Query 029020
Match_columns 200
No_of_seqs 128 out of 865
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 5.5E-36 1.9E-40 228.4 15.0 150 35-196 3-152 (153)
2 1x91_A Invertase/pectin methyl 100.0 1.1E-35 3.6E-40 227.1 13.8 150 33-196 3-152 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 1.5E-34 5E-39 220.2 14.2 147 33-194 2-149 (150)
4 3dxr_B Mitochondrial import in 33.8 1.1E+02 0.0036 20.5 5.6 30 97-126 56-85 (95)
5 3cjh_B Mitochondrial import in 32.3 49 0.0017 20.2 3.4 30 96-125 33-62 (64)
6 1r7c_A Genome polyprotein; mem 28.7 34 0.0012 18.1 1.8 12 141-152 16-27 (31)
7 2l7n_A Talin-1; integrin, bund 26.8 2E+02 0.0067 21.4 8.2 87 69-159 77-164 (168)
8 2bsk_B Mitochondrial import in 25.8 84 0.0029 20.6 3.9 31 96-126 42-72 (90)
9 2bsk_A Mitochondrial import in 25.6 87 0.003 20.6 3.9 31 96-126 40-70 (89)
10 3cjh_A Mitochondrial import in 22.4 87 0.003 19.2 3.2 30 97-126 25-54 (64)
11 3dxr_A Mitochondrial import in 21.8 99 0.0034 20.3 3.6 30 97-126 50-79 (89)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=5.5e-36 Score=228.41 Aligned_cols=150 Identities=17% Similarity=0.329 Sum_probs=137.4
Q ss_pred hHHHHccCCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccHHHHHHHHHHH
Q 029020 35 SIFIETSCKSTRYRTVCVQSLLPYAYKIQRSPLQMALEALSVSLSRTKSADSFVSNLVKHKDLKPREQQPIDDCLQLMGD 114 (200)
Q Consensus 35 ~~~v~~~C~~T~~p~~C~~tL~~~~~s~~~d~~~l~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~~al~dC~el~~~ 114 (200)
.+.|+.+|+.|+||++|+++|.++|++..+||++|+++++++++.++..+..++.++.+. ..+|+.+.+|+||.|+|++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-~~~~~~~~al~dC~e~y~~ 81 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-ATDPKLKGRYETCSENYAD 81 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998888999999999999999999999999998764 3578999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHhhhchHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029020 115 SIDRLSKSVQELRGISGANDRDFLWHISNVQTWVSAALTDDDTCLDGLAALDGEVKDSIRTRVSNVAEVTSNALALVNQL 194 (200)
Q Consensus 115 a~~~L~~a~~al~~~~~~~~~~~~~~~~d~~twLSaalt~~~TC~Dgf~~~~~~~~~~v~~~~~~~~~L~snaLaii~~l 194 (200)
++++|++++.++ +.+ +++|+++|||+|++|++||+|||.+.+ .++++|...+.++.+|++|+|+|++.+
T Consensus 82 a~~~L~~a~~~l---~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~~l 150 (153)
T 1xg2_B 82 AIDSLGQAKQFL---TSG-------DYNSLNIYASAAFDGAGTCEDSFEGPP-NIPTQLHQADLKLEDLCDIVLVISNLL 150 (153)
T ss_dssp HHHHHHHHHHHH---HHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSS-CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---HhC-------CHHHHHHHHHHHhcccchHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 532 689999999999999999999998764 467899999999999999999999987
Q ss_pred hh
Q 029020 195 AK 196 (200)
Q Consensus 195 ~~ 196 (200)
..
T Consensus 151 ~~ 152 (153)
T 1xg2_B 151 PG 152 (153)
T ss_dssp C-
T ss_pred cc
Confidence 53
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=1.1e-35 Score=227.11 Aligned_cols=150 Identities=22% Similarity=0.326 Sum_probs=134.9
Q ss_pred chhHHHHccCCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccHHHHHHHHH
Q 029020 33 GDSIFIETSCKSTRYRTVCVQSLLPYAYKIQRSPLQMALEALSVSLSRTKSADSFVSNLVKHKDLKPREQQPIDDCLQLM 112 (200)
Q Consensus 33 ~~~~~v~~~C~~T~~p~~C~~tL~~~~~s~~~d~~~l~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~~al~dC~el~ 112 (200)
++.+.|+.+|+.|+||++|+++| .|.+...||++|+++++++++.++..+..++.++.+.. .+++.+.+|+||.|+|
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y 79 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAYRSCVDEY 79 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 35568899999999999999999 66666789999999999999999999999999987653 5889999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHhhhchHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 029020 113 GDSIDRLSKSVQELRGISGANDRDFLWHISNVQTWVSAALTDDDTCLDGLAALDGEVKDSIRTRVSNVAEVTSNALALVN 192 (200)
Q Consensus 113 ~~a~~~L~~a~~al~~~~~~~~~~~~~~~~d~~twLSaalt~~~TC~Dgf~~~~~~~~~~v~~~~~~~~~L~snaLaii~ 192 (200)
++++++|++++.++ ..+ +++|+++|||+|++|++||+|||++.+ .++++|...+.++.+|++|+|+|++
T Consensus 80 ~~a~~~L~~a~~~l---~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~ 148 (153)
T 1x91_A 80 ESAIGNLEEAFEHL---ASG-------DGMGMNMKVSAALDGADTCLDDVKRLR-SVDSSVVNNSKTIKNLCGIALVISN 148 (153)
T ss_dssp HHHHHHHHHHHHHH---HTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---Hhc-------CHHHHHHHHHHHHccHhHHHHHhccCC-CCcCHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999 533 589999999999999999999998754 5689999999999999999999999
Q ss_pred hhhh
Q 029020 193 QLAK 196 (200)
Q Consensus 193 ~l~~ 196 (200)
.+..
T Consensus 149 ~l~~ 152 (153)
T 1x91_A 149 MLPR 152 (153)
T ss_dssp HSCC
T ss_pred HccC
Confidence 8753
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=1.5e-34 Score=220.18 Aligned_cols=147 Identities=17% Similarity=0.241 Sum_probs=132.9
Q ss_pred chhHHHHccCCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccHHHHHHHHH
Q 029020 33 GDSIFIETSCKSTRYRTVCVQSLLPYAYKIQRSPLQMALEALSVSLSRTKSADSFVSNLVKHKDLKPREQQPIDDCLQLM 112 (200)
Q Consensus 33 ~~~~~v~~~C~~T~~p~~C~~tL~~~~~s~~~d~~~l~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~~~al~dC~el~ 112 (200)
+..++|+.+|+.|+||++|+++|.++|++..+|+.+|+++++++++.++..+..++.++.+. ..+++.+.+|+||.|+|
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~-~~~~~~~~al~dC~e~y 80 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS-NPPAAWKGPLKNCAFSY 80 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Confidence 45679999999999999999999999998888999999999999999999999999998764 45788999999999999
Q ss_pred HHHH-HHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHhhhchHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 029020 113 GDSI-DRLSKSVQELRGISGANDRDFLWHISNVQTWVSAALTDDDTCLDGLAALDGEVKDSIRTRVSNVAEVTSNALALV 191 (200)
Q Consensus 113 ~~a~-~~L~~a~~al~~~~~~~~~~~~~~~~d~~twLSaalt~~~TC~Dgf~~~~~~~~~~v~~~~~~~~~L~snaLaii 191 (200)
++++ ++|++++.++ +.+ +++++++|||+|++|++||+|||++. ++||..++.++.+|++|+|+|+
T Consensus 81 ~~a~~~~L~~a~~~l---~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~----~~pl~~~~~~~~~l~s~aLaii 146 (150)
T 2cj4_A 81 KVILTASLPEAIEAL---TKG-------DPKFAEDGMVGSSGDAQECEEYFKGS----KSPFSALNIAVHELSDVGRAIV 146 (150)
T ss_dssp HHHHHTHHHHHHHHH---HHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS----CCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHHHHH
Confidence 9999 7999999999 532 68999999999999999999999842 4578899999999999999999
Q ss_pred Hhh
Q 029020 192 NQL 194 (200)
Q Consensus 192 ~~l 194 (200)
+.|
T Consensus 147 ~~l 149 (150)
T 2cj4_A 147 RNL 149 (150)
T ss_dssp HTT
T ss_pred Hhh
Confidence 875
No 4
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=33.77 E-value=1.1e+02 Score=20.51 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=26.2
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 029020 97 LKPREQQPIDDCLQLMGDSIDRLSKSVQEL 126 (200)
Q Consensus 97 ~~~~~~~al~dC~el~~~a~~~L~~a~~al 126 (200)
.+..+..|+..|++-|-++-..+.+.+..+
T Consensus 56 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~ 85 (95)
T 3dxr_B 56 LNKNESSCLDRCVAKYFETNVQVGENMQKM 85 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999998887776
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=32.25 E-value=49 Score=20.24 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 029020 96 DLKPREQQPIDDCLQLMGDSIDRLSKSVQE 125 (200)
Q Consensus 96 ~~~~~~~~al~dC~el~~~a~~~L~~a~~a 125 (200)
..+..+..++..|.+-|-++-..+.+....
T Consensus 33 ~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 33 NLSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357778899999999999998887776554
No 6
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=28.66 E-value=34 Score=18.07 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=7.3
Q ss_pred hhHHHHHHHHhh
Q 029020 141 ISNVQTWVSAAL 152 (200)
Q Consensus 141 ~~d~~twLSaal 152 (200)
..|.+|||+|-+
T Consensus 16 LsDfktWlkaki 27 (31)
T 1r7c_A 16 LSDFKTWLKAKL 27 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 356677776643
No 7
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=26.77 E-value=2e+02 Score=21.37 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccc-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhhhHHHHH
Q 029020 69 MALEALSVSLSRTKSADSFVSNLVKHKDLKPRE-QQPIDDCLQLMGDSIDRLSKSVQELRGISGANDRDFLWHISNVQTW 147 (200)
Q Consensus 69 l~~~ai~~a~~~~~~a~~~~~~l~~~~~~~~~~-~~al~dC~el~~~a~~~L~~a~~al~~~~~~~~~~~~~~~~d~~tw 147 (200)
+.-++-+.+...++.....++.+... ..++.. +..|+-+.+.++++..-++++...+.++. +.. .......+-.-
T Consensus 77 y~g~aar~~A~aL~~lt~avrgvaat-t~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~--d~~-~~~~L~~~ak~ 152 (168)
T 2l7n_A 77 YAGIAARDVAGGLRSLAQAARGVAAL-TSDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPG--DPE-SQQRLAQVAKA 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSS--CHH-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--Cch-HHHHHHHHHHH
Confidence 44444444444444444455555543 345544 44566666888888888888887773321 111 11133344445
Q ss_pred HHHhhhchHHHH
Q 029020 148 VSAALTDDDTCL 159 (200)
Q Consensus 148 LSaalt~~~TC~ 159 (200)
+|.++...-.|+
T Consensus 153 vs~aL~~~v~cL 164 (168)
T 2l7n_A 153 VTQALNRCVSCL 164 (168)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhcC
Confidence 677765555554
No 8
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=25.79 E-value=84 Score=20.61 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=26.9
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 029020 96 DLKPREQQPIDDCLQLMGDSIDRLSKSVQEL 126 (200)
Q Consensus 96 ~~~~~~~~al~dC~el~~~a~~~L~~a~~al 126 (200)
..+..+..++..|.+-|-++-..+...+..+
T Consensus 42 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 72 (90)
T 2bsk_B 42 ELSKGESVCLDRCVSKYLDIHERMGKKLTEL 72 (90)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999888887776
No 9
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=25.57 E-value=87 Score=20.56 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=27.3
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 029020 96 DLKPREQQPIDDCLQLMGDSIDRLSKSVQEL 126 (200)
Q Consensus 96 ~~~~~~~~al~dC~el~~~a~~~L~~a~~al 126 (200)
..+..+..++..|++-|-++-..+......+
T Consensus 40 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 70 (89)
T 2bsk_A 40 EVKPEETTCSEHCLQKYLKMTQRISMRFQEY 70 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999998888877
No 10
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=22.45 E-value=87 Score=19.17 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 029020 97 LKPREQQPIDDCLQLMGDSIDRLSKSVQEL 126 (200)
Q Consensus 97 ~~~~~~~al~dC~el~~~a~~~L~~a~~al 126 (200)
.+..+..++..|.+-|-++-..+.+....+
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~ 54 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISR 54 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999988877665
No 11
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=21.75 E-value=99 Score=20.26 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=26.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 029020 97 LKPREQQPIDDCLQLMGDSIDRLSKSVQEL 126 (200)
Q Consensus 97 ~~~~~~~al~dC~el~~~a~~~L~~a~~al 126 (200)
.+..+..|+..|++-|-++-..+......+
T Consensus 50 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~ 79 (89)
T 3dxr_A 50 LTNKEQTCIMKCSEKFLKHSERVGQRFQEQ 79 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999998888776
Done!