Query 029023
Match_columns 200
No_of_seqs 66 out of 68
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 09:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f95_B Sensory rhodopsin II tr 73.2 2.4 8.3E-05 30.2 2.9 35 146-180 111-145 (163)
2 3eff_K Voltage-gated potassium 72.8 13 0.00045 27.5 6.9 42 66-115 52-93 (139)
3 3zrx_A AF1503 protein, osmolar 70.3 19 0.00064 23.2 7.6 16 128-143 64-79 (115)
4 2f95_B Sensory rhodopsin II tr 62.0 4.5 0.00015 28.8 2.3 40 141-180 113-152 (163)
5 2ch7_A Methyl-accepting chemot 61.8 15 0.00053 29.5 5.8 25 134-158 167-191 (309)
6 1ykh_B RNA polymerase II holoe 58.5 44 0.0015 25.7 7.6 65 118-186 67-131 (132)
7 1yke_B RNA polymerase II holoe 56.9 43 0.0015 26.6 7.5 66 118-187 67-132 (151)
8 3pjs_K KCSA, voltage-gated pot 49.3 9 0.00031 29.6 2.3 41 66-114 79-119 (166)
9 3ku8_A GYRA14, DNA gyrase subu 47.0 11 0.00037 30.5 2.5 23 143-165 124-146 (156)
10 1jb0_M Photosystem 1 reaction 40.9 23 0.00078 22.1 2.8 15 104-118 10-24 (31)
11 3gwk_C SAG1039, putative uncha 39.5 86 0.0029 21.2 8.4 68 116-183 19-94 (98)
12 3zbh_A ESXA; unknown function, 38.9 84 0.0029 20.9 8.7 68 116-183 20-95 (99)
13 3myf_A Sensor protein; HPT, hi 37.3 1E+02 0.0035 22.5 6.4 61 123-185 21-86 (119)
14 3m1f_V VOPL, putative uncharac 34.0 9.1 0.00031 24.0 0.1 16 153-168 3-18 (31)
15 3fav_B ESAT-6, 6 kDa early sec 31.5 1.1E+02 0.0039 20.4 5.4 36 147-182 55-90 (94)
16 1dow_A Alpha-catenin; four-hel 30.5 1E+02 0.0034 25.5 5.9 43 115-157 14-56 (205)
17 3iqt_A Signal transduction his 30.1 95 0.0033 23.0 5.2 61 123-185 30-95 (123)
18 3rf3_A Vinculin, metavinculin; 29.0 90 0.0031 26.4 5.5 29 130-158 69-97 (258)
19 3fav_A ESAT-6-like protein ESX 28.6 1.4E+02 0.0048 20.4 6.7 68 116-183 18-93 (101)
20 1qu7_A Methyl-accepting chemot 26.7 2E+02 0.0069 23.3 7.0 31 146-176 156-186 (227)
21 3vou_A ION transport 2 domain 25.9 1.5E+02 0.005 22.1 5.7 38 66-111 64-101 (148)
22 2dq0_A Seryl-tRNA synthetase; 25.5 3.7E+02 0.013 24.2 10.4 52 139-190 61-112 (455)
23 2y44_A GARP, glutamic acid/ala 24.1 2.5E+02 0.0087 23.3 7.2 53 121-180 131-183 (184)
24 3c4r_A Uncharacterized protein 22.8 2.8E+02 0.0094 22.5 7.0 69 120-193 71-139 (151)
25 3zx6_A HAMP, methyl-accepting 22.5 3.5E+02 0.012 22.8 9.2 20 162-181 119-138 (341)
26 4dnd_A Syntaxin-10, SYN10; str 22.4 2.6E+02 0.009 21.3 7.2 61 115-178 34-94 (130)
27 4fqn_A Malcavernin; helical do 20.7 1.2E+02 0.0042 23.1 4.3 40 120-160 14-61 (98)
28 4ew8_A Sensor protein DIVL; si 20.4 2.8E+02 0.0095 20.8 8.1 31 116-146 32-62 (268)
29 1i5n_A Chemotaxis protein CHEA 20.1 2.8E+02 0.0096 20.7 6.9 21 114-134 59-79 (146)
30 3g67_A Methyl-accepting chemot 20.0 3.6E+02 0.012 22.0 9.2 22 117-138 30-51 (213)
No 1
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=73.17 E-value=2.4 Score=30.19 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 029023 146 GMEISDLTMELSDLGQEITQGVRSSTKAVRIAEER 180 (200)
Q Consensus 146 GlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~ 180 (200)
.-||.++.+.++++.+++.+-++...+..+.+|+.
T Consensus 111 ~dEi~~L~~~~n~m~~~l~~~~~~~~~~~~~~~~~ 145 (163)
T 2f95_B 111 EDEIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQA 145 (163)
T ss_dssp -----------------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777787777777777766666544444444433
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=72.81 E-value=13 Score=27.51 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=23.8
Q ss_pred cccccCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029023 66 TTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLL 115 (200)
Q Consensus 66 ~ssVGs~~~~~l~~~~wnl~~~~l~vL~v~a~~vavs~t~ll~~aIPtll 115 (200)
.+|||=+++.|.. ...| +++++..++++.+.++++..|=...
T Consensus 52 ~tTvGyGd~~P~t-----~~~r---~~~~~~~~~G~~~~~~~~~~i~~~~ 93 (139)
T 3eff_K 52 ATTVGYGDLYPVT-----LWGR---LVAVVVMVAGITSFGLVTAALATWF 93 (139)
T ss_dssp HTTCCCSSSCCCS-----SHHH---HHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred eecccCCCCcCCC-----cCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789988865431 1223 3455556666666666655554433
No 3
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=70.28 E-value=19 Score=23.22 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=6.6
Q ss_pred HHHHHhhchhhHHHHH
Q 029023 128 MDVTREELPETMAAVR 143 (200)
Q Consensus 128 ~Dt~reELP~TLAAiR 143 (200)
...+..|+-..+..|+
T Consensus 64 ~~~~shel~~~l~~i~ 79 (115)
T 3zrx_A 64 MAGVSHDLRTPLTRIR 79 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 3334444444444443
No 4
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=61.99 E-value=4.5 Score=28.77 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 029023 141 AVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEER 180 (200)
Q Consensus 141 AiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~ 180 (200)
.+.--+..++++.+++.+..+++.+.-+...+.-+.||..
T Consensus 113 Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~~~~~~~ea~~~ 152 (163)
T 2f95_B 113 EIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEI 152 (163)
T ss_dssp ----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444466667777777666666666555555555555443
No 5
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=61.84 E-value=15 Score=29.50 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=10.1
Q ss_pred hchhhHHHHHhhhhhhhhhhHHhhh
Q 029023 134 ELPETMAAVRLSGMEISDLTMELSD 158 (200)
Q Consensus 134 ELP~TLAAiRLSGlEIsDLT~eLs~ 158 (200)
|+-.--...+..+.+|.++++++.+
T Consensus 167 eIr~LA~~t~~~~~~i~~v~~~i~~ 191 (309)
T 2ch7_A 167 EIRKLAEESQQASENVRRVVNEIRS 191 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444433
No 6
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=58.47 E-value=44 Score=25.70 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhhcC
Q 029023 118 KGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTN 186 (200)
Q Consensus 118 kRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~~~ 186 (200)
...++-++.|. ..||+-=.+-..-=..|.+|-.|+.+..+|+.+-|+...+.++.++.-||.+++
T Consensus 67 i~k~kqIe~LI----dsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~~ 131 (132)
T 1ykh_B 67 ILKTRQINKLI----DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFVD 131 (132)
T ss_dssp HHHHHHHHHHH----HHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555554 556754222222334577888999999999999999999999999999998864
No 7
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=56.93 E-value=43 Score=26.55 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhhcCC
Q 029023 118 KGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNM 187 (200)
Q Consensus 118 kRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~~~~ 187 (200)
...++-++.|. ..||+-=.+-..-=..|.+|-.|+.+..+|+.+-|+...+.++.++.-|+.++.-
T Consensus 67 i~kakqIe~LI----dsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~ 132 (151)
T 1yke_B 67 ILKTRQINKLI----DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDG 132 (151)
T ss_dssp HHHHHHHHHHH----HHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554 5567542222222345778889999999999999999999999999999998764
No 8
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=49.26 E-value=9 Score=29.56 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=21.5
Q ss_pred cccccCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029023 66 TTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTL 114 (200)
Q Consensus 66 ~ssVGs~~~~~l~~~~wnl~~~~l~vL~v~a~~vavs~t~ll~~aIPtl 114 (200)
.+|||=+++.|.. -..| +++++..++++.+.++++..|-..
T Consensus 79 ~tTvGyGDi~P~t-----~~~r---~~~~~~~l~G~~~~~~~~~~i~~~ 119 (166)
T 3pjs_K 79 ATTVGYGDLYPVT-----LWGR---LVAVVVMVAGITSFGLVTAALATW 119 (166)
T ss_dssp HSCCCCSSSCCCS-----STTT---TTTHHHHHHHHHHHHHHHTTSSSS
T ss_pred hccccCCCCCCCC-----HhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789988865432 1223 234444455555555555544433
No 9
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=46.97 E-value=11 Score=30.47 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.5
Q ss_pred HhhhhhhhhhhHHhhhhHHHHHH
Q 029023 143 RLSGMEISDLTMELSDLGQEITQ 165 (200)
Q Consensus 143 RLSGlEIsDLT~eLs~l~qei~~ 165 (200)
||+|+|+..+.+|..+|..+|.+
T Consensus 124 rLT~LE~~ki~~E~~eL~~~I~~ 146 (156)
T 3ku8_A 124 KLTGLEHEKLLDEYKELLDQIAE 146 (156)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999875
No 10
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=40.93 E-value=23 Score=22.08 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 029023 104 TWLFFSAIPTLLALK 118 (200)
Q Consensus 104 t~ll~~aIPtllAlk 118 (200)
.+++++.+|.++|+|
T Consensus 10 iAL~~Al~~~iLA~r 24 (31)
T 1jb0_M 10 VALVIALLPAVLAFR 24 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777788888875
No 11
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=39.49 E-value=86 Score=21.16 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhH--------HHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhh
Q 029023 116 ALKGAAESLEKLMDVTREELPETM--------AAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQ 183 (200)
Q Consensus 116 AlkRAA~SleKL~Dt~reELP~TL--------AAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq 183 (200)
.+++++..++...+.+..++-+.- .+.+=.=.+...-..++.++-++|.+-++.++...+.+|+.+-+
T Consensus 19 ~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A~ 94 (98)
T 3gwk_C 19 KYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIAS 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555431 12222234566667777788888889999999999999987754
No 12
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=38.93 E-value=84 Score=20.88 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh--------HHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhh
Q 029023 116 ALKGAAESLEKLMDVTREELPET--------MAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQ 183 (200)
Q Consensus 116 AlkRAA~SleKL~Dt~reELP~T--------LAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq 183 (200)
.+.+++..++...+.+..++-.. =.+.+-.=.+...-..++.+.-++|.+.++.++...+.+|+.+-+
T Consensus 20 ~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~~a~ 95 (99)
T 3zbh_A 20 QYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIAS 95 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554442 111222223455666777777778888899999999988887643
No 13
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=37.31 E-value=1e+02 Score=22.54 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHh-----hhhhHHHHHHHHHHHhhhc
Q 029023 123 SLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQG-----VRSSTKAVRIAEERLRQLT 185 (200)
Q Consensus 123 SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~G-----Vrss~~~v~~ae~~lrq~~ 185 (200)
-+.+++..+.+++|.+++.||- -++-.| .+++.+..|+|-.+ +..-.++.+..|..+|+..
T Consensus 21 L~~~lL~~fl~~~~~~~~~l~~-a~~~~d-~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~ 86 (119)
T 3myf_A 21 LALEMLKMLLDSLPETVEKIQT-ALGQND-QATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQT 86 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHTC-HHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHcCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCC
Confidence 3456777788888888888874 334444 45666677776553 3444566677777777643
No 14
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=34.02 E-value=9.1 Score=24.03 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.1
Q ss_pred hHHhhhhHHHHHHhhh
Q 029023 153 TMELSDLGQEITQGVR 168 (200)
Q Consensus 153 T~eLs~l~qei~~GVr 168 (200)
-+|=+.||.+|.+||+
T Consensus 3 nedrSKLMEqIRqGVk 18 (31)
T 3m1f_V 3 NEDHSKLMEQIRQGVK 18 (31)
T ss_dssp STTHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHhhhc
Confidence 3566889999999996
No 15
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=31.53 E-value=1.1e+02 Score=20.37 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=17.7
Q ss_pred hhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHh
Q 029023 147 MEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLR 182 (200)
Q Consensus 147 lEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lr 182 (200)
.+...-..++.+.-++|.+-|+.++...+.+|....
T Consensus 55 ~~w~~~~~~~~~~L~~i~~~l~~~~~~y~~~d~~~a 90 (94)
T 3fav_B 55 QKWDATATELNNALQNLARTISEAGQAMASTEGNVT 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666667777777777777777777776543
No 16
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=30.53 E-value=1e+02 Score=25.53 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhh
Q 029023 115 LALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELS 157 (200)
Q Consensus 115 lAlkRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs 157 (200)
..|-..++.+..=-+-+++|+|+.+..+|.+|..+.+.++++.
T Consensus 14 ~nfv~vG~~ia~e~~~lk~dM~~A~~~v~~ag~~l~~a~~~~~ 56 (205)
T 1dow_A 14 ENFLEKGDKIAKESQFLKEELVVAVEDVRKQGDLMKSAAGEFA 56 (205)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444445999999999999999999999998873
No 17
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=30.12 E-value=95 Score=23.03 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHh-----hhhhHHHHHHHHHHHhhhc
Q 029023 123 SLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQG-----VRSSTKAVRIAEERLRQLT 185 (200)
Q Consensus 123 SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~G-----Vrss~~~v~~ae~~lrq~~ 185 (200)
-+.++++++.+++|.+++.|+- -++-.| .+++.++.|+|-.+ +..-.++.+..|..+|+..
T Consensus 30 La~elL~~fl~~~~~~~~~l~~-a~~~~d-~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~ 95 (123)
T 3iqt_A 30 LARDMLQMLLDFLPEVRNKVEE-QLVGEN-PEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGT 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTCC-CTTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHcCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCC
Confidence 4567888888999999998874 233334 46677777777654 4445667777888887654
No 18
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=28.97 E-value=90 Score=26.43 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHhhchhhHHHHHhhhhhhhhhhHHhhh
Q 029023 130 VTREELPETMAAVRLSGMEISDLTMELSD 158 (200)
Q Consensus 130 t~reELP~TLAAiRLSGlEIsDLT~eLs~ 158 (200)
.+.+|+|+++..+|.+|.-|...+.++.+
T Consensus 69 ~lk~eM~~A~~~v~~ag~~l~~aa~~~~~ 97 (258)
T 3rf3_A 69 ILKRDMPPAFIKVENACTKLVQAAQMLQS 97 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999988653
No 19
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=28.64 E-value=1.4e+02 Score=20.37 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchh---h-----HHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhh
Q 029023 116 ALKGAAESLEKLMDVTREELPE---T-----MAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQ 183 (200)
Q Consensus 116 AlkRAA~SleKL~Dt~reELP~---T-----LAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq 183 (200)
.+.+.+..++.+++.+..++-+ + =.+-+-.=.+...-..++.+.-++|.+.++.+++..+.+|+...+
T Consensus 18 ~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d~~~a~ 93 (101)
T 3fav_A 18 NFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEEQQQ 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666544422 2 122222234556666777777888888888888888888876654
No 20
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=26.66 E-value=2e+02 Score=23.25 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=13.5
Q ss_pred hhhhhhhhHHhhhhHHHHHHhhhhhHHHHHH
Q 029023 146 GMEISDLTMELSDLGQEITQGVRSSTKAVRI 176 (200)
Q Consensus 146 GlEIsDLT~eLs~l~qei~~GVrss~~~v~~ 176 (200)
-.++.+...++...+++...++......+..
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~ 186 (227)
T 1qu7_A 156 VTRVTDIMGEIASASDEQSRGIDQVGLAVAE 186 (227)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 21
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=25.86 E-value=1.5e+02 Score=22.06 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=19.3
Q ss_pred cccccCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 029023 66 TTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAI 111 (200)
Q Consensus 66 ~ssVGs~~~~~l~~~~wnl~~~~l~vL~v~a~~vavs~t~ll~~aI 111 (200)
.+|||=+++.|.. -..| +++++..++++.+.+.++..+
T Consensus 64 ~tTvGyGd~~p~t-----~~~r---~~~~~~~~~g~~~~~~~~~~~ 101 (148)
T 3vou_A 64 LTTVGDGNFSPQT-----DFGK---VFTILYIFIGIGLVFGFIHKL 101 (148)
T ss_dssp HTTCCCSSCCCCS-----HHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCCCCCC-----ccHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4789988865431 1112 234444455555544444444
No 22
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.49 E-value=3.7e+02 Score=24.19 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhhcCCCCC
Q 029023 139 MAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPS 190 (200)
Q Consensus 139 LAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~~~~~~~ 190 (200)
+..++-.|.+..+|..+++++..+|.+-=.....+-...+.-+.++.|++-+
T Consensus 61 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 112 (455)
T 2dq0_A 61 IGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHP 112 (455)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4445566778888888888777777766666666666667777788887643
No 23
>2y44_A GARP, glutamic acid/alanine-rich protein; membrane protein, surface protein; 1.65A {Trypanosoma congolense}
Probab=24.07 E-value=2.5e+02 Score=23.33 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 029023 121 AESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEER 180 (200)
Q Consensus 121 A~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~ 180 (200)
+.|+++.++.+.+-+|+-...+|--+.|+. .-.+++.++|+.+.++-..||..
T Consensus 131 s~SL~~Al~~l~~~~~~~~~~lr~~~~~~~-------~~l~~LE~~~~~a~~a~~~Ae~a 183 (184)
T 2y44_A 131 SKSLESAFDALAELLPDGADDIREHGAVFV-------KGLKSLEDDVRTAGEAKYEAEKA 183 (184)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 357888888888888888666654444433 33345668999998888888764
No 24
>3c4r_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.30A {Escherichia coli O6}
Probab=22.76 E-value=2.8e+02 Score=22.51 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhhcCCCCCCCC
Q 029023 120 AAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSGGS 193 (200)
Q Consensus 120 AA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~~~~~~~~~~ 193 (200)
+.+.+..|.-.+.+-||.-+.+ |+.|....-|..-+ +-.++|...+. .-+.++-+..+|+..-.|+|+.
T Consensus 71 ~~~ki~~L~PAIlaALP~Erra-rl~~~~~~yl~~~~-~~~e~l~~~~~---~~~~~~~a~~~~~~~~g~~g~~ 139 (151)
T 3c4r_A 71 AVEKIQALLPAIEKSMPPLLVA-RMRSHSSAYFRELV-ETRERLVRDAD---DFVAVAIAGFNQMNRGGPAGNI 139 (151)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHH-HHTTSSCHHHHHHH-HHHHHHHHHHH---HHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHH-HHhCCChHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHhcCCCCCCCe
Confidence 3444555555555566666543 56555544444443 33334433333 3366777888888888888874
No 25
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=22.46 E-value=3.5e+02 Score=22.76 Aligned_cols=20 Identities=10% Similarity=0.141 Sum_probs=7.2
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 029023 162 EITQGVRSSTKAVRIAEERL 181 (200)
Q Consensus 162 ei~~GVrss~~~v~~ae~~l 181 (200)
++.+.++...+.++.+...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~ 138 (341)
T 3zx6_A 119 SASETAQRGGKVVDNVVQTM 138 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 26
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.35 E-value=2.6e+02 Score=21.33 Aligned_cols=61 Identities=21% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHH
Q 029023 115 LALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAE 178 (200)
Q Consensus 115 lAlkRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae 178 (200)
.++.++.+.++.|+..-.+.+.++=.. +..|+..++.||.+--++|..-+.--.++|..+|
T Consensus 34 ~EVq~sl~~l~~l~~~w~~l~~~~~~~---s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 34 GEVQKAVNTARGLYQRWCELLQESAAV---GREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666544333221110 2345555566655555555555555555555555
No 27
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=20.67 E-value=1.2e+02 Score=23.11 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhchhh--------HHHHHhhhhhhhhhhHHhhhhH
Q 029023 120 AAESLEKLMDVTREELPET--------MAAVRLSGMEISDLTMELSDLG 160 (200)
Q Consensus 120 AA~SleKL~Dt~reELP~T--------LAAiRLSGlEIsDLT~eLs~l~ 160 (200)
|.+.++..|-+++.+|-+. |..-|+ |+.|-+...+|.+|=
T Consensus 14 a~e~lqdYM~~L~~~L~~~ElqqFA~Llr~YR~-G~~I~~Fc~kLl~Ly 61 (98)
T 4fqn_A 14 ATELLQDYMLTLRTKLSSQEIQQFAALLHEYRN-GASIHEFCINLRQLY 61 (98)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHh
Confidence 5567888888998877666 566677 699999999988763
No 28
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=20.44 E-value=2.8e+02 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHhhh
Q 029023 116 ALKGAAESLEKLMDVTREELPETMAAVRLSG 146 (200)
Q Consensus 116 AlkRAA~SleKL~Dt~reELP~TLAAiRLSG 146 (200)
+++++.+..+++++.+.-||-..|++|+..-
T Consensus 32 ~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~ 62 (268)
T 4ew8_A 32 ALAEAERLKRDFVGNVSYELRTPLTTIIGYS 62 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555556777777788877777776543
No 29
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=20.07 E-value=2.8e+02 Score=20.74 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 029023 114 LLALKGAAESLEKLMDVTREE 134 (200)
Q Consensus 114 llAlkRAA~SleKL~Dt~reE 134 (200)
+..+.+.+..+|.++|.+|+.
T Consensus 59 ~~~l~~lah~lE~~l~~~r~g 79 (146)
T 1i5n_A 59 FTILQETTHLMENLLDEARRG 79 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 345566677778888887763
No 30
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=20.03 E-value=3.6e+02 Score=22.00 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhh
Q 029023 117 LKGAAESLEKLMDVTREELPET 138 (200)
Q Consensus 117 lkRAA~SleKL~Dt~reELP~T 138 (200)
+......+++..+.+.+++-.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~ 51 (213)
T 3g67_A 30 LVSVIQDMEKISENIMEELKKS 51 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
Done!