Query 029024
Match_columns 200
No_of_seqs 104 out of 115
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 09:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_M VIIIB, IX, cytochrome C 29.6 38 0.0013 22.7 2.6 18 94-111 20-37 (46)
2 2y69_M Cytochrome C oxidase po 23.0 55 0.0019 23.6 2.6 18 94-111 44-61 (70)
3 1jb0_I Photosystem 1 reaction 14.5 60 0.002 21.1 1.1 13 171-183 10-22 (38)
4 3obw_A Protein pelota homolog; 11.8 52 0.0018 29.0 0.2 27 164-190 27-53 (364)
5 3dan_A Cytochrome P450 74A2; A 10.1 1.9E+02 0.0066 23.5 3.1 22 175-198 281-304 (473)
6 2ksd_A Aerobic respiration con 8.6 1.7E+02 0.0057 22.7 2.0 35 166-200 56-100 (115)
7 4dgk_A Phytoene dehydrogenase; 8.5 61 0.0021 27.2 -0.6 17 125-141 2-18 (501)
8 1rsg_A FMS1 protein; FAD bindi 6.7 70 0.0024 27.5 -1.1 19 122-140 6-24 (516)
9 3h4q_A Putative acetyltransfer 6.4 1.2E+02 0.0039 21.1 0.1 22 20-41 3-24 (188)
10 1bts_A BAND 3 anion transport 6.1 3.1E+02 0.01 16.1 1.9 16 58-73 7-22 (26)
No 1
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=29.59 E-value=38 Score=22.65 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 029024 94 LALLLPIIPAIAWVLFNI 111 (200)
Q Consensus 94 liVl~Pil~A~gWalfNI 111 (200)
.+++.-++.=.||++.|+
T Consensus 20 ~v~f~~~L~PagWVLshL 37 (46)
T 1v54_M 20 SVTFLSFLLPAGWVLYHL 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 445556667779999995
No 2
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=22.96 E-value=55 Score=23.61 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 029024 94 LALLLPIIPAIAWVLFNI 111 (200)
Q Consensus 94 liVl~Pil~A~gWalfNI 111 (200)
.+++.-|+.=.|||+.|+
T Consensus 44 tv~f~~~L~PagWVLshL 61 (70)
T 2y69_M 44 SVTFLSFLLPAGWVLYHL 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 344555666679999995
No 3
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=14.55 E-value=60 Score=21.07 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHH
Q 029024 171 LLIVVTPAILWVL 183 (200)
Q Consensus 171 ll~v~~PaigWVl 183 (200)
+=-+++|.+|||+
T Consensus 10 LPsI~VPlVglvf 22 (38)
T 1jb0_I 10 LPWIFIPVVCWLM 22 (38)
T ss_dssp HHHHHHHHHHTHH
T ss_pred CChhhHhHHHHHH
Confidence 4456889999985
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=11.84 E-value=52 Score=28.97 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhhHH
Q 029024 164 SDSRGQLLLIVVTPAILWVLYNILQPA 190 (200)
Q Consensus 164 ~DnRg~~ll~v~~PaigWVlyNIl~Pa 190 (200)
.+.+|.+-+.+=-+==.|-||||++|+
T Consensus 27 ~~~~g~v~l~pE~~dDlw~lynlI~~G 53 (364)
T 3obw_A 27 DEKRQAVKLHIESEDDLWLLHLILEKD 53 (364)
T ss_dssp CCCCCCEEEECCSHHHHHHHHHHCCTT
T ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC
Confidence 456666666666677789999999874
No 5
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=10.13 E-value=1.9e+02 Score=23.54 Aligned_cols=22 Identities=14% Similarity=-0.138 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhh--HHHHHHHhhh
Q 029024 175 VTPAILWVLYNILQ--PALNQINRMR 198 (200)
Q Consensus 175 ~~PaigWVlyNIl~--PalnQlnrMr 198 (200)
....+.|.+|.+++ |- +.+|+|
T Consensus 281 ta~~l~~~l~~L~~~~P~--~~~~lr 304 (473)
T 3dan_A 281 VKILFPNTLKWIGLAGEN--LHTQLA 304 (473)
T ss_dssp HHHHHHHHHHHHHHHCHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 56889999999998 85 344444
No 6
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=8.61 E-value=1.7e+02 Score=22.73 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=14.4
Q ss_pred ccchhhhHHHHHHHHHHHHHh----------hhHHHHHHHhhhcC
Q 029024 166 SRGQLLLIVVTPAILWVLYNI----------LQPALNQINRMRSE 200 (200)
Q Consensus 166 nRg~~ll~v~~PaigWVlyNI----------l~PalnQlnrMr~~ 200 (200)
-|-+.+..+.+|.+...+-.+ |.-..+++++||++
T Consensus 56 ~rsI~Fgli~aP~viYFls~vVe~LE~SR~~Ls~~V~~Le~~r~~ 100 (115)
T 2ksd_A 56 IRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRER 100 (115)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHCCCSSCCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777788665555555 22356677888764
No 7
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=8.49 E-value=61 Score=27.21 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=12.5
Q ss_pred ccchhHHHhhhHHHHhh
Q 029024 125 TKGVIIGLGLGGLAATG 141 (200)
Q Consensus 125 kKgv~ag~gLgaaa~sg 141 (200)
||-+|+|.|++|+.++.
T Consensus 2 k~VvVIGaG~~GL~aA~ 18 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAI 18 (501)
T ss_dssp CCEEEECCHHHHHHHHH
T ss_pred CCEEEECCcHHHHHHHH
Confidence 46678899988876553
No 8
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=6.65 E-value=70 Score=27.52 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=13.9
Q ss_pred hhcccchhHHHhhhHHHHh
Q 029024 122 MRSTKGVIIGLGLGGLAAT 140 (200)
Q Consensus 122 m~~kKgv~ag~gLgaaa~s 140 (200)
|.+++-+|+|.|++|++++
T Consensus 6 ~~~~~VvIIGaG~aGL~AA 24 (516)
T 1rsg_A 6 PAKKKVIIIGAGIAGLKAA 24 (516)
T ss_dssp CEEEEEEEECCBHHHHHHH
T ss_pred CCCCcEEEECCCHHHHHHH
Confidence 4456778999999887654
No 9
>3h4q_A Putative acetyltransferase; NP_371943.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE P33; 2.50A {Staphylococcus aureus subsp}
Probab=6.39 E-value=1.2e+02 Score=21.12 Aligned_cols=22 Identities=9% Similarity=-0.260 Sum_probs=4.2
Q ss_pred CCCCCCCCCCCCCCCccccccC
Q 029024 20 SPKSSIKPGTTKPTSPLSMQNL 41 (200)
Q Consensus 20 ~~~~~~~~~~~~~~~~~s~~~~ 41 (200)
||+.+.|++++.+++.+.+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~iR~~ 24 (188)
T 3h4q_A 3 SDKIHHHHHHENLYFQGMIRLG 24 (188)
T ss_dssp ----------------CCEEEC
T ss_pred CCCCCCcccccCcceeEEEEec
Confidence 4454444455566677777765
No 10
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=6.12 E-value=3.1e+02 Score=16.07 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHhhcC
Q 029024 58 AAGTAIAGAIFSTLSS 73 (200)
Q Consensus 58 ~a~~alAga~f~~L~~ 73 (200)
.-+++++|-+|+.++.
T Consensus 7 i~s~ai~Gi~f~lf~g 22 (26)
T 1bts_A 7 LISTAVQGILFALLGA 22 (26)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3468999999987764
Done!