Query 029017
Match_columns 200
No_of_seqs 63 out of 65
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 09:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029017.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029017hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 32.9 7.4 0.00054 24.5 1.2 42 138-182 16-57 (64)
2 d2f6sa1 a.265.1.1 (A:1-177) Ce 10.6 41 0.003 24.7 1.2 25 99-123 94-118 (177)
3 d2g03a1 a.265.1.1 (A:11-187) H 9.6 47 0.0034 24.4 1.2 27 97-123 93-119 (177)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 8.1 1.7E+02 0.012 15.5 3.6 21 23-43 2-22 (27)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 7.4 1.3E+02 0.0096 19.7 2.7 8 185-192 53-60 (100)
6 d1v54d_ f.23.1.1 (D:) Mitochon 7.2 3.1E+02 0.023 19.7 5.0 34 22-55 76-110 (144)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 5.0 1.1E+02 0.0077 22.9 1.1 10 171-180 416-425 (447)
8 d2axti1 f.23.37.1 (I:1-35) Pho 4.5 3.4E+02 0.024 15.2 4.2 29 166-194 6-34 (35)
9 d1vbva1 b.34.17.1 (A:3-97) Hyp 4.1 1.8E+02 0.013 19.4 1.7 15 48-62 79-93 (95)
10 d1fnoa3 d.58.19.1 (A:208-320) 3.7 1E+02 0.0075 21.5 0.0 16 99-114 14-29 (113)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=32.87 E-value=7.4 Score=24.51 Aligned_cols=42 Identities=14% Similarity=0.423 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHHHHHHHHHHH
Q 029017 138 YAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYY 182 (200)
Q Consensus 138 Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~~s~Ls~i~~ 182 (200)
+.+.|-+.++||-.++++.+.++-+.+ -++..++.+++.+..
T Consensus 16 flP~t~i~gifGMN~~~~P~~~~~~~~---~~~~~~~~~~~~~~~ 57 (64)
T d2iuba2 16 FMPLTFIAGIYGMNFEYMPELRWKWGY---PVVLAVMGVIAVIMV 57 (64)
T ss_dssp HHHHHHHTTSCC--------------C---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCCCCCccHHH---HHHHHHHHHHHHHHH
Confidence 567888889999888888887765433 333333444444333
No 2
>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic {Helicobacter pylori [TaxId: 210]}
Probab=10.61 E-value=41 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.1
Q ss_pred EeeeeccCCchhHHHHHHHHHHHHH
Q 029017 99 TIHPMKWGATLMNSFLFNVGLILLC 123 (200)
Q Consensus 99 ~ihPMk~~~T~mnSfLFN~~LiLl~ 123 (200)
.|||.+.|++-+..+++|..|.--.
T Consensus 94 ~IHPF~DGNGRt~Rl~~~~~l~~~G 118 (177)
T d2f6sa1 94 IAHPFLEGNGRATRIWLDLLLKKEL 118 (177)
T ss_dssp HHCCSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCcHHHHHHHHHHHHHHcC
Confidence 6999999999999999998776643
No 3
>d2g03a1 a.265.1.1 (A:11-187) Hypothetical protein NMA0004 {Neisseria meningitidis [TaxId: 487]}
Probab=9.62 E-value=47 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=23.0
Q ss_pred eeEeeeeccCCchhHHHHHHHHHHHHH
Q 029017 97 FITIHPMKWGATLMNSFLFNVGLILLC 123 (200)
Q Consensus 97 ~f~ihPMk~~~T~mnSfLFN~~LiLl~ 123 (200)
|-.|||.+.|++-+..++.|..|+--.
T Consensus 93 f~~IHPF~DGNGRt~Rll~~~~L~~~g 119 (177)
T d2g03a1 93 MNIAHPFLEGNGRSTRIWLDLVLKKNL 119 (177)
T ss_dssp HHHHCCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HhhccCccCCcHHHHHHHHHHHHHHhC
Confidence 348999999999999999998887543
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.07 E-value=1.7e+02 Score=15.48 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029017 23 LVLGILGFIVSVAWVAHIVIY 43 (200)
Q Consensus 23 L~lGii~~iiSi~WilHIily 43 (200)
+.+|-+++++-..|-+-++++
T Consensus 2 ~~lgwv~llvvftwsiamvvw 22 (27)
T d2e74h1 2 DVLGWVALLVVFTWSIAMVVW 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHhhheeeeEEE
Confidence 467888888888998877765
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.42 E-value=1.3e+02 Score=19.68 Aligned_cols=8 Identities=13% Similarity=-0.047 Sum_probs=3.3
Q ss_pred hccccCCC
Q 029017 185 FGWRRRKP 192 (200)
Q Consensus 185 ~~~~~~~~ 192 (200)
+.++||.+
T Consensus 53 ~~r~~~~~ 60 (100)
T d3dtub2 53 RFHEKRNK 60 (100)
T ss_dssp HHBTTTCC
T ss_pred hhhccCCC
Confidence 43444433
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.17 E-value=3.1e+02 Score=19.66 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcchHH
Q 029017 22 KLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLN 55 (200)
Q Consensus 22 ~L~lGii~~iiSi~WilHIily~l~~~-p~~pfLN 55 (200)
|.++|.+.+.+++.=.+++..-....| |++.|=.
T Consensus 76 K~v~g~~~~~i~~s~~i~~~~r~~v~p~~P~T~~~ 110 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEE 110 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCH
Confidence 556676777777776666666665544 4666643
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.96 E-value=1.1e+02 Score=22.92 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 029017 171 FVVLAGLTFV 180 (200)
Q Consensus 171 ~l~~s~Ls~i 180 (200)
+.+.++++.+
T Consensus 416 ~~~~~~~~~~ 425 (447)
T d1pw4a_ 416 MIGGSILAVI 425 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.49 E-value=3.4e+02 Score=15.19 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 029017 166 VFQIAFVVLAGLTFVYYAAFGWRRRKPSG 194 (200)
Q Consensus 166 vf~y~~l~~s~Ls~i~~~~~~~~~~~~~~ 194 (200)
+++|.....-+--+++-+.-+-+.|+|.+
T Consensus 6 i~Vy~vV~fFv~lFiFGFLSnDP~RnP~r 34 (35)
T d2axti1 6 ITVYIVVTFFVLLFVFGFLSGDPARNPKR 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCSSCC
T ss_pred EehhhHHHHHHHHHHHhhccCCCCCCCCC
Confidence 34554433333333333334445555544
No 9
>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]}
Probab=4.12 E-value=1.8e+02 Score=19.42 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.8
Q ss_pred CCCcchHHHHHHHhh
Q 029017 48 PPLHPFLNEVFIKLD 62 (200)
Q Consensus 48 ~p~~pfLN~~fi~Ld 62 (200)
|+.||-+|++|..++
T Consensus 79 ~i~HP~i~el~e~~~ 93 (95)
T d1vbva1 79 HPEQPSMDELAQTIR 93 (95)
T ss_dssp CTTCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHhh
Confidence 689999999998764
No 10
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]}
Probab=3.70 E-value=1e+02 Score=21.54 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=14.6
Q ss_pred EeeeeccCCchhHHHH
Q 029017 99 TIHPMKWGATLMNSFL 114 (200)
Q Consensus 99 ~ihPMk~~~T~mnSfL 114 (200)
.+||+.-.+.|.|+.+
T Consensus 14 svHPG~AKgkMvNA~~ 29 (113)
T d1fnoa3 14 NVHPGTAKGVMVNALS 29 (113)
T ss_dssp CCCGGGCTTTCBCHHH
T ss_pred EeCCcchhhHHHhHHH
Confidence 7899999999999976
Done!