhhhHhhhhhc
Q 029017 19 YLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVF-IKL--DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRL 95 (200)
Q Consensus 19 ~y~~L~lGii~~iiSi~WilHIily~l~~~p~~pfLN~~f-i~L--d~~~~llgt~~ya~f~~YLl~c~ikG~~k~Glrl 95 (200)
|=+..++=.+.+-+|++-+++-++..++|.-..|---+-+ +.- =+.++++|..+=-+..|||+..++.|--. +
T Consensus 343 yP~am~lLLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg~~ig~~Sls~fG~fGA~lEv~LIfYlmvtSvVGfYS----l 418 (538)
T KOG3722|consen 343 YPLAMLLLLVLTTCSVLLVATNTLELLIGERALPVYTQGFAIGVHSLSKFGLFGACIEVLLIFYLMVTSVVGFYS----L 418 (538)
T ss_pred hHHHHHHHHHHhhhHHHHHHHhHHHHHhCcccCccccccccccceehhhccchHHHHHHHHHHHHHHHHHhhhhc----c
Confidence 3344555577888999999999999999864555433322 111 13489999999999999999999999643 3
Q ss_pred cee-EeeeeccCCchhHHHHHHHHHHHHHHHHHH
Q 029017 96 VFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 128 (200)
Q Consensus 96 ~~f-~ihPMk~~~T~mnSfLFN~~LiLl~s~avi 128 (200)
++| +..| |++||.|...+-|.+-+|..|-|.=
T Consensus 419 pffr~~~P-kr~dTtM~qIIgNcv~iLVlSSALP 451 (538)
T KOG3722|consen 419 PFFRSLRP-KRDDTTMPQIIGNCVSILVLSSALP 451 (538)
T ss_pred hhhhccCc-CccCCccchHhhhceeeeeeccccH
Confidence 555 6666 7789999999999998888776543
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=57.17 E-value=34 Score=30.05 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHHHH
Q 029017 138 YAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYY 182 (200)
Q Consensus 138 Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i~~ 182 (200)
.++-|-+..+||-.++++.+.++-|.| .+++.++.+++++.+
T Consensus 268 flP~t~IaGiyGMNf~~mP~l~~~~gy---~~~l~~m~~i~~~~~ 309 (318)
T TIGR00383 268 FIPLTFIAGIYGMNFKFMPELNWKYGY---PAVLIVMAVIALGPL 309 (318)
T ss_pred HHHHHHHHHHHhCCcccCccccchhHH---HHHHHHHHHHHHHHH
Confidence 456788888999999999999977754 555555555555433
No 4
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=56.65 E-value=15 Score=27.38 Aligned_cols=28 Identities=4% Similarity=0.080 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc-cccCCCCC
Q 029017 167 FQIAFVVLAGLTFVYYAAFG-WRRRKPSG 194 (200)
Q Consensus 167 f~y~~l~~s~Ls~i~~~~~~-~~~~~~~~ 194 (200)
..++.+.+..++.+|...|- +||||+.+
T Consensus 13 L~ls~i~V~~~~~~wi~~Ra~~~~DKT~~ 41 (72)
T PF13268_consen 13 LLLSSILVLLVSGIWILWRALRKKDKTAK 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 36778888888999887642 44444443
No 5
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=45.97 E-value=2.5e+02 Score=28.73 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhHhhhhhcceeEee
Q 029017 22 KLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIH 101 (200)
Q Consensus 22 ~L~lGii~~iiSi~WilHIily~l~~~p~~pfLN~~fi~Ld~~~~llgt~~ya~f~~YLl~c~ikG~~k~Glrl~~f~ih 101 (200)
+..++|+-.++|.+-++-=.=....++-+++|++-+....++-. .--+.=..+..|+-.|+-+--++++.+ ..|
T Consensus 364 ~~~~~i~~~~Ms~~Vl~sE~tf~~~~~~Lsl~a~vi~~~~~~~~--~i~~~af~~l~Y~~~ctY~sl~r~~~~----~yY 437 (673)
T KOG2296|consen 364 QMVLAIVMAIMSAAILLSEATFLLSKYDLSLFAIVISSAKSDEL--TVQFVAFVPLVYMCYCTYYSLFRIQFL----MYY 437 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeeccchHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh
Confidence 34555555555544333222334456668888888888876431 111122345668888888888898888 556
Q ss_pred eeccC-CchhHHHHHHHHHHHHHHHHHH
Q 029017 102 PMKWG-ATLMNSFLFNVGLILLCSISVI 128 (200)
Q Consensus 102 PMk~~-~T~mnSfLFN~~LiLl~s~avi 128 (200)
-+.+| .|=-+|+||-.+|++=.+.|++
T Consensus 438 ~L~P~~qTn~~SLlfs~~llCRLTPPiC 465 (673)
T KOG2296|consen 438 SLTPRRQTNEVSLLFSASLLCRLTPPIC 465 (673)
T ss_pred eeccccccchHHHHHHHHHHHhcCchhh
Confidence 66666 8889999999998877666653
No 6
>PHA02132 hypothetical protein
Probab=42.68 E-value=33 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHH--HHHHhccccCCCCCccc
Q 029017 168 QIAFVVLAGLTFV--YYAAFGWRRRKPSGKFQ 197 (200)
Q Consensus 168 ~y~~l~~s~Ls~i--~~~~~~~~~~~~~~~~~ 197 (200)
||...++.+--++ +.+...||++||+++.-
T Consensus 13 qys~ia~~vyvl~hg~affdewr~~~pdsk~p 44 (86)
T PHA02132 13 QYSIIAVMVYVLIHGFAFFDEWRQKRPDSKMP 44 (86)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHcCCCCccCc
Confidence 4455554444444 45557899999998764
No 7
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=42.19 E-value=63 Score=29.06 Aligned_cols=45 Identities=20% Similarity=0.519 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHHHHHHh
Q 029017 138 YAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAF 185 (200)
Q Consensus 138 Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i~~~~~ 185 (200)
.++-|-+..+||-.++++.+.++=|-| .+++..+.+++++.+...
T Consensus 272 flPpTlIagiyGMNf~~mPel~~~~Gy---~~~l~~m~~~~~~~~~~f 316 (322)
T COG0598 272 FLPPTLITGFYGMNFKGMPELDWPYGY---PIALILMLLLALLLYLYF 316 (322)
T ss_pred HHhhHHHHcccccCCCCCcCCCCcccH---HHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999987754 555555555555544433
No 8
>PRK09546 zntB zinc transporter; Reviewed
Probab=42.12 E-value=82 Score=28.12 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHH
Q 029017 139 AQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180 (200)
Q Consensus 139 a~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i 180 (200)
.+-|-+..+||-.+++|.+.++=|.| .+++.++.++++.
T Consensus 275 lPlT~IaGiyGMNf~~mPel~~~~gy---~~~l~im~~i~~~ 313 (324)
T PRK09546 275 LPTTFLTGLFGVNLGGIPGGGWPFGF---SIFCLLLVVLIGG 313 (324)
T ss_pred HHHHHHHhhhccccCCCCCcCCcchH---HHHHHHHHHHHHH
Confidence 37789999999999999999876644 4444444444443
No 9
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=42.01 E-value=23 Score=31.51 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-Hhhh
Q 029017 34 VAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGA-MMLG 92 (200)
Q Consensus 34 i~WilHIily~l~~~p~~pfLN~~fi~Ld~~~~llgt~~ya~f~~YLl~c~ikG~-~k~G 92 (200)
|.|++-|++|++.+ +++|.-++..+-+.|..+|.-+|. +++-
T Consensus 47 I~kvL~IliYcVTg-----------------~sllsli~VtvaalYsSC~~~pg~~~~f~ 89 (235)
T PF11359_consen 47 IMKVLAILIYCVTG-----------------FSLLSLIVVTVAALYSSCCRRPGRLTRFD 89 (235)
T ss_pred HHHHHhhheeeehh-----------------HHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence 56999999999887 578888888999999999999997 5544
No 10
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=36.31 E-value=36 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC---CCCcccc
Q 029017 168 QIAFVVLAGLTFVYYAAFGWRRRK---PSGKFQL 198 (200)
Q Consensus 168 ~y~~l~~s~Ls~i~~~~~~~~~~~---~~~~~~~ 198 (200)
.|.+.+++.+.+.|+.+|..|-|| +.++|-+
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgv 131 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGV 131 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceeecc
Confidence 588899999999998886544333 3345543
No 11
>COG5488 Integral membrane protein [Function unknown]
Probab=34.52 E-value=52 Score=27.91 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCCcchHH
Q 029017 24 VLGILGFIVSVAWVAHIVIYLLIN-PPLHPFLN 55 (200)
Q Consensus 24 ~lGii~~iiSi~WilHIily~l~~-~p~~pfLN 55 (200)
-.|++-.++++.|++|.+.+..++ +|+.||+.
T Consensus 30 gf~~lm~~~~~~~~~v~~ff~~igAwpV~~FfG 62 (164)
T COG5488 30 GFGVLMLALGILSLVVAIFFLVIGAWPVLPFFG 62 (164)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCceeccch
Confidence 467777888999999999999987 68888853
No 12
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=32.60 E-value=31 Score=28.33 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Q 029017 123 CSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKF 196 (200)
Q Consensus 123 ~s~aviQFc~~aF~~Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i~~~~~~~~~~~~~~~~ 196 (200)
=++++.-|-++-+++|.+.++-.+=.......-.+-++-+-|=.++..|+++.+++++.--+|..|++++++.+
T Consensus 5 N~Ta~~~~L~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK~E~s~DPy 78 (129)
T PF02060_consen 5 NSTALHPFLSKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKKREHSHDPY 78 (129)
T ss_dssp HHHHH-TTHHHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH-----TT
T ss_pred cchHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhhhccccChH
Confidence 35677777888888887766332222222222233333332233344444444444444444666666655544
No 13
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=30.98 E-value=1.1e+02 Score=28.04 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHH
Q 029017 130 FCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180 (200)
Q Consensus 130 Fc~~aF~~Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i 180 (200)
.-|..=.-..+-|-+..+||-.++++.+.++=|-| .+++.++.++++.
T Consensus 258 ~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~---~~~l~~~~~~~~~ 305 (316)
T PRK11085 258 IFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGY---PGAIILMILAGLA 305 (316)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHH---HHHHHHHHHHHHH
Confidence 33333345788899999999999999998876643 5555555555543
No 14
>PRK10726 hypothetical protein; Provisional
Probab=25.57 E-value=2.8e+02 Score=22.08 Aligned_cols=84 Identities=25% Similarity=0.359 Sum_probs=45.2
Q ss_pred ccccccchhhhhhHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC----CCcchHHHHHHHh-hh--hhHHHHHHH
Q 029017 3 PQGEKAETSWALTVL--GYLA-KLVLGILGFIVSVAWVAHIVIYLLINP----PLHPFLNEVFIKL-DD--LWGLLGTAA 72 (200)
Q Consensus 3 ~~~~~~~~~~~~~~l--~~y~-~L~lGii~~iiSi~WilHIily~l~~~----p~~pfLN~~fi~L-d~--~~~llgt~~ 72 (200)
+|+|++|+.|....- +... .|.+||=..+=--. .+-..+|..|=. |++=...-.+..| .+ .+.+++|..
T Consensus 11 ~~~~~de~s~sl~Gav~GFv~ywlA~aiPfl~YG~n-TlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~~s~l~t~l 89 (105)
T PRK10726 11 SQTEDEETTWSLPGAVVGFVSWLLALAIPFLIYGSN-TLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKLLYSILFTLL 89 (105)
T ss_pred ccccccCcccccchHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 577888888876321 1111 24444444443333 444555555421 3333333333333 22 267788887
Q ss_pred HHHHHHHHHHHHHhh
Q 029017 73 FAFFCFYLLLAVIAG 87 (200)
Q Consensus 73 ya~f~~YLl~c~ikG 87 (200)
--...|.++++-+.|
T Consensus 90 ~V~~lFwllF~~L~G 104 (105)
T PRK10726 90 TVGCLFWLLFSWLLG 104 (105)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777788888887765
No 15
>KOG0380 consensus Sterol O-acyltransferase/Diacylglycerol O-acyltransferase [Lipid transport and metabolism]
Probab=23.28 E-value=6.6e+02 Score=25.11 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=61.4
Q ss_pred CccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 029017 2 YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLL 81 (200)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~y~~L~lGii~~iiSi~WilHIily~l~~~p~~pfLN~~fi~Ld~~~~llgt~~ya~f~~YLl 81 (200)
||+-. .-.|+| ++...+++++++.-.....=|..|=.+.+..+||..+..--...-+....|- .++ -+..||++
T Consensus 297 yPRt~--~iR~~y-vl~k~~e~~g~~~l~~~i~~q~~vP~~~n~~~~~~~~~~~~~~~ll~l~iP~--il~-~Ll~FY~i 370 (523)
T KOG0380|consen 297 YPRTA--RIRWRY-VLEKFLELLGCIFLMVFIFQQWMVPVARNSKDPPFSDASRLIERLLKLMIPG--ILI-WLLFFYLI 370 (523)
T ss_pred CCccc--hhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccchHHHHHHHHHHHhhhH--HHH-HHHHHHHH
Confidence 45543 467888 8888999999888888888899999999999988773333333334444443 344 45567777
Q ss_pred HHHHhhh----Hhhhhhcce
Q 029017 82 LAVIAGA----MMLGLRLVF 97 (200)
Q Consensus 82 ~c~ikG~----~k~Glrl~~ 97 (200)
+=+.=-+ .+||=|-++
T Consensus 371 fh~~LNa~AEl~rFaDR~FY 390 (523)
T KOG0380|consen 371 FHCWLNAVAELTRFADREFY 390 (523)
T ss_pred HHHHHHHHHHHHHhhHHhHH
Confidence 6544333 467877665
No 16
>PF13073 DUF3937: Protein of unknown function (DUF3937)
Probab=23.25 E-value=1.3e+02 Score=22.17 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 029017 112 SFLFNVGLILLCSISVIQFCSTAFGYYAQATA 143 (200)
Q Consensus 112 SfLFN~~LiLl~s~aviQFc~~aF~~Ya~~T~ 143 (200)
.=|--.+|-|..+.+|+||+..-|+.|-.+.+
T Consensus 5 kklir~gltlfv~L~vi~FtigYfq~Yl~saa 36 (73)
T PF13073_consen 5 KKLIRFGLTLFVFLSVIDFTIGYFQTYLESAA 36 (73)
T ss_pred chhhhhhhHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 33556788899999999999999999876543
No 17
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=22.63 E-value=3.6e+02 Score=21.07 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029017 121 LLCSISVIQFCSTAF 135 (200)
Q Consensus 121 Ll~s~aviQFc~~aF 135 (200)
|..|.++-||.+|.+
T Consensus 34 L~~slgv~Q~~~kvi 48 (97)
T PF08611_consen 34 LTASLGVGQFFIKVI 48 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666554
No 18
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=21.84 E-value=1.7e+02 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 029017 167 FQIAFVVLAGLTFVYYAAFGW 187 (200)
Q Consensus 167 f~y~~l~~s~Ls~i~~~~~~~ 187 (200)
+.|.++.++.++.++..+.=+
T Consensus 4 ~vY~~ll~~tlgilffAI~FR 24 (29)
T PF01405_consen 4 LVYTFLLIGTLGILFFAIFFR 24 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHhhhhcc
Confidence 689999999999998887533
No 19
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=20.83 E-value=38 Score=22.86 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHH
Q 029017 164 YNVFQIAFVVLAGLT 178 (200)
Q Consensus 164 ~nvf~y~~l~~s~Ls 178 (200)
|++|+++.|++|..|
T Consensus 4 YsvfvFaiLaissvs 18 (43)
T PF10917_consen 4 YSVFVFAILAISSVS 18 (43)
T ss_pred eeehHHHHhhhhccc
Confidence 589999999998877
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.43 E-value=81 Score=25.39 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=3.0
Q ss_pred HHHHhccccC
Q 029017 181 YYAAFGWRRR 190 (200)
Q Consensus 181 ~~~~~~~~~~ 190 (200)
++.+|+.|||
T Consensus 85 ~y~irR~~Kk 94 (122)
T PF01102_consen 85 SYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHS--
T ss_pred HHHHHHHhcc
Confidence 3333433333
Done!