BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029024
MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG
TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN
RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL
WVLYNILQPALNQINRMRSE

High Scoring Gene Products

Symbol, full name Information P value
PSBY
photosystem II BY 		protein from Arabidopsis thaliana 8.2e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029024
        (200 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008555 - symbol:PSBY "photosystem II BY" spec...   311  8.2e-28   1


>TAIR|locus:2008555 [details] [associations]
            symbol:PSBY "photosystem II BY" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=ISM] [GO:0009523
            "photosystem II" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
            evidence=IEA;ISS;TAS] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0030095 "chloroplast photosystem II"
            evidence=ISS] [GO:0030145 "manganese ion binding" evidence=IEA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009657 "plastid
            organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
            evidence=RCA] [GO:0009533 "chloroplast stromal thylakoid"
            evidence=IDA] InterPro:IPR009388 Pfam:PF06298 GO:GO:0016021
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0030145 GO:GO:0009535
            GO:GO:0015979 EMBL:AC008113 GO:GO:0009523 GO:GO:0009533
            EMBL:AJ223306 EMBL:AF079800 EMBL:AY050391 EMBL:AY052269
            EMBL:AY097348 IPI:IPI00519144 PIR:T51847 RefSeq:NP_176940.1
            UniGene:At.24847 STRING:O49347 PaxDb:O49347 PRIDE:O49347
            EnsemblPlants:AT1G67740.1 GeneID:843099 KEGG:ath:AT1G67740
            TAIR:At1g67740 eggNOG:NOG245422 HOGENOM:HOG000029207
            InParanoid:O49347 KO:K02723 OMA:PAIGWVL PhylomeDB:O49347
            ProtClustDB:PLN00063 BioCyc:MetaCyc:AT1G67740-MONOMER
            Genevestigator:O49347 GermOnline:AT1G67740 Uniprot:O49347
        Length = 189

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 71/170 (41%), Positives = 92/170 (54%)

Query:    38 MQNLPKG---LTVSSKPTDSSSLAA-GTAIAGAIFSTLSSCDXXXX----XXXXXXXXXG 89
             +QN  K    +++ + P  + SLA   TA+AGA+FS+LS  +                  
Sbjct:    21 LQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASS 80

Query:    90 DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHX 149
             DNRG            WVL+NILQPA+NQ+N+MR +KG+++            +  PP  
Sbjct:    81 DNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPE 140

Query:   150 XXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
                            DSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct:   141 AYAAAEAAAASS---DSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       119   0.00091  102 3  11 22  0.46    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  102 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.51u 0.14s 8.65t   Elapsed:  00:00:00
  Total cpu time:  8.51u 0.14s 8.65t   Elapsed:  00:00:00
  Start:  Fri May 10 03:05:26 2013   End:  Fri May 10 03:05:26 2013

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