Query 029025
Match_columns 200
No_of_seqs 113 out of 1196
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rg9_A Bifunctional dihydrofol 100.0 4.7E-33 1.6E-37 239.9 6.8 125 76-200 24-167 (240)
2 3nzb_X Dihydrofolate reductase 100.0 2.9E-32 9.8E-37 229.3 8.2 122 77-200 3-130 (206)
3 3ix9_A Dihydrofolate reductase 100.0 3.1E-31 1.1E-35 221.3 12.2 108 76-200 20-127 (190)
4 3ia4_A Dihydrofolate reductase 100.0 2.5E-31 8.6E-36 216.5 10.0 102 80-200 2-103 (162)
5 3tq8_A Dihydrofolate reductase 100.0 5.5E-31 1.9E-35 218.0 12.0 102 80-200 2-103 (178)
6 3s9u_A Dihydrofolate reductase 100.0 6.6E-31 2.2E-35 214.6 10.8 102 80-200 5-106 (165)
7 1kmv_A DHFR, dihydrofolate red 100.0 1.2E-30 4.2E-35 214.9 11.1 120 78-200 1-122 (186)
8 3dau_A Dihydrofolate reductase 100.0 1.2E-30 4.1E-35 212.2 9.5 100 81-200 2-101 (159)
9 3dfr_A Dihydrofolate reductase 100.0 1.7E-30 5.7E-35 211.1 9.8 103 82-200 2-104 (162)
10 3irm_A Bifunctional dihydrofol 100.0 2E-30 6.8E-35 244.1 8.7 125 76-200 18-161 (521)
11 1vdr_A DHFR, dihydrofolate red 100.0 8.4E-30 2.9E-34 205.0 9.9 105 80-200 2-107 (162)
12 2w3w_A Dihydrofolate reductase 100.0 4.4E-29 1.5E-33 203.1 10.8 106 79-200 4-109 (167)
13 1zdr_A Dihydrofolate reductase 100.0 8.7E-29 3E-33 200.0 12.2 102 81-200 2-103 (164)
14 3nrr_A Dihydrofolate reductase 100.0 5E-29 1.7E-33 234.3 9.4 118 76-200 10-134 (515)
15 2w9h_A DHFR, dihydrofolate red 99.9 2.2E-28 7.5E-33 196.9 8.9 99 80-200 2-100 (159)
16 3cse_A Dihydrofolate reductase 99.9 4.6E-28 1.6E-32 206.6 9.8 122 79-200 4-128 (227)
17 1df7_A DHFR, dihydrofolate red 99.9 4.8E-28 1.6E-32 195.8 9.3 100 81-200 2-101 (159)
18 1aoe_A DHFR, dihydrofolate red 99.9 5.1E-28 1.7E-32 200.3 8.8 116 78-200 3-119 (192)
19 3hj3_A Chain A, crystal struct 99.9 4E-28 1.4E-32 228.4 8.7 117 78-200 4-120 (521)
20 2bl9_A Dihydrofolate reductase 99.9 4.1E-28 1.4E-32 208.9 7.2 116 80-200 26-180 (238)
21 1j3k_A Bifunctional dihydrofol 99.9 8.6E-28 3E-32 211.3 5.1 118 78-200 25-171 (280)
22 3qg2_A Bifunctional dihydrofol 99.9 1.9E-27 6.7E-32 226.6 5.4 118 78-200 25-171 (608)
23 1juv_A DHFR, dihydrofolate red 99.9 6E-27 2E-31 195.0 5.3 105 81-200 2-134 (193)
24 3jtw_A Dihydrofolate reductase 99.9 5.2E-24 1.8E-28 173.6 8.7 111 77-200 2-123 (178)
25 1cz3_A Dihydrofolate reductase 99.9 1.4E-22 4.9E-27 163.0 11.0 106 79-200 1-107 (168)
26 3ky8_A Putative riboflavin bio 99.8 1.2E-20 4.1E-25 156.9 10.0 111 77-198 18-138 (197)
27 2xw7_A Dihydrofolate reductase 99.8 3.3E-20 1.1E-24 149.9 6.3 112 78-200 3-122 (178)
28 2gd9_A Hypothetical protein YY 99.8 3.1E-19 1.1E-23 145.2 6.8 110 76-199 6-131 (189)
29 3kgy_A Bifunctional deaminase- 99.7 1.1E-16 3.8E-21 137.1 8.5 115 76-200 18-175 (231)
30 2b3z_A Riboflavin biosynthesis 99.3 5.4E-12 1.9E-16 113.8 10.0 112 78-199 157-308 (373)
31 2azn_A HTP reductase, putative 99.2 5.8E-11 2E-15 98.6 10.1 111 78-199 3-155 (219)
32 2hxv_A Diaminohydroxyphosphori 99.1 7.1E-10 2.4E-14 99.6 11.6 112 78-199 159-299 (360)
33 2g6v_A Riboflavin biosynthesis 98.9 3.5E-09 1.2E-13 96.5 10.5 112 77-199 172-332 (402)
34 2p4g_A Hypothetical protein; p 98.6 4.6E-07 1.6E-11 77.8 12.0 52 78-135 33-85 (270)
35 2jni_A Arenicin-2; peptide, an 38.9 17 0.00057 20.4 1.7 16 39-54 7-22 (26)
No 1
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=99.97 E-value=4.7e-33 Score=239.86 Aligned_cols=125 Identities=46% Similarity=0.827 Sum_probs=105.7
Q ss_pred CCCccEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhC------CCCCCCccEEEEchhhhhhhcCCCCCCCCCeEE
Q 029025 76 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKTWESISPLYRPLPGRLNV 149 (200)
Q Consensus 76 ~~mrkI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~------~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~I 149 (200)
..||+|++|+|+++||+||++|+|||++++|++||+++|.+ ..+|++.++|||||||||++|.+.+|||+|.+|
T Consensus 24 ~~mr~i~lIvA~s~ng~IG~~g~LPW~lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~~rPLp~R~nI 103 (240)
T 3rg9_A 24 PPLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNV 103 (240)
T ss_dssp CCCCCEEEEEEEETTCEEESSSSCSCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGGGSSCTTSEEE
T ss_pred CCCCeEEEEEEECCCCcEECCCCcCCCCHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhhccCCCCCeEE
Confidence 34999999999999999999999999999999999999998 467788899999999999998655799999999
Q ss_pred EEcCCCCCcc-------------cCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 150 VLTHSGSFNI-------------ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 150 VlSrt~~~~~-------------~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
||||+..... ...+++.+++|++++++.+++.+...++++|||+||++||+
T Consensus 104 VlSr~~~~~~~~~~~~~~~~~~~~~~~~v~v~~sl~eal~~l~~~~~~~~~~~I~VIGGa~IY~ 167 (240)
T 3rg9_A 104 VLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYK 167 (240)
T ss_dssp EECSSCCHHHHHTTCSSHHHHHHHGGGEEEESSCHHHHHHHTTSHHHHHHEEEEEECCCHHHHH
T ss_pred EEccCcccccccccccccccccccCCCCEEEECCHHHHHHHHhccccccCCCeEEEECCHHHHH
Confidence 9999875420 00346899999999999998741001157999999999984
No 2
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=99.97 E-value=2.9e-32 Score=229.30 Aligned_cols=122 Identities=39% Similarity=0.693 Sum_probs=103.8
Q ss_pred CCccEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCC---CCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcC
Q 029025 77 ARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMST---SDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTH 153 (200)
Q Consensus 77 ~mrkI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~---~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSr 153 (200)
+|++|++|+|+|+||+||++|+|||++++|++||++.|.++ .+|++.++|||||||||+++...+||++|++||+||
T Consensus 3 ~~~~i~livA~s~dg~IG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~~~Pl~~r~niVlSr 82 (206)
T 3nzb_X 3 QQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITR 82 (206)
T ss_dssp CCSCEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGGGCSCTTSEEEEECS
T ss_pred CCCEEEEEEEECCCCcEeCCCCcCCCChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhcccCCCCCeEEEEcc
Confidence 48899999999999999999999999999999999999863 355667999999999999986458999999999999
Q ss_pred CCCCcccCCCCeEEeCCHHHHHHHhcCCCCCC---CCCcEEEEeCccccC
Q 029025 154 SGSFNIASLENVEICRSIHLALELLAEPPYCS---SIEKVFVIGGGQILR 200 (200)
Q Consensus 154 t~~~~~~~~~~v~V~~sl~eaI~~Lk~~~~~~---~~kdI~ViGGa~IY~ 200 (200)
++... ..+++.+++|++++++.+++++... ++++|||+||+++|+
T Consensus 83 ~~~~~--~~~~~~v~~sl~eal~~l~~~~~~~~~~~~~~i~ViGG~~iy~ 130 (206)
T 3nzb_X 83 NESLD--LGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYK 130 (206)
T ss_dssp SCCCC--CCSSCEEESSHHHHHHHHHHHSCSSSSSEEEEEEECCCHHHHH
T ss_pred CCCCC--CCCCEEEECCHHHHHHHHhccccccccCCCCcEEEECcHHHHH
Confidence 97543 2356889999999999998741101 257999999999984
No 3
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=99.97 E-value=3.1e-31 Score=221.25 Aligned_cols=108 Identities=29% Similarity=0.590 Sum_probs=96.9
Q ss_pred CCCccEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCC
Q 029025 76 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSG 155 (200)
Q Consensus 76 ~~mrkI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~ 155 (200)
.+||+|++++|+|+||+||++|+|||++++|++||+++|.+ +++||||||||+++. +||++|++||+||++
T Consensus 20 ~M~r~i~~i~A~s~dG~IG~~g~lpW~~~~D~~~fk~~t~~-------~~vIMGRkTyesi~~--~plp~r~~iVlSr~~ 90 (190)
T 3ix9_A 20 GMTKKIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTLN-------HAILMGRVTFDGMGR--RLLPKRETLILTRNP 90 (190)
T ss_dssp --CCCEEEEEEECTTCEEEBTTBCSCCCHHHHHHHHHHHTT-------SEEEEEHHHHHHTTT--CCCTTCEEEEECCSC
T ss_pred CcceeEEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHhcC-------CeEEEcCcchhhcCc--cCCCCCEEEEEcCCC
Confidence 34889999999999999999999999999999999999985 999999999999974 799999999999997
Q ss_pred CCcccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 156 SFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 156 ~~~~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
... .+++.+++|++++++.++++ +++|||+||+++|+
T Consensus 91 ~~~---~~~~~v~~~~~eal~~lk~~-----~~~i~ViGG~~ly~ 127 (190)
T 3ix9_A 91 EEK---IDGVATFHDVQSVLDWYSAQ-----EKNLYIVGGKQIFQ 127 (190)
T ss_dssp CSC---CSSSEEESSHHHHHHHHHTS-----CSCEEEEECHHHHH
T ss_pred CCC---CCCEEEECCHHHHHHHHHhC-----CCCEEEECCHHHHH
Confidence 643 35687889999999999874 68999999999984
No 4
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=99.97 E-value=2.5e-31 Score=216.49 Aligned_cols=102 Identities=38% Similarity=0.759 Sum_probs=93.4
Q ss_pred cEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCcc
Q 029025 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (200)
Q Consensus 80 kI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~ 159 (200)
++++|+|+|+||+||++|+|||++|+|++||+++|.+ ++|||||||||+++ +|||+|++||+||++...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~~~~D~~~Fk~~t~g-------~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~~- 70 (162)
T 3ia4_A 2 IVSMIAALANNRVIGLDNKMPWHLPAELQLFKRATLG-------KPIVMGRNTFESIG---RPLPGRLNIVLSRQTDYQ- 70 (162)
T ss_dssp EEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHTT-------SCEEEEHHHHHHHC---SCCTTSCEEEECCCTTCC-
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHHhcC-------cEEEEEchHHhhhh---hhcCCCeEEEEcCCCCCC-
Confidence 6999999999999999999999999999999999986 99999999999997 699999999999997643
Q ss_pred cCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 160 ~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.+++.+++|++++++.+++ +++|||+||+++|+
T Consensus 71 --~~~~~v~~s~~~al~~l~~------~~~i~viGG~~iy~ 103 (162)
T 3ia4_A 71 --PEGVTVVATLEDAVVAAGD------VEELMIIGGATIYN 103 (162)
T ss_dssp --CTTSEEESSHHHHHHHHTT------CSEEEECCCHHHHH
T ss_pred --CCCeEEECCHHHHHHHhhC------CCCEEEECCHHHHH
Confidence 4678899999999999975 46999999999984
No 5
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=99.97 E-value=5.5e-31 Score=218.01 Aligned_cols=102 Identities=37% Similarity=0.723 Sum_probs=93.4
Q ss_pred cEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCcc
Q 029025 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (200)
Q Consensus 80 kI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~ 159 (200)
++++|+|+|+||+||++|+|||++|+|+++|+++|.+ ++|||||||||+++ +|||+|++||+||++...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~lp~Dl~~Fk~~T~g-------~~vIMGRkTyesi~---~plp~R~niVlSr~~~~~- 70 (178)
T 3tq8_A 2 IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITLG-------KPIVMGRRTFDSIG---KPLPHRRNIVITQQKNLI- 70 (178)
T ss_dssp EEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHTT-------SEEEEEHHHHHHHC---SCCTTSEEEEECSCTTCC-
T ss_pred EEEEEEEECCCCcEECCCCcCCcCHHHHHHHHHhhcC-------CEEEEechHHhhhh---hccCCCeEEEEcCCCCcC-
Confidence 6999999999999999999999999999999999986 99999999999997 699999999999997643
Q ss_pred cCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 160 ~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.+++.+++|++++++.+++ +++|||+||+++|+
T Consensus 71 --~~~v~v~~sl~eal~~l~~------~~~i~viGG~~iy~ 103 (178)
T 3tq8_A 71 --IEGCDIFYSLDDALSALTK------EPEVIIIGGARIFK 103 (178)
T ss_dssp --CTTSEEESSHHHHHHHTTT------CSEEEEEECHHHHH
T ss_pred --CCCeEEECCHHHHHHHhhC------CCCEEEECCHHHHH
Confidence 4678888999999999875 46999999999984
No 6
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=99.97 E-value=6.6e-31 Score=214.59 Aligned_cols=102 Identities=40% Similarity=0.796 Sum_probs=93.4
Q ss_pred cEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCcc
Q 029025 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (200)
Q Consensus 80 kI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~ 159 (200)
++++|+|+|+||+||++|+|||++|+|++||+++|.+ ++|||||||||+++ +|||+|++||+||++...
T Consensus 5 ~i~li~A~s~dg~Ig~~g~lpW~~~~D~~~F~~~t~~-------~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~~- 73 (165)
T 3s9u_A 5 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGYH- 73 (165)
T ss_dssp EEEEEEEEETTCEEEBTTBCSCCCHHHHHHHHHHHTT-------SCEEEEHHHHHHHC---SCCTTSCEEEECSCTTCC-
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHhhcC-------CEEEEcchHHhhhh---hccCCCeEEEECCCCccC-
Confidence 6999999999999999999999999999999999986 99999999999997 699999999999997643
Q ss_pred cCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 160 ~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.+++.+++|++++++.++++ ++|||+||+++|+
T Consensus 74 --~~~v~v~~~~~~al~~l~~~------~~i~viGG~~iy~ 106 (165)
T 3s9u_A 74 --VEGCEVAHSVEEVFELCKNE------EEIFIFGGAQIYD 106 (165)
T ss_dssp --CTTCEEESSHHHHHHHTTTC------SEEEECCCHHHHH
T ss_pred --CCCEEEECCHHHHHHHhhcC------CCEEEECCHHHHH
Confidence 46788889999999999862 6999999999984
No 7
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=99.97 E-value=1.2e-30 Score=214.88 Aligned_cols=120 Identities=36% Similarity=0.709 Sum_probs=104.4
Q ss_pred CccEEEEEEEeCCCeeecCCCCCC-cChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCC
Q 029025 78 RRPYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGS 156 (200)
Q Consensus 78 mrkI~livAvSlDG~IG~~G~LpW-~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~ 156 (200)
.|++++++|+|+||+||++|++|| ++++|+++|++.|.+..+|++.|++||||||||+++...|||++|++||+||++.
T Consensus 1 ~r~i~~i~A~s~dG~Ig~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~~~~pl~~r~~iVlSr~~~ 80 (186)
T 1kmv_A 1 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK 80 (186)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCS
T ss_pred CceEEEEEEECCCCCEeCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCcccCCCCCCeEEEECCCCc
Confidence 378999999999999999999999 9999999999999986677778899999999999985458999999999999975
Q ss_pred CcccCCCCe-EEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 157 FNIASLENV-EICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 157 ~~~~~~~~v-~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.. .+++ .+++|++++++.|++++...++++|||+||+++|+
T Consensus 81 ~~---~~~~~~v~~~~~~al~~lk~~~~~~~~~~i~ViGG~~l~~ 122 (186)
T 1kmv_A 81 EP---PQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122 (186)
T ss_dssp SC---CTTCSEEESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHH
T ss_pred cC---CCCCEEEECCHHHHHHHHhhcccccCCCeEEEEcCHHHHH
Confidence 32 3566 88999999999998753223578999999999884
No 8
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=99.97 E-value=1.2e-30 Score=212.19 Aligned_cols=100 Identities=39% Similarity=0.764 Sum_probs=91.3
Q ss_pred EEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCccc
Q 029025 81 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 160 (200)
Q Consensus 81 I~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~~ 160 (200)
|++|+|+|+||+||++|+|||++|+|++||+++|.+ +++||||||||+++ +|||+|++||+||++ ..
T Consensus 2 i~li~A~s~~g~IG~~g~lpW~l~~D~~~Fk~~t~~-------~~vIMGRkT~esi~---~plp~r~~iVlSr~~-~~-- 68 (159)
T 3dau_A 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLN-------KPVIMGRHTWESIG---RPLPGRKNIILSSQP-GT-- 68 (159)
T ss_dssp EEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHTT-------SCEEEEHHHHHHHC---SCCTTSCEEEECSSC-CS--
T ss_pred EEEEEEECCCCeEECCCCcCcCChhHHHHHHHHhcC-------CeEEEechHHhhcc---cccCCCEEEEECCCC-CC--
Confidence 789999999999999999999999999999999986 89999999999997 699999999999997 42
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 161 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 161 ~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.+++.+++|++++++.++. +++|||+||+++|+
T Consensus 69 -~~~~~v~~s~~~al~~~~~------~~~i~iiGG~~iy~ 101 (159)
T 3dau_A 69 -DDRVTWVKSVDEAIAACGD------VPEIMVIGGGRVYE 101 (159)
T ss_dssp -CTTSEEESSHHHHHHTTCS------CSCEEECCCHHHHH
T ss_pred -CCCeEEECCHHHHHHHhcC------CCCEEEECCHHHHH
Confidence 4678889999999998753 67999999999984
No 9
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=99.96 E-value=1.7e-30 Score=211.13 Aligned_cols=103 Identities=35% Similarity=0.668 Sum_probs=93.5
Q ss_pred EEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCcccC
Q 029025 82 QVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIAS 161 (200)
Q Consensus 82 ~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~~~ 161 (200)
.+|+|+|+||+||++|+|||++++|++||+++|.+ +++||||||||+++. +|||+|++||+||++...
T Consensus 2 ~li~A~s~dg~IG~~g~lpW~~~~D~~~F~~~t~~-------~~viMGRkTyes~~~--~plp~r~~iVlS~~~~~~--- 69 (162)
T 3dfr_A 2 AFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTVG-------KIMVVGRRTYESFPK--RPLPERTNVVLTHQEDYQ--- 69 (162)
T ss_dssp EEEEEECTTCEEEBTTBCSSCCHHHHHHHHHTTTT-------SEEEEEHHHHHHSSS--SSCTTSEEEEECSCTTCC---
T ss_pred EEEEEECCCCeEeCCCCCCCCcHHHHHHHHHHhcC-------CeEEEecchhhhccc--ccCCCCcEEEEcCCCCCC---
Confidence 58999999999999999999999999999999985 999999999999973 699999999999997643
Q ss_pred CCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 162 LENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 162 ~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
++++.+++|++++++.++++ ++++|||+||+++|+
T Consensus 70 ~~~~~~~~~~~~~l~~lk~~----~~~~i~viGG~~l~~ 104 (162)
T 3dfr_A 70 AQGAVVVHDVAAVFAYAKQH----LDQELVIAGGAQIFT 104 (162)
T ss_dssp CTTSEEESSHHHHHHHHHHC----CSSCEEECCCHHHHH
T ss_pred CCCEEEECCHHHHHHHHhcC----CCCCEEEECCHHHHH
Confidence 56787779999999999985 578999999999984
No 10
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=99.96 E-value=2e-30 Score=244.06 Aligned_cols=125 Identities=49% Similarity=0.859 Sum_probs=108.7
Q ss_pred CCCccEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhC------CCCCCCccEEEEchhhhhhhcCCCCCCCCCeEE
Q 029025 76 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKTWESISPLYRPLPGRLNV 149 (200)
Q Consensus 76 ~~mrkI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~------~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~I 149 (200)
..|++|++|+|++.||+||++|+|||++|+|++||+++|++ ..+|++.++|||||||||++|.+.+|||+|.+|
T Consensus 18 ~~~~~islIvA~~~ng~IG~~g~LPW~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~k~rPLP~R~NI 97 (521)
T 3irm_A 18 LALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGRLNV 97 (521)
T ss_dssp CSSCCEEEEEEEETTSEEESSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGGGCSCTTEEEE
T ss_pred cCCceEEEEEEECCCCceecCCCcCCCChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCcccccCCCCCCeEE
Confidence 34999999999999999999999999999999999999998 678899999999999999998756899999999
Q ss_pred EEcCCCCCc-------------ccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 150 VLTHSGSFN-------------IASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 150 VlSrt~~~~-------------~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
||||+.... ....+++++++|+++|++.+++.+++.+.++|||+||++||+
T Consensus 98 VLSR~~~~~~~~~~~p~~~~~~~~~~~~v~V~~SleeAL~~l~~~~~~~~~~~VfVIGGa~IY~ 161 (521)
T 3irm_A 98 VLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYA 161 (521)
T ss_dssp EECSSCCHHHHHHTSSSHHHHHHHGGGEEEESSCHHHHHHHHTSTTTTTTEEEEEECCCHHHHH
T ss_pred EEecccccccccccccccccccccCCCCeEEECCHHHHHHHHhccccccCCCeEEEEcCHHHHH
Confidence 999987542 001356899999999999998864333568999999999984
No 11
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=99.96 E-value=8.4e-30 Score=205.03 Aligned_cols=105 Identities=32% Similarity=0.581 Sum_probs=93.8
Q ss_pred cEEEEEEEeCCCeeecCCCCCC-cChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCc
Q 029025 80 PYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFN 158 (200)
Q Consensus 80 kI~livAvSlDG~IG~~G~LpW-~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~ 158 (200)
++++++|+|+||+||++|++|| ++++|++||+++|.+ +++||||||||+++ ||+++|++||+||++...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~l~W~~~~~d~~~f~~~t~~-------~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~~ 71 (162)
T 1vdr_A 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIAD-------DPVVLGRTTFESMR---DDLPGSAQIVMSRSERSF 71 (162)
T ss_dssp CEEEEEEEEETSEEEBTTBCSSCCCHHHHHHHHHHTSS-------SCEEEEHHHHHHTT---TSCCSSSEEEECSSCCCC
T ss_pred EEEEEEEEcCCCcEECCCCccccCChHHHHHHHHhhCC-------CEEEEcchHHhhCC---ccCCcCeEEEEcCCCccc
Confidence 7999999999999999999999 999999999998874 99999999999997 799999999999987511
Q ss_pred ccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 159 IASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 159 ~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.++++.+++|++++++.++++ ++++|||+||+++|+
T Consensus 72 --~~~~~~~~~~~~~~l~~l~~~----~~~~i~viGG~~l~~ 107 (162)
T 1vdr_A 72 --SVDTAHRAASVEEAVDIAASL----DAETAYVIGGAAIYA 107 (162)
T ss_dssp --CSSSCCEESSHHHHHHHHHHT----TCSCEEEEECHHHHH
T ss_pred --CCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHH
Confidence 256777778999999999875 578999999999874
No 12
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=99.96 E-value=4.4e-29 Score=203.07 Aligned_cols=106 Identities=42% Similarity=0.698 Sum_probs=93.0
Q ss_pred ccEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCc
Q 029025 79 RPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFN 158 (200)
Q Consensus 79 rkI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~ 158 (200)
+++++++|+|+||+||++|++||++++|+++|++.|.+ +++||||||||+++...||+++|++||+||++..
T Consensus 4 ~~i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~~-------~~viMGRkTyes~~~~~~pl~~r~~iV~S~~~~~- 75 (167)
T 2w3w_A 4 AEVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTMG-------HTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDF- 75 (167)
T ss_dssp CCCEEEEEEETTSEEEBTTBCSCCCHHHHHHHHHHHTT-------SEEEEEHHHHHHSCGGGSSCTTSEEEEECSCTTC-
T ss_pred eEEEEEEEECCCCcCcCCCCcCccchHHHHHHHHHhcC-------CeEEEcchHhhhcCccccCCCCCeEEEEeCCCCC-
Confidence 35999999999999999999999999999999999975 9999999999999754489999999999999653
Q ss_pred ccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 159 IASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 159 ~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.++++.+++|+++++ .+++ ++++|||+||+++|+
T Consensus 76 --~~~~~~~~~~~~~~l-~l~~-----~~~~i~ViGG~~l~~ 109 (167)
T 2w3w_A 76 --VAEGARVAGSLEAAL-AYAG-----SDPAPWVIGGAQIYL 109 (167)
T ss_dssp --CCTTSEEESSHHHHH-HHTT-----TCSSCEEEECHHHHH
T ss_pred --CCCCEEEECCHHHHH-Hhhc-----CCCeEEEEchHHHHH
Confidence 256788888999999 5553 478999999999884
No 13
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=99.96 E-value=8.7e-29 Score=199.96 Aligned_cols=102 Identities=46% Similarity=0.815 Sum_probs=92.0
Q ss_pred EEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCccc
Q 029025 81 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 160 (200)
Q Consensus 81 I~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~~ 160 (200)
+++++|+|+||+||++|++||++++|++||+++|.+ +++||||||||+++ ||+++|++||+||++...
T Consensus 2 i~~~~A~s~dG~Ig~~g~l~W~~~~d~~~f~~~t~~-------~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~~-- 69 (164)
T 1zdr_A 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTMG-------HAIVMGRKTFEAIG---RPLPGRDNVVVTGNRSFR-- 69 (164)
T ss_dssp EEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHTT-------SEEEEEHHHHHHHC---SCCTTSEEEEECSCTTCC--
T ss_pred EEEEEEEcCCCeEeCCCCcccCCHHHHHHHHHHhcC-------CEEEECCcHHhcCC---CCCCCCeEEEEcCCCCcC--
Confidence 789999999999999999999999999999998874 99999999999997 799999999999997542
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 161 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 161 ~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
++++.+++|++++++.++++ +++|||+||+++|+
T Consensus 70 -~~~~~~~~~~~~~l~~l~~~-----~~~i~viGG~~l~~ 103 (164)
T 1zdr_A 70 -PEGCLVLHSLEEVKQWIASR-----ADEVFIIGGAELFR 103 (164)
T ss_dssp -CTTCEEECSHHHHHHHHHTC-----CSCEEEEECHHHHH
T ss_pred -CCCeEEECCHHHHHHHHhcC-----CCeEEEECcHHHHH
Confidence 46787788999999999873 68999999999874
No 14
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=99.95 E-value=5e-29 Score=234.29 Aligned_cols=118 Identities=26% Similarity=0.505 Sum_probs=104.9
Q ss_pred CCCccEEEEEEEeCCCeeecCCCCCCc-ChhhHHHHHHHhhC------CCCCCCccEEEEchhhhhhhcCCCCCCCCCeE
Q 029025 76 RARRPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMS------TSDPGKRNAVVMGRKTWESISPLYRPLPGRLN 148 (200)
Q Consensus 76 ~~mrkI~livAvSlDG~IG~~G~LpW~-l~eD~~fF~~~T~~------~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~ 148 (200)
.+||++++++|+|+||+||++|+|||+ +++|++||+++|.+ ..+|++.++|||||||||+++...+||++|++
T Consensus 10 ~~MrkI~livA~SldG~IG~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~~~rPLp~R~n 89 (515)
T 3nrr_A 10 EGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLKNRIN 89 (515)
T ss_dssp TTCCCEEEEEEECTTSEEEBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGGGCSCTTEEE
T ss_pred CCCceEEEEEEECCCCcCCCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhhccCCCCCCeE
Confidence 349999999999999999999999999 99999999999987 44677889999999999999864579999999
Q ss_pred EEEcCCCCCcccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 149 VVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 149 IVlSrt~~~~~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
|||||++.. .+++.+++|++++++++++++ ++++|||+||++||+
T Consensus 90 IVlSrt~~~----~~~v~V~~sl~eal~~Lk~~~---~~~~I~VIGGg~Iy~ 134 (515)
T 3nrr_A 90 VILSRTVKE----VPGCLVYEDLSTAIRDLRANV---PHNKIFILGGSFLYK 134 (515)
T ss_dssp EEECSSCCC----CTTEEEESSHHHHHHHHHHHS---CCSCEEECCCHHHHH
T ss_pred EEECCCCCC----CCCEEEECCHHHHHHHHhhcc---CCCCEEEECCHHHHH
Confidence 999999752 357899999999999998741 478999999999984
No 15
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=99.95 E-value=2.2e-28 Score=196.92 Aligned_cols=99 Identities=44% Similarity=0.757 Sum_probs=88.0
Q ss_pred cEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCcc
Q 029025 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (200)
Q Consensus 80 kI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~ 159 (200)
++++++|+|+||+||++|++||++++|+++|++.|.+ +++||||||||+++ +|+|+|++||+||++...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~~-------~~viMGRkTyes~~---~pl~~r~~iV~S~~~~~~- 70 (159)
T 2w9h_A 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KPLPNRRNVVLTSDTSFN- 70 (159)
T ss_dssp CEEEEEEECTTCEEEBTTBCSSCCHHHHHHHHHHHTT-------SEEEEEHHHHHHHC---SCCTTSEEEEECSCTTCC-
T ss_pred EEEEEEEECCCCeEcCCCccCccchHHHHHHHHHhcC-------CEEEECCChhhccc---ccCCCCEEEEEcCCCCcC-
Confidence 6999999999999999999999999999999999975 99999999999997 799999999999997542
Q ss_pred cCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 160 ~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.+++.++++++++++. +++|||+||+++|+
T Consensus 71 --~~~~~~~~~~~~~l~~---------~~~i~viGG~~l~~ 100 (159)
T 2w9h_A 71 --VEGVDVIHSIEDIYQL---------PGHVFIFGGQTLFE 100 (159)
T ss_dssp --CTTCEEECSGGGGGGS---------CSCEEEEECHHHHH
T ss_pred --CCCeEEECCHHHHHhc---------CCcEEEEChHHHHH
Confidence 3567788899988765 35899999999874
No 16
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=99.95 E-value=4.6e-28 Score=206.61 Aligned_cols=122 Identities=39% Similarity=0.644 Sum_probs=101.3
Q ss_pred ccEEEEEEEeCCCee-ecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCC
Q 029025 79 RPYQVVVAATHDMGI-GKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 157 (200)
Q Consensus 79 rkI~livAvSlDG~I-G~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~ 157 (200)
+++++++|+|+||+| |++|+|||++++|++||+++|.+..+|++.++|||||||||+++...+||++|++||+||++..
T Consensus 4 ~~i~livA~Sldg~iiG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~wrPlp~r~~iVlSr~~~~ 83 (227)
T 3cse_A 4 VPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDG 83 (227)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTSSS
T ss_pred cEEEEEEEEcCCCCEECCCCCcCCCChHHHHHHHHHHccCCcccccCEEEECchhhhcccccccCCCcCeEEEEeCCCcc
Confidence 579999999988776 9999999999999999999998877778889999999999999754359999999999998653
Q ss_pred ccc-CCCCeEEeCCHHHHHHHhcCCC-CCCCCCcEEEEeCccccC
Q 029025 158 NIA-SLENVEICRSIHLALELLAEPP-YCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 158 ~~~-~~~~v~V~~sl~eaI~~Lk~~~-~~~~~kdI~ViGGa~IY~ 200 (200)
... .++++.+++|++++++.|++.+ ...++++|||+||+++|+
T Consensus 84 ~~~~~~~~~~v~~sl~~al~~lk~~~~~~~~~~~I~ViGG~~ly~ 128 (227)
T 3cse_A 84 ELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYR 128 (227)
T ss_dssp SCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECCCHHHHH
T ss_pred ccccCCCCEEEeCCHHHHHHHHHhhhcccCCCCeEEEEcCHHHHH
Confidence 210 1355889999999999998730 001468999999999984
No 17
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=99.95 E-value=4.8e-28 Score=195.75 Aligned_cols=100 Identities=40% Similarity=0.772 Sum_probs=88.6
Q ss_pred EEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCccc
Q 029025 81 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 160 (200)
Q Consensus 81 I~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~~ 160 (200)
+++++|+|+||+||++|++||++++|+++|++.|.+ +++||||||||+++...+|+++|++||+||++..
T Consensus 2 i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~~-------~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~--- 71 (159)
T 1df7_A 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMG-------HTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADF--- 71 (159)
T ss_dssp EEEEEEEETTSEEEBTTBCSSCCHHHHHHHHHHHTT-------SEEEEEHHHHHHSCGGGSSCTTSEEEEECSSTTC---
T ss_pred EEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHHCC-------CEEEEeChHHhhcccccCCCCcCEEEEEeCCCCc---
Confidence 789999999999999999999999999999999885 8999999999999754579999999999998653
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 161 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 161 ~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.++++.+++|++++++ +++|||+||+++|+
T Consensus 72 ~~~~~~~~~~~~~~l~----------~~~i~viGG~~l~~ 101 (159)
T 1df7_A 72 MASGAEVVGSLEEALT----------SPETWVIGGGQVYA 101 (159)
T ss_dssp CCTTSEEESSHHHHTT----------SSSEEECCCHHHHH
T ss_pred CCCCEEEECCHHHHhc----------CCcEEEECcHHHHH
Confidence 2467888889999886 35799999999874
No 18
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=99.95 E-value=5.1e-28 Score=200.32 Aligned_cols=116 Identities=42% Similarity=0.754 Sum_probs=98.6
Q ss_pred CccEEEEEEEeCCCee-ecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCC
Q 029025 78 RRPYQVVVAATHDMGI-GKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGS 156 (200)
Q Consensus 78 mrkI~livAvSlDG~I-G~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~ 156 (200)
.+++++++|+|+||+| |++|++||++++|++||+++|.+..++++.+++||||||||+++...+||++|++||+||++.
T Consensus 3 ~~~i~~i~A~sldg~iig~~g~lpW~~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~ 82 (192)
T 1aoe_A 3 KPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYE 82 (192)
T ss_dssp SCCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTCC
T ss_pred CCEEEEEEEEcCCCCeECCCCCCCCCChhHHHHHHHHhcCCCcccCCCEEEECchHhhcccccccCCCCCeEEEEcCCCc
Confidence 3679999999988776 999999999999999999999875566778999999999999975446999999999999865
Q ss_pred CcccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 157 FNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 157 ~~~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.+. +++++.+++|++++++. ++ ++++|||+||+++|+
T Consensus 83 ~~~-~~~~~~v~~~~~~al~~-~~-----~~~~i~ViGG~~l~~ 119 (192)
T 1aoe_A 83 NEI-IDDNIIHASSIESSLNL-VS-----DVERVFIIGGAEIYN 119 (192)
T ss_dssp CEE-EETTEEEESSHHHHHHT-CC-----SEEEEEECCCHHHHH
T ss_pred ccc-CCCCEEEECCHHHHHHh-hc-----CCCeEEEEcCHHHHH
Confidence 321 24578899999999988 54 478999999999884
No 19
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=99.95 E-value=4e-28 Score=228.44 Aligned_cols=117 Identities=42% Similarity=0.698 Sum_probs=104.4
Q ss_pred CccEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCC
Q 029025 78 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 157 (200)
Q Consensus 78 mrkI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~ 157 (200)
||++++++|+|+||+||++|+|||++|+|++||+++|.+..+|++.++|||||||||+++ .|||++|++||+||++..
T Consensus 4 MrkI~lIvA~SldG~IG~dg~LpW~lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsig--~~PLp~R~nIVlSrt~~~ 81 (521)
T 3hj3_A 4 KNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRPLKNRIIVVISSSLPQ 81 (521)
T ss_dssp CCEEEEEEEETTTCEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGT--TCCCTTSEEEEECSSSCC
T ss_pred CceEEEEEEECCCCcEECCCCCCCCCHHHHHHHHHHHcCCCccccCCEEEEcccHHhhcC--cccCCCCeEEEEcCCCcc
Confidence 899999999999999999999999999999999999998778899999999999999994 489999999999999764
Q ss_pred cccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 158 NIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 158 ~~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
.. ..+++.+++|++++++.+++++ +.++|||+||+++|+
T Consensus 82 ~~-~~~~~~V~~sl~eal~~lk~~~---g~~~I~VIGGa~ly~ 120 (521)
T 3hj3_A 82 DE-ADPNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYR 120 (521)
T ss_dssp CC-SCSSEEEESSTTTTTTSSSSCT---TEEEEEEEECHHHHH
T ss_pred cC-CCCCEEEECCHHHHHHHHhhcc---CCCCEEEEeCHHHHH
Confidence 21 2456799999999999998752 348999999999984
No 20
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=99.94 E-value=4.1e-28 Score=208.92 Aligned_cols=116 Identities=38% Similarity=0.588 Sum_probs=97.5
Q ss_pred cEEEEEEEeCCCeeecCCCCCC-cChhhHHHHHHHhhCCC--------------------------------------CC
Q 029025 80 PYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTS--------------------------------------DP 120 (200)
Q Consensus 80 kI~livAvSlDG~IG~~G~LpW-~l~eD~~fF~~~T~~~~--------------------------------------~p 120 (200)
+..+++|++.+|+||++|+||| ++|+|++||+++|+++. .+
T Consensus 26 ~~~~~~~~~~~~~IG~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~ 105 (238)
T 2bl9_A 26 TKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNAD 105 (238)
T ss_dssp SCCCTTCSCSSCEEEBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC---------------------
T ss_pred cEEEEEEecCCCeecCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCccccccccccccccccc
Confidence 6677888999999999999999 99999999999998431 12
Q ss_pred CCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCcccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 121 GKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 121 ~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
+..++|||||||||+++...+|||+|++||+||++.... .++++.+++|++++++.+++. ++++|||+||++||+
T Consensus 106 ~~g~~VIMGRkTyEsi~~~~~PLp~R~nIVlSr~~~~~~-~~~~v~v~~sl~eal~~lk~~----~~~~I~ViGGa~Iy~ 180 (238)
T 2bl9_A 106 KLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKED-VKEKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQVYR 180 (238)
T ss_dssp CCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCTTT-CCSSCEEESCHHHHHHHHHTC----CCSCEEEEECHHHHH
T ss_pred ccCCEEEEchhHhhhhcccccCcCCCEEEEEeCCCcccc-CCCCEEEECCHHHHHHHHHhC----CCCCEEEECcHHHHH
Confidence 235999999999999975457999999999999865321 256788888999999999985 578999999999984
No 21
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=99.94 E-value=8.6e-28 Score=211.28 Aligned_cols=118 Identities=31% Similarity=0.535 Sum_probs=98.4
Q ss_pred CccEEEEEEEeCCCeeecCCCCCC-cChhhHHHHHHHhhCCCC----------------------------CCCccEEEE
Q 029025 78 RRPYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSD----------------------------PGKRNAVVM 128 (200)
Q Consensus 78 mrkI~livAvSlDG~IG~~G~LpW-~l~eD~~fF~~~T~~~~~----------------------------p~k~daVIM 128 (200)
..++++++|++.||+||++|+||| ++|+|++||+++|+++.+ ++..++|||
T Consensus 25 ~~~~~~i~a~~~n~~IG~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f~~~ig~~VIM 104 (280)
T 1j3k_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (280)
T ss_dssp SCGGGCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCCEEEE
T ss_pred cccEEEEEEecCCceeccCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhhccccCCEEEE
Confidence 346778899999999999999999 999999999999984211 112499999
Q ss_pred chhhhhhhcCCCCCCCCCeEEEEcCCCCCcccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 129 GRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 129 GRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
||||||+++...||||+|++|||||++.... .++++.++++++++++.+++. ++++|||+||++||+
T Consensus 105 GRkTyEsip~~~~PLp~R~nIVlSr~~~~~~-~~~~v~vv~sl~eal~~lk~~----~~~~I~ViGGa~ly~ 171 (280)
T 1j3k_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKED-FDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQ 171 (280)
T ss_dssp EHHHHHHSCGGGCSCTTSEEEEECSSCCGGG-CCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHH
T ss_pred cchHhhhhcccccCcCCCeEEEEeCCCcccc-CCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHH
Confidence 9999999975457999999999999865321 256788888999999999875 578999999999984
No 22
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=99.93 E-value=1.9e-27 Score=226.57 Aligned_cols=118 Identities=31% Similarity=0.529 Sum_probs=101.6
Q ss_pred CccEEEEEEEeCCCeeecCCCCCC-cChhhHHHHHHHhhCC----------------------------CCCCCccEEEE
Q 029025 78 RRPYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMST----------------------------SDPGKRNAVVM 128 (200)
Q Consensus 78 mrkI~livAvSlDG~IG~~G~LpW-~l~eD~~fF~~~T~~~----------------------------~~p~k~daVIM 128 (200)
..++.+|+|++.+|+||++|+||| ++|+|++||+++|+.+ ..|++.++|||
T Consensus 25 ~~~i~lIvA~~~n~gIG~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~VIM 104 (608)
T 3qg2_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (608)
T ss_dssp CSCCCCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCEEEEE
T ss_pred CceEEEEEEeCCCCccccCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCccccccccCcCCEEEE
Confidence 568999999999999999999999 8999999999999832 14677899999
Q ss_pred chhhhhhhcCCCCCCCCCeEEEEcCCCCCcccCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 129 GRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 129 GRkTyEsi~~~~~pl~~r~~IVlSrt~~~~~~~~~~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
||||||++|...+|||+|++|||||++.... ..+++.+++|++++++.+++. ++++|||+||++||+
T Consensus 105 GRKTfESIp~~frPLPgR~NIVLSR~~~~~~-~~~gv~V~~sleeal~~lk~~----~~~~IfVIGGa~IY~ 171 (608)
T 3qg2_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKED-FDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQ 171 (608)
T ss_dssp EHHHHHHSCGGGCSCTTEEEEEECSSCCGGG-CCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHH
T ss_pred chHHHHhhccccCCCCCCeEEEECCCCcccc-CCCCEEEECCHHHHHHHHhcC----CCCeEEEECCHHHHH
Confidence 9999999986557999999999999865321 245788999999999999875 468999999999984
No 23
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=99.93 E-value=6e-27 Score=194.96 Aligned_cols=105 Identities=28% Similarity=0.420 Sum_probs=87.2
Q ss_pred EEEEEEEeC--------CCeeecCCCCCC-cChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEE
Q 029025 81 YQVVVAATH--------DMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVL 151 (200)
Q Consensus 81 I~livAvSl--------DG~IG~~G~LpW-~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVl 151 (200)
|++|+|+|+ ||+||++|+||| ++++|++||++.|.+ ++|||||||||+++ .|||+|++||+
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG~~g~lpW~~l~~D~~~F~~~t~~-------~~vIMGRkTyesi~---~plp~R~~iVl 71 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTEG-------TIMIMGAKTFQSLP---TLLPGRSHIVV 71 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEBTTBCTTCCCHHHHHHHHHHHTT-------SEEEEEHHHHHTCS---SCCTTSCEEEE
T ss_pred EEEEEEEcCccccCCCcCCeECCCCCCCCcCChHHHHHHHHHhcC-------CEEEEchhHhhhcc---cccCCCcEEEE
Confidence 789999999 999999999999 999999999999985 99999999999997 48999999999
Q ss_pred cCCCCCcc--cCCC-----------------CeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 152 THSGSFNI--ASLE-----------------NVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 152 Srt~~~~~--~~~~-----------------~v~V~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
||++.... .+.+ ...+.++++++++.+++ ++++|||+||+++|+
T Consensus 72 Sr~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~sl~eal~~lk~-----~~~~I~ViGG~~ly~ 134 (193)
T 1juv_A 72 CDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLD-----QNSKVSVIGGPALLY 134 (193)
T ss_dssp CCTTSCCCCCTTCCCCSEEECHHHHHHHHTTCCEEEECTTSSCEEEEC-----TTSCEEEEECHHHHH
T ss_pred cCCCcccccccccccceeecccccccccccccceecCCHHHHHHHHHc-----CCCcEEEECcHHHHH
Confidence 99853210 0111 12467778888877765 478999999999984
No 24
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.90 E-value=5.2e-24 Score=173.56 Aligned_cols=111 Identities=17% Similarity=0.293 Sum_probs=93.0
Q ss_pred CCccEEEEEEEeCCCeee-cCCCCCCcChh-----hHHHHHHHhhCCCCCCCccEEEEchhhhhhhcC----CCCCCCCC
Q 029025 77 ARRPYQVVVAATHDMGIG-KDGKLPWNLPS-----DLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP----LYRPLPGR 146 (200)
Q Consensus 77 ~mrkI~livAvSlDG~IG-~~G~LpW~l~e-----D~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~----~~~pl~~r 146 (200)
+|||+++++|+|+||+|| ++|+++|+.++ +.++|.+.+.. .+++||||+||+++++ ..+|++++
T Consensus 2 mM~kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~~~~~p~~~~~~~p~~~~ 75 (178)
T 3jtw_A 2 MARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSK------IDTVIMGRTTYEQVTQKLSPEKYVYADR 75 (178)
T ss_dssp -CCCEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHH------EEEEEEEHHHHHHHHHHTCSSSCTTTTS
T ss_pred CceEEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhc------CCEEEEChHHHhhhhhccCCCCCCCCCC
Confidence 499999999999999998 79999998765 46788888753 5999999999999852 24799999
Q ss_pred eEEEEcCCCCCcccCCCCeEEe-CCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 147 LNVVLTHSGSFNIASLENVEIC-RSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 147 ~~IVlSrt~~~~~~~~~~v~V~-~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
++||+||+.... .+++.++ .|++++++.|++. ++++|||+||+++|+
T Consensus 76 ~~iV~s~~~~~~---~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~ 123 (178)
T 3jtw_A 76 QTYIVTSHLGED---TDKIKYWKQSPVELVKRIQKE----KGKDVWIVGGAKIID 123 (178)
T ss_dssp EEEEECSSCCCC---CSSEEEECSCHHHHHHHHHTS----SCCEEEEEECHHHHH
T ss_pred CEEEEeCCCCCC---CCCEEEEcCCHHHHHHHHHhC----CCCEEEEEChHHHHH
Confidence 999999987542 4567555 5999999999986 689999999999873
No 25
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.88 E-value=1.4e-22 Score=162.99 Aligned_cols=106 Identities=33% Similarity=0.440 Sum_probs=90.4
Q ss_pred ccEEEEEEEeCCCeeecCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCCCCCCeEEEEcCCCCCc
Q 029025 79 RPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFN 158 (200)
Q Consensus 79 rkI~livAvSlDG~IG~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~pl~~r~~IVlSrt~~~~ 158 (200)
||+++++|+|+||+||.+++ ||+.++|.++|.+.+.. .+++||||+||++++ +|+++++++|+||++...
T Consensus 1 ~kv~l~~A~slDG~Ia~~~~-~W~~~~~~~~~~~~~~~------~dailmGr~T~~~l~---~p~~~~~~~V~s~~~~~~ 70 (168)
T 1cz3_A 1 AKVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTE------IGNVVMGRITFEEIG---RPLPERLNVVLTRRPKTS 70 (168)
T ss_dssp CEEEEEEEECTTCEEECSCT-TCSCHHHHHHHHHHHHH------HTEEEEEHHHHHHHC---SCCTTSEEEEECSSCCCC
T ss_pred CeEEEEEEEcCCCeEECCCC-CCCChHHHHHHHHHHHh------CCEEEEChHHhhcCC---CCCCCCeEEEECCCCCcc
Confidence 58999999999999987666 99988899999999854 599999999999975 799999999999986511
Q ss_pred ccCCCCeEEeC-CHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 159 IASLENVEICR-SIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 159 ~~~~~~v~V~~-sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
..+++.++. |++++++.|++. +.++|||+||+++|+
T Consensus 71 --~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~ 107 (168)
T 1cz3_A 71 --NNPSLVFFNGSPADVVKFLEGK----GYERVAVIGGKTVFT 107 (168)
T ss_dssp --SCTTEEEECSCHHHHHHHHHHT----TCSEEEEEECHHHHH
T ss_pred --CCCCEEEEeCCHHHHHHHHHhC----CCCEEEEECCHHHHH
Confidence 134676665 999999999875 678999999999873
No 26
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.83 E-value=1.2e-20 Score=156.92 Aligned_cols=111 Identities=22% Similarity=0.240 Sum_probs=86.0
Q ss_pred CCccEEEEEEEeCCCeee-cCCCCCCcChh-----hHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCC--CCCCCCCeE
Q 029025 77 ARRPYQVVVAATHDMGIG-KDGKLPWNLPS-----DLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL--YRPLPGRLN 148 (200)
Q Consensus 77 ~mrkI~livAvSlDG~IG-~~G~LpW~l~e-----D~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~--~~pl~~r~~ 148 (200)
.|+++++++|+|+||+|| ++|+++|+.++ |..+|.+..+. .+++||||||||+++.. .||+ ++++
T Consensus 18 ~~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~e~~~~~~~~~P~-~~~~ 90 (197)
T 3ky8_A 18 QGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMER------VDGLVMGRNTLDMVLSFDCDWPY-SKPV 90 (197)
T ss_dssp TTCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHH------CSEEEEEHHHHHHHCCTTCCCCC-SSCE
T ss_pred CCCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHh------CCEEEEcHHHhHhHhhcCCCCCC-CCcE
Confidence 489999999999999996 89999998765 33445554332 59999999999998753 3677 4589
Q ss_pred EEEcCCCCCcccCC-CCeEE-eCCHHHHHHHhcCCCCCCCCCcEEEEeCccc
Q 029025 149 VVLTHSGSFNIASL-ENVEI-CRSIHLALELLAEPPYCSSIEKVFVIGGGQI 198 (200)
Q Consensus 149 IVlSrt~~~~~~~~-~~v~V-~~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~I 198 (200)
||+||++......+ +++.+ ..|++++++.|++. +.++|||.||+++
T Consensus 91 iVls~~~~~~~~~~~~~~~~v~~~l~~~l~~L~~~----~~~~i~v~GG~~l 138 (197)
T 3ky8_A 91 FVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAK----GFNELYIDGGVTI 138 (197)
T ss_dssp EEECSSCCSCCTTCTTTEEEECSCHHHHHHHHHHT----TCCEEEEESHHHH
T ss_pred EEEeCCCCCCccccCCCEEEEeCCHHHHHHHHHhC----CCCeEEEEehHHH
Confidence 99999875421112 36755 58999999999875 6889999999875
No 27
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.80 E-value=3.3e-20 Score=149.93 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=86.9
Q ss_pred CccEEEEEEEeCCCeee-cCCCCCCcChh---h--HHHHHHHhhCCCCCCCccEEEEchhhhhhhcCC-CCCCCCCeEEE
Q 029025 78 RRPYQVVVAATHDMGIG-KDGKLPWNLPS---D--LKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL-YRPLPGRLNVV 150 (200)
Q Consensus 78 mrkI~livAvSlDG~IG-~~G~LpW~l~e---D--~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~-~~pl~~r~~IV 150 (200)
|+++++++|+|+||+|+ ++|++||+.++ + .++|.+.+.. .+++||||+||+.+... .||+ ++++||
T Consensus 3 mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~dailmGr~T~~~~~~~~~~P~-~~~~iV 75 (178)
T 2xw7_A 3 MVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIET------IGVLVMGASTYEWVVEHGDWSY-DQPAWV 75 (178)
T ss_dssp SCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHT------EEEEEEEHHHHHHHHHSSCCCC-SSCEEE
T ss_pred CcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHh------CCEEEECHHHHhhhhcCCCCCC-CCCEEE
Confidence 78999999999999995 79999998653 2 5788887754 59999999999988631 2444 888999
Q ss_pred EcCCCCCcccCCCCeEEe-CCHHHHHHHhcCCCCCCCCCcEEEEeCccccC
Q 029025 151 LTHSGSFNIASLENVEIC-RSIHLALELLAEPPYCSSIEKVFVIGGGQILR 200 (200)
Q Consensus 151 lSrt~~~~~~~~~~v~V~-~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY~ 200 (200)
+||+.... ..++++.++ .|++++++.|++.+ +.++|||+||+++|+
T Consensus 76 ~s~~~~~~-~~~~~~~~~~~dl~~~l~~L~~~~---~~~~v~v~GG~~l~~ 122 (178)
T 2xw7_A 76 LTHRPEIA-AESHPMQVFSGDVAELHPELVAAA---GGKDVWVVGGGDVAA 122 (178)
T ss_dssp ECSCGGGC-BTTBCCEEECSCHHHHHHHHHHHT---TTSEEEEEECHHHHH
T ss_pred EeCCCCCc-CCCCCEEEECCCHHHHHHHHHhcc---CCCcEEEEccHHHHH
Confidence 99983111 124567555 79999999998752 238999999999873
No 28
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=3.1e-19 Score=145.23 Aligned_cols=110 Identities=18% Similarity=0.273 Sum_probs=86.3
Q ss_pred CCCccEEEEEEEeCCCeee-cCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCCCCC----------CC
Q 029025 76 RARRPYQVVVAATHDMGIG-KDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP----------LP 144 (200)
Q Consensus 76 ~~mrkI~livAvSlDG~IG-~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~~~p----------l~ 144 (200)
..|+++++++|+|+||+|| ++|+++|++++|..+|.+.+.. .+++||||+||+.++. .+| +.
T Consensus 6 ~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~------~dail~Gr~T~~~~~~-~~p~~~Pd~~~~~~~ 78 (189)
T 2gd9_A 6 LKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQ------IDTILYGRKSFDLWGQ-YIPKNEDPDTEKELW 78 (189)
T ss_dssp CCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHT------EEEEEEEHHHHHHHTT-C----------CCHH
T ss_pred CCCceEEEEEEEccccceECCCCCcCcccCChHHHHHHHHhc------CCEEEEChHHHhhhhh-cCCCCCCccccchhH
Confidence 4488999999999999997 5899999976655578887643 6999999999998863 133 22
Q ss_pred ----CCeEEEEcCCCCCcccCCCCeEEe-CCHHHHHHHhcCCCCCCCCCcEEEEeCcccc
Q 029025 145 ----GRLNVVLTHSGSFNIASLENVEIC-RSIHLALELLAEPPYCSSIEKVFVIGGGQIL 199 (200)
Q Consensus 145 ----~r~~IVlSrt~~~~~~~~~~v~V~-~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY 199 (200)
+++++|+|++.... .+ ++.+. .|++++++.|++. ++++|||.||+++|
T Consensus 79 ~~~~~~~~iV~t~~~~~~--~~-~~~~~~~~l~~~l~~L~~~----~~~~i~v~GG~~l~ 131 (189)
T 2gd9_A 79 KLVHSKKKYVFSRTQNEI--DN-QAIFINDNILEEVNKLKKN----PGKDIWLYGGASLI 131 (189)
T ss_dssp HHHHHSEEEEECCEEETT--TT-EEECCHHHHHHHHHHHHHS----CCSEEEEEECHHHH
T ss_pred HHhCCCCEEEEeCCCCCC--CC-CeEEEcCCHHHHHHHHHhC----CCCeEEEEChHHHH
Confidence 78999999975321 23 56554 5899999999986 67999999999886
No 29
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.67 E-value=1.1e-16 Score=137.06 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=77.6
Q ss_pred CCCccEEEEEEEeCCCee-ec--CCCCC-------CcChh-hH-------HHHHH-------------------HhhCCC
Q 029025 76 RARRPYQVVVAATHDMGI-GK--DGKLP-------WNLPS-DL-------KFFKQ-------------------LTMSTS 118 (200)
Q Consensus 76 ~~mrkI~livAvSlDG~I-G~--~G~Lp-------W~l~e-D~-------~fF~~-------------------~T~~~~ 118 (200)
..|+|+++.+++|+|||| |. ++.+- |..+. ++ .+|.+ ...+
T Consensus 18 ~~m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~-- 95 (231)
T 3kgy_A 18 QGMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFER-- 95 (231)
T ss_dssp GGSCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHHT--
T ss_pred cccceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHHhc--
Confidence 459999999999999999 43 22222 43221 11 12222 2322
Q ss_pred CCCCccEEEEchhhhhhhcCC---CCCCCCCeEEEEcCCCCCcccCCCCe---EEeCCHHHHHHHhcCCCCCCCCCcEEE
Q 029025 119 DPGKRNAVVMGRKTWESISPL---YRPLPGRLNVVLTHSGSFNIASLENV---EICRSIHLALELLAEPPYCSSIEKVFV 192 (200)
Q Consensus 119 ~p~k~daVIMGRkTyEsi~~~---~~pl~~r~~IVlSrt~~~~~~~~~~v---~V~~sl~eaI~~Lk~~~~~~~~kdI~V 192 (200)
.+++||||||||+++.. .+|+ ++++||+||++..+....+++ ++.++++++++.|++. .++++|||
T Consensus 96 ----i~~vIMGRkTye~~~~~wp~~~p~-~r~~iVlS~~~~~~~~~~~~~~v~~v~~~l~eal~~l~~~---~~~~~I~V 167 (231)
T 3kgy_A 96 ----TGAHIMGKRMFEGGERGWPEEAPF-HTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREA---AGERDIRI 167 (231)
T ss_dssp ----EEEEEEEHHHHHHHHHHSCSSCSC-CSEEEEECSSCCCCEEETTTEEEEEECSCHHHHHHHHHHH---HTTSEEEE
T ss_pred ----CCEEEEChhhhhhhhhhcCCcCcC-CCcEEEEcCCCCCccccCCCcEEEEEcCCHHHHHHHHHhh---cCCCcEEE
Confidence 69999999999998631 1344 899999999975321111233 3568999999999762 15789999
Q ss_pred EeCccccC
Q 029025 193 IGGGQILR 200 (200)
Q Consensus 193 iGGa~IY~ 200 (200)
+||+++|+
T Consensus 168 ~GG~~l~~ 175 (231)
T 3kgy_A 168 SGGANVIQ 175 (231)
T ss_dssp EECHHHHH
T ss_pred eCCHHHHH
Confidence 99999873
No 30
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.31 E-value=5.4e-12 Score=113.81 Aligned_cols=112 Identities=23% Similarity=0.255 Sum_probs=82.3
Q ss_pred CccEEEEEEEeCCCeee-cCCCCCCcC-hhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCC---------CCC----
Q 029025 78 RRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL---------YRP---- 142 (200)
Q Consensus 78 mrkI~livAvSlDG~IG-~~G~LpW~l-~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~---------~~p---- 142 (200)
++++++.+|+|+||+|+ ++|+.+|.. +++.++|.++... .|++||||+||+...+. ..|
T Consensus 157 rP~V~lk~A~SLDG~Ia~~~G~~~Wit~~~~~~~~~~lr~~------~daILvGr~T~~~d~P~Lt~R~~~g~~~P~rvV 230 (373)
T 2b3z_A 157 LPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKT------HQSILVGVGTVKADNPSLTCRLPNVTKQPVRVI 230 (373)
T ss_dssp SCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHH------SSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEEE
T ss_pred chhheeeeeecCCCceeccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhhhhcCCcccccCcCCCCCCeEEE
Confidence 77899999999999996 789999975 5667777776543 59999999999974210 011
Q ss_pred ------CC---------CCeEEEEcCCCCCcc----cCCCCeEEe------CCHHHHHHHhcCCCCCCCCCcEEEEeCcc
Q 029025 143 ------LP---------GRLNVVLTHSGSFNI----ASLENVEIC------RSIHLALELLAEPPYCSSIEKVFVIGGGQ 197 (200)
Q Consensus 143 ------l~---------~r~~IVlSrt~~~~~----~~~~~v~V~------~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~ 197 (200)
++ +++++|+|++..... -.+.++.+. .|+.++++.|++. +.++|||.||++
T Consensus 231 ld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~ 306 (373)
T 2b3z_A 231 LDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEE----GIMSVYVEGGSA 306 (373)
T ss_dssp ECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHT----TCCEEEEEECHH
T ss_pred EcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHC----CCCEEEEEEhHH
Confidence 11 578888888753110 013455443 5899999999986 689999999998
Q ss_pred cc
Q 029025 198 IL 199 (200)
Q Consensus 198 IY 199 (200)
++
T Consensus 307 l~ 308 (373)
T 2b3z_A 307 VH 308 (373)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 31
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=99.21 E-value=5.8e-11 Score=98.61 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=75.6
Q ss_pred CccEEEEEEEeCCCeee-cCCCCCCcCh-hhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcC---------CCCCC---
Q 029025 78 RRPYQVVVAATHDMGIG-KDGKLPWNLP-SDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP---------LYRPL--- 143 (200)
Q Consensus 78 mrkI~livAvSlDG~IG-~~G~LpW~l~-eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~---------~~~pl--- 143 (200)
+.++++.+|+|+||+|+ .+|+. |... ++.+++.+.... .|++||||+||+...+ ..+|+
T Consensus 3 rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~------~dailvG~~T~~~d~p~L~~~r~~~~~~P~~vV 75 (219)
T 2azn_A 3 KPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRAN------VDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRIV 75 (219)
T ss_dssp CCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHT------SSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEEE
T ss_pred CCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHH------CCEEEEChhehhhcCCcCccccccCCCCCEEEE
Confidence 56799999999999994 67888 9743 445556665543 6999999999996521 12332
Q ss_pred ---------------CCCeEEEEcCCCCCccc----C---CCCeEEe------CCHHHHHHHhcCCCCCCCCCcEEEEeC
Q 029025 144 ---------------PGRLNVVLTHSGSFNIA----S---LENVEIC------RSIHLALELLAEPPYCSSIEKVFVIGG 195 (200)
Q Consensus 144 ---------------~~r~~IVlSrt~~~~~~----~---~~~v~V~------~sl~eaI~~Lk~~~~~~~~kdI~ViGG 195 (200)
.+.+++|+|++...... . ..++.+. .++.++++.|++. +.++|||.||
T Consensus 76 ~d~~~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~ilveGG 151 (219)
T 2azn_A 76 VDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDK----GIKSILLEGG 151 (219)
T ss_dssp ECTTCCCCTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHT----TCCEEEEEEC
T ss_pred ECCCCCCCccchhhcCCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHc----CCCEEEEeeC
Confidence 13456777665321100 0 1145333 4899999999986 6899999999
Q ss_pred cccc
Q 029025 196 GQIL 199 (200)
Q Consensus 196 a~IY 199 (200)
+++.
T Consensus 152 ~~l~ 155 (219)
T 2azn_A 152 GTLN 155 (219)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 32
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.08 E-value=7.1e-10 Score=99.56 Aligned_cols=112 Identities=22% Similarity=0.208 Sum_probs=76.6
Q ss_pred CccEEEEEEEeCCCeee-cCCCCCCcChhhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcCC---CCCC-CCCeEEEEc
Q 029025 78 RRPYQVVVAATHDMGIG-KDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL---YRPL-PGRLNVVLT 152 (200)
Q Consensus 78 mrkI~livAvSlDG~IG-~~G~LpW~l~eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~~---~~pl-~~r~~IVlS 152 (200)
+..+++.+|+|+||+|+ ++|+..|..+++.+++.+.... .|++||||+||+...+. .++. ++...||++
T Consensus 159 rP~V~lk~A~SLDG~IA~~~G~s~Wit~~~~~~~~~lr~~------~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rvVld 232 (360)
T 2hxv_A 159 RPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNI------YSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVILD 232 (360)
T ss_dssp SCEEEEEEEEETTSEEECTTSCCTTSCSTTHHHHHHHHHH------SSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEEEC
T ss_pred hhhheeehhhccCCcccCCCCCcccCCHHHHHHHHHHHHH------CCEEEECccchhhhCCcccccCCCCCCCeEEEEC
Confidence 56799999999999995 6888899764445555555443 59999999999864211 1122 233458999
Q ss_pred CCCCCccc------CCCCeE-Ee-----------------CCHHHHHHHhcCCCCCCCCCcEEEEeCcccc
Q 029025 153 HSGSFNIA------SLENVE-IC-----------------RSIHLALELLAEPPYCSSIEKVFVIGGGQIL 199 (200)
Q Consensus 153 rt~~~~~~------~~~~v~-V~-----------------~sl~eaI~~Lk~~~~~~~~kdI~ViGGa~IY 199 (200)
+++..+.. ...... ++ .|+.++++.|++. +.++|||.||+++.
T Consensus 233 ~~~~~p~~~~~~~~~~~~~iv~t~~~~~~~~~~v~v~~~~~dl~~~l~~L~~~----g~~~vlVeGG~~L~ 299 (360)
T 2hxv_A 233 RKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYER----DIDSVLVEGGSKVF 299 (360)
T ss_dssp TTCTTTTCCCGGGSSSSCEEEEESCSSCCCCTTSEEEECCCCHHHHHHHHHHT----TCCEEEECCCHHHH
T ss_pred CCCCCChhHhHHhcCCCcEEEEECCCchhhccCcEEEcCCCCHHHHHHHHHhC----CCCEEEEEecHHHH
Confidence 87543210 001121 11 3899999999886 78999999998763
No 33
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=98.94 E-value=3.5e-09 Score=96.47 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=75.1
Q ss_pred CCccEEEEEEEeCCCeee-cCCCCCCcCh-hhHHHHHHHhhCCCCCCCccEEEEchhhhhhhcC----C-----------
Q 029025 77 ARRPYQVVVAATHDMGIG-KDGKLPWNLP-SDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP----L----------- 139 (200)
Q Consensus 77 ~mrkI~livAvSlDG~IG-~~G~LpW~l~-eD~~fF~~~T~~~~~p~k~daVIMGRkTyEsi~~----~----------- 139 (200)
.++++++.+|+|+||+|+ ++|+..|... ++.+++.+.... .|++||||+||+...+ .
T Consensus 172 ~rP~V~~k~A~SLDG~IA~~~G~s~Wit~~~~r~~~~~lra~------~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~~ 245 (402)
T 2g6v_A 172 GFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ------SHAILTSSATVLADDPALTVRWSELDEQTQAL 245 (402)
T ss_dssp SSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHH------CSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSS
T ss_pred ccchheeeeeecCCCCCccCCCCcCCcCCHHHHHHHHHHHHh------CCEEEECHHHHhhcCccccccccccccccccc
Confidence 377899999999999995 6888999743 344555544433 5999999999996411 0
Q ss_pred ------CCCC-----------------C-CCeEEEEcCCCCCcccCCCCeEEe--C------CHHHHHHHhcCCCCCCCC
Q 029025 140 ------YRPL-----------------P-GRLNVVLTHSGSFNIASLENVEIC--R------SIHLALELLAEPPYCSSI 187 (200)
Q Consensus 140 ------~~pl-----------------~-~r~~IVlSrt~~~~~~~~~~v~V~--~------sl~eaI~~Lk~~~~~~~~ 187 (200)
..|+ . +.+++|+|++..... -..++.+. + |+.++++.|++. +.
T Consensus 246 ~~~~~~~~P~rvVld~~~~lp~~a~~~~~~~~~iV~t~~~~~~~-l~~gv~vi~~~~~~g~vdl~~~l~~L~~~----g~ 320 (402)
T 2g6v_A 246 YPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSRE-WPETVRTLLIPEHKGHLDLVVLMMQLGKQ----QI 320 (402)
T ss_dssp CCGGGCCCCEEEEECTTCCCCTTSGGGSSSSCEEEEESSCCCSC-CCTTEEEEECCEETTEECHHHHHHHHHHT----TC
T ss_pred ccccccCCCeEEEECCCCCCChhhHhhcCCCCEEEEECCcchhh-hcCCCEEEEecCCCCCCCHHHHHHHHHhC----CC
Confidence 1121 1 456788887642211 01345443 3 899999999986 78
Q ss_pred CcEEEEeCcccc
Q 029025 188 EKVFVIGGGQIL 199 (200)
Q Consensus 188 kdI~ViGGa~IY 199 (200)
++|||.||+++.
T Consensus 321 ~~vlVEGG~~L~ 332 (402)
T 2g6v_A 321 NSIWVEAGPTLA 332 (402)
T ss_dssp CEEEECCCHHHH
T ss_pred CEEEEEEhHHHH
Confidence 999999998763
No 34
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=98.59 E-value=4.6e-07 Score=77.82 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=39.5
Q ss_pred CccEEEEEEEeCCCeeecCCCCCCcCh-hhHHHHHHHhhCCCCCCCccEEEEchhhhhh
Q 029025 78 RRPYQVVVAATHDMGIGKDGKLPWNLP-SDLKFFKQLTMSTSDPGKRNAVVMGRKTWES 135 (200)
Q Consensus 78 mrkI~livAvSlDG~IG~~G~LpW~l~-eD~~fF~~~T~~~~~p~k~daVIMGRkTyEs 135 (200)
+.++++.+|+|+||+.+.+|...|... ++.+++.+.... .|++||||+||+.
T Consensus 33 rP~V~lk~a~SLDG~a~~~g~s~wit~~~~~~~~~~lr~~------~DaIlvG~~T~~~ 85 (270)
T 2p4g_A 33 EPECRAIAITSINGSATLSGVSGPMGDQTDADLLIQLRGW------ADAIVVGAETARK 85 (270)
T ss_dssp CCEEEEEEEEETTSBSCBTTBSGGGCCHHHHHHHHHHHHH------CSEEEEEHHHHHH
T ss_pred CCEEEEEEEECCCCCcCCCCCccCcCCHHHHHHHHHHHHH------CCEEEEChHHhhh
Confidence 678999999999999435788889743 444555554433 5999999999984
No 35
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=38.89 E-value=17 Score=20.40 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=12.6
Q ss_pred eeeEeeeeeeeeeeee
Q 029025 39 LFRVSNVTVKYRFCTR 54 (200)
Q Consensus 39 ~~~~~~~~~~~~~~~~ 54 (200)
..|+..|-+.||+|-.
T Consensus 7 yvrirgvlvryrrcw~ 22 (26)
T 2jni_A 7 YVRIRGVLVRYRRCWX 22 (26)
T ss_dssp EEEETTEEEEEEEEC-
T ss_pred EEEEEEEEEEEEEeec
Confidence 4577889999999964
Done!