BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029025
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 78/141 (55%), Gaps = 19/141 (13%)
Query: 77 ARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGR 130
A R + +VVA GIG +PWN+P D+KFF+ LT P KRNAVVMGR
Sbjct: 19 ALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGR 78
Query: 131 KTWESISPLYRPLPGRLNVVLTHS-------------GSFNIASLENVEICRSIHLALEL 177
KTW+SI P +RPLPGRLNVVL+ + N+ + V + + AL L
Sbjct: 79 KTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRL 138
Query: 178 LAEPPYCSSIEKVFVIGGGQI 198
LA P Y SIE V+ IGGG +
Sbjct: 139 LASPNYTPSIETVYCIGGGSV 159
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 79/141 (56%), Gaps = 19/141 (13%)
Query: 77 ARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGR 130
A R + +VVA GIG +PWN+P D+KFF+ +T P KRNAVVMGR
Sbjct: 19 ALRAFSLVVAVDERGGIGDGRSIPWNVPEDMKFFRDVTTKLRGKNVKPSPAKRNAVVMGR 78
Query: 131 KTWESISPLYRPLPGRLNVVLTHS-------------GSFNIASLENVEICRSIHLALEL 177
KTW+SI P +RPLPGRLNVVL+ + N+ + V + + AL+L
Sbjct: 79 KTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALQL 138
Query: 178 LAEPPYCSSIEKVFVIGGGQI 198
LA P Y SIE V+ IGGG +
Sbjct: 139 LASPNYTPSIETVYCIGGGSV 159
>pdb|3QFX|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
pdb|3QFX|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
Length = 241
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 19/141 (13%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKT 132
RP+ VVVA+ GIG G +PW +P D+++F+++T + P KRNAVVMGRKT
Sbjct: 27 RPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKT 86
Query: 133 WESISPLYRPLPGRLNVVLTHSGSFNI-------------ASLENVEICRSIHLALELLA 179
W+S+ P +RPL RLNVVL+ S + A+ + V + + AL +L
Sbjct: 87 WDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLV 146
Query: 180 EPPYCSSIEKVFVIGGGQILR 200
+ SSIE VF IGGG I +
Sbjct: 147 SKEHTSSIETVFCIGGGTIYK 167
>pdb|3RG9|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
pdb|3RG9|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
Length = 240
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 19/141 (13%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKT 132
RP+ VVVA+ GIG G +PW +P D+++F+++T + P KRNAVVMGRKT
Sbjct: 27 RPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKT 86
Query: 133 WESISPLYRPLPGRLNVVLTHSGSFNI-------------ASLENVEICRSIHLALELLA 179
W+S+ P +RPL RLNVVL+ S + A+ + V + + AL +L
Sbjct: 87 WDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLV 146
Query: 180 EPPYCSSIEKVFVIGGGQILR 200
+ SSIE VF IGGG I +
Sbjct: 147 SKEHTSSIETVFCIGGGTIYK 167
>pdb|1AI9|A Chain A, Candida Albicans Dihydrofolate Reductase
pdb|1AI9|B Chain B, Candida Albicans Dihydrofolate Reductase
pdb|1AOE|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And
1,3-Diamino-7-(1-Ethyepropye)-7h-Pyrralo-[3,2-
F]quinazoline (Gw345)
pdb|1AOE|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And
1,3-Diamino-7-(1-Ethyepropye)-7h-Pyrralo-[3,2-
F]quinazoline (Gw345)
pdb|1IA1|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(Phenylsulfanyl)-2,4-Quinazolinediamine
(Gw997)
pdb|1IA1|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(Phenylsulfanyl)-2,4-Quinazolinediamine
(Gw997)
pdb|1IA2|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-[(4-Methylphenyl)sulfanyl]-2,4-
Quinazolinediamine (Gw578)
pdb|1IA2|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-[(4-Methylphenyl)sulfanyl]-2,4-
Quinazolinediamine (Gw578)
pdb|1IA3|A Chain A, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5- [(4-Tert-Butylphenyl)sulfanyl]-2,4-Quinazolinediamine
(Gw995)
pdb|1IA3|B Chain B, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5- [(4-Tert-Butylphenyl)sulfanyl]-2,4-Quinazolinediamine
(Gw995)
pdb|1IA4|A Chain A, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5-
{[4-(4-Morpholinyl)phenyl]sulfanyl}-2,
4-Quinazolinediamin (Gw2021)
pdb|1IA4|B Chain B, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5-
{[4-(4-Morpholinyl)phenyl]sulfanyl}-2,
4-Quinazolinediamin (Gw2021)
pdb|1M78|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-Chloryl-2,4,6-Quinazolinetriamine (Gw1225)
pdb|1M78|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-Chloryl-2,4,6-Quinazolinetriamine (Gw1225)
pdb|1M79|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(4-Methoxyphenoxy)-2,4-Quinazolinediamine
(Gw1466)
pdb|1M79|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(4-Methoxyphenoxy)-2,4-Quinazolinediamine
(Gw1466)
pdb|1M7A|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 7-[2-Methoxy-1-(Methoxymethyl)ethyl]-7h-
Pyrrolo[3,2-F] Quinazoline-1,3-Diamine (Gw557)
pdb|1M7A|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 7-[2-Methoxy-1-(Methoxymethyl)ethyl]-7h-
Pyrrolo[3,2-F] Quinazoline-1,3-Diamine (Gw557)
pdb|3QLR|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLR|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLS|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLS|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLW|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Ethylpyrimidine-2,
4-Diamine (Ucp120b)
pdb|3QLW|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Ethylpyrimidine-2,
4-Diamine (Ucp120b)
Length = 192
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 7/116 (6%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+V A +GIG GK+PW L ++++FK +T T+ P RNAV+MGRKTWESI +RP
Sbjct: 9 IVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRP 68
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LP RLN++L+ S I +N+ SI +L L S +E+VF+IGG +I
Sbjct: 69 LPDRLNIILSRSYENEIID-DNIIHASSIESSLNL------VSDVERVFIIGGAEI 117
>pdb|3CSE|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3CSE|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3EEJ|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-Phenylphenyl)prop-1-
Ynyl]-6-Methylpyrimidine(Ucp111d) And Nadph
pdb|3EEJ|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-Phenylphenyl)prop-1-
Ynyl]-6-Methylpyrimidine(Ucp111d) And Nadph
pdb|3EEK|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(4-
Methylphenyl)phenyl)
Prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d4m) And Nadph
pdb|3EEK|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(4-
Methylphenyl)phenyl)
Prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d4m) And Nadph
pdb|3EEL|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(3,5-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp11153tm) And
Nadph
pdb|3EEL|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(3,5-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp11153tm) And
Nadph
pdb|3EEM|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(2,6-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d26m) And
Nadph
pdb|3EEM|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(2,6-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d26m) And
Nadph
pdb|3QLX|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLX|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLY|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLY|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLZ|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Propylpyrimidine-2,
4- Diamine (Ucp130b)
pdb|3QLZ|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Propylpyrimidine-2,
4- Diamine (Ucp130b)
Length = 227
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 18/128 (14%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+V A +MGIG G LPW L ++K+F+++T T+D K+N V+MGRKTWESI +RP
Sbjct: 9 IVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRP 68
Query: 143 LPGRLNVVLTHS----------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFV 192
LP R+NVV++ S G ++ SL N LA E + IE++++
Sbjct: 69 LPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANE--------NKIERIYI 120
Query: 193 IGGGQILR 200
IGGG+I R
Sbjct: 121 IGGGEIYR 128
>pdb|3RO9|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-1-
Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3RO9|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-1-
Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3ROA|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Morpholin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1004)
pdb|3ROA|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Morpholin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1004)
Length = 225
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 18/128 (14%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+V A +MGIG G LPW L ++K+F+++T T+D K+N V+MGRKTWESI +RP
Sbjct: 7 IVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRP 66
Query: 143 LPGRLNVVLTHS----------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFV 192
LP R+NVV++ S G ++ SL N LA E + IE++++
Sbjct: 67 LPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANE--------NKIERIYI 118
Query: 193 IGGGQILR 200
IGGG+I R
Sbjct: 119 IGGGEIYR 126
>pdb|2FZJ|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
And Two Highly Potent Trimethoprim Derivatives
pdb|3D80|A Chain A, Structural Analysis Of A Holo Enzyme Complex Of Mouse
Dihydrofolate Reductase With Nadph And A Ternary Complex
Wtih The Potent And Selective Inhibitor
2,4-Diamino-6-(2'-Hydroxydibenz[b,F]azepin-5-Yl)
Methylpteridine
pdb|3D84|X Chain X, Structural Analysis Of A Holo Enzyme Complex Of Mouse
Dihydrofolate Reductase With Nadph And A Ternary Complex
With The Potent And Selective Inhibitor
2.4-Diamino-6-(-2'-Hydroxydibenz[b,F]azepin-5-
Yl)methylpteridine
pdb|3K47|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
Of 2,4- Diaminofuro[2,3-D]pyrimidines As Ternary
Complexes With Nadph And Mouse Dihydrofolate Reductase
Length = 186
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 15/129 (11%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS 137
RP +VA + +MGIGK+G LPW L ++ K+F+++T ++S GK+N V+MGRKTW SI
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 138 PLYRPLPGRLNVVLTHS------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVF 191
RPL R+N+VL+ G+ +A +S+ AL L+ +P S ++ V+
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAHFLA--------KSLDDALRLIEQPELASKVDMVW 113
Query: 192 VIGGGQILR 200
++GG + +
Sbjct: 114 IVGGSSVYQ 122
>pdb|3K45|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
Of 2,4- Diaminofuro[2,3d]pyrimidines As Ternary
Complexes With Nadph And Mouse Dihydrofolate Reductase
Length = 186
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 15/129 (11%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS 137
RP +VA + +MGIGK+G LPW L ++ K+F+++T ++S GK+N V+MGRKTW SI
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 138 PLYRPLPGRLNVVLTHS------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVF 191
RPL R+N+VL+ G+ +A +S+ AL L+ +P S ++ V+
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAHFLA--------KSLDDALRLIEQPDLASKVDMVW 113
Query: 192 VIGGGQILR 200
++GG + +
Sbjct: 114 IVGGSSVYQ 122
>pdb|3GHV|A Chain A, Human Dihydrofolate Reductase Q35kN64F DOUBLE MUTANT
INHIBITOR Complex
pdb|3S3V|A Chain A, Human Dihydrofolate Reductase Q35kN64F DOUBLE MUTANT
BINARY COMPLEX With Trimethoprim
Length = 186
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++FK++T ++S GK+N V+MG+KTW SI +RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1U70|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-Type And Leu22arg Variant
Mouse And Human Dihydrofolate Reductase
Length = 186
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 15/127 (11%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS 137
RP +VA + +MGIGK+G PW L ++ K+F+++T ++S GK+N V+MGRKTW SI
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDRPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 138 PLYRPLPGRLNVVLTHS------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVF 191
RPL R+N+VL+ G+ +A +S+ AL L+ +P S ++ V+
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAHFLA--------KSLDDALRLIEQPELASKVDMVW 113
Query: 192 VIGGGQI 198
++GG +
Sbjct: 114 IVGGSSV 120
>pdb|3L3R|A Chain A, Structural, Computational And Kinetic Data For Antifolate
Interactions Against Pneumocystis Jirovecii,
Pneumocystis Carinii And Human Dihydrofolate Reductase
And Their Active Site Mutants
Length = 186
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++FK++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1DR1|A Chain A, 2.2 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Nadp+ And
Biopterin
pdb|1DR2|A Chain A, 2.3 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Thionadp+ And
Biopterin
pdb|1DR3|A Chain A, 2.3 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Thionadp+ And
Biopterin
pdb|1DR4|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR5|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR6|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR7|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|8DFR|A Chain A, Refined Crystal Structures Of Chicken Liver Dihydrofolate
Reductase. 3 Angstroms Apo-Enzyme And 1.7 Angstroms
Nadph Holo-Enzyme Complex
Length = 189
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA +MGIGKDG LPW L ++ K+F+++T ++ GK+NAV+MG+KTW SI RP
Sbjct: 7 IVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L R+N+VL S A + +S+ AL LL P S ++ V+++GG + +
Sbjct: 67 LKDRINIVL--SRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYK 122
>pdb|3F8Y|A Chain A, Correlations Of Human Dihydrofolate Reductase With
Structural Data For Human Active Site Mutant Enzyme
Complexes
pdb|3GI2|A Chain A, Human Dihydrofolate Reductase Q35k Mutant Inhibitor
Complex
Length = 187
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++FK++T ++S GK+N V+MG+KTW SI RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 68 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 123
>pdb|3OAF|A Chain A, Structural And Kinetic Data For Antifolate Interactions
Against Pneumocystis Jirovecii, Pneumocystis Carinii And
Human Dihydrofolate Reductase And Thier Active Site
Mutants
pdb|3N0H|A Chain A, Hdhfr Double Mutant Q35sN64F TRIMETHOPRIM BINARY COMPLEX
Length = 186
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI +RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|2CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|3CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|4CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|1E26|A Chain A, Design, Synthesis And X-Ray Crystal Structure Of A Potent
Dual Inhibitor Of Thymidylate Synthase And Dihydrofolate
Reductase As An Antitumor Agent.
pdb|1LY3|A Chain A, Analysis Of Quinazoline And Pyridopyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1LY4|A Chain A, Analysis Of Quinazoline And Pyrido[2,3d]pyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1KLK|A Chain A, Crystal Structure Of Pneumocystis Carinii Dihydrofolate
Reductase Ternary Complex With Pt653 And Nadph
pdb|1S3Y|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|2FZH|A Chain A, New Insights Into Dihydrofolate Reductase Interactions:
Analysis Of Pneumocystis Carinii And Mouse Dhfr
Complexes With Nadph And Two Highly Potent Trimethoprim
Derivatives
pdb|2FZI|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
And Two Highly Potent Trimethoprim Derivatives
pdb|1DAJ|A Chain A, Comparison Of Ternary Complexes Of Pneumocystis Carinii
And Wild Type Human Dihydrofolate Reductase With
Coenzyme Nadph And A Novel Classical Antitumor
Furo[2,3d]pyrimidine Antifolate
pdb|1DYR|A Chain A, The Structure Of Pneumocystis Carinii Dihydrofolate
Reductase To 1.9 Angstroms Resolution
pdb|3NZ6|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZ9|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZA|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZB|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Potent
5-(Omega-Carboxyl(Alkyloxy) Pyrido[2,-D]pyrimidine
Derivatives
pdb|3NZC|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyridine
Derivativea
pdb|3TD8|A Chain A, Structural Analysis Of Pneumocystis Carinii Dihydrofolate
Reductase Complex With Nadph And
2,4-Diamino-5-Methyl-6-[2'-(4-Carboxy-1-
Pentynyl)-5'-Methoxybenzyl]pyrido[2,3-D]pyrimidine
Length = 206
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 75 LRARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLT--MSTSDPGKR-NAVVMGRK 131
+ ++ ++VA T GIG+ LPW L ++ +FK++T + T D + N V+MGRK
Sbjct: 1 MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRK 60
Query: 132 TWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSS---IE 188
TWESI +RPL GR+NVV+T + S ++ + + +S+ ALELL S I
Sbjct: 61 TWESIPLQFRPLKGRINVVITRNESLDLGN--GIHSAKSLDHALELLYRTYGSESSVQIN 118
Query: 189 KVFVIGGGQILR 200
++FVIGG Q+ +
Sbjct: 119 RIFVIGGAQLYK 130
>pdb|3F91|A Chain A, Structural Data For Human Active Site Mutant Enzyme
Complexes
Length = 187
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI +RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 68 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 123
>pdb|1VJ3|A Chain A, Structural Studies On Bio-Active Compounds. Crystal
Structure And Molecular Modeling Studies On The
Pneumocystis Carinii Dihydrofolate Reductase Cofactor
Complex With Tab, A Highly Selective Antifolate
Length = 205
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 8/129 (6%)
Query: 78 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLT--MSTSDPGKR-NAVVMGRKTWE 134
++ ++VA T GIG+ LPW L ++ +FK++T + T D + N V+MGRKTWE
Sbjct: 3 QKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWE 62
Query: 135 SISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSS---IEKVF 191
SI +RPL GR+NVV+T + S ++ + + +S+ ALELL S I ++F
Sbjct: 63 SIPLQFRPLKGRINVVITRNESLDLGN--GIHSAKSLDHALELLYRTYGSESSVQINRIF 120
Query: 192 VIGGGQILR 200
VIGG Q+ +
Sbjct: 121 VIGGAQLYK 129
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYR 120
>pdb|1MVS|A Chain A, Analysis Of Two Polymorphic Forms Of A Pyrido[2,3-
D]pyrimidine N9-C10 Reverse-Bridge Antifolate Binary
Complex With Human Dihydrofolate Reductase
pdb|1MVT|A Chain A, Analysis Of Two Polymorphic Forms Of A Pyrido[2,3-
D]pyrimidine N9-C10 Reverse-Bridge Antifolate Binary
Complex With Human Dihydrofolate Reductase
pdb|3FS6|A Chain A, Correlations Of Inhibitor Kinetics For Pneumocystis
Jirovecii And Human Dihydrofolate Reductase With
Structural Data For Human Active Site Mutant Enzyme
Complexes
pdb|3GYF|A Chain A, Human Dhfr With Z-Isomer In Orthorhombic Lattice
pdb|2W3A|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|2W3A|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|2W3B|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And A
Lipophilic Antifolate Selective For Mycobacterium Avium
Dhfr, 6-((2,5-Diethoxyphenyl)aminomethyl)-2,4-Diamino-5-
Methylpyrido(2,3-D)pyrimidine (Sri-8686)
pdb|2W3B|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And A
Lipophilic Antifolate Selective For Mycobacterium Avium
Dhfr, 6-((2,5-Diethoxyphenyl)aminomethyl)-2,4-Diamino-5-
Methylpyrido(2,3-D)pyrimidine (Sri-8686)
pdb|2W3M|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
Folate
pdb|2W3M|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
Folate
Length = 187
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 68 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 123
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYR 120
>pdb|3NXO|A Chain A, Perferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
Length = 186
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPERNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYR 120
>pdb|1DHF|A Chain A, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|1DHF|B Chain B, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|2DHF|A Chain A, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|2DHF|B Chain B, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|1KMS|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And 6-
([5-Quinolylamino]methyl)-2,4-Diamino-5-Methylpyrido[2,
3- D]pyrimidine (Sri-9439), A Lipophilic Antifolate
pdb|1KMV|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
(Z)-
6-(2-[2,5-Dimethoxyphenyl]ethen-1-Yl)-2,4-Diamino-5-
Methylpyrido[2,3-D]pyrimidine (Sri-9662), A Lipophilic
Antifolate
pdb|1PD8|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-n-methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1PD9|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-N-Methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1PDB|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-N-Methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1S3U|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1S3V|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1S3W|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifoaltes In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1U72|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-Type And Leu22arg Variant
Mouse And Human Dihydrfolate Reductase Ternary Crystal
Complexes With Methotrexate And Nadph
pdb|1YHO|A Chain A, Solution Structure Of Human Dihydrofolate Reductase
Complexed With Trimethoprim And Nadph, 25 Structures
pdb|2C2S|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
2,4-
Diamino-5-(1-O-Carboranylmethyl)-6-Methylpyrimidine, A
Novel Boron Containing, Nonclassical Antifolate
pdb|2C2S|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
2,4-
Diamino-5-(1-O-Carboranylmethyl)-6-Methylpyrimidine, A
Novel Boron Containing, Nonclassical Antifolate
pdb|2C2T|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
2,4- Diamino-5-((7,8-Dicarbaundecaboran-7-Yl)methyl)-6-
Methylpyrimidine, A Novel Boron Containing, Nonclassical
Antifolate
pdb|2C2T|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
2,4- Diamino-5-((7,8-Dicarbaundecaboran-7-Yl)methyl)-6-
Methylpyrimidine, A Novel Boron Containing, Nonclassical
Antifolate
pdb|1DRF|A Chain A, Crystal Structure Of Human Dihydrofolate Reductase
Complexed With Folate
pdb|1HFR|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
pdb|1OHJ|A Chain A, Human Dihydrofolate Reductase, Monoclinic (P21) Crystal
Form
pdb|1OHK|A Chain A, Human Dihydrofolate Reductase, Orthorhombic (P21 21 21)
Crystal Form
pdb|3GHW|A Chain A, Human Dihydrofolate Reductase Inhibitor Complex
pdb|3NXR|A Chain A, Perferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXT|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-And
Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2m,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXV|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXX|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro-2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXY|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alernate Binding Modes Observed Fro The E- And
Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NZD|A Chain A, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five
5-(Omega-Carboxy(Alkyloxy(Pyrido[2,3- D]pyrimidine
Derivatives
pdb|3NTZ|A Chain A, Design, Synthesis, Biological Evaluation And X-Ray Crystal
Structures Of Novel Classical
6,5,6-Tricyclicbenzo[4,5]thieno[2,3-D]pyrimidines As
Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors
pdb|3NU0|A Chain A, Design, Synthesis, Biological Evaluation And X-ray Crystal
Structure Of Novel Classical
6,5,6-tricyclicbenzo[4,5]thieno[2,3-d]pyrimidines As
Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors
pdb|3S7A|A Chain A, Human Dihydrofolate Reductase Binary Complex With Pt684
pdb|4DDR|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
P218
Length = 186
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 7 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 64
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R
Sbjct: 65 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYR 118
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYR 120
>pdb|3F8Z|A Chain A, Human Dihydrofolate Reductase Structural Data With Active
Site Mutant Enzyme Complexes
Length = 187
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKSRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 68 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 123
>pdb|3GHC|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of
Classical And Nonclassical
2-Amino-4-Oxo-5-Substituted-6-Thieno[2,3- D]pyrimidines
As Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors And As Potential Antitumor Agenst
Length = 186
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKSRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|3EIG|A Chain A, Crystal Structure Of A Methotrexate-Resistant Mutant Of
Human Dihydrofolate Reductase
Length = 186
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNERRYFERMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1DLR|A Chain A, Methotrexate-Resistant Variants Of Human Dihydrofolate
Reductase With Substitution Of Leucine 22: Kinetics,
Crystallography And Potential As Selectable Markers
Length = 186
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G PW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDFPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1HFQ|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
Length = 186
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNESRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1BOZ|A Chain A, Structure-Based Design And Synthesis Of Lipophilic 2,4-
Diamino-6-Substituted Quinazolines And Their Evaluation
As Inhibitors Of Dihydrofolate Reductase And Potential
Antitumor Agents
pdb|1HFP|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
Length = 186
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEGRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1DLS|A Chain A, Methotrexate-Resistant Variants Of Human Dihydrofolate
Reductase With Substitution Of Leucine 22: Kinetics,
Crystallography And Potential As Selectable Markers
Length = 186
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G PW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDYPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1U71|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-type And Leu22arg Variant
Mouse And Human Dihydrofolate Reductase Ternary Crystal
Complexes With Methotrexate And Nadph
Length = 186
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G PW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDRPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
L GR+N+VL S + RS+ AL+L +P + ++ V+++GG + +
Sbjct: 67 LKGRINLVL--SRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122
>pdb|1ZDR|A Chain A, Dhfr From Bacillus Stearothermophilus
pdb|1ZDR|B Chain B, Dhfr From Bacillus Stearothermophilus
Length = 164
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 18/117 (15%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD +LPW+LP+DL +FK++TM +A+VMGRKT+E+I RPL
Sbjct: 5 IVAMDENRVIGKDNRLPWHLPADLAYFKRVTMG-------HAIVMGRKTFEAIG---RPL 54
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
PGR NVV+T + SF E C +H +LE + + S ++VF+IGG ++ R
Sbjct: 55 PGRDNVVVTGNRSF------RPEGCLVLH-SLEEVKQ-WIASRADEVFIIGGAELFR 103
>pdb|3JW3|A Chain A, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW3|B Chain B, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
Length = 168
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 19/115 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 61
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PGR N+++T + +++ E E+ S+ EL C + E++F+IGG QI
Sbjct: 62 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIIGGAQI 107
>pdb|3JW5|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW5|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JWC|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWC|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWF|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWF|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWK|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWK|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 19/116 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 61
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQIL 199
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI
Sbjct: 62 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIF 108
>pdb|3JVX|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JVX|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JWM|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWM|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 19/115 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 61
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI
Sbjct: 62 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQI 107
>pdb|3E0B|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3E0B|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 166
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 19/115 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 10 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 59
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI
Sbjct: 60 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQI 105
>pdb|2QK8|A Chain A, Crystal Structure Of The Anthrax Drug Target, Bacillus
Anthracis Dihydrofolate Reductase
pdb|3DAT|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Bacillus Anthracis Dihydrofolate Reductase
Length = 162
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 19/115 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 55
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI
Sbjct: 56 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQI 101
>pdb|3FL8|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL9|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|4ELB|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
Length = 166
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 19/115 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 55
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI
Sbjct: 56 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQI 101
>pdb|3S9U|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3S9U|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3SA1|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA1|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA2|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SA2|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SAI|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
pdb|3SAI|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
Length = 165
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 19/115 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 9 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 58
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI
Sbjct: 59 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQI 104
>pdb|2KGK|A Chain A, Solution Structure Of Bacillus Anthracis Dihydrofolate
Reductase
Length = 172
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 19/115 (16%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 55
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI
Sbjct: 56 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQI 101
>pdb|2W3V|A Chain A, Mycobacterium Avium Dihydrofolate Reductase Complexed With
Nadph And Trimethoprim
pdb|2W3W|A Chain A, Mycobacterium Avium Dihydrofolate Reductase Complexed With
Nadph And A Lipophilic Antifolate Selective For M. Avium
Dhfr, 6-((2,5-diethoxyphenyl)aminomethyl)-2,4-diamino-5-
Methylpyrido(2,3-d)pyrimidine (sri-8686)
Length = 167
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IG+ G +PW++P DL FK++TM + V+MGR+TWES+ RPLPGR NVV++
Sbjct: 18 IGRGGDIPWSVPEDLTRFKEVTMG-------HTVIMGRRTWESLPAKVRPLPGRRNVVVS 70
Query: 153 HSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
F E + S+ AL Y S +VIGG QI
Sbjct: 71 RRPDF---VAEGARVAGSLEAALA------YAGSDPAPWVIGGAQI 107
>pdb|1DF7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Methotrexate
pdb|1DG5|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Trimethoprim
pdb|1DG7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And 4-Bromo Wr99210
pdb|1DG8|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph
Length = 159
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 20/106 (18%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IG+ G +PW LP D F+++TM + +VMGR+TW+S+ RPLPGR NVVL+
Sbjct: 14 IGRGGDIPWRLPEDQAHFREITMG-------HTIVMGRRTWDSLPAKVRPLPGRRNVVLS 66
Query: 153 HSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
F +AS E+ S+ E L P + +VIGGGQ+
Sbjct: 67 RQADF-MAS--GAEVVGSLE---EALTSP-------ETWVIGGGQV 99
>pdb|2CIG|A Chain A, Dihydrofolate Reductase From Mycobacterium Tuberculosis
Inhibited By The Acyclic 4r Isomer Of Inh-Nadp A
Derivative Of The Prodrug Isoniazid
Length = 159
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 20/106 (18%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IG+ G +PW LP D F+++TM + +VMGR+ W+S+ RPLPGR NVVL+
Sbjct: 14 IGRGGDIPWRLPEDQAHFREITMG-------HTIVMGRRVWDSLPAKVRPLPGRRNVVLS 66
Query: 153 HSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
F +AS E+ S+ E L P + +VIGGGQ+
Sbjct: 67 RQADF-MAS--GAEVVGSLE---EALTSP-------ETWVIGGGQV 99
>pdb|3Q1H|A Chain A, Crystal Structure Of Dihydrofolate Reductase From Yersinia
Pestis
Length = 163
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 20/118 (16%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PW+LP+DL +FK+ T++ V+MGRKT+ESI RP
Sbjct: 8 LIAALAADRVIGMENAMPWHLPADLAWFKRNTLN-------KPVIMGRKTFESIG---RP 57
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
LPGRLN+V+ S + E V SI AL + + E+V V+GGG++ +
Sbjct: 58 LPGRLNIVI----SSQPGTDERVTWAASIEEAL------AFAGNAEEVMVMGGGRVYK 105
>pdb|4DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|4DFR|B Chain B, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|1TDR|A Chain A, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
pdb|1TDR|B Chain B, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
Length = 159
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|3DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|3DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|1DYH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYH|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1RB2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB2|B Chain B, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RB3|B Chain B, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RD7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RD7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1JOL|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1JOL|B Chain B, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|2ANO|A Chain A, Crystal Structure Of E.Coli Dihydrofolate Reductase In
Complex With Nadph And The Inhibitor Ms-Sh08-17
pdb|2ANQ|A Chain A, Crystal Structure Of E.Coli Dhfr In Complex With Nadph And
The Inhibitor Compound 10a.
pdb|2INQ|A Chain A, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
pdb|1DRE|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1DRH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1JOM|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1RA1|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Reduced Form)
pdb|1RA2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RA3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RA8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2-
Monophosphoadenosine 5'-diphosphoribose
pdb|1RA9|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Oxidized Form)
pdb|1RC4|A Chain A, Dihydrofolate Reductase Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Oxidized Form)
pdb|1RF7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Dihydrofolate
pdb|1RG7|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate
pdb|1RH3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Reduced
Form)
pdb|1RX1|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (reduced
Form)
pdb|1RX2|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With With
Folate And Nicotinamide Adenine Dinucleotide Phosphate
(Oxidized Form)
pdb|1RX3|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Methotrexate And Nicotinamide Adenine Dinucleotide
Phosphate (Reduced Form)
pdb|1RX4|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And 2'-monophosphoadenosine 5'-
Diphosphoribose
pdb|1RX5|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate
pdb|1RX6|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Reduced Form)
pdb|1RX7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With Folate
pdb|1RX8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2'-
Monophosphoadenosine 5'-Diphosphoribose
pdb|1RX9|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|5DFR|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|6DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|7DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|3KFY|A Chain A, Dynamic Switching And Partial Occupancies Of A Small
Molecule Inhibitor Complex Of Dhfr
pdb|3OCH|A Chain A, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3OCH|B Chain B, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3QL3|A Chain A, Re-Refined Coordinates For Pdb Entry 1rx2
pdb|3QYL|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3QYO|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3R33|A Chain A, Evidence For Dynamic Motion In Proteins As A Mechanism For
Ligand Dissociation
Length = 159
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|1DDS|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDS|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDR|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|1DDR|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|3DAU|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Escherichia Coli Dihydrofolate Reductase
pdb|3K74|A Chain A, Disruption Of Protein Dynamics By An Allosteric Effector
Antibody
Length = 159
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T++ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLN-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|2INQ|B Chain B, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
Length = 159
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|2D0K|A Chain A, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
pdb|2D0K|B Chain B, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
Length = 159
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + LPWNLP+DL +FK+ T++ V+ GR TWESI RP
Sbjct: 4 LIAALAVDRVIGNENALPWNLPADLAWFKRNTLN-------KPVIYGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ + P ++FVIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAAAGDVP------EIFVIGGGRV 99
>pdb|3LG4|A Chain A, Staphylococcus Aureus V31y, F92i Mutant Dihydrofolate
Reductase Complexed With Nadph And
5-[(3s)-3-(5-Methoxy-2',6'-Dimethylbiphenyl-
3-Yl)but-1-Yn-1-Yl]-6-Methylpyrimidine-2,4-Diamine
pdb|3LG4|B Chain B, Staphylococcus Aureus V31y, F92i Mutant Dihydrofolate
Reductase Complexed With Nadph And
5-[(3s)-3-(5-Methoxy-2',6'-Dimethylbiphenyl-
3-Yl)but-1-Yn-1-Yl]-6-Methylpyrimidine-2,4-Diamine
Length = 168
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK +K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHYKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+IGG
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIIGG 95
>pdb|1DRA|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRA|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP++L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPAELAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|2W9S|A Chain A, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|B Chain B, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|C Chain C, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|D Chain D, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|E Chain E, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|F Chain F, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9T|A Chain A, Staphylococcus Aureus S1:dhfr
pdb|2W9T|B Chain B, Staphylococcus Aureus S1:dhfr
Length = 161
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 59/113 (52%), Gaps = 22/113 (19%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++VA IG +LPW+LP+DLK KQLT N +VM RKT+ESI +P
Sbjct: 5 IIVAHDKQRVIGYQNQLPWHLPNDLKHIKQLTTG-------NTLVMARKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT+ SF+ E V++ S+ EL VF+ GG
Sbjct: 55 LPNRRNVVLTNQASFH---HEGVDVINSLDEIKELSGH---------VFIFGG 95
>pdb|1DHJ|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHJ|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+ L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPASLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|1DHI|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHI|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+ L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPASLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|3IA4|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|C Chain C, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|D Chain D, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA5|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr)
pdb|3IA5|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr)
Length = 162
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 31/122 (25%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A ++ IG D K+PW+LP++L+ FK+ T+ GK +VMGR T+ESI RP
Sbjct: 5 MIAALANNRVIGLDNKMPWHLPAELQLFKRATL-----GK--PIVMGRNTFESIG---RP 54
Query: 143 LPGRLNVVLTHSGSFN------IASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGG 196
LPGRLN+VL+ + +A+LE+ + +E++ +IGG
Sbjct: 55 LPGRLNIVLSRQTDYQPEGVTVVATLEDAVVA---------------AGDVEELMIIGGA 99
Query: 197 QI 198
I
Sbjct: 100 TI 101
>pdb|2ZZA|A Chain A, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
pdb|2ZZA|B Chain B, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
Length = 162
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 31/122 (25%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A ++ IG D K+PW+LP++L+ FK+ T+ GK +VMGR T+ESI RP
Sbjct: 5 MIAALANNRVIGLDNKMPWHLPAELQLFKRATL-----GK--PIVMGRNTFESIG---RP 54
Query: 143 LPGRLNVVLTHSGSFN------IASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGG 196
LPGRLN+VL+ + +A+LE+ + +E++ +IGG
Sbjct: 55 LPGRLNIVLSRQTDYQPEGVTVVATLEDAVVA---------------AGDVEELMIIGGA 99
Query: 197 QI 198
I
Sbjct: 100 TI 101
>pdb|3F0U|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-5-
Phenylphenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3FQF|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3,4,5-
Trimethoxyphenyl)pent-1-Ynyl]-6-Methylpyrimidine
(Ucp115a)
pdb|3FQO|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(2,5-
Dimethoxyphenyl)prop-1-Ynyl]-6-Ethylpyrimidine (Ucp120b)
pdb|3FQV|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-4-
Phenylphenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3F0V|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(2,
6-Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3F0X|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(3,
5-Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
Length = 157
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|3M09|A Chain A, F98y Tmp-Resistant Dihydrofolate Reductase From
Staphylococcus Aureus With Inhibitor Rab1
Length = 161
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|3FY8|X Chain X, Crystal Structure Of Staph. Aureus Dhfr Complexed With
Nadph And Ar-101
pdb|3FY9|X Chain X, Staph. Aureus Dhfr F98y Complexed With Ar-102
pdb|3FRA|X Chain X, Staphylococcus Aureus F98y Dhfr Complexed With Iclaprim
pdb|3FRB|X Chain X, S. Aureus F98y Dhfr Complexed With Tmp
Length = 158
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|4FGG|A Chain A, S. Aureus Dihydrofolate Reductase Co-crystallized With
Propyl-dap Isobutenyl-dihydrophthalazine Inhibitor
pdb|4FGH|A Chain A, S. Aureus Dihydrofolate Reductase Co-crystallized With
Ethyl-dap Isobutenyl-dihydrophthalazine Inhibitor
Length = 163
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 95
>pdb|3F0B|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-Phenylphenyl)
But-1-Ynyl]-6-Methylpyrimidine
pdb|3FQ0|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-
1-Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3FQC|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3,4,5-Trimethoxyphenyl)
Pent-1-Ynyl]-6-Methylpyrimidine (Ucp115a)
pdb|3FQC|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3,4,5-Trimethoxyphenyl)
Pent-1-Ynyl]-6-Methylpyrimidine (Ucp115a)
pdb|3FQZ|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-4-Phenylphenyl)
But-1-Ynyl]-6-Methylpyrimidine
pdb|3F0Q|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(2,
6-Dimethylphenyl)phenyl)but-1-Ynyl]- 6-Methylpyrimidine
pdb|3F0S|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-5-(3,5-
Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
Length = 157
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|3SQY|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRQ|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRR|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRS|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRU|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRW|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
Length = 167
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 24/118 (20%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
LP R NVVLT SFN+ E V++ SI +L VF+ GG +
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFE 100
>pdb|3SGY|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-[(3s)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3SGY|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-[(3s)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3SH2|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-(3-(4-Methoxybiphenyl-3-Yl)prop-1-
Ynyl)pyrimidine-2,4- Diamine (Ucp120j)
pdb|3SH2|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-(3-(4-Methoxybiphenyl-3-Yl)prop-1-
Ynyl)pyrimidine-2,4- Diamine (Ucp120j)
Length = 167
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 24/118 (20%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
LP R NVVLT SFN+ E V++ SI +L VF+ GG +
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFE 99
>pdb|3FYV|X Chain X, Staph. Aureus Dhfr Complexed With Nadph And Ar-102
pdb|3FYW|X Chain X, Staph. Aureus Dhfr Complexed With Nadph And Ar-101
pdb|3FRD|X Chain X, S. Aureus Dhfr Complexed With Nadph And Folate
pdb|3FRE|X Chain X, S. Aureus Dhfr Complexed With Nadph And Tmp
pdb|3FRF|X Chain X, S. Aureus Dhfr Complexed With Nadph And Iclaprim
Length = 158
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|3SR5|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
Length = 166
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|3M08|A Chain A, Wild Type Dihydrofolate Reductase From Staphylococcus
Aureus With Inhibitor Rab1
Length = 161
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|2W9G|A Chain A, Wild-Type Staphylococcus Aureus Dhfr In Complex With Nadph
And Trimethoprim
pdb|2W9H|A Chain A, Wild-Type Staphylococcus Aureus Dhfr In Complex With
Trimethoprim
Length = 159
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 24/118 (20%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
LP R NVVLT SFN+ E V++ SI +L VF+ GG +
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFE 100
>pdb|1DRB|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRB|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+ L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPACLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|2DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|2DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
Length = 159
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 20/116 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +P+NLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPFNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 99
>pdb|3I8A|X Chain X, Staphylococcus Aureus H30n, F98y Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-(3-(2,5-
Dimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 157
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 24/113 (21%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKNVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGG 195
LP R NVVLT SFN+ E V++ SI +L VF+ GG
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGG 94
>pdb|3TQ8|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Trimethoprim
pdb|3TQ9|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Methotrexate
pdb|3TQA|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Nadph
pdb|3TQB|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Folate
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 19/118 (16%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A + IG++ +LPW+LP+DL FK +T+ GK +VMGR+T++SI +P
Sbjct: 5 LIAAMDKNRLIGRNNELPWHLPADLAHFKSITL-----GK--PIVMGRRTFDSIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
LP R N+V+T + I E +I S+ AL L + P +V +IGG +I +
Sbjct: 55 LPHRRNIVITQQKNLII---EGCDIFYSLDDALSALTKEP------EVIIIGGARIFK 103
>pdb|3QL0|A Chain A, Crystal Structure Of N23ppS148A MUTANT OF E. COLI
DIHYDROFOLATE Reductase
Length = 160
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 21/117 (17%)
Query: 83 VVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYR 141
++ A D IG + +PW LP+DL +FK+ T++ V+MGR TWESI R
Sbjct: 4 LIAALAVDRVIGMENAMPWPPLPADLAWFKRNTLN-------KPVIMGRHTWESIG---R 53
Query: 142 PLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
PLPGR N++L S + + V +S+ A+ C + ++ VIGGG++
Sbjct: 54 PLPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRV 100
>pdb|1LUD|A Chain A, Solution Structure Of Dihydrofolate Reductase Complexed
With Trimethoprim And Nadph, 24 Structures
pdb|2HM9|A Chain A, Solution Structure Of Dihydrofolate Reductase Complexed
With Trimethoprim, 33 Structures
pdb|2HQP|A Chain A, Solution Structure Of L.Casei Dihydrofolate Reductase
Complexed With Nadph, 32 Structures
pdb|1AO8|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate, Nmr,
21 Structures
pdb|1BZF|A Chain A, Nmr Solution Structure And Dynamics Of The Complex Of
Lactobacillus Casei Dihydrofolate Reductase With The New
Lipophilic Antifolate Drug Trimetrexate, 22 Structures
pdb|1DIS|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complex With
Brodimoprim-4,6-Dicarboxylate
pdb|1DIU|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complex With
Brodimoprim-4,6-Dicarboxylate
pdb|2L28|A Chain A, Solution Structure Of Lactobacillus Casei Dihydrofolate
Reductase Apo- Form, 25 Conformers
pdb|2LF1|A Chain A, Solution Structure Of L. Casei Dihydrofolate Reductase
Complexed With Nadph, 30 Structures
Length = 162
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 86 AATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPG 145
A D IGKDG LPW+LP DL +F+ T+ +V+GR+T+ES RPLP
Sbjct: 6 AQDRDGLIGKDGHLPWHLPDDLHYFRAQTVG-------KIMVVGRRTYESFPK--RPLPE 56
Query: 146 RLNVVLTHSGSFN 158
R NVVLTH +
Sbjct: 57 RTNVVLTHQEDYQ 69
>pdb|3DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
Length = 162
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 9/66 (13%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IGKDG LPW+LP DL +F+ T+ GK +V+GR+T+ES RPLP R NVVLT
Sbjct: 13 IGKDGHLPWHLPDDLHYFRAQTV-----GK--IMVVGRRTYESFPK--RPLPERTNVVLT 63
Query: 153 HSGSFN 158
H +
Sbjct: 64 HQEDYQ 69
>pdb|2BLA|A Chain A, Sp21 Double Mutant P. Vivax Dihydrofolate Reductase In
Complex With Pyrimethamine
pdb|2BLC|A Chain A, Sp21 Double Mutant P. Vivax Dihydrofolate Reductase In
Complex With Des-Chloropyrimethamine
Length = 238
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 44/148 (29%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLT--------------------MSTSDPGK-------- 122
G+G G LPW S D+K+F+ +T M S G
Sbjct: 38 GLGNKGTLPWKCNSVDMKYFRSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDN 97
Query: 123 ----------RNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIH 172
+N VVMGR WESI Y+PLP R+NVVL+ + + E+V+ I
Sbjct: 98 THGGDNADKLQNVVVMGRSNWESIPKQYKPLPNRINVVLSKT-----LTKEDVKEKVFII 152
Query: 173 LALELLAEPPYCSSIEKVFVIGGGQILR 200
+++ L K F+IGG Q+ R
Sbjct: 153 DSIDDLLLLLKKLKYYKCFIIGGAQVYR 180
>pdb|2BL9|A Chain A, X-Ray Crystal Structure Of Plasmodium Vivax Dihydrofolate
Reductase In Complex With Pyrimethamine And Its
Derivative
pdb|2BLB|A Chain A, X-Ray Crystal Structure Of Plasmodium Vivax Dihydrofolate
Reductase In Complex With Pyrimethamine And Its
Derivative
Length = 238
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 44/148 (29%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLT--------------------MSTSDPGK-------- 122
G+G G LPW S D+K+F +T M S G
Sbjct: 38 GLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDN 97
Query: 123 ----------RNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIH 172
+N VVMGR +WESI Y+PLP R+NVVL+ + + E+V+ I
Sbjct: 98 THGGDNADKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKT-----LTKEDVKEKVFII 152
Query: 173 LALELLAEPPYCSSIEKVFVIGGGQILR 200
+++ L K F+IGG Q+ R
Sbjct: 153 DSIDDLLLLLKKLKYYKCFIIGGAQVYR 180
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 18/119 (15%)
Query: 83 VVVAATHDMG-IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYR 141
V + A + G IGKD +LPW LP++L+ FK+ T++ +A++MGR T++ + R
Sbjct: 26 VAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTLN-------HAILMGRVTFDGMG--RR 76
Query: 142 PLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200
LP R ++LT + ++ V + L+ Y + + ++++GG QI +
Sbjct: 77 LLPKRETLILTRNPE---EKIDGVATFHDVQSVLDW-----YSAQEKNLYIVGGKQIFQ 127
>pdb|1J3I|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|3DGA|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 280
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 40/141 (28%)
Query: 92 GIGKDGKLPWNLPS-DLKFF--------------------KQLTMSTSD-----PGKR-- 123
G+G G LPW S D+K+F K L T D P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR +WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTSWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILR 200
+ Y K F+IGG + +
Sbjct: 155 KLNY----YKCFIIGGSVVYQ 171
>pdb|1J3J|A Chain A, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|B Chain B, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
Length = 280
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 40/141 (28%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLTMSTSD-------------------------PGKR-- 123
G+G G LPW S D+K+F+ +T ++ P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILR 200
+ Y K F+IGG + +
Sbjct: 155 KLNY----YKCFIIGGSVVYQ 171
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 40/139 (28%)
Query: 92 GIGKDGKLPWNLPS-DLKFF--------------------KQLTMSTSD-----PGKR-- 123
G+G G LPW S D+K+F K L T D P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR TWESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTTWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQI 198
+ Y K F+IGG +
Sbjct: 155 KLNY----YKCFIIGGSVV 169
>pdb|1J3K|A Chain A, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|B Chain B, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
Length = 280
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 40/141 (28%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLTMSTSD-------------------------PGKR-- 123
G+G G LPW S D+K+F+ +T ++ P +
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILR 200
+ Y K F++GG + +
Sbjct: 155 KLNY----YKCFILGGSVVYQ 171
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 50.4 bits (119), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 40/139 (28%)
Query: 92 GIGKDGKLPWNLPS-DLKFF--------------------KQLTMSTSD-----PGKR-- 123
G+G G LPW S D+K+F K L T D P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR +WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTSWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQI 198
+ Y K F+IGG +
Sbjct: 155 KLNY----YKCFIIGGSVV 169
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 40/139 (28%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLTMSTSD-------------------------PGKR-- 123
G+G G LPW S D+K+F+ +T ++ P +
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQI 198
+ Y K F++GG +
Sbjct: 155 KLNY----YKCFILGGSVV 169
>pdb|2JYB|A Chain A, Binary Hvdhfr1:folate Complex
pdb|2ITH|A Chain A, Nmr Structure Of Haloferax Volcanii Dhfr
Length = 162
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
Query: 84 VVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
V A + IG+DG+LPW ++P+D K ++ + DP VV+GR T+ES +
Sbjct: 6 VAALAENRVIGRDGELPWPSIPADKKQYR--SRVADDP-----VVLGRTTFES---MRDD 55
Query: 143 LPGRLNVVLTHSG-SFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPG +V++ S SF S++ S+ A+++ A E +VIGG I
Sbjct: 56 LPGSAQIVMSRSERSF---SVDTAHRAASVEEAVDIAA----SLDAETAYVIGGAAI 105
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 83 VVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLT------MSTSDPGKRNAVVMGRKTWES 135
+ VA + IG ++PW ++ D +F + T + + +P +N V+ GRKT+ES
Sbjct: 13 IFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES 72
Query: 136 ISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLAL-ELLAEPPYCSSIEKVFVIG 194
I PL R+NV+L+ + + + + + A+ +L A P+ K+F++G
Sbjct: 73 IPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRANVPH----NKIFILG 124
Query: 195 G 195
G
Sbjct: 125 G 125
>pdb|1VDR|A Chain A, Dihydrofolate Reductase
pdb|1VDR|B Chain B, Dihydrofolate Reductase
Length = 162
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
Query: 84 VVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
V A + IG+DG+LPW ++P+D K ++ + DP VV+GR T+ES +
Sbjct: 6 VAALAENRVIGRDGELPWPSIPADKKQYR--SRIADDP-----VVLGRTTFES---MRDD 55
Query: 143 LPGRLNVVLTHSG-SFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198
LPG +V++ S SF S++ S+ A+++ A E +VIGG I
Sbjct: 56 LPGSAQIVMSRSERSF---SVDTAHRAASVEEAVDIAA----SLDAETAYVIGGAAI 105
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 83 VVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLT------MSTSDPGKRNAVVMGRKTWES 135
+ VA + IG ++PW ++ D +F + T + + +P +N V+ GRKT+ES
Sbjct: 17 IFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES 76
Query: 136 ISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLAL-ELLAEPPYCSSIEKVFVIG 194
I PL R+NV+L+ + + + + + A+ +L A P+ K+F++G
Sbjct: 77 IPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRANVPH----NKIFILG 128
Query: 195 G 195
G
Sbjct: 129 G 129
>pdb|1CZ3|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
Length = 168
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 101 WNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTH 153
W+ D K F+++T + VVMGR T+E I RPLP RLNVVLT
Sbjct: 22 WSSFEDRKNFRKITTEIGN------VVMGRITFEEIG---RPLPERLNVVLTR 65
>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
Length = 428
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 89 HDMGIGKDGKLP--WNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGR 146
HDM I K +P + LP K +TM KR+A+++ +T E I+ PGR
Sbjct: 37 HDMKITKINAIPLSYRLPEG----KTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHPGR 92
Query: 147 LNVVLT 152
+T
Sbjct: 93 SPGAIT 98
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 76 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMG 129
+AR+ ++ + T ++ KDGK + P K L + T PG R A G
Sbjct: 268 KARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESG 321
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 76 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNA 125
+AR+ ++ + T ++ KDGK + P K L + T PG R A
Sbjct: 287 KARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRA 336
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 76 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNA 125
+AR+ ++ + T ++ KDGK + P K L + T PG R A
Sbjct: 287 KARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRA 336
>pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The
Nucleotidyltransferase (Adenylation) Domain Of Human Dna
Ligase Iv
Length = 139
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 130 RKTWESISPLYRPLPGRLNVV 150
RK +E +S ++ P+PGR+ +V
Sbjct: 116 RKRYEILSSIFTPIPGRIEIV 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,440,665
Number of Sequences: 62578
Number of extensions: 204630
Number of successful extensions: 938
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 98
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)