Query 029017
Match_columns 200
No_of_seqs 63 out of 65
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rh5_B Preprotein translocase 55.4 21 0.00071 25.4 4.9 32 18-52 41-72 (74)
2 4ev6_A Magnesium transport pro 50.6 18 0.00062 31.1 4.8 43 137-182 288-330 (339)
3 2iub_A CORA, divalent cation t 45.1 15 0.00052 32.0 3.4 43 138-183 313-355 (363)
4 2ks1_B Epidermal growth factor 32.5 49 0.0017 21.3 3.5 8 173-180 23-30 (44)
5 4ain_A Glycine betaine transpo 19.7 1.6E+02 0.0053 28.0 5.7 53 40-93 33-89 (539)
6 2zw3_A GAP junction beta-2 pro 18.0 96 0.0033 26.2 3.5 19 163-181 187-205 (226)
7 2k21_A Potassium voltage-gated 16.2 34 0.0012 27.1 0.3 79 118-196 9-87 (138)
8 3arc_T Photosystem II reaction 15.4 2.1E+02 0.0073 17.3 4.0 22 167-188 4-25 (32)
9 2rdd_B UPF0092 membrane protei 13.4 24 0.00081 21.6 -1.1 31 170-200 6-36 (37)
10 2lxr_A NADH dehydrogenase I su 11.8 18 0.00063 26.1 -2.2 13 104-116 52-64 (76)
No 1
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=55.38 E-value=21 Score=25.44 Aligned_cols=32 Identities=34% Similarity=0.637 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 029017 18 GYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHP 52 (200)
Q Consensus 18 ~~y~~L~lGii~~iiSi~WilHIily~l~~~p~~p 52 (200)
.-.+-+++|+++.++-+ +|+.+.++++||..|
T Consensus 41 ~~iG~~imG~IGfiIkl---i~ipIn~ii~~~~~~ 72 (74)
T 1rh5_B 41 TALGISLLGIIGYIIHV---PATYIKGILKPPTTP 72 (74)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHhcccCCCCCC
Confidence 34456677777777665 799999999998877
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=50.64 E-value=18 Score=31.12 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHHHH
Q 029017 137 YYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYY 182 (200)
Q Consensus 137 ~Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i~~ 182 (200)
-.++-|-+..+||-.++++.+.++=|.| .+++.++.+++++.+
T Consensus 288 IflP~T~IaGiyGMNf~~mPel~~~~gy---~~~l~~m~~~~~~~~ 330 (339)
T 4ev6_A 288 IFAVPMWITGIYGMNFSYLPLANNPQGF---WLVMALMVVIIMIFV 330 (339)
T ss_dssp HSSHHHHHHHHTTCCCSCCTTSSCTTHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcCCCCCCccCchHH---HHHHHHHHHHHHHHH
Confidence 3678899999999999999999876644 344444444444433
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=45.13 E-value=15 Score=32.00 Aligned_cols=43 Identities=14% Similarity=0.414 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHHHHH
Q 029017 138 YAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYA 183 (200)
Q Consensus 138 Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i~~~ 183 (200)
.++-|-+..+||-.++++.+.++-|.| .+++.++.++++..+.
T Consensus 313 flP~T~IaGiyGMNf~~mPel~~~~Gy---~~~l~~m~~i~~~~~~ 355 (363)
T 2iub_A 313 FMPLTFIAGIYGMNFEYMPELRWKWGY---PVVLAVMGVIAVIMVV 355 (363)
T ss_dssp HHHHHHHTTSCC--------------C---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcccCCCCCcccCcHHH---HHHHHHHHHHHHHHHH
Confidence 467888999999999999999987765 4444444444444333
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.48 E-value=49 Score=21.28 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 029017 173 VLAGLTFV 180 (200)
Q Consensus 173 ~~s~Ls~i 180 (200)
++.++.+.
T Consensus 23 ~~~ii~~~ 30 (44)
T 2ks1_B 23 LLLVVALG 30 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 5
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=19.68 E-value=1.6e+02 Score=27.96 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=38.3
Q ss_pred HHHHHhcCC-CCcchHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 029017 40 IVIYLLINP-PLHPFLNEVFIKLDD---LWGLLGTAAFAFFCFYLLLAVIAGAMMLGL 93 (200)
Q Consensus 40 Iily~l~~~-p~~pfLN~~fi~Ld~---~~~llgt~~ya~f~~YLl~c~ikG~~k~Gl 93 (200)
.++..+.+| .....+|+.+.+.-+ |+=++.+..+-+|+.||.+ +--|++|+|.
T Consensus 33 ~v~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~f~l~laf-S~~G~IrLG~ 89 (539)
T 4ain_A 33 TVVWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIVVIAA-SKFGTIRLGR 89 (539)
T ss_dssp HHHHHHTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SGGGSCBSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhee-cCCCceecCC
Confidence 344455554 456788888888743 3456777888889999865 6779999996
No 6
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=17.95 E-value=96 Score=26.17 Aligned_cols=19 Identities=16% Similarity=0.530 Sum_probs=16.6
Q ss_pred ehhhHHHHHHHHHHHHHHH
Q 029017 163 KYNVFQIAFVVLAGLTFVY 181 (200)
Q Consensus 163 ~~nvf~y~~l~~s~Ls~i~ 181 (200)
+-++|++.++++|++++++
T Consensus 187 EKtifl~fM~~vs~lsi~L 205 (226)
T 2zw3_A 187 EKTVFTVFMIAVSGICILL 205 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999983
No 7
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=16.22 E-value=34 Score=27.13 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Q 029017 118 GLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKF 196 (200)
Q Consensus 118 ~LiLl~s~aviQFc~~aF~~Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i~~~~~~~~~~~~~~~~ 196 (200)
+++|--++++.-|-++-..+|.++..-.+=....-..=.+=++.|-|=.++..|+++..+++++--+|.+|++++.+-+
T Consensus 9 ~~~~~n~t~~~~~L~~l~~e~~~~g~n~S~la~r~~~~~~~~~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s~DPy 87 (138)
T 2k21_A 9 GMILSNTTAVTPFLTKLWQETVQQGGNMSGLARRSPRSGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPF 87 (138)
T ss_dssp -CTTHHHHHHCTTHHHHHHHHHHTCCTTSSGGGSCSCCTTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTT
T ss_pred ceeecCchHHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHhHhhhccccCCcH
Confidence 3455556777777788888886654211100111111122223332233333444444444444444656666555444
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=15.35 E-value=2.1e+02 Score=17.31 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 029017 167 FQIAFVVLAGLTFVYYAAFGWR 188 (200)
Q Consensus 167 f~y~~l~~s~Ls~i~~~~~~~~ 188 (200)
..|.++.++.|+.++.++.=++
T Consensus 4 ~vYt~ll~~tlgiiFFAI~FRe 25 (32)
T 3arc_T 4 ITYVFIFACIIALFFFAIFFRE 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhhhhcC
Confidence 5789999999999988775333
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=13.40 E-value=24 Score=21.55 Aligned_cols=31 Identities=6% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCccccCC
Q 029017 170 AFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS 200 (200)
Q Consensus 170 ~~l~~s~Ls~i~~~~~~~~~~~~~~~~~~~~ 200 (200)
.+..+..+...|++.-++.|||.++..+..+
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m~~ 36 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKEHKKLMD 36 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
No 10
>2lxr_A NADH dehydrogenase I subunit E; HP1264, oxidoreductase; NMR {Helicobacter pylori}
Probab=11.83 E-value=18 Score=26.06 Aligned_cols=13 Identities=46% Similarity=0.659 Sum_probs=0.0
Q ss_pred ccCCchhHHHHHH
Q 029017 104 KWGATLMNSFLFN 116 (200)
Q Consensus 104 k~~~T~mnSfLFN 116 (200)
+.|.|+|||+=||
T Consensus 52 ~~g~eLmNSLkFN 64 (76)
T 2lxr_A 52 SKGHELLNSLRFN 64 (76)
T ss_dssp TTTCEECSCCCTT
T ss_pred HcChhHHhhcccc
Done!