BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029023
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KIU|A Chain A, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|C Chain C, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|E Chain E, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|G Chain G, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|I Chain I, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|K Chain K, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|M Chain M, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|O Chain O, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KLF|A Chain A, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|C Chain C, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|E Chain E, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|G Chain G, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|I Chain I, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|K Chain K, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|M Chain M, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|O Chain O, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
Length = 205
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 108 FSAIPTLLALKGAAESLEKLMDVTREELPE 137
F P L A+KG E+ +++D T +LP+
Sbjct: 48 FIVTPPLFAMKGKKENTLRILDATNNQLPQ 77
>pdb|1QUN|A Chain A, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|C Chain C, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|E Chain E, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|G Chain G, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|I Chain I, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|K Chain K, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|M Chain M, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|O Chain O, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
Length = 205
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 108 FSAIPTLLALKGAAESLEKLMDVTREELPE 137
F P L A+KG E+ +++D T +LP+
Sbjct: 48 FIVTPPLFAMKGKKENTLRILDATNNQLPQ 77
>pdb|3RFZ|C Chain C, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
pdb|3RFZ|F Chain F, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
Length = 211
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 108 FSAIPTLLALKGAAESLEKLMDVTREELPE 137
F P L A+KG E+ +++D T +LP+
Sbjct: 48 FIVTPPLFAMKGKKENTLRILDATNNQLPQ 77
>pdb|3SQB|A Chain A, Structure Of The Major Type 1 Pilus Subunit Fima Bound To
The Fimc Chaperone
pdb|3SQB|C Chain C, Structure Of The Major Type 1 Pilus Subunit Fima Bound To
The Fimc Chaperone
pdb|3SQB|E Chain E, Structure Of The Major Type 1 Pilus Subunit Fima Bound To
The Fimc Chaperone
pdb|3SQB|G Chain G, Structure Of The Major Type 1 Pilus Subunit Fima Bound To
The Fimc Chaperone
Length = 211
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 108 FSAIPTLLALKGAAESLEKLMDVTREELPE 137
F P L A+KG E+ +++D T +LP+
Sbjct: 48 FIVTPPLFAMKGKKENTLRILDATNNQLPQ 77
>pdb|1ZE3|C Chain C, Crystal Structure Of The Ternary Complex Of Fimd (N-
Terminal Domain) With Fimc And The Pilin Domain Of Fimh
pdb|1BF8|A Chain A, Periplasmic Chaperone Fimc, Nmr, 20 Structures
pdb|3BWU|C Chain C, Crystal Structure Of The Ternary Complex Of Fimd
(n-terminal Domain, Fimdn) With Fimc And The
N-terminally Truncated Pilus Subunit Fimf (fimft)
pdb|3JWN|C Chain C, Complex Of Fimc, Fimf, Fimg And Fimh
pdb|3JWN|I Chain I, Complex Of Fimc, Fimf, Fimg And Fimh
pdb|4DWH|A Chain A, Structure Of The Major Type 1 Pilus Subunit Fima Bound To
The Fimc (2.5 A Resolution)
pdb|4DWH|C Chain C, Structure Of The Major Type 1 Pilus Subunit Fima Bound To
The Fimc (2.5 A Resolution)
Length = 205
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 108 FSAIPTLLALKGAAESLEKLMDVTREELPE 137
F P L A+KG E+ +++D T +LP+
Sbjct: 48 FIVTPPLFAMKGKKENTLRILDATNNQLPQ 77
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 82 WNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKG-------AAESLEKLMDVTREE 134
W LT + ++ +IA A V L A+ L+G A E+ ++ +TRE+
Sbjct: 851 WQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910
Query: 135 LPETMAAVRL 144
ETM A L
Sbjct: 911 KFETMYAQSL 920
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 26.9 bits (58), Expect = 6.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 82 WNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKG-------AAESLEKLMDVTREE 134
W LT + ++ +IA A V L A+ L+G A E+ ++ +TRE+
Sbjct: 851 WQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910
Query: 135 LPETMAAVRL 144
ETM A L
Sbjct: 911 KFETMYAQSL 920
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 154 MELSDLGQEITQGVRSSTKAVRIAEERL 181
M L+DLG++IT +RS + A I EE L
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVL 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,432,761
Number of Sequences: 62578
Number of extensions: 113883
Number of successful extensions: 416
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 22
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)