Query 029018
Match_columns 200
No_of_seqs 223 out of 553
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.2 0.0095 3.3E-07 44.3 6.1 55 115-194 7-61 (89)
2 1wmh_B Partitioning defective- 96.2 0.01 3.6E-07 44.0 6.2 57 114-194 6-62 (86)
3 2ktr_A Sequestosome-1; autopha 95.9 0.017 5.8E-07 45.0 6.4 67 105-194 11-92 (117)
4 2kkc_A Sequestosome-1; P62, PB 95.8 0.018 6E-07 43.8 5.8 59 114-195 5-78 (102)
5 1q1o_A Cell division control p 89.4 0.97 3.3E-05 34.1 6.4 64 114-196 5-74 (98)
6 1oey_J P40-PHOX, neutrophil cy 83.8 1.6 5.5E-05 33.4 4.9 38 131-194 28-65 (107)
7 2bkf_A Zinc-finger protein NBR 79.5 4.9 0.00017 29.7 6.1 53 116-194 8-60 (87)
8 1wj6_A KIAA0049 protein, RSGI 76.1 5.4 0.00018 30.3 5.5 53 115-193 15-67 (101)
9 1pqs_A Cell division control p 75.6 2.5 8.5E-05 30.3 3.4 48 130-196 6-53 (77)
10 1e8p_A Endoglucanase, dockerin 57.1 3.3 0.00011 27.3 0.8 13 181-193 20-32 (46)
11 1oey_A P67-PHOX, neutrophil cy 49.8 26 0.0009 25.3 4.7 55 116-197 7-62 (83)
12 3o27_A Putative uncharacterize 44.0 15 0.00051 26.0 2.6 22 173-194 38-59 (68)
13 2npt_A Dual specificity mitoge 33.7 79 0.0027 23.8 5.2 56 115-195 15-71 (106)
14 2j4m_A Endoglucanase 45A; dock 27.6 13 0.00045 28.1 0.1 12 181-192 21-32 (100)
15 3brc_A Conserved protein of un 26.1 17 0.00058 29.4 0.5 14 10-23 96-109 (156)
16 2i1s_A Hypothetical protein; m 26.0 54 0.0018 26.1 3.5 36 115-150 9-46 (188)
17 2kvv_A Putative excisionase; D 24.3 30 0.001 25.0 1.4 46 102-150 27-72 (78)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.23 E-value=0.0095 Score=44.26 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=42.9
Q ss_pred ceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018 115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV 194 (200)
Q Consensus 115 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV 194 (200)
+=|||+-.|.-+ -+.+..--+|++|...|.++|... .+..+++.|.|.|||+.-+
T Consensus 7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCEEC
T ss_pred EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcccc
Confidence 468999999844 444455679999999999999841 1457899999999998654
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.23 E-value=0.01 Score=44.00 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=44.1
Q ss_pred CceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEe
Q 029018 114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML 193 (200)
Q Consensus 114 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwML 193 (200)
..-||...|..--=-.||-....+|++|..-|+++|.. ...+|++.|.|.|||++-
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLlp 61 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLP 61 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEE
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEee
Confidence 34588888887433355656778999999999999974 134689999999999975
Q ss_pred c
Q 029018 194 V 194 (200)
Q Consensus 194 V 194 (200)
+
T Consensus 62 I 62 (86)
T 1wmh_B 62 L 62 (86)
T ss_dssp C
T ss_pred e
Confidence 4
No 3
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.91 E-value=0.017 Score=45.01 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=43.7
Q ss_pred cchhhhccCCceeEEEEeCc----cccceeecC-----------CCCCHHHHHHHHHHhhcccccCCcCCcCccccchhh
Q 029018 105 YRKNAMAETAAFVKVCMDGA----PYLRKVDLK-----------TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNES 169 (200)
Q Consensus 105 ~Rkn~~~~~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~ 169 (200)
|--|.++...+-||++..|. .=-|++-|. .-.+|++|...++++|..
T Consensus 11 ~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~------------------ 72 (117)
T 2ktr_A 11 YEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA------------------ 72 (117)
T ss_dssp ---------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT------------------
T ss_pred eeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc------------------
Confidence 34445555678899999752 233555554 135999999999999964
Q ss_pred hhhccCCCCCeEEEEEeCCCCEEec
Q 029018 170 KLMDLLNSSDYVPTYEDKDGDWMLV 194 (200)
Q Consensus 170 ~l~d~~~~seyvltYeDkdGDwMLV 194 (200)
+.+..|.+.|.|.|||+.-+
T Consensus 73 -----L~~~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 73 -----LRPGGFQAHYRAERGDLVAF 92 (117)
T ss_dssp -----SCSSCEEEEEECTTCCEEEE
T ss_pred -----cCCCcEEEEEECCCCCEEEe
Confidence 12457999999999998754
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.77 E-value=0.018 Score=43.80 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=43.4
Q ss_pred CceeEEEEeCc----cccceeecCC-----------CCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCC
Q 029018 114 AAFVKVCMDGA----PYLRKVDLKT-----------YKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSS 178 (200)
Q Consensus 114 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~s 178 (200)
++-||++..|. .=-|++-|.. ..+|++|...++++|.. +.+.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-----------------------l~~~ 61 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-----------------------LRPG 61 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-----------------------SCSS
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-----------------------cCCC
Confidence 45689998762 2446655532 24899999999999974 1245
Q ss_pred CeEEEEEeCCCCEEecc
Q 029018 179 DYVPTYEDKDGDWMLVG 195 (200)
Q Consensus 179 eyvltYeDkdGDwMLVG 195 (200)
.|.+.|.|.|||+.-+-
T Consensus 62 ~f~l~Y~DedGDlItiS 78 (102)
T 2kkc_A 62 GFQAHYRAERGDLVAFS 78 (102)
T ss_dssp CEEEEEECTTCCEEEEC
T ss_pred cEEEEEECCCCCEEEec
Confidence 79999999999987553
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=89.42 E-value=0.97 Score=34.06 Aligned_cols=64 Identities=16% Similarity=0.336 Sum_probs=45.7
Q ss_pred CceeEEEEeCc------cccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeC
Q 029018 114 AAFVKVCMDGA------PYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDK 187 (200)
Q Consensus 114 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDk 187 (200)
+.-|||+-+.. .=.|.|=+..--+|++|...+.+-|..+. . + + . .....+-|+|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~----~------------~-i-~~~~klkYkDE 65 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-N----N------------N-I-SPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-S----S------------C-C-CCCCCEEEECS
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-c----c------------c-c-cceeEEEEEcC
Confidence 35688887743 12366667788899999999999998631 0 0 0 0 12468999999
Q ss_pred CCCEEeccc
Q 029018 188 DGDWMLVGD 196 (200)
Q Consensus 188 dGDwMLVGD 196 (200)
|||+...++
T Consensus 66 dGD~Vtl~s 74 (98)
T 1q1o_A 66 DGDFVVLGS 74 (98)
T ss_dssp SSCEEEECS
T ss_pred CCCEEEEcC
Confidence 999988775
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=83.83 E-value=1.6 Score=33.43 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=31.5
Q ss_pred ecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018 131 DLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV 194 (200)
Q Consensus 131 DL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV 194 (200)
||+.--.|.+|..-..+-|... +-+|-|.|.|||+.-+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIri 65 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRL 65 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEEC
T ss_pred ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEE
Confidence 6778889999999999999741 3478899999999755
No 7
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=79.46 E-value=4.9 Score=29.67 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=39.5
Q ss_pred eeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEec
Q 029018 116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV 194 (200)
Q Consensus 116 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLV 194 (200)
-+||.--|...=--|.-..--++++|-..+..+|+. +.++|.|-|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L--------------------------~~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEEcCCCCEEEE
Confidence 478888888544446444467899988888888864 15799999999997543
No 8
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.06 E-value=5.4 Score=30.26 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=40.2
Q ss_pred ceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEe
Q 029018 115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML 193 (200)
Q Consensus 115 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwML 193 (200)
.-+||.--|...=--|.-..--++++|-..+..+|+. +.++|.|-|.|||-.-
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L--------------------------~~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVS 67 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC--------------------------SSBCCEEECTTSCEEC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEecCCCCEEE
Confidence 3489999999655457545567899998888888864 1468999999999754
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=75.64 E-value=2.5 Score=30.26 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=33.8
Q ss_pred eecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEeccc
Q 029018 130 VDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD 196 (200)
Q Consensus 130 VDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwMLVGD 196 (200)
|=...--+|++|...+.+-|..+. +.+ ......+-|.|.|||+...++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~~-----~~~--------------~~~~~~lkYkDEdGD~Vti~s 53 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNTH-----NNN--------------ISPITKIKYQDEDGDFVVLGS 53 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTTT-----SSC--------------SCSTTCCEEEETTTEEEECCS
T ss_pred EEeCCCCCHHHHHHHHHHHHcccc-----ccc--------------ccceeEEEEEcCCCCEEEEcC
Confidence 334455689999999999997531 111 013568899999999987765
No 10
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=57.09 E-value=3.3 Score=27.33 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.1
Q ss_pred EEEEEeCCCCEEe
Q 029018 181 VPTYEDKDGDWML 193 (200)
Q Consensus 181 vltYeDkdGDwML 193 (200)
.++|.|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5889999999954
No 11
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=49.78 E-value=26 Score=25.30 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=39.7
Q ss_pred eeEEEEeCccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEe-CCCCEEec
Q 029018 116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYED-KDGDWMLV 194 (200)
Q Consensus 116 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeD-kdGDwMLV 194 (200)
=|||+-. +.-.|....=-+|.+|...|.+=+... + .+-+|.|.| .+|.|++.
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--~----------------------~~~~LsYk~~~s~~~vi~ 59 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--L----------------------EHTKLSYRPRDSNELVPL 59 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--G----------------------GGCCEEECCTTCSSCEEC
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--c----------------------ceeEEEeeCCCCCCeecc
Confidence 4666665 788888888899999999999988741 0 112567887 46777776
Q ss_pred ccC
Q 029018 195 GDV 197 (200)
Q Consensus 195 GDv 197 (200)
+|.
T Consensus 60 ~d~ 62 (83)
T 1oey_A 60 SED 62 (83)
T ss_dssp CTT
T ss_pred ChH
Confidence 664
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=43.99 E-value=15 Score=25.97 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.0
Q ss_pred ccCCCCCeEEEEEeCCCCEEec
Q 029018 173 DLLNSSDYVPTYEDKDGDWMLV 194 (200)
Q Consensus 173 d~~~~seyvltYeDkdGDwMLV 194 (200)
++..+-+|.+++||++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 4445679999999999998875
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=33.66 E-value=79 Score=23.85 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=36.7
Q ss_pred ceeEEEEe-CccccceeecCCCCCHHHHHHHHHHhhcccccCCcCCcCccccchhhhhhccCCCCCeEEEEEeCCCCEEe
Q 029018 115 AFVKVCMD-GAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML 193 (200)
Q Consensus 115 ~~VKV~Md-G~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkdGDwML 193 (200)
.-+.+... |-.+--.||--.+=++.+|+.++.+..-.-| --..-|||.+||..-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-------------------------~TAFeYEDE~gDRIT 69 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-------------------------TTAFEYEDEDGDRIT 69 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-------------------------CSEEEEECTTSCEEE
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-------------------------eeeeeeccccCCeeE
Confidence 34445444 4446666776667789999999988765322 115669999999987
Q ss_pred cc
Q 029018 194 VG 195 (200)
Q Consensus 194 VG 195 (200)
|-
T Consensus 70 VR 71 (106)
T 2npt_A 70 VR 71 (106)
T ss_dssp EC
T ss_pred Ec
Confidence 73
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=27.58 E-value=13 Score=28.06 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=10.5
Q ss_pred EEEEEeCCCCEE
Q 029018 181 VPTYEDKDGDWM 192 (200)
Q Consensus 181 vltYeDkdGDwM 192 (200)
.++|.|.||||=
T Consensus 21 ~V~YtD~dG~WG 32 (100)
T 2j4m_A 21 KVEYTDASGQWG 32 (100)
T ss_dssp CCCEESSSCEEE
T ss_pred eEEEEcCCCccc
Confidence 578999999994
No 15
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.06 E-value=17 Score=29.39 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=9.8
Q ss_pred ccccccccCCCCCC
Q 029018 10 FKETELCLGLPGGG 23 (200)
Q Consensus 10 ~~~TELRLGLPG~~ 23 (200)
|-..-=|||.||++
T Consensus 96 lvIARGRLGvPGSG 109 (156)
T 3brc_A 96 LVIARGRLGVPGSG 109 (156)
T ss_dssp EEEEEEECSSTTSC
T ss_pred EEEEcccccCCCCc
Confidence 33344599999984
No 16
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=26.01 E-value=54 Score=26.10 Aligned_cols=36 Identities=14% Similarity=0.382 Sum_probs=33.5
Q ss_pred ceeEEEEeCc--cccceeecCCCCCHHHHHHHHHHhhc
Q 029018 115 AFVKVCMDGA--PYLRKVDLKTYKSYQELSDALAKMFS 150 (200)
Q Consensus 115 ~~VKV~MdG~--pigRKVDL~~~~sY~eL~~aLe~MF~ 150 (200)
.-+||..+|. +|=|.|.+..--+..+|-.+|+..|+
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 4589999986 79999999999999999999999998
No 17
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=24.30 E-value=30 Score=24.99 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=34.6
Q ss_pred CCccchhhhccCCceeEEEEeCccccceeecCCCCCHHHHHHHHHHhhc
Q 029018 102 VRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFS 150 (200)
Q Consensus 102 Vrs~Rkn~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~ 150 (200)
|+.||+++.-.+.-|++|+-||.|-.+.-. .| +|+++-+=.+.|..
T Consensus 27 IkryR~~~WlEGrhyrrvspdG~p~~~S~~--~Y-N~~~I~~Wie~~~~ 72 (78)
T 2kvv_A 27 IESYRQGAWIEGVHFKRVSPSGEKTLRGTT--WY-NYPEINKFIRDSLE 72 (78)
T ss_dssp HHHHHTTTCCBTTTEEEECSSSSCCTTCEE--EE-EHHHHHHHHHHHHS
T ss_pred HHHHHhchhhheeeeEeeCCCCCCCcCceE--EE-cHHHHHHHHHHHHh
Confidence 578898887778999999999999777666 33 46666666666654
Done!