BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029024
(200 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225424556|ref|XP_002285325.1| PREDICTED: photosystem II core complex proteins psbY,
chloroplastic-like [Vitis vinifera]
Length = 201
Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/204 (76%), Positives = 177/204 (86%), Gaps = 7/204 (3%)
Query: 1 MAAAMATTAVLNAKCFSISSPKS-SIKPGTTKPTSPLSMQNLPKGLTV--SSKPTDSSSL 57
MAA +AT A+LNAKC SI+SPK+ ++ T KP S LS+QNLPKGLT SS+ + S+
Sbjct: 1 MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60
Query: 58 AAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALN 117
AGTAIAGAIFSTLSSCD A AAQQIAEIA+GDNRGLALLLPIIPAIAWVLFNILQPALN
Sbjct: 61 LAGTAIAGAIFSTLSSCDPALAAQQIAEIADGDNRGLALLLPIIPAIAWVLFNILQPALN 120
Query: 118 QINRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAA-SDSRGQLLLIVVT 176
Q+N+MRSTKGVIIGLGLGGLAA+G M + PHAS ASE+AT+A+AA SD+RGQLLL VVT
Sbjct: 121 QLNKMRSTKGVIIGLGLGGLAASGFM-LTPHAS--ASEIATLADAASSDNRGQLLLFVVT 177
Query: 177 PAILWVLYNILQPALNQINRMRSE 200
PAILWVLYNILQPALNQ+NRMRSE
Sbjct: 178 PAILWVLYNILQPALNQLNRMRSE 201
>gi|118488993|gb|ABK96304.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 196
Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 154/201 (76%), Positives = 173/201 (86%), Gaps = 6/201 (2%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPG-TTKPTSPLSMQNLPKGLTVSSKPTDSSSLAA 59
MAA MAT A+LNAKC SI+S K+ P +TKP S LSM NLPKGLT+S KP D++ L
Sbjct: 1 MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTIS-KPADNTVLT- 58
Query: 60 GTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQI 119
GTAIAGAIF+TLSSC+ AFAAQQIAEIAEGDNRG+ALLLP+IPAIAWVLFNILQPALNQI
Sbjct: 59 GTAIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQI 118
Query: 120 NRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAI 179
NRMR TKGVI+GLGLGGLAA+G +S P A+ASE+A IAEAASD+RG LLLIVV PAI
Sbjct: 119 NRMRQTKGVIVGLGLGGLAASGFISTP---DASASEIAMIAEAASDNRGTLLLIVVAPAI 175
Query: 180 LWVLYNILQPALNQINRMRSE 200
LWVLYNILQPALNQIN+MRS+
Sbjct: 176 LWVLYNILQPALNQINKMRSQ 196
>gi|118489498|gb|ABK96551.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 196
Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/201 (76%), Positives = 172/201 (85%), Gaps = 6/201 (2%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPG-TTKPTSPLSMQNLPKGLTVSSKPTDSSSLAA 59
MAA MAT A+LNAKC SI+S K+ P +TKP S LSM NLPKGLT+S KP D++ L
Sbjct: 1 MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTIS-KPADNTVLT- 58
Query: 60 GTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQI 119
GTAIAGAIF+TLSSC+ AFAAQQIAEIAEGDNRG+ALLLP+IPAIAWVLFNILQPALNQI
Sbjct: 59 GTAIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQI 118
Query: 120 NRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAI 179
NRMR TKGVI+GLGLGGLAA+G +S P A+ASE+A IAEA SD+RG LLLIVV PAI
Sbjct: 119 NRMRQTKGVIVGLGLGGLAASGFISTP---DASASEIAMIAEATSDNRGTLLLIVVAPAI 175
Query: 180 LWVLYNILQPALNQINRMRSE 200
LWVLYNILQPALNQIN+MRS+
Sbjct: 176 LWVLYNILQPALNQINKMRSQ 196
>gi|255547954|ref|XP_002515034.1| photosystem II core complex proteins psbY, chloroplast precursor
[Ricinus communis]
gi|223546085|gb|EEF47588.1| photosystem II core complex proteins psbY, chloroplast precursor
[Ricinus communis]
Length = 195
Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/197 (77%), Positives = 168/197 (85%), Gaps = 3/197 (1%)
Query: 5 MATTAVLNAKCFS-ISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAI 63
MAT A+LN KC S I+S K+ KP TTKP S LSMQ LPKGLT+S KPT+ + L AGTAI
Sbjct: 1 MATMAILNTKCLSNINSGKNINKPTTTKPISLLSMQELPKGLTIS-KPTNENKLLAGTAI 59
Query: 64 AGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR 123
AGAIFSTLSSCD AFAAQQIAEIAEGDNRGLALLLPIIPA+ WVLFNIL+PALNQINRMR
Sbjct: 60 AGAIFSTLSSCDPAFAAQQIAEIAEGDNRGLALLLPIIPALGWVLFNILRPALNQINRMR 119
Query: 124 STKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 183
TKGVIIGLGLGGLAATG M+ ++A+ +A IA+AASD+RGQLLL VV PAILWVL
Sbjct: 120 ETKGVIIGLGLGGLAATGFMAA-APEASASENIAMIADAASDNRGQLLLFVVAPAILWVL 178
Query: 184 YNILQPALNQINRMRSE 200
YNILQPALNQINRMRSE
Sbjct: 179 YNILQPALNQINRMRSE 195
>gi|224110818|ref|XP_002315645.1| hypothetical protein POPTRDRAFT_726168 [Populus trichocarpa]
gi|118489255|gb|ABK96433.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864685|gb|EEF01816.1| hypothetical protein POPTRDRAFT_726168 [Populus trichocarpa]
Length = 196
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/202 (78%), Positives = 175/202 (86%), Gaps = 8/202 (3%)
Query: 1 MAAAMATTAVLNAKCFSISSPK--SSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLA 58
MAA MAT A+LNAKC SI+S K S KP +TKP S LSMQNLPKGLT+S KP D++ L
Sbjct: 1 MAATMATMAILNAKCLSINSNKNISPTKP-STKPVSLLSMQNLPKGLTIS-KPADNTVLT 58
Query: 59 AGTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQ 118
GTAIAGAIF+TLSSC+ AFAAQQIAEIAEGDNRGLALLLP+IPAIAWVLFNILQPALNQ
Sbjct: 59 -GTAIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQ 117
Query: 119 INRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPA 178
INRMR TKGVI+GLGLGGLAA+G +S PHAS ASE+A IA+A SD+RG LLLIVV PA
Sbjct: 118 INRMRQTKGVIVGLGLGGLAASGFIST-PHAS--ASEIAMIADATSDNRGTLLLIVVAPA 174
Query: 179 ILWVLYNILQPALNQINRMRSE 200
ILWVLYNILQPALNQIN+MRS+
Sbjct: 175 ILWVLYNILQPALNQINKMRSQ 196
>gi|224102363|ref|XP_002312650.1| predicted protein [Populus trichocarpa]
gi|222852470|gb|EEE90017.1| predicted protein [Populus trichocarpa]
Length = 192
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/196 (77%), Positives = 171/196 (87%), Gaps = 8/196 (4%)
Query: 6 ATTAVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAI 63
AT A+LNAKC SI++ K++ IKP TKP L+MQNLPKGLT+S KP D+++LA GTAI
Sbjct: 3 ATMAILNAKCLSINANKNTNPIKP-PTKPIYLLAMQNLPKGLTIS-KPADNTALA-GTAI 59
Query: 64 AGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR 123
AGAIF+TLSSC+ AFAAQQIAEIAEGDNRGLALLLP+IPAIAWVLFNILQPALNQ+NRMR
Sbjct: 60 AGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQVNRMR 119
Query: 124 STKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 183
T+GVIIGLGLGGLAA+G MS P A+ASE+A IAEA SDSRG LLL+VV PAILWVL
Sbjct: 120 ETRGVIIGLGLGGLAASGFMSTP---DASASEIAMIAEATSDSRGTLLLLVVAPAILWVL 176
Query: 184 YNILQPALNQINRMRS 199
YNILQPALNQINRMRS
Sbjct: 177 YNILQPALNQINRMRS 192
>gi|118489582|gb|ABK96593.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 192
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/196 (77%), Positives = 171/196 (87%), Gaps = 8/196 (4%)
Query: 6 ATTAVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAI 63
AT A+LNAKC SI++ K++ IKP TKP L+MQNLPKGLT+S KP D+++LA GTAI
Sbjct: 3 ATMAILNAKCLSINANKNTNPIKP-PTKPIYLLAMQNLPKGLTIS-KPADNTALA-GTAI 59
Query: 64 AGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR 123
AGAIF+TLSSC+ AFAAQQIAEIAEGDNRGLALLLP+IPAIAWVLFNILQPALNQ+NRMR
Sbjct: 60 AGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQVNRMR 119
Query: 124 STKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 183
T+GVIIGLGLGGLAA+G MS P A+ASE+A IAEA SDSRG LLL+VV PAILWVL
Sbjct: 120 ETRGVIIGLGLGGLAASGFMSTP---DASASEIARIAEATSDSRGTLLLLVVAPAILWVL 176
Query: 184 YNILQPALNQINRMRS 199
YNILQPALNQINRMRS
Sbjct: 177 YNILQPALNQINRMRS 192
>gi|118489584|gb|ABK96594.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 192
Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/196 (75%), Positives = 167/196 (85%), Gaps = 8/196 (4%)
Query: 6 ATTAVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAI 63
AT A+LNAKC SI++ K++ IKP TKP L+MQNL KGLT+S KP D+++LA GTAI
Sbjct: 3 ATMAILNAKCLSINANKNTNPIKP-PTKPIYLLAMQNLTKGLTIS-KPADNTALA-GTAI 59
Query: 64 AGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR 123
AGAIF+ LSS + AFAAQQIAEIAEGDNRGLALLLP+IPAIAWVLFNILQP LNQ+NRMR
Sbjct: 60 AGAIFTALSSSEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPTLNQVNRMR 119
Query: 124 STKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 183
T+GVIIGLGLGGLAA+G MS P A+ASE+A IAEA SDSRG LLL+VV PAILWVL
Sbjct: 120 ETRGVIIGLGLGGLAASGFMSTP---DASASEIAMIAEATSDSRGTLLLLVVAPAILWVL 176
Query: 184 YNILQPALNQINRMRS 199
YNILQPALNQINRMRS
Sbjct: 177 YNILQPALNQINRMRS 192
>gi|356540203|ref|XP_003538579.1| PREDICTED: photosystem II core complex proteins psbY,
chloroplastic-like [Glycine max]
Length = 197
Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 136/206 (66%), Positives = 164/206 (79%), Gaps = 15/206 (7%)
Query: 1 MAAAMATT-AVLNAKCFSISSPKSSIKPGTTKPTSP----LSMQNLPKGLTVSSKPTDSS 55
MAA +ATT A++N+KC + + + P+ P S+QNLPKGLT + S
Sbjct: 1 MAATIATTMAMINSKCINTTGSSHKLHNPKLPPSKPTLSLFSLQNLPKGLT-----SHVS 55
Query: 56 SLAAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPA 115
+ AGTAIAGAIFS+L++CDAA AA QIAE+AEGDNRGLALLLP+IPAIAWVLFNILQPA
Sbjct: 56 TSTAGTAIAGAIFSSLANCDAALAASQIAELAEGDNRGLALLLPLIPAIAWVLFNILQPA 115
Query: 116 LNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAE-AASDSRGQLLLIV 174
LNQ+NRMR++KGVI+GLGL GL A+G+MS P A+ASE+A IA+ AASD+RGQLLL V
Sbjct: 116 LNQLNRMRNSKGVIVGLGL-GLCASGMMSGP---EASASEIAMIADAAASDNRGQLLLFV 171
Query: 175 VTPAILWVLYNILQPALNQINRMRSE 200
VTPAI+WVLYNILQPALNQ+NRMRSE
Sbjct: 172 VTPAIVWVLYNILQPALNQLNRMRSE 197
>gi|359806150|ref|NP_001240940.1| uncharacterized protein LOC100779397 [Glycine max]
gi|255646582|gb|ACU23765.1| unknown [Glycine max]
Length = 187
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 147/200 (73%), Gaps = 13/200 (6%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60
MA+ ++ A++NAKC + P P P+ P NLPKGL S +S+ L+
Sbjct: 1 MASTISAMAMINAKCVNPKFPN----PTKLAPSKPSLQINLPKGLIASP---ESTKLSPA 53
Query: 61 TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120
TAIAGAIF+TL +CDAAFA QQIA+IAEGDNRGLALLLPIIPAI WVLFNILQPALNQ+N
Sbjct: 54 TAIAGAIFTTLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLN 113
Query: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180
RMRSTKGVIIGLGLGGLA A A + + A AASD+RGQLLL VVTPAI
Sbjct: 114 RMRSTKGVIIGLGLGGLAGLA------AAPHAWAAASEAAAAASDNRGQLLLFVVTPAIA 167
Query: 181 WVLYNILQPALNQINRMRSE 200
WVLYNILQPALNQ+NRMRS+
Sbjct: 168 WVLYNILQPALNQLNRMRSQ 187
>gi|449450417|ref|XP_004142959.1| PREDICTED: photosystem II core complex proteins psbY,
chloroplastic-like [Cucumis sativus]
gi|449494514|ref|XP_004159566.1| PREDICTED: photosystem II core complex proteins psbY,
chloroplastic-like [Cucumis sativus]
Length = 253
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 168/206 (81%), Gaps = 10/206 (4%)
Query: 1 MAAAMATTAVLNAKCFSISSPKS-SIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLA- 58
MAA MAT AVL+ KC SI+S K+ + + KP S LS+QNLPKGL +SSK +S+L+
Sbjct: 52 MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGL-ISSKSNQNSNLST 110
Query: 59 --AGTAIAGAIFSTLSSCDAAFAAQQIAEIA-EGDNRGLALLLPIIPAIAWVLFNILQPA 115
+ TAIAGA+F+TL S D AFAAQQIAEIA +GDNRGLALLLP+IPA+AWVLFNILQPA
Sbjct: 111 FLSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPA 170
Query: 116 LNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEA-ASDSRGQLLLIV 174
LNQINRMRS KGVIIGLGLGGL A+G M P A+ASE+A IA+A +SDSRGQLLL V
Sbjct: 171 LNQINRMRSDKGVIIGLGLGGLTASGFMYAP---DASASEIAMIADASSSDSRGQLLLFV 227
Query: 175 VTPAILWVLYNILQPALNQINRMRSE 200
V PAILWVLYNILQPALNQ+NRMRSE
Sbjct: 228 VAPAILWVLYNILQPALNQLNRMRSE 253
>gi|388510158|gb|AFK43145.1| unknown [Medicago truncatula]
Length = 197
Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 131/207 (63%), Positives = 151/207 (72%), Gaps = 17/207 (8%)
Query: 1 MAAAMATTAVLNAKCFSISSPK---SSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSL 57
MAA MA ++N KC + PK S T +MQNLPKGL VS+K T+ S
Sbjct: 1 MAATMAM--MINTKCLNTGLPKLQNLSTTTKLTSTCKTTTMQNLPKGL-VSTKNTNFVS- 56
Query: 58 AAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALN 117
AIAGAIFS+L++ DAAFAAQQIAEIAEGDNRG LL + PAI WVLFNILQPALN
Sbjct: 57 -PSLAIAGAIFSSLATSDAAFAAQQIAEIAEGDNRGTLLLFVVAPAIGWVLFNILQPALN 115
Query: 118 QINRMRSTKGVII--GLGLGGLAATGLMSMPPHASAAASEVATIAEAA--SDSRGQLLLI 173
QINRMR+ KGVI+ GLGLGGLAA+G++S A+ASE+ IA+AA SD+RG LLL
Sbjct: 116 QINRMRNAKGVIVGLGLGLGGLAASGMVS-----EASASEIGLIADAAAGSDNRGTLLLF 170
Query: 174 VVTPAILWVLYNILQPALNQINRMRSE 200
VV PAILWVLYNILQPALNQINRMRS+
Sbjct: 171 VVAPAILWVLYNILQPALNQINRMRSD 197
>gi|388516745|gb|AFK46434.1| unknown [Lotus japonicus]
Length = 205
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/208 (63%), Positives = 153/208 (73%), Gaps = 11/208 (5%)
Query: 1 MAAAMATT-AVLNAKCFSISSPKSSIKPGTTKPTSP---LSMQNLPKGLTVSSKPTDSSS 56
MAA +ATT A++N+KC + K I P TK T+ +S QNLPKGL+ + + S++
Sbjct: 1 MAATIATTMAMINSKCLN---TKLMINPTNTKLTTSKPTISFQNLPKGLSSAENTSISTT 57
Query: 57 LAAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPAL 116
AGTAIAGAIFS+L SCDAAFAAQQIAEIAEGDNRGLALLLP+IPAI WVLFNILQPAL
Sbjct: 58 SMAGTAIAGAIFSSLVSCDAAFAAQQIAEIAEGDNRGLALLLPLIPAIVWVLFNILQPAL 117
Query: 117 NQINRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEV----ATIAEAASDSRGQLLL 172
NQINRMR+TKGVI+GLGLG M A+A E+ A SD+RGQLLL
Sbjct: 118 NQINRMRNTKGVIVGLGLGLGGLAAGSGMLWAPEASAGELGIIADAAAAGGSDNRGQLLL 177
Query: 173 IVVTPAILWVLYNILQPALNQINRMRSE 200
VV PAI WVL+NILQPALNQINRMRSE
Sbjct: 178 FVVAPAIGWVLFNILQPALNQINRMRSE 205
>gi|357463165|ref|XP_003601864.1| Photosystem II core complex proteins psbY [Medicago truncatula]
gi|355490912|gb|AES72115.1| Photosystem II core complex proteins psbY [Medicago truncatula]
Length = 193
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 126/198 (63%), Positives = 146/198 (73%), Gaps = 15/198 (7%)
Query: 10 VLNAKCFSISSPK---SSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 66
++N KC + PK S T +MQNLPKGL VS+K T+ S AIAGA
Sbjct: 4 MINTKCLNTGLPKLQNLSTTTKLTSTCKTTTMQNLPKGL-VSTKNTNFVS--PSLAIAGA 60
Query: 67 IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
IFS+L++ DAAFAAQQIAEIAEGDNRG LL + PAI WVLFNILQPALNQINRMR+ K
Sbjct: 61 IFSSLATSDAAFAAQQIAEIAEGDNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRNAK 120
Query: 127 GVII--GLGLGGLAATGLMSMPPHASAAASEVATIAEAA--SDSRGQLLLIVVTPAILWV 182
GVI+ GLGLGGLAA+G++S A+ASE+ IA+AA SD+RG LLL VV PAILWV
Sbjct: 121 GVIVGLGLGLGGLAASGMVS-----EASASEIGLIADAAAGSDNRGTLLLFVVAPAILWV 175
Query: 183 LYNILQPALNQINRMRSE 200
LYNILQPALNQINRMRS+
Sbjct: 176 LYNILQPALNQINRMRSD 193
>gi|351723201|ref|NP_001235479.1| uncharacterized protein LOC100500004 [Glycine max]
gi|255628451|gb|ACU14570.1| unknown [Glycine max]
Length = 192
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 148/200 (74%), Gaps = 8/200 (4%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60
MA+ ++ A++NAKC + P P P+ P NLPKGL S +++ L+
Sbjct: 1 MASTISAMAMINAKCVNPKFPN----PTKLVPSKPSLQVNLPKGLIASP---ENTKLSTA 53
Query: 61 TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120
TAIAGAIF+TL +CDAAFA QQIA+IAEGDNRGLALLLPIIPAI WVLFNILQPALNQ+N
Sbjct: 54 TAIAGAIFTTLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLN 113
Query: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180
RMRSTKGVIIGLGLGGLA A+AA+ A A++D+RGQLLL VVTPAI
Sbjct: 114 RMRSTKGVIIGLGLGGLAGLVAAPH-ASAAAASEVAAMAEAASNDNRGQLLLFVVTPAIA 172
Query: 181 WVLYNILQPALNQINRMRSE 200
WVLYNILQPALNQ+NRMRS+
Sbjct: 173 WVLYNILQPALNQLNRMRSQ 192
>gi|6093830|sp|P80470.2|PSBY_SPIOL RecName: Full=Photosystem II core complex proteins psbY,
chloroplastic; AltName: Full=L-arginine-metabolizing
enzyme; Short=L-AME; Contains: RecName: Full=Photosystem
II protein psbY-1, chloroplastic; AltName: Full=psbY-A1;
Contains: RecName: Full=Photosystem II protein psbY-2,
chloroplastic; AltName: Full=psbY-A2; Flags: Precursor
gi|3337435|gb|AAC95000.1| PsbY precursor [Spinacia oleracea]
Length = 199
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 141/197 (71%), Gaps = 14/197 (7%)
Query: 10 VLNAKCFSISSPKSSIKPGTTKPTS-PLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGAIF 68
VLN KC ++++ K++ + KPTS P+S+ P GL+ S P S + AIAGA+F
Sbjct: 11 VLNTKCLTLNTNKTTST--SPKPTSKPISLS--PLGLSNSKLPMGLSPIITAPAIAGAVF 66
Query: 69 STLSSCDAAFAAQQIAEIA----EGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS 124
+TL S D AFA QQ+A+IA DNRGLALLLPIIPA+ WVLFNILQPALNQIN+MR+
Sbjct: 67 ATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRN 126
Query: 125 -TKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 183
K I+GLGL GLA +GL+ P A AA+ E+A SD+RG LLL+VV PAI WVL
Sbjct: 127 EKKAFIVGLGLSGLATSGLLLATPEAQAASEEIAR----GSDNRGTLLLLVVLPAIGWVL 182
Query: 184 YNILQPALNQINRMRSE 200
+NILQPALNQ+N+MRS+
Sbjct: 183 FNILQPALNQLNKMRSQ 199
>gi|388502418|gb|AFK39275.1| unknown [Medicago truncatula]
gi|388509102|gb|AFK42617.1| unknown [Medicago truncatula]
Length = 202
Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 133/205 (64%), Positives = 155/205 (75%), Gaps = 11/205 (5%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPGT--TKPTSPLSMQNL-PKGLTVSSKPTDSSSL 57
MA+ + ++NAK + +S P T PTS +S++NL PK + + S+S+
Sbjct: 1 MASTIIAMTMINAKSLNTTSSPKFHNPTKLITNPTSLISLKNLLPKKIPTTENIKLSTSI 60
Query: 58 AAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEG--DNRGLALLLPIIPAIAWVLFNILQPA 115
A GTA+AGAIFSTLS+CDAAFAAQQIAEIAEG DNRGLALLLP+IPAIAWVL+NILQPA
Sbjct: 61 A-GTALAGAIFSTLSTCDAAFAAQQIAEIAEGSSDNRGLALLLPLIPAIAWVLYNILQPA 119
Query: 116 LNQINRMRSTKGVII-GLGLGGLAATGLMSMPPHASAAASEVATIAEAA-SDSRGQLLLI 173
LNQINRMR+ KGVII GGLAA+G +S A ASE+ IAEAA SD+RGQLLL
Sbjct: 120 LNQINRMRNDKGVIIGLGLGGGLAASGFVST---QDAIASEMTAIAEAAGSDNRGQLLLF 176
Query: 174 VVTPAILWVLYNILQPALNQINRMR 198
VVTPAILWVLYNILQPALNQINRMR
Sbjct: 177 VVTPAILWVLYNILQPALNQINRMR 201
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 148 HASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
A+ AA ++A IAE +SD+RG LL+ + PAI WVLYNILQPALNQINRMR++
Sbjct: 77 DAAFAAQQIAEIAEGSSDNRGLALLLPLIPAIAWVLYNILQPALNQINRMRND 129
>gi|217074490|gb|ACJ85605.1| unknown [Medicago truncatula]
Length = 202
Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/205 (63%), Positives = 153/205 (74%), Gaps = 11/205 (5%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPGT--TKPTSPLSMQNL-PKGLTVSSKPTDSSSL 57
MA+ + ++NAK + +S P T PTS +S++NL PK + + S+S+
Sbjct: 1 MASTIIAMTMINAKSLNTTSSPKFHNPTKLITNPTSLISLKNLLPKKIPTTENIKLSTSI 60
Query: 58 AAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEG--DNRGLALLLPIIPAIAWVLFNILQPA 115
A GTA+AGAIFSTLS+CDAAFAAQQIAEIAEG DNRGLALLLP+IPAIAWVL+NI QPA
Sbjct: 61 A-GTALAGAIFSTLSTCDAAFAAQQIAEIAEGSSDNRGLALLLPLIPAIAWVLYNIFQPA 119
Query: 116 LNQINRMRSTKGVII-GLGLGGLAATGLMSMPPHASAAASEVATIAEAA-SDSRGQLLLI 173
LNQINRMR+ KGVII GGLAA+G +S A ASE+ IAEAA SD+RGQLLL
Sbjct: 120 LNQINRMRNDKGVIIGLGLGGGLAASGFVST---QDAIASEMTAIAEAAGSDNRGQLLLF 176
Query: 174 VVTPAILWVLYNILQPALNQINRMR 198
VVTPAILWVLYNILQPA NQINRMR
Sbjct: 177 VVTPAILWVLYNILQPAFNQINRMR 201
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 42/53 (79%)
Query: 148 HASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
A+ AA ++A IAE +SD+RG LL+ + PAI WVLYNI QPALNQINRMR++
Sbjct: 77 DAAFAAQQIAEIAEGSSDNRGLALLLPLIPAIAWVLYNIFQPALNQINRMRND 129
>gi|449435015|ref|XP_004135291.1| PREDICTED: photosystem II core complex proteins psbY,
chloroplastic-like [Cucumis sativus]
Length = 179
Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 153/201 (76%), Gaps = 23/201 (11%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPGTTKP-TSPLSMQNLPKGLTVSSKPTDSSSLAA 59
MAA MAT A+LNAKCF+ + K+ + P +KP T P+S+ L + +KP+ A
Sbjct: 1 MAATMATMAILNAKCFTPIN-KTPLLP--SKPATKPISLP-----LPILTKPS-----LA 47
Query: 60 GTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQI 119
GTAIAGAIFSTLSS DAA AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQI
Sbjct: 48 GTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQI 107
Query: 120 NRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAI 179
NRMR+ K VI+GLGLGGL A+GL+ P A AEA SD RGQLLLIVV PAI
Sbjct: 108 NRMRTEKAVIVGLGLGGLLASGLVGTPE---------AMAAEAGSDGRGQLLLIVVAPAI 158
Query: 180 LWVLYNILQPALNQINRMRSE 200
WVL+NILQPALNQ+NRMRSE
Sbjct: 159 AWVLFNILQPALNQLNRMRSE 179
>gi|21593330|gb|AAM65279.1| unknown [Arabidopsis thaliana]
Length = 185
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 126/175 (72%), Gaps = 13/175 (7%)
Query: 34 SPLSMQNLPKG---LTVSSKPTDSSSLAA-GTAIAGAIFSTLSSCDAAFAAQQIAEIA-- 87
SP +QN K +++ + P + SLA TA+AGA+FS+LS + A A QQIA++A
Sbjct: 13 SPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAA 72
Query: 88 --EGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK-GVIIGLGLGGLAATGLMS 144
DNRGLALLLPI+PAIAWVL+NILQPA+NQ+N+MR +K V+ GGLAA+GL++
Sbjct: 73 NASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLT 132
Query: 145 MPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
A A A A+SDSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct: 133 ----PPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 183
>gi|15220530|ref|NP_176940.1| photosystem II protein psbY-2 [Arabidopsis thaliana]
gi|6093827|sp|O49347.1|PSBY_ARATH RecName: Full=Photosystem II core complex proteins psbY,
chloroplastic; AltName: Full=L-arginine-metabolizing
enzyme; Short=L-AME; Contains: RecName: Full=Photosystem
II protein psbY-1, chloroplastic; AltName: Full=psbY-A1;
Contains: RecName: Full=Photosystem II protein psbY-2,
chloroplastic; AltName: Full=psbY-A2; Flags: Precursor
gi|11072011|gb|AAG28890.1|AC008113_6 F12A21.13 [Arabidopsis thaliana]
gi|2956690|emb|CAA11248.1| PSBY [Arabidopsis thaliana]
gi|3414928|gb|AAC95011.1| PsbY precursor [Arabidopsis thaliana]
gi|15215725|gb|AAK91408.1| At1g67740/F12A21_13 [Arabidopsis thaliana]
gi|15529290|gb|AAK97739.1| At1g67740/F12A21_13 [Arabidopsis thaliana]
gi|20453251|gb|AAM19864.1| At1g67740/F12A21_13 [Arabidopsis thaliana]
gi|24417352|gb|AAN60286.1| unknown [Arabidopsis thaliana]
gi|332196568|gb|AEE34689.1| photosystem II protein psbY-2 [Arabidopsis thaliana]
Length = 189
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 126/175 (72%), Gaps = 13/175 (7%)
Query: 34 SPLSMQNLPKG---LTVSSKPTDSSSLAA-GTAIAGAIFSTLSSCDAAFAAQQIAEIA-- 87
SP +QN K +++ + P + SLA TA+AGA+FS+LS + A A QQIA++A
Sbjct: 17 SPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAA 76
Query: 88 --EGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK-GVIIGLGLGGLAATGLMS 144
DNRGLALLLPI+PAIAWVL+NILQPA+NQ+N+MR +K V+ GGLAA+GL++
Sbjct: 77 NASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLT 136
Query: 145 MPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
A A A A+SDSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct: 137 ----PPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187
>gi|297841473|ref|XP_002888618.1| hypothetical protein ARALYDRAFT_475878 [Arabidopsis lyrata subsp.
lyrata]
gi|297334459|gb|EFH64877.1| hypothetical protein ARALYDRAFT_475878 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/175 (57%), Positives = 126/175 (72%), Gaps = 13/175 (7%)
Query: 34 SPLSMQNLPKG---LTVSSKPTDSSSLA-AGTAIAGAIFSTLSSCDAAFAAQQIAEIAEG 89
SP +QN K +++ + P + SLA + TA+AGA+FS+LS + A A QQIA++A
Sbjct: 13 SPPKLQNQTKPKPFISLPTPPKPNVSLAVSSTALAGAVFSSLSYSEPALAIQQIAQLAAA 72
Query: 90 D----NRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK-GVIIGLGLGGLAATGLMS 144
D NRGLALLLPIIPAIAWVL+NILQPA+NQ+N+MR +K V+ GGLAA+GL++
Sbjct: 73 DAGSDNRGLALLLPIIPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLT 132
Query: 145 MPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
A A A A SDSRGQLLLIVVTPA+LWVL+NILQPALNQ+N+MRS
Sbjct: 133 ----PPPEAYAAAEAAAAGSDSRGQLLLIVVTPALLWVLFNILQPALNQLNKMRS 183
>gi|116783150|gb|ABK22811.1| unknown [Picea sitchensis]
Length = 206
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 96/134 (71%), Gaps = 2/134 (1%)
Query: 67 IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
+ LSSCD+A AAQ++ E+A D+RG LLLP++PAIAWVL+NILQPALNQINRM+
Sbjct: 73 LIGALSSCDSAAAAQEVMELAASDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA- 131
Query: 127 GVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAA-SDSRGQLLLIVVTPAILWVLYN 185
G++ GLG +S P A A A+AA +D+RG LLLIVV PAI WVL+N
Sbjct: 132 GLVAFAGLGAAGGAAFLSNPEEAHAEQLVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFN 191
Query: 186 ILQPALNQINRMRS 199
ILQPALNQIN+MRS
Sbjct: 192 ILQPALNQINKMRS 205
>gi|116791793|gb|ABK26111.1| unknown [Picea sitchensis]
gi|116792769|gb|ABK26490.1| unknown [Picea sitchensis]
gi|148906010|gb|ABR16165.1| unknown [Picea sitchensis]
gi|148906227|gb|ABR16269.1| unknown [Picea sitchensis]
gi|148907833|gb|ABR17041.1| unknown [Picea sitchensis]
gi|148908345|gb|ABR17286.1| unknown [Picea sitchensis]
gi|224285567|gb|ACN40502.1| unknown [Picea sitchensis]
Length = 207
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 96/134 (71%), Gaps = 2/134 (1%)
Query: 67 IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
+ LSSCD+A AAQ++ E+A D+RG LLLP++PAIAWVL+NILQPALNQINRM+
Sbjct: 73 LIGALSSCDSAAAAQEVMELAASDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA- 131
Query: 127 GVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAA-SDSRGQLLLIVVTPAILWVLYN 185
G++ GLG +S P A A A+AA +D+RG LLLIVV PAI WVL+N
Sbjct: 132 GLVAFAGLGAAGGAAFLSNPEEAHAEQLVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFN 191
Query: 186 ILQPALNQINRMRS 199
ILQPALNQIN+MRS
Sbjct: 192 ILQPALNQINKMRS 205
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 72 SSCDAAFAAQQI----AEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
S+ + A A Q + A+ A DNRGL LL+ +IPAI WVLFNILQPALNQIN+MRS K
Sbjct: 149 SNPEEAHAEQLVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRSGK 207
>gi|116779512|gb|ABK21316.1| unknown [Picea sitchensis]
gi|116779793|gb|ABK21432.1| unknown [Picea sitchensis]
gi|116780291|gb|ABK21621.1| unknown [Picea sitchensis]
gi|116782013|gb|ABK22335.1| unknown [Picea sitchensis]
gi|116782043|gb|ABK22345.1| unknown [Picea sitchensis]
gi|116784459|gb|ABK23350.1| unknown [Picea sitchensis]
gi|116791697|gb|ABK26075.1| unknown [Picea sitchensis]
gi|116791715|gb|ABK26082.1| unknown [Picea sitchensis]
gi|224285486|gb|ACN40464.1| unknown [Picea sitchensis]
gi|224285621|gb|ACN40529.1| unknown [Picea sitchensis]
Length = 206
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 96/134 (71%), Gaps = 2/134 (1%)
Query: 67 IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
+ LSSCD+A AAQ++ E+A D+RG LLLP++PAIAWVL+NILQPALNQINRM+
Sbjct: 73 LIGALSSCDSAAAAQEVMELAASDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA- 131
Query: 127 GVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAA-SDSRGQLLLIVVTPAILWVLYN 185
G++ GLG +S P A A A+AA +D+RG LLLIVV PAI WVL+N
Sbjct: 132 GLVAFAGLGAAGGAAFLSNPEEAHAEQLVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFN 191
Query: 186 ILQPALNQINRMRS 199
ILQPALNQIN+MRS
Sbjct: 192 ILQPALNQINKMRS 205
>gi|168049991|ref|XP_001777444.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671175|gb|EDQ57731.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 130
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 97/127 (76%), Gaps = 7/127 (5%)
Query: 73 SCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGL 132
+ ++A A+QQI +AEGDNR +ALL+P++PAI WVLFNIL+PALNQ+++MRS K ++ G
Sbjct: 11 TSESALASQQIMALAEGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMRSAKALVAGA 70
Query: 133 GLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALN 192
GLG LA M PHA AA E+A +AE SD+RG +++ ++ PAI WVL+NIL+PALN
Sbjct: 71 GLGSLA----MLAAPHAD-AAQEIAQVAE--SDARGLIIIGLLLPAIGWVLFNILRPALN 123
Query: 193 QINRMRS 199
Q +M++
Sbjct: 124 QFEKMQN 130
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Query: 63 IAGAIFSTLSSCDA--AFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120
+AGA +L+ A A AAQ+IA++AE D RGL ++ ++PAI WVLFNIL+PALNQ
Sbjct: 67 VAGAGLGSLAMLAAPHADAAQEIAQVAESDARGLIIIGLLLPAIGWVLFNILRPALNQFE 126
Query: 121 RMRS 124
+M++
Sbjct: 127 KMQN 130
>gi|224284263|gb|ACN39867.1| unknown [Picea sitchensis]
Length = 206
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Query: 67 IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
+ LSSCD+ AAQ++ E+A D+RG LLLP++PAIAWVL+NILQPALNQINRM+
Sbjct: 73 LIGALSSCDSTAAAQEVMELAASDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA- 131
Query: 127 GVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAA-SDSRGQLLLIVVTPAILWVLYN 185
G++ GLG +S P A A A+AA +D+R LLLIVV PAI WVL+N
Sbjct: 132 GLVAFAGLGAAGGAAFLSNPEEAHAEQLVFDLAAKAANNDNRRLLLLIVVIPAIGWVLFN 191
Query: 186 ILQPALNQINRMRS 199
ILQPALNQIN+MRS
Sbjct: 192 ILQPALNQINKMRS 205
>gi|168031467|ref|XP_001768242.1| PsbY photosystem II polypeptide [Physcomitrella patens subsp.
patens]
gi|162680420|gb|EDQ66856.1| PsbY photosystem II polypeptide [Physcomitrella patens subsp.
patens]
Length = 368
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 103/140 (73%), Gaps = 7/140 (5%)
Query: 61 TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120
A+AGA+F+ +++ ++A A+QQI +AEGDNR +ALL+P++PAI WVLFNIL+PALNQ++
Sbjct: 64 NALAGAMFAAMATSESALASQQIMALAEGDNRVVALLIPLVPAIGWVLFNILKPALNQVD 123
Query: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180
+M++ K ++ G + PHA AA E+A +A+ SD+RG +++ ++ PA+
Sbjct: 124 KMKAAKSLVAGA----GLGALALVAAPHAD-AAQEIAQVAD--SDARGLIIIGLLLPAVG 176
Query: 181 WVLYNILQPALNQINRMRSE 200
WVL+NIL+PALNQI +M+ +
Sbjct: 177 WVLFNILRPALNQIEKMQDQ 196
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 85/132 (64%), Gaps = 14/132 (10%)
Query: 77 AFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKG----VIIGL 132
A AAQ+IA +A+ D+RGL ++ ++PA+ WVLFNIL+PALNQIN + V G
Sbjct: 225 ADAAQEIATLADSDSRGLIIIGLLLPAVGWVLFNILKPALNQINNIVEGNDTGAPVKRGK 284
Query: 133 GLGGL-AATGL------MSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYN 185
GG+ ATG+ + P A A +V IA+ +D+R +LL ++ PAI WVL+N
Sbjct: 285 KFGGMIGATGISAAAMSLLAAPKADA---QVQEIAQLGADTRPLILLFILAPAIGWVLFN 341
Query: 186 ILQPALNQINRM 197
IL+PALNQ+++M
Sbjct: 342 ILKPALNQVDKM 353
>gi|115474555|ref|NP_001060874.1| Os08g0119800 [Oryza sativa Japonica Group]
gi|113622843|dbj|BAF22788.1| Os08g0119800, partial [Oryza sativa Japonica Group]
Length = 216
Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 87/115 (75%), Gaps = 7/115 (6%)
Query: 91 NRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHAS 150
NRGLALLLPI PAIAWVL+NILQPALNQ+NRMRS + V++ G AA ++ PP AS
Sbjct: 104 NRGLALLLPIAPAIAWVLYNILQPALNQLNRMRSEQ-VLVAGLGLGAAAGAGLAFPPEAS 162
Query: 151 AAASEVATIAEAAS-----DSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
AA EVA +A A+ D+RG LLL VV PAI WVLYNILQPALNQ+NRMRS+
Sbjct: 163 -AAQEVARLAAEAAAAEGGDNRGLLLLFVVAPAIAWVLYNILQPALNQLNRMRSD 216
>gi|42407913|dbj|BAD09053.1| putative photosystem II core complex proteins psbY, chloroplast
precursor (L-arginine metabolising enzyme) (L-AME)
[Oryza sativa Japonica Group]
gi|125559970|gb|EAZ05418.1| hypothetical protein OsI_27630 [Oryza sativa Indica Group]
gi|215686966|dbj|BAG90836.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695320|dbj|BAG90511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765812|dbj|BAG87509.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 87/115 (75%), Gaps = 7/115 (6%)
Query: 91 NRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHAS 150
NRGLALLLPI PAIAWVL+NILQPALNQ+NRMRS + V++ G AA ++ PP AS
Sbjct: 93 NRGLALLLPIAPAIAWVLYNILQPALNQLNRMRSEQ-VLVAGLGLGAAAGAGLAFPPEAS 151
Query: 151 AAASEVATIAEAAS-----DSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
AA EVA +A A+ D+RG LLL VV PAI WVLYNILQPALNQ+NRMRS+
Sbjct: 152 -AAQEVARLAAEAAAAEGGDNRGLLLLFVVAPAIAWVLYNILQPALNQLNRMRSD 205
>gi|168066658|ref|XP_001785251.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663156|gb|EDQ49937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 100/135 (74%), Gaps = 6/135 (4%)
Query: 65 GAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS 124
GA+F+ +++ ++A A+QQI +AEGDNR +ALL+P+IPAI WVLFNILQPALNQ+++MR
Sbjct: 9 GAMFAAMATSESAMASQQIMALAEGDNRVVALLIPLIPAIGWVLFNILQPALNQVDKMRG 68
Query: 125 TKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLY 184
K ++ GL A + PHA AA E A IA+ SD+RG +++ ++ PAI WVL+
Sbjct: 69 AKALVA---GAGLGAAATLMAAPHAD-AAQEFAQIAD--SDARGLIIVGLLLPAIGWVLF 122
Query: 185 NILQPALNQINRMRS 199
NIL+PALNQI +M++
Sbjct: 123 NILRPALNQIEKMQN 137
>gi|326491827|dbj|BAJ98138.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326494406|dbj|BAJ90472.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326515886|dbj|BAJ87966.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 205
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 99/140 (70%), Gaps = 6/140 (4%)
Query: 67 IFSTLSSCDAAFAAQQIAEIAEGD----NRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
F++L+S DAA A+Q+IA++A NRGL LL + PA+ WVL+NILQPALNQ+N+M
Sbjct: 66 FFTSLASSDAAMASQRIADVAAAAPADDNRGLLLLFVVAPALGWVLYNILQPALNQLNKM 125
Query: 123 RSTKGVIIGLGLGGLAATGLMSMPPHASAAASE--VATIAEAASDSRGQLLLIVVTPAIL 180
RS K ++ GLG+G AA GL ++P ASAA E A D+RG LLL VV PA+
Sbjct: 126 RSEKALVAGLGIGAAAAAGLAAVPEPASAAVQELAALAAVAPADDNRGLLLLFVVAPALG 185
Query: 181 WVLYNILQPALNQINRMRSE 200
WVLYNILQPALNQ+N+MRS
Sbjct: 186 WVLYNILQPALNQLNKMRSN 205
>gi|302781700|ref|XP_002972624.1| hypothetical protein SELMODRAFT_441880 [Selaginella moellendorffii]
gi|300160091|gb|EFJ26710.1| hypothetical protein SELMODRAFT_441880 [Selaginella moellendorffii]
Length = 272
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 103/143 (72%), Gaps = 4/143 (2%)
Query: 61 TAIAGAIFSTLSSCDAAFAAQ----QIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPAL 116
A+AGA+F+ L+S ++A AAQ ++A A+ D+RGLALL+P++PA+ WVLFNIL+P L
Sbjct: 55 NALAGAVFAALASVESASAAQQAVAELAAGADSDSRGLALLVPLVPAVGWVLFNILRPGL 114
Query: 117 NQINRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVT 176
NQ RM++ KGV IGLG G A S PPHA+AAA+ A SDSRG +L V+
Sbjct: 115 NQFERMKNAKGVAIGLGGLGAMAALAASTPPHAAAAAAAREIAELAESDSRGLAVLGVLV 174
Query: 177 PAILWVLYNILQPALNQINRMRS 199
PAI WVLYNIL+PALNQ +RM++
Sbjct: 175 PAIGWVLYNILRPALNQFDRMKA 197
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHA 149
D+RGLA+L ++PAI WVL+NIL+PALNQ +RM+++KGVI G AA
Sbjct: 163 DSRGLAVLGVLVPAIGWVLYNILRPALNQFDRMKASKGVIG-AIGIGAAAAAAGLGGAPE 221
Query: 150 SAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
+ AA+ + A SD+RG LLL+V+ PAI WVL+NIL+PALNQ+N M+S+
Sbjct: 222 AEAAAAQEIASIAESDNRGLLLLLVILPAIGWVLFNILKPALNQLNNMKSK 272
>gi|357144499|ref|XP_003573314.1| PREDICTED: photosystem II core complex proteins psbY,
chloroplastic-like [Brachypodium distachyon]
Length = 198
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 95/138 (68%), Gaps = 4/138 (2%)
Query: 67 IFSTLSSCDAAFAAQQIAEIAEGD----NRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
FS+L++ DAA AAQ++A++A NRGL LL+ + PA+AWVL+NILQPALNQ+N+M
Sbjct: 61 FFSSLATSDAAMAAQRVADMAAAAPADDNRGLLLLIVVSPALAWVLYNILQPALNQLNKM 120
Query: 123 RSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWV 182
RS K ++ GLGLG A A+ + +A A A D+RG LLL VV PA+ WV
Sbjct: 121 RSEKALVAGLGLGAAMAAAAPERASAAAGEIAAMAAAAAPADDNRGLLLLFVVAPALGWV 180
Query: 183 LYNILQPALNQINRMRSE 200
L+NILQPALNQ+ +MRS
Sbjct: 181 LFNILQPALNQLEKMRSN 198
>gi|302780609|ref|XP_002972079.1| hypothetical protein SELMODRAFT_441673 [Selaginella moellendorffii]
gi|300160378|gb|EFJ26996.1| hypothetical protein SELMODRAFT_441673 [Selaginella moellendorffii]
Length = 332
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 100/143 (69%), Gaps = 5/143 (3%)
Query: 61 TAIAGAIFSTLSSCDAAFAAQ----QIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPAL 116
A+AGA+F+ L+S ++A AAQ ++A A+ D+RGLALL+P++PA+ WVLFNIL+P L
Sbjct: 57 NALAGAVFAALASVESASAAQQAVAELAAGADSDSRGLALLVPLVPAVGWVLFNILRPGL 116
Query: 117 NQINRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVT 176
NQ RM++ KGV IGLG G A S P +AAA+ A SDSRG +L V+
Sbjct: 117 NQFERMKNAKGVAIGLGGLGAMAALAAST-PPHAAAAAAREIAELAESDSRGLAVLGVLV 175
Query: 177 PAILWVLYNILQPALNQINRMRS 199
PAI WVLYNIL+PALNQ +RM++
Sbjct: 176 PAIGWVLYNILRPALNQFDRMKA 198
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 87/111 (78%), Gaps = 3/111 (2%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHA 149
D+RGLA+L ++PAI WVL+NIL+PALNQ +RM+++KGVI +G+G AA + P
Sbjct: 164 DSRGLAVLGVLVPAIGWVLYNILRPALNQFDRMKASKGVIGAIGIGAAAAAAGLGGAPET 223
Query: 150 SAAAS-EVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
AAA+ E+A+IAE SD+RG LLL+V+ PAI WVL+NIL+PALNQ+N M+S
Sbjct: 224 EAAAAQEIASIAE--SDNRGLLLLLVILPAIGWVLFNILKPALNQLNNMKS 272
>gi|226510030|ref|NP_001147385.1| photosystem II core complex proteins psbY [Zea mays]
gi|195610810|gb|ACG27235.1| photosystem II core complex proteins psbY [Zea mays]
gi|413941745|gb|AFW74394.1| photosystem II core complex protein psbY [Zea mays]
Length = 191
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 80/113 (70%), Gaps = 4/113 (3%)
Query: 91 NRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHAS 150
+RG LL+ + PAI WVL+NILQPALNQ+NRMRS++ V G G AA M+ PP AS
Sbjct: 80 SRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAG-LGLGAAAAAGMAAPPEAS 138
Query: 151 AAASE---VATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
AA + A A DSRG LLLIVV PAI WVL+NILQPALNQ+NRMRS+
Sbjct: 139 AAVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 191
>gi|413941746|gb|AFW74395.1| hypothetical protein ZEAMMB73_053443, partial [Zea mays]
Length = 184
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 80/113 (70%), Gaps = 4/113 (3%)
Query: 91 NRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHAS 150
+RG LL+ + PAI WVL+NILQPALNQ+NRMRS++ V G G AA M+ PP AS
Sbjct: 73 SRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAG-LGLGAAAAAGMAAPPEAS 131
Query: 151 AAASE---VATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
AA + A A DSRG LLLIVV PAI WVL+NILQPALNQ+NRMRS+
Sbjct: 132 AAVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 184
>gi|226494570|ref|NP_001147391.1| photosystem II core complex proteins psbY [Zea mays]
gi|195610958|gb|ACG27309.1| photosystem II core complex proteins psbY [Zea mays]
Length = 176
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 80/112 (71%), Gaps = 5/112 (4%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHASA 151
RG LL+ + PAI WVL+NILQPALNQ+NRMRS++ V GLG AA M+ PP ASA
Sbjct: 67 RGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAA--GLGLGAAAAGMAAPPEASA 124
Query: 152 AASE---VATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
A + A A DSRG LLLIVV PAI WVL+NILQPALNQ+NRMRS+
Sbjct: 125 AVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 176
>gi|413921409|gb|AFW61341.1| photosystem II core complex protein psbY [Zea mays]
Length = 196
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 73/116 (62%), Gaps = 5/116 (4%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-----TKGVIIGLGLGGLAATGLMS 144
DNRG LL + PAI WVL+NILQPALNQ+NRMRS G+ A +
Sbjct: 81 DNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASAA 140
Query: 145 MPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
AA + A A A D+RG LLLIVVTPAI WVL+NILQPALNQINRM+S+
Sbjct: 141 AAAQDLAALAAAAAAAAPADDNRGLLLLIVVTPAIGWVLFNILQPALNQINRMKSD 196
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 35/39 (89%)
Query: 162 AASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
+ SD+RGQLLL VV PAI WVLYNILQPALNQ+NRMRS+
Sbjct: 78 SGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQ 116
>gi|226503427|ref|NP_001147739.1| photosystem II core complex proteins psbY [Zea mays]
gi|195613400|gb|ACG28530.1| photosystem II core complex proteins psbY [Zea mays]
Length = 196
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 73/116 (62%), Gaps = 5/116 (4%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-----TKGVIIGLGLGGLAATGLMS 144
DNRG LL + PAI WVL+NILQPALNQ+NRMRS G+ A +
Sbjct: 81 DNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASAA 140
Query: 145 MPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
AA + A A A D+RG LLLIVVTPAI WVL+NILQPALNQINRM+S+
Sbjct: 141 AAAQDLAALAAAAAAAAPADDNRGLLLLIVVTPAIGWVLFNILQPALNQINRMKSD 196
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 34/37 (91%)
Query: 164 SDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
SD+RGQLLL VV PAI WVLYNILQPALNQ+NRMRS+
Sbjct: 80 SDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQ 116
>gi|242080397|ref|XP_002444967.1| hypothetical protein SORBIDRAFT_07g002060 [Sorghum bicolor]
gi|241941317|gb|EES14462.1| hypothetical protein SORBIDRAFT_07g002060 [Sorghum bicolor]
Length = 203
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 76/114 (66%), Gaps = 3/114 (2%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHA 149
DNRG LL + PAI WVL+NILQPALNQ+NRMRS V A G+ S P +
Sbjct: 90 DNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAATAAGMASPPEAS 149
Query: 150 SAAASE---VATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
+AA+ + A A DSRG LLLIVV PAI WVL+NILQPALNQ+NRMRS+
Sbjct: 150 AAASVQDLAALAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 203
>gi|303283250|ref|XP_003060916.1| photosystem II PsbY protein [Micromonas pusilla CCMP1545]
gi|226457267|gb|EEH54566.1| photosystem II PsbY protein [Micromonas pusilla CCMP1545]
Length = 279
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 76 AAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRM-----RSTKGVII 130
A+ A++ ++++A D+R L L + PAI WVL+NIL P LNQ N M R KG+ +
Sbjct: 79 ASAASESLSQVAGFDSRALIFLGILGPAIGWVLYNILTPGLNQFNSMQEKNARGKKGIPL 138
Query: 131 GLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPA 190
GL GL+A L MP A AA + T A D+R L+ P + WV YNIL+P
Sbjct: 139 GL---GLSAAALAGMPEQADAATELMQT---AGLDAR-ILIFGAFVPVLGWVAYNILKPG 191
Query: 191 LNQINRMRSE 200
LNQI M+ +
Sbjct: 192 LNQIEDMQKK 201
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 75 DAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRM--RSTKGVIIGL 132
+ A AA ++ + A D R + + +P + WV +NIL+P LNQI M ++ K +
Sbjct: 152 EQADAATELMQTAGLDAR-ILIFGAFVPVLGWVAYNILKPGLNQIEDMQKKNAKKRGVAA 210
Query: 133 GLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALN 192
G+ GL+A L+ MP A AA + T A D+R L+ P + WV YNIL+P LN
Sbjct: 211 GVTGLSAAALLGMPEQADAATELMQT---AGLDAR-ILIFGAFVPVLGWVAYNILKPGLN 266
Query: 193 QINRMRSE 200
QI M+ +
Sbjct: 267 QIEDMQKK 274
>gi|384253820|gb|EIE27294.1| hypothetical protein COCSUDRAFT_52123 [Coccomyxa subellipsoidea
C-169]
Length = 286
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 31/163 (19%)
Query: 52 TDSSSLAAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI 111
T + A G + A+ DAA Q++A++A GD+R + +P I WVLFNI
Sbjct: 129 TKTRGAAVGVGLGAALLLASQKADAA---QEVAQLAAGDSRFAIIATLFLPVIGWVLFNI 185
Query: 112 LQPALNQ-------------------INRMRSTKGVIIGLGLGGLAATGLMSMPPHASAA 152
PALNQ IN+ R+ G I+GL +A L+++P + A
Sbjct: 186 GGPALNQLNNAANKNKSGVVKKVASKINKRRAVTGAIVGL-----SAASLLAVPQ--ADA 238
Query: 153 ASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQIN 195
A+EV +A A D+R ++ + P I WVL+NI PALNQ+N
Sbjct: 239 ANEVMQLA--AGDNRFGIIATLFLPVIGWVLFNIGGPALNQLN 279
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 8/120 (6%)
Query: 77 AFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-TKGVIIGLGLG 135
A AA ++A +A GDNR L L +PA+ WV FNI PALNQ+N M++ T+G +G+GLG
Sbjct: 82 AQAANELATLAAGDNRFGTLTLLALPALGWVAFNIGGPALNQLNNMKTKTRGAAVGVGLG 141
Query: 136 GLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQIN 195
+ + + AA EVA + AA DSR ++ + P I WVL+NI PALNQ+N
Sbjct: 142 -----AALLLASQKADAAQEVAQL--AAGDSRFAIIATLFLPVIGWVLFNIGGPALNQLN 194
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 62 AIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINR 121
AI G ++L + A AA ++ ++A GDNR + +P I WVLFNI PALNQ+N
Sbjct: 221 AIVGLSAASLLAVPQADAANEVMQLAAGDNRFGIIATLFLPVIGWVLFNIGGPALNQLNN 280
Query: 122 MRSTK 126
+ K
Sbjct: 281 AAAKK 285
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 152 AASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
AA+E+AT+A A D+R L ++ PA+ WV +NI PALNQ+N M+++
Sbjct: 84 AANELATLA--AGDNRFGTLTLLALPALGWVAFNIGGPALNQLNNMKTK 130
>gi|424513450|emb|CCO66072.1| possible psbY, PSII-Y, photosystem II polypeptide [Bathycoccus
prasinos]
Length = 239
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 63 IAGAIFSTLSSC-----DAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALN 117
+ GAI S L + ++A AA+Q+ G + +A+ P + WV +NIL P LN
Sbjct: 93 VGGAIGSALGASLTMQPESADAAEQVVGNLAGIDGRIAIFFVFAPVLGWVAYNILGPGLN 152
Query: 118 QINRMRSTKGVIIGL--GLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVV 175
Q+ M+ G+ GL GL+A LM+MP A AA V + A D R + V
Sbjct: 153 QLEDMQKKNAKKRGIVAGLTGLSAASLMAMPEQADAAEQVVGNL--AGIDGR-IAIFFVF 209
Query: 176 TPAILWVLYNILQPALNQINRMR 198
P + WV YNIL P L Q++ M+
Sbjct: 210 APVLGWVAYNILGPGLKQLDDMQ 232
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMR----STKGVIIGLGLGGLAATGLMSM 145
D R +A+ P + WV +NIL P L Q++ M+ KG I+G +G L
Sbjct: 51 DGR-IAIFFVFAPVLGWVAYNILGPGLKQLDDMQVKNAKRKG-IVGGAIGSALGASLTMQ 108
Query: 146 PPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
P A AA V +A D R + V P + WV YNIL P LNQ+ M+ +
Sbjct: 109 PESADAAEQVVGNLA--GIDGR-IAIFFVFAPVLGWVAYNILGPGLNQLEDMQKK 160
>gi|222639821|gb|EEE67953.1| hypothetical protein OsJ_25851 [Oryza sativa Japonica Group]
Length = 184
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 72/138 (52%), Gaps = 29/138 (21%)
Query: 71 LSSCDAAFAAQQIAEIAE---GDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKG 127
L+S DAA AAQQIA++A G R QP R+
Sbjct: 68 LASTDAALAAQQIADVAAAAGGCRR--------------------QPRAGVAAADRAGHR 107
Query: 128 VIIGLGLGGLAATGLMSMPPHASAAASEVATIAEA-----ASDSRGQLLLIVVTPAILWV 182
V++ G AA ++ PP ASAA EVA +A D+RG LLL VV PAI WV
Sbjct: 108 VLVAGLGLGAAAGAGLAFPPEASAA-QEVARLAAEAAAAEGGDNRGLLLLFVVAPAIAWV 166
Query: 183 LYNILQPALNQINRMRSE 200
LYNILQPALNQ+NRMRS+
Sbjct: 167 LYNILQPALNQLNRMRSD 184
>gi|57282599|emb|CAD27943.1| PsbY-like protein precursor [Oryza sativa]
Length = 205
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 91 NRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHAS 150
NRGLALLLPI PAIAWVL+NILQPALNQ+NRMRS + V++ G AA ++ P
Sbjct: 92 NRGLALLLPIAPAIAWVLYNILQPALNQLNRMRSEQ-VLVAGLGLGAAAGAGLAFRPXVX 150
Query: 151 AAAS---EVATIAEAASDSRGQLLLIVVTPAILWVLYNIL 187
A S A +RG L PAI WVLYNIL
Sbjct: 151 GAXSGXLXAEAAAAXGGXNRG-LXCCSWWPAIAWVLYNIL 189
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 166 SRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
+RG LL+ + PAI WVLYNILQPALNQ+NRMRSE
Sbjct: 92 NRGLALLLPIAPAIAWVLYNILQPALNQLNRMRSE 126
>gi|307107043|gb|EFN55287.1| hypothetical protein CHLNCDRAFT_134219 [Chlorella variabilis]
Length = 321
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 79 AAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK-GVIIGLGLGGL 137
AA ++A IA GDNR + +PA+ WVLFNIL P NQ++ M + K V GLGLG
Sbjct: 64 AAMEVANIAAGDNRFGTIAFLAVPALGWVLFNILGPLQNQLDAMDTKKRSVAAGLGLG-- 121
Query: 138 AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRM 197
AA+ L + A+ +++ AA D+R + +++ P + WVL+NIL P NQ++ M
Sbjct: 122 AASLLAAQNAEAAQQVADL-----AAGDNRFGTISLLLVPVVGWVLFNILGPLQNQLDAM 176
Query: 198 RSE 200
++
Sbjct: 177 DTK 179
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Query: 85 EIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK-GVIIGLGLGGLAATGLM 143
++A GDNR + L ++P + WVLFNIL P NQ++ M + K V GLGLG AA+ L
Sbjct: 139 DLAAGDNRFGTISLLLVPVVGWVLFNILGPLQNQLDAMDTKKRSVAAGLGLG--AASLLA 196
Query: 144 SMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
+ A+ +++ AA D+R + + P + WVL+NIL P NQ++ M +
Sbjct: 197 AQNAEAAQQVADL-----AAGDNRFGTIAFLALPVVGWVLFNILGPLQNQLDAMGDK 248
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 85 EIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRM--RSTKGVIIGLGLGGLAATGL 142
++A GDNR + +P + WVLFNIL P NQ++ M + + V GLGLG AA+ L
Sbjct: 208 DLAAGDNRFGTIAFLALPVVGWVLFNILGPLQNQLDAMGDKKKRSVAAGLGLG--AASLL 265
Query: 143 MSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
+ A+ +++ AA D+R + + P + WVL+NIL P NQ++ M +
Sbjct: 266 AAQNAEAAQQVADL-----AAGDNRFGTIAFLALPVVGWVLFNILGPLQNQLDAMGDK 318
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 85 EIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
++A GDNR + +P + WVLFNIL P NQ++ M K
Sbjct: 278 DLAAGDNRFGTIAFLALPVVGWVLFNILGPLQNQLDAMGDKK 319
>gi|255078442|ref|XP_002502801.1| photosystem II PsbY protein [Micromonas sp. RCC299]
gi|226518067|gb|ACO64059.1| photosystem II PsbY protein [Micromonas sp. RCC299]
Length = 191
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 15/141 (10%)
Query: 64 AGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR 123
A A+ + DAA A Q+A++ D R +A+ +P + WV +NIL P L Q+ +M+
Sbjct: 57 AAALMGMPEAADAATEAMQLADL---DAR-IAIFGAFVPVLGWVGYNILGPGLKQLEKMQ 112
Query: 124 ----STKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAI 179
KGV G+ GL+A LM M P A+ AA+E +A+ D+R + V P +
Sbjct: 113 QDAAKKKGVAAGV---GLSAAALMGM-PEAADAATEAMQLADL--DARIAIFGAFV-PVL 165
Query: 180 LWVLYNILQPALNQINRMRSE 200
WV YNIL P L Q+ +M+ +
Sbjct: 166 GWVGYNILGPGLKQLEKMQQD 186
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 85 EIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR----STKGVIIGLGLGGLAAT 140
++A+ D R +A+ +P + WV +NIL P L Q+ +M+ KGV G+GGL+A
Sbjct: 2 QLADLDAR-IAIFGAFVPVLGWVGYNILGPGLKQLEKMQQDAAKKKGVAA--GVGGLSAA 58
Query: 141 GLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200
LM M P A+ AA+E +A+ D+R + V P + WV YNIL P L Q+ +M+ +
Sbjct: 59 ALMGM-PEAADAATEAMQLADL--DARIAIFGAFV-PVLGWVGYNILGPGLKQLEKMQQD 114
>gi|145352511|ref|XP_001420585.1| possible psbY, PSII-Y, photosystem II polypeptide [Ostreococcus
lucimarinus CCE9901]
gi|144580820|gb|ABO98878.1| possible psbY, PSII-Y, photosystem II polypeptide [Ostreococcus
lucimarinus CCE9901]
Length = 416
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 52 TDSSSLAAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI 111
TD + G A A +++ D A AAQ++ + A D R L L P + WV +NI
Sbjct: 47 TDDDVVRRGQTAAMATAASMFFADRADAAQELMQTAL-DGRPLIFLAVFGPVLGWVAYNI 105
Query: 112 LQPALNQINRM-----RSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDS 166
L P L Q+ M +S+K G GGL A+ LM M P AS AA VA + A D
Sbjct: 106 LSPGLRQLENMQAVNAKSSKKRAAGALAGGLTASALMGM-PEASDAAQNVADL--AGIDG 162
Query: 167 RGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
R + V P + WV YNIL P L Q M+
Sbjct: 163 R-IAIFFVFAPVLGWVAYNILGPGLRQFEDMQK 194
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 75 DAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR----STKGVII 130
+A+ AA+Q+ E+A D R +A+ P + WV +NIL P L Q M+ KGV+
Sbjct: 218 EASDAAEQLGELAGIDGR-IAIFFVFAPVLGWVAYNILGPGLRQFEDMQKAAAKKKGVLA 276
Query: 131 GLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPA 190
G GL A G+ P AS AA E+ T+ A D R + V P + WV YNIL P
Sbjct: 277 GAGLSAAALMGM----PEASDAAQEIGTL--AGIDGR-IAIFFVFAPVLGWVAYNILGPG 329
Query: 191 LNQINRMRS 199
L Q M+
Sbjct: 330 LRQFEDMQK 338
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 54 SSSLAAGTAIAGAIFST--LSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI 111
SS A A+AG + ++ + +A+ AAQ +A++A D R +A+ P + WV +NI
Sbjct: 123 SSKKRAAGALAGGLTASALMGMPEASDAAQNVADLAGIDGR-IAIFFVFAPVLGWVAYNI 181
Query: 112 LQPALNQINRMR----STKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSR 167
L P L Q M+ KGV+ G GL A G+ P AS AA ++ + A D R
Sbjct: 182 LGPGLRQFEDMQKAAAKKKGVLAGAGLSAAALMGM----PEASDAAEQLGEL--AGIDGR 235
Query: 168 GQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
+ V P + WV YNIL P L Q M+
Sbjct: 236 -IAIFFVFAPVLGWVAYNILGPGLRQFEDMQK 266
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 75 DAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMR----STKGVII 130
+A+ AAQ+I +A D R +A+ P + WV +NIL P L Q M+ KGV+
Sbjct: 290 EASDAAQEIGTLAGIDGR-IAIFFVFAPVLGWVAYNILGPGLRQFEDMQKAAAKKKGVLA 348
Query: 131 GLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPA 190
G GL A G+ P AS AA ++ + A D R + V P + WV YNIL P
Sbjct: 349 GAGLSAAALMGM----PEASDAAEQLGEL--AGIDGR-IAIFFVFAPVLGWVAYNILGPG 401
Query: 191 LNQINRMRS 199
L Q M+
Sbjct: 402 LRQFEDMQK 410
>gi|308809794|ref|XP_003082206.1| manganese-binding protein PsbY precursor, photosystem
II-associated-s (ISS) [Ostreococcus tauri]
gi|116060674|emb|CAL57152.1| manganese-binding protein PsbY precursor, photosystem
II-associated-s (ISS) [Ostreococcus tauri]
Length = 265
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 60 GTAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQI 119
G A ++ +T+ D A AAQ++ ++A D R +A+ P + WV +NIL P L Q
Sbjct: 50 GQTAAMSLAATMLFADQAHAAQEVGDLAGIDGR-IAIFFVFAPVLGWVAYNILGPGLRQF 108
Query: 120 NRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAI 179
M+ G+ G + + P AS AA ++ + A D R + V P +
Sbjct: 109 EDMQKKNAKSKGVLAGAGLSAAALLGMPEASDAAEKLGDL--AGIDGR-IAIFFVFAPVL 165
Query: 180 LWVLYNILQPALNQINRMRSE 200
WV YNIL P L Q M+ +
Sbjct: 166 GWVAYNILGPGLRQFEDMQKK 186
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 75 DAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGL 134
+A+ AA+++ ++A D R +A+ P + WV +NIL P L Q M+ G+
Sbjct: 137 EASDAAEKLGDLAGIDGR-IAIFFVFAPVLGWVAYNILGPGLRQFEDMQKKNAKSKGVLA 195
Query: 135 GGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQ 193
G + + P AS AA ++ + A D R + V P + WV YNIL P Q
Sbjct: 196 GAGLSAAALLGMPEASDAAEKLGDL--AGIDGR-IAIFFVFAPVLGWVAYNILGPERGQ 251
>gi|159468934|ref|XP_001692627.1| ycf32-related polyprotein of photosystem II [Chlamydomonas
reinhardtii]
gi|158268654|gb|EDO95697.1| ycf32-related polyprotein of photosystem II [Chlamydomonas
reinhardtii]
Length = 354
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 17/142 (11%)
Query: 69 STLSSCDAAF-------AAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI---LQPALNQ 118
+TLSS A++ AA ++A +A DNR L ++P + WV FNI LQ LNQ
Sbjct: 5 ATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQ 64
Query: 119 INRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPA 178
++ ++ + V +G+G AA+ L + AS +E+AT+ AASD+R +L ++ P
Sbjct: 65 MDA-KNKRAVPAAVGMGA-AASLLFAQSAEAS---TEIATL--AASDNRVAILATLLVPV 117
Query: 179 ILWVLYNILQPALNQINRMRSE 200
I WV +NI Q+N+M ++
Sbjct: 118 IGWVGFNIFGSLQAQLNQMDAK 139
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 10/135 (7%)
Query: 69 STLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI---LQPALNQINRMRST 125
++L +A A+ +IA +A DNR L ++P I WV FNI LQ LNQ++ ++
Sbjct: 83 ASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDA-KNK 141
Query: 126 KGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYN 185
+ V +G+G AA+ L + AS +E+AT+ AASD+R +L ++ P I WV +N
Sbjct: 142 RAVPAAVGMGA-AASLLFAQSAEAS---TEIATL--AASDNRVAILATLLVPVIGWVGFN 195
Query: 186 ILQPALNQINRMRSE 200
I Q+N+M ++
Sbjct: 196 IFGSLQAQLNQMDAK 210
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 10/135 (7%)
Query: 69 STLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI---LQPALNQINRMRST 125
++L +A A+ +IA +A DNR L ++P I WV FNI LQ LNQ++ ++
Sbjct: 154 ASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDA-KNK 212
Query: 126 KGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYN 185
+ V +G+G AA+ L + AS +E+AT+ AASD+R +L ++ P I WV +N
Sbjct: 213 RAVPAAVGMGA-AASLLFAQSAEAS---TEIATL--AASDNRVAILATLLVPVIGWVGFN 266
Query: 186 ILQPALNQINRMRSE 200
I Q+N+M ++
Sbjct: 267 IFGSLQAQLNQMDAK 281
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 10/135 (7%)
Query: 69 STLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI---LQPALNQINRMRST 125
++L +A A+ +IA +A DNR L ++P I WV FNI LQ LNQ++ ++
Sbjct: 225 ASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDA-KNK 283
Query: 126 KGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYN 185
+ V +G+G AA+ L + AS +E+AT+ AASD+R +L ++ P I WV +N
Sbjct: 284 RAVPAAVGMGA-AASLLFAQSAEAS---TEIATL--AASDNRVAILATLLVPVIGWVGFN 337
Query: 186 ILQPALNQINRMRSE 200
I Q+ +M ++
Sbjct: 338 IFGSLQAQLRQMDAK 352
>gi|159480536|ref|XP_001698338.1| Ycf32-related subunit of photosystem II [Chlamydomonas reinhardtii]
gi|158282078|gb|EDP07831.1| Ycf32-related subunit of photosystem II [Chlamydomonas reinhardtii]
Length = 260
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 20/140 (14%)
Query: 69 STLSSCDAAF-------AAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI---LQPALNQ 118
+TLSS A++ AA ++A +A DNR L ++P + WV FNI LQ LNQ
Sbjct: 53 ATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQ 112
Query: 119 INRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPA 178
++ ++ + V +G+G AA+ L + AS +E+AT+ AASD+R +L ++ P
Sbjct: 113 MD-AKNKRAVPAAVGMGA-AASLLFAQSAEAS---TEIATL--AASDNRVAILATLLVPV 165
Query: 179 ILWVLYNI---LQPALNQIN 195
+ WV +NI LQ LNQ++
Sbjct: 166 MGWVGFNIFGSLQAQLNQMD 185
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 13/128 (10%)
Query: 74 CDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI---LQPALNQINRMRSTKGVII 130
+A A+ +IA +A DNR L ++P + WV FNI LQ LNQ++ ++ + V
Sbjct: 136 AQSAEASTEIATLAASDNRVAILATLLVPVMGWVGFNIFGSLQAQLNQMD-AKNKRAVPA 194
Query: 131 GLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNI---L 187
+G+G AA+ L + AS +E+AT+ AASD+R +L ++ P I WV +NI L
Sbjct: 195 AVGMGA-AASLLFAQSAEAS---TEIATL--AASDNRVAILATLLVPVIGWVGFNIFGSL 248
Query: 188 QPALNQIN 195
Q L+Q++
Sbjct: 249 QAQLSQMD 256
>gi|87247459|gb|ABD35812.1| putative chloroplast PsbY protein [Populus x canadensis]
Length = 59
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
Query: 1 MAAAMATTAVLNAKCFSISSPKSSIKPG-TTKPTSPLSMQNLPKGLTVSSKPTDSSSL 57
MAA MAT A+LNAKC SI+S K+ P +TKP S LSM NLPKGLT+ SKP D++ L
Sbjct: 1 MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTI-SKPADNTVL 57
>gi|255540411|ref|XP_002511270.1| conserved hypothetical protein [Ricinus communis]
gi|223550385|gb|EEF51872.1| conserved hypothetical protein [Ricinus communis]
Length = 130
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 46/70 (65%), Gaps = 12/70 (17%)
Query: 62 AIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINR 121
A+AGA S LSSCD+A AAQQIA+IAE DNRG ALLLPII AI WVL N
Sbjct: 2 AVAGAKLSMLSSCDSAMAAQQIADIAESDNRGFALLLPIILAILWVLNN----------- 50
Query: 122 MRSTKGVIIG 131
RS KG +G
Sbjct: 51 -RSGKGRRVG 59
>gi|302858135|ref|XP_002960025.1| hypothetical protein VOLCADRAFT_108813 [Volvox carteri f.
nagariensis]
gi|300253526|gb|EFJ38910.1| hypothetical protein VOLCADRAFT_108813 [Volvox carteri f.
nagariensis]
Length = 207
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 18/134 (13%)
Query: 76 AAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNI---LQPALNQIN------RMRSTK 126
+A A+ ++A +A DNR + +PA+ WV FNI LQ L+Q++ R R+
Sbjct: 80 SAEASTELATLAANDNRLGIIATLFVPALGWVAFNILGGLQAQLDQMSVKNGPARKRAVP 139
Query: 127 GVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNI 186
I + ++ A++E+AT+ AA+D+R ++ + PA+ WV +NI
Sbjct: 140 AAIG-------LGAAATLLAAQSAEASTELATL--AANDNRLGIIATLFVPALGWVAFNI 190
Query: 187 LQPALNQINRMRSE 200
L Q+++M ++
Sbjct: 191 LGGLQAQLDQMSAK 204
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 90 DNRGLALLLPIIPAIAWVLFNI---LQPALNQI------NRMRSTKGVIIGLGLGGLAAT 140
DNR + +PA+ WV FNI LQ L+Q+ R R+ I
Sbjct: 19 DNRLGIIATLFVPALGWVAFNILGGLQAQLDQMSAKSDPKRKRAVPAAIG-------LGA 71
Query: 141 GLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRM 197
+ ++ A++E+AT+ AA+D+R ++ + PA+ WV +NIL Q+++M
Sbjct: 72 AATLLAAQSAEASTELATL--AANDNRLGIIATLFVPALGWVAFNILGGLQAQLDQM 126
>gi|302831642|ref|XP_002947386.1| hypothetical protein VOLCADRAFT_103469 [Volvox carteri f.
nagariensis]
gi|300267250|gb|EFJ51434.1| hypothetical protein VOLCADRAFT_103469 [Volvox carteri f.
nagariensis]
Length = 194
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 90 DNRGLALLLPIIPAIAWVLFNI---LQPALNQI------NRMRSTKGVIIGLGLGGLAAT 140
DNR + +PA+ WV FNI LQ L+Q+ R R+ I
Sbjct: 82 DNRLGIIATLFVPALGWVAFNILGGLQAQLDQMSAKSDPKRKRAVPAAIG-------LGA 134
Query: 141 GLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRM 197
+ ++ A++E+AT+ AA+D+R ++ + PA+ WV +NIL Q+++M
Sbjct: 135 AATLLAAQSAEASTELATL--AANDNRLGIIATLFVPALGWVAFNILGGLQAQLDQM 189
>gi|123966441|ref|YP_001011522.1| photosystem II protein Y [Prochlorococcus marinus str. MIT 9515]
gi|166224916|sp|A2BXA4.1|PSBY_PROM5 RecName: Full=Photosystem II protein Y
gi|123200807|gb|ABM72415.1| possible Photosystem II reaction center Y protein (PsbY)
[Prochlorococcus marinus str. MIT 9515]
Length = 39
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R L + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RTLVVFAPIIAALAWVIFNIQKPAREQFNR 32
>gi|299890946|gb|ADJ57445.1| hypothetical protein EmhuCp074 [uncultured prymnesiophyte C19847]
Length = 36
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 89 GDNRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
GD R L +L P++ A AW LFNI + AL Q+ RM
Sbjct: 2 GDTRLLVVLFPLVAAAAWALFNIGRLALQQLKRM 35
>gi|52076712|dbj|BAD45625.1| hypothetical protein [Oryza sativa Japonica Group]
gi|53793280|dbj|BAD54502.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 188
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 46 TVSSKPTDSSSLAAGTAIAGAIFSTLSSCDAAFAAQQIAEIAEG----DNRGLALLLPII 101
+++ K SS+ +AG FS L S D A QQI +A DNRGL L LPI
Sbjct: 129 SLTKKGLSMSSVLVAAVMAGVFFSALVSTDTA---QQITNVAAAAGADDNRGLVLPLPIT 185
Query: 102 PAI 104
P+I
Sbjct: 186 PSI 188
>gi|33861673|ref|NP_893234.1| photosystem II protein Y [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|37999887|sp|P59907.1|PSBY_PROMP RecName: Full=Photosystem II protein Y
gi|33640041|emb|CAE19576.1| possible Photosystem II reaction center Y protein (PsbY)
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 38
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R + + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RAIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>gi|123968756|ref|YP_001009614.1| photosystem II protein Y [Prochlorococcus marinus str. AS9601]
gi|166224917|sp|A2BRU6.1|PSBY_PROMS RecName: Full=Photosystem II protein Y
gi|123198866|gb|ABM70507.1| possible Photosystem II reaction center Y protein (PsbY)
[Prochlorococcus marinus str. AS9601]
Length = 38
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R + + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RTIVVFAPIIAALAWVIFNIQKPAREQFNR 32
>gi|157413588|ref|YP_001484454.1| photosystem II protein Y [Prochlorococcus marinus str. MIT 9215]
gi|254526787|ref|ZP_05138839.1| putative Photosystem II reaction center Y protein (PsbY)
[Prochlorococcus marinus str. MIT 9202]
gi|167011890|sp|A8G5I7.1|PSBY_PROM2 RecName: Full=Photosystem II protein Y
gi|157388163|gb|ABV50868.1| possible Photosystem II reaction center Y protein (PsbY)
[Prochlorococcus marinus str. MIT 9215]
gi|221538211|gb|EEE40664.1| putative Photosystem II reaction center Y protein (PsbY)
[Prochlorococcus marinus str. MIT 9202]
Length = 38
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R + + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RTIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>gi|126696562|ref|YP_001091448.1| photosystem II protein Y [Prochlorococcus marinus str. MIT 9301]
gi|126543605|gb|ABO17847.1| possible Photosystem II reaction center Y protein (PsbY)
[Prochlorococcus marinus str. MIT 9301]
Length = 42
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R + + PII A+AWV+FNI +PA Q NR
Sbjct: 7 RTIVVFAPIIAALAWVIFNIQKPAREQFNR 36
>gi|71842294|ref|YP_277382.1| hypothetical protein EmhuCp074 [Emiliania huxleyi]
gi|122220085|sp|Q4G385.1|PSBY_EMIHU RecName: Full=Photosystem II protein Y
gi|60101537|gb|AAX13881.1| unknown [Emiliania huxleyi]
Length = 35
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
D R L +LLP+ A AW LFNI + AL Q+ RM
Sbjct: 2 DTRLLVVLLPVATAAAWALFNIGRLALQQLKRM 34
>gi|78779511|ref|YP_397623.1| photosystem II protein Y [Prochlorococcus marinus str. MIT 9312]
gi|123554075|sp|Q31AA8.1|PSBY_PROM9 RecName: Full=Photosystem II protein Y
gi|78713010|gb|ABB50187.1| photosystem II reaction center Y protein (PsbY)-like protein
[Prochlorococcus marinus str. MIT 9312]
Length = 37
Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
R + + PII A+AWV+FNI +PA Q +R K
Sbjct: 3 RAIVVFAPIIAAVAWVVFNIQKPAREQWDRQFGEK 37
>gi|261408004|ref|YP_003244245.1| hypothetical protein GYMC10_4211 [Paenibacillus sp. Y412MC10]
gi|261284467|gb|ACX66438.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
Length = 676
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 26 KPGTTKPTSPLSMQNLPKGL---TVSSKPTDSSSLAAGTAIAGAIFSTLSSCDA----AF 78
+PG T P +P Q + +G+ T++S P+ SSLA + G + LSS DA
Sbjct: 459 QPGLTHPVTPTVQQQITQGVHPATMASGPSGDSSLALQDTLKGVLLQVLSSQDAPPALKE 518
Query: 79 AAQQI 83
AAQQ+
Sbjct: 519 AAQQV 523
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,721,793,806
Number of Sequences: 23463169
Number of extensions: 98435680
Number of successful extensions: 493203
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 492728
Number of HSP's gapped (non-prelim): 287
length of query: 200
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 65
effective length of database: 9,191,667,552
effective search space: 597458390880
effective search space used: 597458390880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)