BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029024
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY, chloroplastic
OS=Spinacia oleracea GN=PSBY PE=1 SV=2
Length = 199
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 141/197 (71%), Gaps = 14/197 (7%)
Query: 10 VLNAKCFSISSPKSSIKPGTTKPTS-PLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGAIF 68
VLN KC ++++ K++ + KPTS P+S+ P GL+ S P S + AIAGA+F
Sbjct: 11 VLNTKCLTLNTNKTTST--SPKPTSKPISLS--PLGLSNSKLPMGLSPIITAPAIAGAVF 66
Query: 69 STLSSCDAAFAAQQIAEIA----EGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS 124
+TL S D AFA QQ+A+IA DNRGLALLLPIIPA+ WVLFNILQPALNQIN+MR+
Sbjct: 67 ATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRN 126
Query: 125 -TKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 183
K I+GLGL GLA +GL+ P A AA+ E+A SD+RG LLL+VV PAI WVL
Sbjct: 127 EKKAFIVGLGLSGLATSGLLLATPEAQAASEEIAR----GSDNRGTLLLLVVLPAIGWVL 182
Query: 184 YNILQPALNQINRMRSE 200
+NILQPALNQ+N+MRS+
Sbjct: 183 FNILQPALNQLNKMRSQ 199
>sp|O49347|PSBY_ARATH Photosystem II core complex proteins psbY, chloroplastic
OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1
Length = 189
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 126/175 (72%), Gaps = 13/175 (7%)
Query: 34 SPLSMQNLPKG---LTVSSKPTDSSSLAA-GTAIAGAIFSTLSSCDAAFAAQQIAEIA-- 87
SP +QN K +++ + P + SLA TA+AGA+FS+LS + A A QQIA++A
Sbjct: 17 SPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAA 76
Query: 88 --EGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK-GVIIGLGLGGLAATGLMS 144
DNRGLALLLPI+PAIAWVL+NILQPA+NQ+N+MR +K V+ GGLAA+GL++
Sbjct: 77 NASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLT 136
Query: 145 MPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199
A A A A+SDSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct: 137 ----PPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187
>sp|A2BXA4|PSBY_PROM5 Photosystem II protein Y OS=Prochlorococcus marinus (strain MIT
9515) GN=psbY PE=3 SV=1
Length = 39
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R L + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RTLVVFAPIIAALAWVIFNIQKPAREQFNR 32
>sp|P59907|PSBY_PROMP Photosystem II protein Y OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=psbY PE=3 SV=1
Length = 38
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R + + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RAIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>sp|A2BRU6|PSBY_PROMS Photosystem II protein Y OS=Prochlorococcus marinus (strain AS9601)
GN=psbY PE=3 SV=1
Length = 38
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R + + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RTIVVFAPIIAALAWVIFNIQKPAREQFNR 32
>sp|A8G5I7|PSBY_PROM2 Photosystem II protein Y OS=Prochlorococcus marinus (strain MIT
9215) GN=psbY PE=3 SV=1
Length = 38
Score = 38.5 bits (88), Expect = 0.027, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINR 121
R + + PII A+AWV+FNI +PA Q NR
Sbjct: 3 RTIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>sp|Q4G385|PSBY_EMIHU Photosystem II protein Y OS=Emiliania huxleyi GN=psbY PE=3 SV=1
Length = 35
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
D R L +LLP+ A AW LFNI + AL Q+ RM
Sbjct: 2 DTRLLVVLLPVATAAAWALFNIGRLALQQLKRM 34
>sp|Q31AA8|PSBY_PROM9 Photosystem II protein Y OS=Prochlorococcus marinus (strain MIT
9312) GN=psbY PE=3 SV=1
Length = 37
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 92 RGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
R + + PII A+AWV+FNI +PA Q +R K
Sbjct: 3 RAIVVFAPIIAAVAWVVFNIQKPAREQWDRQFGEK 37
>sp|A9BEK7|PSBY_PROM4 Photosystem II protein Y OS=Prochlorococcus marinus (strain MIT
9211) GN=psbY PE=3 SV=1
Length = 41
Score = 33.9 bits (76), Expect = 0.66, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 94 LALLLPIIPAIAWVLFNILQPALNQINR 121
+ ++LPI+ A+ WV+FNI +PA Q+ R
Sbjct: 5 IVVVLPILAAVTWVVFNIQKPAREQLAR 32
>sp|B1XLQ0|PSBY_SYNP2 Photosystem II protein Y OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=psbY PE=3 SV=1
Length = 38
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126
D R + +L P+I A +W +FNI ALNQ+ M++ K
Sbjct: 2 DWRVVVVLAPVIIAGSWAIFNIAAAALNQLRNMQTKK 38
>sp|Q1XDT1|PSBY_PORYE Photosystem II protein Y OS=Porphyra yezoensis GN=psbY PE=3 SV=1
Length = 36
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS 124
D+R L +L+P++ A +W ++NI + AL Q +M S
Sbjct: 2 DSRLLVVLIPVLAAASWAVYNIGRVALQQFRKMTS 36
>sp|P51206|PSBY_PORPU Photosystem II protein Y OS=Porphyra purpurea GN=psbY PE=3 SV=1
Length = 36
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS 124
D+R L +L+P++ A +W ++NI + AL Q +M S
Sbjct: 2 DSRLLIVLIPVLAAASWAVYNIGRVALQQFRKMTS 36
>sp|Q5N047|PSBY_SYNP6 Photosystem II protein Y OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=psbY PE=3 SV=1
Length = 40
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINR 121
D R + +L PI+ A W +FNI + AL QINR
Sbjct: 2 DWRLIVVLAPILLAGGWAVFNIGKAALEQINR 33
>sp|Q31LS7|PSBY_SYNE7 Photosystem II protein Y OS=Synechococcus elongatus (strain PCC
7942) GN=psbY PE=3 SV=1
Length = 40
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINR 121
D R + +L PI+ A W +FNI + AL QINR
Sbjct: 2 DWRLIVVLAPILLAGGWAVFNIGKAALEQINR 33
>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=prp5 PE=3 SV=1
Length = 1192
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 17 SISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGT-------AIAGAIFS 69
++ SPKS + P T +P + + PK + ++ PT S+ L G A A A FS
Sbjct: 218 AVGSPKSPVTPTTDATPAPYAGKFDPKAIKRNAAPTPSAPLVLGNDVAVPQIAKASATFS 277
Query: 70 TLSS 73
++++
Sbjct: 278 SMNN 281
>sp|B7LWB6|CLCA_ESCF3 H(+)/Cl(-) exchange transporter ClcA OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=clcA
PE=3 SV=1
Length = 473
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 94 LALLLPIIPAIAWVLFNI----LQPALNQINRMRSTKGVIIGLGLGGLAATGLMSM-PPH 148
L L+L II I +FN +Q L++++ TK VI+G +GGL GL+ P
Sbjct: 254 LYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVIMGGAIGGLC--GLLGFVAPA 311
Query: 149 ASAAASEVATIAEAASDSRGQLLLIVVTPAI 179
S + IA A + S G L+ I V I
Sbjct: 312 TSGGGFNLIPIATAGNFSMGMLVFIFVARVI 342
>sp|O78433|PSBY_GUITH Photosystem II protein Y OS=Guillardia theta GN=psbY PE=3 SV=1
Length = 37
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
D R L +LLP++ A +W FNI + AL Q++R+
Sbjct: 2 DMRLLIVLLPVLAAASWAGFNIARIALRQLSRL 34
>sp|Q9VI75|PICA_DROME Phosphatidylinositol-binding clathrin assembly protein LAP
OS=Drosophila melanogaster GN=lap PE=1 SV=3
Length = 468
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 43 KGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDAAFAAQQIAE 85
+ ++ ++ PT SSS A GTA A + F T + D AQ +AE
Sbjct: 302 RKVSAANTPTQSSSSAFGTAAASSKFDTTNGIDEQLKAQVLAE 344
>sp|A0T0V3|PSBY_THAPS Photosystem II protein Y OS=Thalassiosira pseudonana GN=psbY-A PE=3
SV=1
Length = 36
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
D R L + P++ A +W LFNI + A+ QI R+
Sbjct: 2 DTRLLVIAAPVLVAASWALFNIGRLAIQQIQRL 34
>sp|Q6B935|PSBY_GRATL Photosystem II protein Y OS=Gracilaria tenuistipitata var. liui
GN=psbY PE=3 SV=1
Length = 34
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
D R L +LLP++ A +W L+NI + AL Q M
Sbjct: 2 DIRLLIVLLPVLAAASWALYNIGRVALQQFRSM 34
>sp|P49543|PSBY_ODOSI Photosystem II protein Y OS=Odontella sinensis GN=psbY-A PE=3 SV=1
Length = 36
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 90 DNRGLALLLPIIPAIAWVLFNILQPALNQINRM 122
D+R L + P++ A +W LFNI + A+ QI R+
Sbjct: 2 DSRLLVIAAPLLVAASWALFNIGRLAIQQIQRL 34
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,404,046
Number of Sequences: 539616
Number of extensions: 2187501
Number of successful extensions: 9868
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9782
Number of HSP's gapped (non-prelim): 92
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)