Query 029024
Match_columns 200
No_of_seqs 104 out of 115
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 09:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029024.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029024hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vgna1 b.38.4.1 (A:1-135) Dom 29.2 4.9 0.00035 29.4 -0.3 23 168-190 16-38 (135)
2 d2dw4a2 c.3.1.2 (A:274-654,A:7 25.7 4.8 0.00035 27.1 -0.8 17 124-140 5-21 (449)
3 d2qi2a1 b.38.4.1 (A:1-126) Cel 23.8 8.5 0.00062 27.8 0.2 11 180-190 23-33 (126)
4 d1seza1 c.3.1.2 (A:13-329,A:44 22.6 6.1 0.00044 26.4 -0.8 17 124-140 1-17 (373)
5 d2bi7a1 c.4.1.3 (A:2-247,A:317 16.9 9.9 0.00072 29.4 -0.8 18 123-140 1-18 (314)
6 d2bcgg1 c.3.1.3 (G:5-301) Guan 13.8 9.1 0.00066 24.8 -1.6 16 127-142 8-23 (297)
7 d2iida1 c.3.1.2 (A:4-319,A:433 11.2 18 0.0013 25.0 -0.8 16 125-140 31-46 (370)
8 d1c0pa1 c.4.1.2 (A:999-1193,A: 10.7 19 0.0014 24.5 -0.8 17 124-140 6-22 (268)
9 d1b5qa1 c.3.1.2 (A:5-293,A:406 8.2 27 0.002 22.2 -0.7 14 127-140 3-16 (347)
10 d1repc2 a.4.5.10 (C:144-246) R 7.7 80 0.0058 20.8 1.6 12 185-196 64-75 (103)
No 1
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=29.17 E-value=4.9 Score=29.41 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHHHHHHHhhhHH
Q 029024 168 GQLLLIVVTPAILWVLYNILQPA 190 (200)
Q Consensus 168 g~~ll~v~~PaigWVlyNIl~Pa 190 (200)
|.+=+.+=-|==.|.||||++|+
T Consensus 16 g~v~l~pE~~dDLW~LynlI~~G 38 (135)
T d2vgna1 16 AVITLLPEDKEDLFTVYQIVDKD 38 (135)
T ss_dssp EEEEEECCSHHHHHHHHTTCCTT
T ss_pred eEEEEEeCCHHHHHHHHHhccCC
Confidence 33333333333369999999985
No 2
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.67 E-value=4.8 Score=27.13 Aligned_cols=17 Identities=53% Similarity=0.798 Sum_probs=12.8
Q ss_pred cccchhHHHhhhHHHHh
Q 029024 124 STKGVIIGLGLGGLAAT 140 (200)
Q Consensus 124 ~kKgv~ag~gLgaaa~s 140 (200)
++|-+|+|.|++|+.++
T Consensus 5 ~~kViVIGaG~aGL~aA 21 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAA 21 (449)
T ss_dssp CCEEEEECCBHHHHHHH
T ss_pred CCcEEEECCCHHHHHHH
Confidence 34568999999988654
No 3
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}
Probab=23.85 E-value=8.5 Score=27.79 Aligned_cols=11 Identities=55% Similarity=0.948 Sum_probs=9.6
Q ss_pred HHHHHHhhhHH
Q 029024 180 LWVLYNILQPA 190 (200)
Q Consensus 180 gWVlyNIl~Pa 190 (200)
.|-||||++|+
T Consensus 23 LW~L~nli~~G 33 (126)
T d2qi2a1 23 LWYLRNILSEG 33 (126)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHhCCCC
Confidence 49999999985
No 4
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=22.56 E-value=6.1 Score=26.45 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=12.6
Q ss_pred cccchhHHHhhhHHHHh
Q 029024 124 STKGVIIGLGLGGLAAT 140 (200)
Q Consensus 124 ~kKgv~ag~gLgaaa~s 140 (200)
.||-+|+|.|.+|++++
T Consensus 1 ~KkV~IIGaG~aGL~aA 17 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAA 17 (373)
T ss_dssp CCEEEEECCSHHHHHHH
T ss_pred CCEEEEECcCHHHHHHH
Confidence 36777889998887644
No 5
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Probab=16.86 E-value=9.9 Score=29.43 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=14.5
Q ss_pred hcccchhHHHhhhHHHHh
Q 029024 123 RSTKGVIIGLGLGGLAAT 140 (200)
Q Consensus 123 ~~kKgv~ag~gLgaaa~s 140 (200)
++||-+|+|+|++|+.++
T Consensus 1 k~KKI~IIGaG~sGL~aA 18 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIG 18 (314)
T ss_dssp CCCEEEEECCSHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHH
Confidence 367889999999988654
No 6
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.76 E-value=9.1 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=11.2
Q ss_pred chhHHHhhhHHHHhhh
Q 029024 127 GVIIGLGLGGLAATGL 142 (200)
Q Consensus 127 gv~ag~gLgaaa~sgl 142 (200)
-||+|.|++|+.++..
T Consensus 8 viViGaG~~Gl~~A~~ 23 (297)
T d2bcgg1 8 VIVLGTGITECILSGL 23 (297)
T ss_dssp EEEECCSHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHH
Confidence 3688899888765433
No 7
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=11.20 E-value=18 Score=25.03 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=12.5
Q ss_pred ccchhHHHhhhHHHHh
Q 029024 125 TKGVIIGLGLGGLAAT 140 (200)
Q Consensus 125 kKgv~ag~gLgaaa~s 140 (200)
||-+|+|.|++|+.++
T Consensus 31 kkV~IIGaG~aGLsaA 46 (370)
T d2iida1 31 KHVVIVGAGMAGLSAA 46 (370)
T ss_dssp CEEEEECCBHHHHHHH
T ss_pred CeEEEECCCHHHHHHH
Confidence 5677999999988644
No 8
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Probab=10.73 E-value=19 Score=24.54 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=13.0
Q ss_pred cccchhHHHhhhHHHHh
Q 029024 124 STKGVIIGLGLGGLAAT 140 (200)
Q Consensus 124 ~kKgv~ag~gLgaaa~s 140 (200)
+||-+|+|.|++|+.++
T Consensus 6 ~~kVvVIGaGiaGl~~A 22 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSA 22 (268)
T ss_dssp SCEEEEECCSHHHHHHH
T ss_pred CCcEEEECccHHHHHHH
Confidence 45678999999888654
No 9
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=8.19 E-value=27 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=8.8
Q ss_pred chhHHHhhhHHHHh
Q 029024 127 GVIIGLGLGGLAAT 140 (200)
Q Consensus 127 gv~ag~gLgaaa~s 140 (200)
-+|+|.|++|+.++
T Consensus 3 V~IIGaG~aGL~aA 16 (347)
T d1b5qa1 3 VIVVGAGMSGISAA 16 (347)
T ss_dssp EEEECCBHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 35677777766543
No 10
>d1repc2 a.4.5.10 (C:144-246) RepE54 {Escherichia coli, mini-F plasmid [TaxId: 562]}
Probab=7.72 E-value=80 Score=20.75 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=10.1
Q ss_pred HhhhHHHHHHHh
Q 029024 185 NILQPALNQINR 196 (200)
Q Consensus 185 NIl~PalnQlnr 196 (200)
.+|.|++++||.
T Consensus 64 ~VL~pai~EIn~ 75 (103)
T d1repc2 64 RFLQVCVNEINS 75 (103)
T ss_dssp HTHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 378999999986
Done!