Query 029023
Match_columns 200
No_of_seqs 66 out of 68
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 09:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t01a1 a.24.9.1 (A:1-125) Vin 63.1 5.1 0.00037 29.2 4.8 43 116-158 53-97 (125)
2 d1i5na_ a.24.10.3 (A:) Chemota 61.2 12 0.00089 25.3 6.4 69 113-185 55-124 (128)
3 d1x75a1 e.11.1.1 (A:363-494) D 50.1 4.3 0.00032 29.6 2.5 24 142-165 102-125 (132)
4 d1st6a4 a.24.9.1 (A:372-488) V 48.5 26 0.0019 25.5 6.6 49 136-184 54-102 (117)
5 d1jb0m_ f.23.19.1 (M:) Subunit 47.1 11 0.00078 22.2 3.5 18 104-121 10-27 (31)
6 d1st6a3 a.24.9.1 (A:253-371) V 47.0 14 0.001 26.9 5.0 65 117-184 47-111 (119)
7 d1t3ua_ d.244.1.1 (A:) ZapA ho 41.9 40 0.0029 21.7 7.7 54 116-170 22-82 (92)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 28.9 67 0.0049 20.5 6.0 19 106-124 16-34 (158)
9 d1skyb1 a.69.1.1 (B:372-502) F 27.5 34 0.0024 24.2 4.2 47 119-167 81-127 (131)
10 d1dova_ a.24.9.1 (A:) alpha-ca 23.5 51 0.0037 24.7 4.8 29 130-158 4-32 (181)
11 d1umna_ a.25.1.1 (A:) Dodecame 23.3 1.1E+02 0.0077 20.8 7.7 88 78-179 23-117 (151)
12 d1ykhb1 a.252.1.1 (B:2-130) RN 21.9 1.3E+02 0.0093 21.3 7.5 62 119-184 67-128 (129)
No 1
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=63.06 E-value=5.1 Score=29.22 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHH--HHHhhchhhHHHHHhhhhhhhhhhHHhhh
Q 029023 116 ALKGAAESLEKLMD--VTREELPETMAAVRLSGMEISDLTMELSD 158 (200)
Q Consensus 116 AlkRAA~SleKL~D--t~reELP~TLAAiRLSGlEIsDLT~eLs~ 158 (200)
.|-+.++...+-.| .+++|+|++...+|.+|..|.+.++.+.+
T Consensus 53 ~fv~vG~~~a~~s~d~~lk~eM~~A~~~vr~ag~~l~~aa~~l~~ 97 (125)
T d1t01a1 53 NLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVRAAQMLQA 97 (125)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444443332 38999999999999999999999988764
No 2
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=61.24 E-value=12 Score=25.35 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhhc
Q 029023 113 TLLALKGAAESLEKLMDVTRE-ELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLT 185 (200)
Q Consensus 113 tllAlkRAA~SleKL~Dt~re-ELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~~ 185 (200)
-+..+.+.|..+|.+++.+++ +++.+-..+.+ +-...|.+..+...+.+|-.--...++..-+.|+++.
T Consensus 55 gl~~i~~lah~lE~~l~~lr~~~~~~~~~~~~~----l~~~~d~l~~~l~~~~~~~~~~~~~~~~l~~~L~~l~ 124 (128)
T d1i5na_ 55 GFTILQETTHLMENLLDEARRGEMQLNTDIINL----FLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQLA 124 (128)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHH----HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHh
Confidence 456778888899999998875 44544333322 3344455555555555554433444555666777654
No 3
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=50.08 E-value=4.3 Score=29.65 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.5
Q ss_pred HHhhhhhhhhhhHHhhhhHHHHHH
Q 029023 142 VRLSGMEISDLTMELSDLGQEITQ 165 (200)
Q Consensus 142 iRLSGlEIsDLT~eLs~l~qei~~ 165 (200)
=||+|+|+..+..|..+++.+|.+
T Consensus 102 ~rLT~LE~~kl~~E~~eL~~~I~~ 125 (132)
T d1x75a1 102 QKLTGLEHEKLLDEYKELLDQIAE 125 (132)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999988864
No 4
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=48.53 E-value=26 Score=25.48 Aligned_cols=49 Identities=27% Similarity=0.233 Sum_probs=30.1
Q ss_pred hhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhh
Q 029023 136 PETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184 (200)
Q Consensus 136 P~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~ 184 (200)
|--=+.|.=.+-||..+|++|.||+++=-..-=.+.++.++....|..+
T Consensus 54 P~~r~~il~lc~ei~~lt~qLadLr~~GkG~sPeA~~lA~qi~~kL~~L 102 (117)
T d1st6a4 54 PKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNL 102 (117)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3345666667889999999999998763322223344444455555443
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=47.15 E-value=11 Score=22.19 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029023 104 TWLFFSAIPTLLALKGAA 121 (200)
Q Consensus 104 t~ll~~aIPtllAlkRAA 121 (200)
.+++++.||.++|++-+-
T Consensus 10 valvial~pg~lafrlat 27 (31)
T d1jb0m_ 10 VALVIALLPAVLAFRLST 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456678899999997553
No 6
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=46.95 E-value=14 Score=26.92 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhh
Q 029023 117 LKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184 (200)
Q Consensus 117 lkRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~ 184 (200)
++.--+...|+.+.. .|+-=+.|.=..-||..+|++|.+|+++=-..-=.+.++.++....|..+
T Consensus 47 iR~il~earkva~~~---~~~~r~~Il~~c~ei~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L 111 (119)
T d1st6a3 47 IRQILDEAGKAGELC---AGKERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLL 111 (119)
T ss_dssp HHHHHHHHHHHHHTT---CSTTHHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 333334444444332 24445667777788888888888887752222222344445555555443
No 7
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.89 E-value=40 Score=21.73 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh-------HHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhh
Q 029023 116 ALKGAAESLEKLMDVTREELPET-------MAAVRLSGMEISDLTMELSDLGQEITQGVRSS 170 (200)
Q Consensus 116 AlkRAA~SleKL~Dt~reELP~T-------LAAiRLSGlEIsDLT~eLs~l~qei~~GVrss 170 (200)
.++++|+-+.+-++.+++..|.. |+++-+. -|+-++-++..+..+++.+-++.-
T Consensus 22 ~l~~aA~~ln~k~~~l~~~~~~~~~~~~lvmaaLnla-~e~~~~~~~~~~~~~~~~~~i~~L 82 (92)
T d1t3ua_ 22 NLESAARYLDGKMREIRSSGKVIGADRVAVMAALNIT-HDLLHRKERLDQESSSTRERVREL 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999888754 6666443 233334444444444444444443
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=28.85 E-value=67 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029023 106 LFFSAIPTLLALKGAAESL 124 (200)
Q Consensus 106 ll~~aIPtllAlkRAA~Sl 124 (200)
|..+++|.++...+.++.-
T Consensus 16 Laaia~P~~~~~~~~a~~~ 34 (158)
T d2pila_ 16 LAAVALPAYQDYTARAQVS 34 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3366789998887766533
No 9
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=27.46 E-value=34 Score=24.22 Aligned_cols=47 Identities=4% Similarity=0.056 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhh
Q 029023 119 GAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGV 167 (200)
Q Consensus 119 RAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GV 167 (200)
+-..--++|.+.++.+-|+.|..|+-+| +++| -++|.+..++..++.
T Consensus 81 ~I~~fe~~ll~~l~~~~~~~l~~I~~~~-~l~d-e~~L~~~i~~fk~~F 127 (131)
T d1skyb1 81 DVRRFEKEFYLWLDQNGQHLLEHIRTTK-DLPN-EDDLNQAIEAFKKTF 127 (131)
T ss_dssp GHHHHHHHHHHHHHHGGGGTHHHHHHHS-CCCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHcC-CCCc-HHHHHHHHHHHHHHc
Confidence 3344456788888999999999998655 7776 355555554444443
No 10
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.53 E-value=51 Score=24.72 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.7
Q ss_pred HHHhhchhhHHHHHhhhhhhhhhhHHhhh
Q 029023 130 VTREELPETMAAVRLSGMEISDLTMELSD 158 (200)
Q Consensus 130 t~reELP~TLAAiRLSGlEIsDLT~eLs~ 158 (200)
.+++|+|++...+|.+|.-+.+.+.++.+
T Consensus 4 ~lk~em~~A~~~v~~ag~~l~~aa~~~~~ 32 (181)
T d1dova_ 4 FLKEELVVAVEDVRKQGDLMKSAAGEFAD 32 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999888888764
No 11
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]}
Probab=23.26 E-value=1.1e+02 Score=20.84 Aligned_cols=88 Identities=9% Similarity=0.080 Sum_probs=45.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH-hhhh------hhh
Q 029023 78 QLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVR-LSGM------EIS 150 (200)
Q Consensus 78 ~~~~wnl~~~~l~vL~v~a~~vavs~t~ll~~aIPtllAlkRAA~SleKL~Dt~reELP~TLAAiR-LSGl------EIs 150 (200)
+-.+||..+++|+.+--.+=-.. .++...++.+..-...+...-|.|++.+- .+.+ ...
T Consensus 23 ~~~HWnv~G~~F~~lH~~f~~~~--------------~e~~~~~D~lAERi~~lGg~p~~~~~~~~~~s~i~e~~~~~~~ 88 (151)
T d1umna_ 23 HQVHWYMRGRGFMIWHPKMDEYM--------------EEIDGYLDEMSERLITLGGAPFSTLKEFSENSQLKEVLGDYNV 88 (151)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSCCCCCCCTTS
T ss_pred HhhhcceeCCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHccCccccCCCCC
Confidence 44789999999985543221111 22333333333333334444466666542 2211 123
Q ss_pred hhhHHhhhhHHHHHHhhhhhHHHHHHHHH
Q 029023 151 DLTMELSDLGQEITQGVRSSTKAVRIAEE 179 (200)
Q Consensus 151 DLT~eLs~l~qei~~GVrss~~~v~~ae~ 179 (200)
|.-+-+.++.......++.-.+++..|+.
T Consensus 89 ~~~~ml~~~~~~~~~~~~~~~~~~~~a~~ 117 (151)
T d1umna_ 89 TIEEQLARVVEVFRYLAALFQKGFDVSDE 117 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666654
No 12
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.89 E-value=1.3e+02 Score=21.29 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhh
Q 029023 119 GAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184 (200)
Q Consensus 119 RAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~ 184 (200)
++++-+++|. ..||+-=.+-..--.-|.+|-.|+.+..+|+.+-||.....++..++.|+-+
T Consensus 67 ~kakqId~LI----~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~i 128 (129)
T d1ykhb1 67 LKTRQINKLI----DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 128 (129)
T ss_dssp HHHHHHHHHH----HHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555 4566531111122244678888999999999999999999999999888754
Done!