BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029023
         (200 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q91QZ1|CAPSD_CLBVS Capsid protein OS=Citrus leaf blotch virus (isolate Nagami
           kumquat/France/SRA-153/1984) GN=ORF3 PE=4 SV=1
          Length = 363

 Score = 33.5 bits (75), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 108 FSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGV 167
           F AI ++LA K      +K+     EEL E++ A  L+G E  DL  +L D+ Q      
Sbjct: 55  FFAIFSILATKYGRVYSKKV-----EELNESLKAAILAGAEAEDLRNKLKDISQRYAS-- 107

Query: 168 RSSTKAVRIAEERLRQLTNMNPSGGSEP 195
                 + I  +R +QL ++   G  +P
Sbjct: 108 -----QLEITADREQQLESLKKKGHEQP 130


>sp|Q5M856|SPC25_RAT Kinetochore protein Spc25 OS=Rattus norvegicus GN=Spc25 PE=2 SV=1
          Length = 226

 Score = 31.6 bits (70), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 126 KLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184
           KL+   ++ + + +A V+  G E+  LT  + DL +E  +   + + A +  EERL++L
Sbjct: 75  KLIQEKKDNVLKMIAEVKGKGQEVEVLTANIQDLKEEYARKKETISTANKANEERLKRL 133


>sp|P71694|Y1425_MYCTU Putative diacyglycerol O-acyltransferase Rv1425/MT1468
           OS=Mycobacterium tuberculosis GN=Rv1425 PE=2 SV=3
          Length = 459

 Score = 31.2 bits (69), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 125 EKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQ 183
           E L+D+T E  P     V   G +I  L  E   +G  I  G+ +  + VR+ E+ +RQ
Sbjct: 151 EILLDITPEPRPPQQETVGFVGFQIPGL--ERRAIGALINVGIMTPFRIVRLLEQTVRQ 207


>sp|P32399|YHGE_BACSU Uncharacterized protein YhgE OS=Bacillus subtilis (strain 168)
           GN=yhgE PE=4 SV=2
          Length = 775

 Score = 31.2 bits (69), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 116 ALKGAAESLEKLMDVTRE------ELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRS 169
            L  A+   +K+ D T++      +L E +A ++ S   ISD T +L+D   ++T G++S
Sbjct: 179 GLSDASSGAKKIDDGTKDAKNGSAQLKENLAKLKESTATISDKTAQLADGAAQVTSGIQS 238


>sp|Q0VA06|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial
           OS=Xenopus tropicalis GN=letm1 PE=2 SV=1
          Length = 760

 Score = 30.0 bits (66), Expect = 9.8,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 125 EKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184
           +KL+   +EEL E    V+    ++ ++  ELS  GQE    V   TKA +I  +R+ ++
Sbjct: 577 KKLLTKEKEELSELKDDVQEYSEDLQEIKKELSKTGQE---KVLQETKASKILTKRVNRM 633

Query: 185 TNMNPSGGSEPEN 197
                   SE EN
Sbjct: 634 IGQMDKIISELEN 646


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.126    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,363,865
Number of Sequences: 539616
Number of extensions: 2200580
Number of successful extensions: 10586
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 10570
Number of HSP's gapped (non-prelim): 28
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)