Query 029024
Match_columns 200
No_of_seqs 104 out of 115
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 06:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00063 photosystem II core c 100.0 2.4E-73 5.2E-78 478.5 17.3 193 5-200 1-194 (194)
2 PLN00063 photosystem II core c 99.8 1.9E-20 4.2E-25 158.6 7.3 68 129-200 53-120 (194)
3 PF06298 PsbY: Photosystem II 99.7 3.3E-18 7.2E-23 112.5 4.5 36 89-124 1-36 (36)
4 CHL00196 psbY photosystem II p 99.7 7.7E-18 1.7E-22 110.9 4.4 36 89-124 1-36 (36)
5 PRK13240 pbsY photosystem II p 99.7 1.3E-17 2.8E-22 111.7 4.5 38 89-126 1-38 (40)
6 PF06298 PsbY: Photosystem II 99.5 5.2E-14 1.1E-18 92.8 4.0 34 165-198 2-35 (36)
7 CHL00196 psbY photosystem II p 99.4 4.2E-13 9E-18 88.6 3.9 35 165-199 2-36 (36)
8 PRK13240 pbsY photosystem II p 99.2 9.1E-12 2E-16 83.7 3.7 35 165-199 2-36 (40)
9 PF14975 DUF4512: Domain of un 46.7 19 0.00041 28.0 2.6 20 174-193 6-25 (88)
10 PF10658 DUF2484: Protein of u 35.1 26 0.00057 26.7 1.7 19 167-185 30-48 (77)
11 PF03463 eRF1_1: eRF1 domain 1 32.5 17 0.00036 28.5 0.3 23 168-190 14-36 (132)
12 COG2956 Predicted N-acetylgluc 26.8 86 0.0019 30.2 3.9 38 92-132 3-43 (389)
13 PF13400 Tad: Putative Flp pil 25.2 1.6E+02 0.0034 19.2 4.0 23 94-117 8-30 (48)
14 COG3447 Predicted integral mem 22.0 58 0.0013 30.3 1.8 30 170-199 94-123 (308)
No 1
>PLN00063 photosystem II core complex proteins psbY; Provisional
Probab=100.00 E-value=2.4e-73 Score=478.46 Aligned_cols=193 Identities=72% Similarity=1.034 Sum_probs=179.4
Q ss_pred hhHHHHhhhhhhccCCCCCCCCC-CCCCCCCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHhhcCchHHHHHHHH
Q 029024 5 MATTAVLNAKCFSISSPKSSIKP-GTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDAAFAAQQI 83 (200)
Q Consensus 5 iatma~l~~k~~~~~~~~~~~~~-~~~~~~~~~s~~~~~k~l~~~s~~~~~~~~~a~~alAga~f~~L~~~~~A~Aaqqi 83 (200)
|+||+|+|+||+++|+||+++++ +++||.+.+|++++|||+++++.+. +...++++++|++|++|+++|+++|+|||
T Consensus 1 ~atma~l~~k~~~~~~~~~~~~~~~~~~p~~~~~~~~~pk~~~~~~~~~--~~~v~~~~laga~~s~l~~~~~A~AAq~i 78 (194)
T PLN00063 1 MATMAALATKCLSINARKNPNPSKTKTKPIILLSMQNKPKGLTISKSAD--NTNVAGTAIAGAIFSALSSSEPALAAQQI 78 (194)
T ss_pred CchHHHhhhHHhhcCCCCCCCCCCCCCCccccccccccccccccccccc--hhHHHHHHHHHHHHHhhcCCcHHHHHHHH
Confidence 67999999999999999999976 8899999999999999999885543 34688999999999999999999999999
Q ss_pred HHHhccccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccchhHHHhhhHHHHhhhcCCChhhhHHHHHHHHHHHHh
Q 029024 84 AEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAA 163 (200)
Q Consensus 84 a~lA~~D~RlliVl~Pil~A~gWalfNIg~pAl~Qlq~m~~kKgv~ag~gLgaaa~sgl~~~~p~Aa~aa~eia~~A~Aa 163 (200)
+|+|+.|+|+++|++|+++|+|||+|||++++++|+|||+++|||++|+|||+++.+|++. .|+.+++++|++++|+.+
T Consensus 79 a~~A~~D~R~liVl~Pil~AigWalfNIg~~Al~Qlq~m~s~kgv~aglGLgaaA~~g~l~-~~p~A~Aa~e~~~~A~~~ 157 (194)
T PLN00063 79 AELAEGDNRGLALLLPIIPAIAWVLFNILQPALNQVNKMRETKGVVAGLGLGGLAASGFMA-APPEASAAEEIAMIAAAA 157 (194)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhccceeeecchHHHhhccccc-CCcchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999899887 345455569999999877
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhhHHHHHHHhhhcC
Q 029024 164 SDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200 (200)
Q Consensus 164 ~DnRg~~ll~v~~PaigWVlyNIl~PalnQlnrMr~~ 200 (200)
+||||+++++||+|+||||+||||||+||||||||++
T Consensus 158 ~D~Rg~lll~v~~PaigWVlyNIL~PalnQin~Mrs~ 194 (194)
T PLN00063 158 SDSRGLLLLIVVAPAILWVLYNILQPALNQINKMRSD 194 (194)
T ss_pred CCccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999986
No 2
>PLN00063 photosystem II core complex proteins psbY; Provisional
Probab=99.82 E-value=1.9e-20 Score=158.62 Aligned_cols=68 Identities=46% Similarity=0.774 Sum_probs=61.8
Q ss_pred hHHHhhhHHHHhhhcCCChhhhHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhhhHHHHHHHhhhcC
Q 029024 129 IIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 200 (200)
Q Consensus 129 ~ag~gLgaaa~sgl~~~~p~Aa~aa~eia~~A~Aa~DnRg~~ll~v~~PaigWVlyNIl~PalnQlnrMr~~ 200 (200)
++|++++|+++++|.+ +++++++||++++| ++|+|+++++++++|++|||+|||++|++||+|||+++
T Consensus 53 v~~~~laga~~s~l~~--~~~A~AAq~ia~~A--~~D~R~liVl~Pil~AigWalfNIg~~Al~Qlq~m~s~ 120 (194)
T PLN00063 53 VAGTAIAGAIFSALSS--SEPALAAQQIAELA--EGDNRGLALLLPIIPAIAWVLFNILQPALNQVNKMRET 120 (194)
T ss_pred HHHHHHHHHHHHhhcC--CcHHHHHHHHHHHh--ccCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 8899999999999887 55567779999996 48999999999999999999999999999999999964
No 3
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=99.73 E-value=3.3e-18 Score=112.55 Aligned_cols=36 Identities=56% Similarity=0.829 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 029024 89 GDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS 124 (200)
Q Consensus 89 ~D~RlliVl~Pil~A~gWalfNIg~pAl~Qlq~m~~ 124 (200)
||+|+++|++|+++|+|||+|||+++|++|+|||.|
T Consensus 1 mD~R~liVl~Pil~A~gWa~fNIg~~Al~Q~~~~~~ 36 (36)
T PF06298_consen 1 MDWRLLIVLLPILPAAGWALFNIGRAALNQLQRMLN 36 (36)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999974
No 4
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=99.71 E-value=7.7e-18 Score=110.87 Aligned_cols=36 Identities=39% Similarity=0.660 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 029024 89 GDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS 124 (200)
Q Consensus 89 ~D~RlliVl~Pil~A~gWalfNIg~pAl~Qlq~m~~ 124 (200)
||+|+++|++|+++|+||++|||+++|++|+|+|++
T Consensus 1 mD~RlliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~~ 36 (36)
T CHL00196 1 MDTRLLVIAAPVLAAASWALFNIGRLAIQQIQRLSR 36 (36)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999974
No 5
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=99.70 E-value=1.3e-17 Score=111.75 Aligned_cols=38 Identities=39% Similarity=0.561 Sum_probs=36.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccc
Q 029024 89 GDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRSTK 126 (200)
Q Consensus 89 ~D~RlliVl~Pil~A~gWalfNIg~pAl~Qlq~m~~kK 126 (200)
||+|+++|++|+++|+||++||||++|++|+|+|.+|+
T Consensus 1 mD~RlliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~~~~ 38 (40)
T PRK13240 1 IDLRLLIVLAPILAAAGWAVFNIGKAAREQFQRFLNRK 38 (40)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 79999999999999999999999999999999998764
No 6
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=99.46 E-value=5.2e-14 Score=92.79 Aligned_cols=34 Identities=44% Similarity=0.668 Sum_probs=33.0
Q ss_pred cccchhhhHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 029024 165 DSRGQLLLIVVTPAILWVLYNILQPALNQINRMR 198 (200)
Q Consensus 165 DnRg~~ll~v~~PaigWVlyNIl~PalnQlnrMr 198 (200)
|.|+++++++++|++|||+|||++|++||++||-
T Consensus 2 D~R~liVl~Pil~A~gWa~fNIg~~Al~Q~~~~~ 35 (36)
T PF06298_consen 2 DWRLLIVLLPILPAAGWALFNIGRAALNQLQRML 35 (36)
T ss_pred CchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 8999999999999999999999999999999984
No 7
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=99.38 E-value=4.2e-13 Score=88.56 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=34.1
Q ss_pred cccchhhhHHHHHHHHHHHHHhhhHHHHHHHhhhc
Q 029024 165 DSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199 (200)
Q Consensus 165 DnRg~~ll~v~~PaigWVlyNIl~PalnQlnrMr~ 199 (200)
|.|++++++++++++||++|||.+|+++|++||++
T Consensus 2 D~RlliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~~ 36 (36)
T CHL00196 2 DTRLLVIAAPVLAAASWALFNIGRLAIQQIQRLSR 36 (36)
T ss_pred ChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999985
No 8
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=99.22 E-value=9.1e-12 Score=83.68 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=33.7
Q ss_pred cccchhhhHHHHHHHHHHHHHhhhHHHHHHHhhhc
Q 029024 165 DSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 199 (200)
Q Consensus 165 DnRg~~ll~v~~PaigWVlyNIl~PalnQlnrMr~ 199 (200)
|-|.+++++++++++||++|||.+|+++|++||.+
T Consensus 2 D~RlliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~~ 36 (40)
T PRK13240 2 DLRLLIVLAPILAAAGWAVFNIGKAAREQFQRFLN 36 (40)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 78999999999999999999999999999999975
No 9
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=46.73 E-value=19 Score=28.00 Aligned_cols=20 Identities=35% Similarity=0.845 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 029024 174 VVTPAILWVLYNILQPALNQ 193 (200)
Q Consensus 174 v~~PaigWVlyNIl~PalnQ 193 (200)
+|+|++.|+-+..|||-+=-
T Consensus 6 ivIPvLLwIykkFlqP~i~~ 25 (88)
T PF14975_consen 6 IVIPVLLWIYKKFLQPYIYP 25 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999997643
No 10
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=35.09 E-value=26 Score=26.72 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=16.9
Q ss_pred cchhhhHHHHHHHHHHHHH
Q 029024 167 RGQLLLIVVTPAILWVLYN 185 (200)
Q Consensus 167 Rg~~ll~v~~PaigWVlyN 185 (200)
|+.+++++-.|.+|||.|.
T Consensus 30 ~a~~Lia~g~pLlg~v~~~ 48 (77)
T PF10658_consen 30 PAYVLIAAGIPLLGWVTYQ 48 (77)
T ss_pred hHHHHHHHHhhHhhhhHhh
Confidence 6788889999999999986
No 11
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....
Probab=32.45 E-value=17 Score=28.47 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=15.2
Q ss_pred chhhhHHHHHHHHHHHHHhhhHH
Q 029024 168 GQLLLIVVTPAILWVLYNILQPA 190 (200)
Q Consensus 168 g~~ll~v~~PaigWVlyNIl~Pa 190 (200)
|.+=+.+=-+==+|.||||+.|.
T Consensus 14 ~~i~ll~e~~dDlw~L~~li~~g 36 (132)
T PF03463_consen 14 GLIKLLPEEKDDLWHLYNLIIPG 36 (132)
T ss_dssp HEEEEETTSHHHHHHHHHHEETT
T ss_pred ceEEEcccccCCcEEEEEEEECC
Confidence 33333344444589999999986
No 12
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=26.80 E-value=86 Score=30.24 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhH-HHHHHHHHhhcc--cchhHHH
Q 029024 92 RGLALLLPIIPAIAWVLFNILQ-PALNQINRMRST--KGVIIGL 132 (200)
Q Consensus 92 RlliVl~Pil~A~gWalfNIg~-pAl~Qlq~m~~k--Kgv~ag~ 132 (200)
-++++++||..+-||+. |+ .|.+-.+++.|| ++.+.|+
T Consensus 3 ellfLlLPvaaa~GWym---grrsaqq~~~~qa~~lsr~Yv~Gl 43 (389)
T COG2956 3 ELLFLLLPVAAAYGWYM---GRRSAQQDKQDQANRLSRDYVKGL 43 (389)
T ss_pred hHHHHHHHHHHHHHHHH---hhhHHHhhHHHHHhhccHHHHhHH
Confidence 46789999999999984 55 555555555553 4455543
No 13
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=25.23 E-value=1.6e+02 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHH
Q 029024 94 LALLLPIIPAIAWVLFNILQPALN 117 (200)
Q Consensus 94 liVl~Pil~A~gWalfNIg~pAl~ 117 (200)
.+++.|++..++|++ ++++.-..
T Consensus 8 ~~~~~~~l~~~~~~i-d~~~~~~~ 30 (48)
T PF13400_consen 8 ALVLVPLLLLIGLAI-DVGRAYLA 30 (48)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456678888888887 87765444
No 14
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=21.95 E-value=58 Score=30.31 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHhhhc
Q 029024 170 LLLIVVTPAILWVLYNILQPALNQINRMRS 199 (200)
Q Consensus 170 ~ll~v~~PaigWVlyNIl~PalnQlnrMr~ 199 (200)
...-.+-|++||+++|++-|--+|+++.|+
T Consensus 94 ~~~n~leav~ga~L~r~ll~~~~~~~~L~d 123 (308)
T COG3447 94 TTINILEAVVGAVLLRKLLPWYNPLQNLQD 123 (308)
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 334457899999999999999999999875
Done!