BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029022
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 33 LKVD-MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRK 91
LKV+ M C C V +ALK GV+ + + + +V+G TADP + + ++++ G K
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEG-TADPKALVQAVEEE-GYK 61
Query: 92 VELIS 96
E+++
Sbjct: 62 AEVLA 66
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 35 VDMHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVEL 94
V M C++C V ++L+G GV D+ + V+V T P + + L + +GR+ L
Sbjct: 25 VQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV--HTTLPSQEVQALLEGTGRQAVL 82
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 32 VLKVD-MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTA 75
V +VD + C CA K R +K EGV + + ASK+ V G+ +
Sbjct: 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS 50
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 37 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQK 86
M C ACARKV A++ GV+ + K+VV +V LQK
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQK 61
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 37 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCE 82
M C ACA + RAL+ +GV + + ++ V T DP +V E
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTV---TYDPKQVSE 54
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 135 MHCEACAQGLRKRIRKIQGI 154
M C ACA + KR+ KI+G+
Sbjct: 12 MTCAACANRIEKRLNKIEGV 31
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 135 MHCEACAQGLRKRIRKIQGI 154
M C ACA + KR+ KI+G+
Sbjct: 83 MTCAACANRIEKRLNKIEGV 102
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 30 EIVLKVD-MHCEACARKVARALKGFEGVDDITAD--SKASKVVVKGKTADPIKVCERLQK 86
EI ++V M C ACA ++ + LK GV D + ++ S V+ + E+++K
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEK 66
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 135 MHCEACAQGLRKRIRKIQGI 154
M C ACA + KR+ KI+G+
Sbjct: 12 MTCAACANRIEKRLNKIEGV 31
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 28 TPEIVLKVDMHCEACARKVARALKGFEGVDDITAD 62
T E + MHCE C + LK G++ + D
Sbjct: 6 TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFD 40
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 135 MHCEACAQGLRKRIRKIQGI 154
M C ACA + KR+ KI+G+
Sbjct: 83 MTCAACANRIEKRLNKIEGV 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,151,968
Number of Sequences: 62578
Number of extensions: 127821
Number of successful extensions: 568
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 28
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)